AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001950 MtrunA17_Chr1g0152141 99.660 588 2 0 1 588 1 588 0.0 1165
Msa0001950 MtrunA17_Chr1g0152141 98.754 562 7 0 600 1161 27 588 0.0 1101
Msa0001950 MtrunA17_Chr1g0152151 99.150 588 5 0 1 588 1 588 0.0 1160
Msa0001950 MtrunA17_Chr1g0152151 99.288 562 4 0 600 1161 27 588 0.0 1107
Msa0001950 MtrunA17_Chr5g0421251 66.996 506 164 2 587 1090 3 507 0.0 681
Msa0001950 MtrunA17_Chr5g0421251 66.931 505 157 2 13 517 13 507 0.0 679
Msa0001950 MtrunA17_Chr4g0028601 51.195 586 274 6 6 583 1 582 0.0 543
Msa0001950 MtrunA17_Chr4g0028601 52.459 549 256 4 609 1156 38 582 3.39e-179 538
Msa0001950 MtrunA17_Chr4g0043731 48.134 536 272 5 43 576 37 568 1.97e-163 497
Msa0001950 MtrunA17_Chr4g0043731 47.681 539 276 5 613 1149 34 568 6.08e-163 496
Msa0001950 MtrunA17_Chr1g0196761 45.596 579 299 5 12 585 6 573 3.13e-161 491
Msa0001950 MtrunA17_Chr1g0196761 46.524 561 284 5 603 1158 24 573 9.88e-161 489
Msa0001950 MtrunA17_Chr1g0196751 45.018 562 297 4 12 572 6 556 8.99e-156 477
Msa0001950 MtrunA17_Chr1g0196751 46.679 527 276 3 620 1145 34 556 1.15e-155 476
Msa0001950 MtrunA17_Chr8g0342341 43.376 551 302 5 614 1158 29 575 4.64e-143 443
Msa0001950 MtrunA17_Chr8g0342341 43.297 552 299 5 45 585 27 575 5.44e-143 443
Msa0001950 MtrunA17_Chr5g0421241 53.571 84 22 2 524 591 3 85 1.30e-18 81.6
Msa0001950 MtrunA17_Chr5g0421241 54.321 81 20 2 1097 1161 3 82 5.43e-18 80.1
Msa0001950 MtrunA17_Chr5g0440381 23.218 547 320 20 637 1138 30 521 6.03e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001950 AT1G55490.5 89.680 562 57 1 600 1161 37 597 0.0 1003
Msa0001950 AT1G55490.5 90.958 553 49 1 36 588 46 597 0.0 1002
Msa0001950 AT1G55490.1 89.680 562 57 1 600 1161 37 597 0.0 1003
Msa0001950 AT1G55490.1 90.958 553 49 1 36 588 46 597 0.0 1002
Msa0001950 AT1G55490.3 89.680 562 57 1 600 1161 37 597 0.0 1003
Msa0001950 AT1G55490.3 90.958 553 49 1 36 588 46 597 0.0 1002
Msa0001950 AT1G55490.4 89.680 562 57 1 600 1161 37 597 0.0 1003
Msa0001950 AT1G55490.4 90.958 553 49 1 36 588 46 597 0.0 1002
Msa0001950 AT1G55490.2 89.680 562 57 1 600 1161 37 597 0.0 1003
Msa0001950 AT1G55490.2 90.958 553 49 1 36 588 46 597 0.0 1002
Msa0001950 AT3G13470.1 90.054 553 54 1 36 588 42 593 0.0 997
Msa0001950 AT3G13470.1 90.416 553 52 1 609 1161 42 593 0.0 997
Msa0001950 AT5G56500.2 85.185 594 74 4 7 588 3 594 0.0 989
Msa0001950 AT5G56500.2 88.770 561 60 3 602 1161 36 594 0.0 987
Msa0001950 AT5G56500.1 85.185 594 74 4 7 588 3 594 0.0 989
Msa0001950 AT5G56500.1 88.770 561 60 3 602 1161 36 594 0.0 987
Msa0001950 AT1G26230.1 65.749 581 196 2 13 590 4 584 0.0 784
Msa0001950 AT1G26230.1 68.692 543 170 0 614 1156 34 576 0.0 781
Msa0001950 AT1G26230.4 68.786 519 162 0 638 1156 6 524 0.0 747
Msa0001950 AT1G26230.4 67.932 527 168 1 65 590 6 532 0.0 747
Msa0001950 AT1G26230.3 68.260 523 165 1 69 590 2 524 0.0 746
Msa0001950 AT1G26230.3 69.126 515 159 0 642 1156 2 516 0.0 746
Msa0001950 AT1G26230.2 64.833 509 177 1 13 519 4 512 0.0 675
Msa0001950 AT1G26230.2 67.432 479 156 0 614 1092 34 512 0.0 673
Msa0001950 AT1G26230.5 64.237 439 155 1 13 449 4 442 0.0 578
Msa0001950 AT1G26230.5 67.237 409 134 0 614 1022 34 442 0.0 575
Msa0001950 AT2G28000.1 51.397 537 256 4 609 1144 37 569 1.52e-175 529
Msa0001950 AT2G28000.1 51.583 537 255 4 36 571 37 569 3.32e-175 528
Msa0001950 AT2G33210.1 46.018 565 295 6 17 578 5 562 3.94e-160 489
Msa0001950 AT2G33210.1 47.280 533 276 3 620 1151 34 562 1.69e-159 487
Msa0001950 AT3G23990.1 45.359 571 296 5 8 577 5 560 1.89e-159 487
Msa0001950 AT3G23990.1 47.368 532 275 3 620 1150 33 560 8.53e-159 485
Msa0001950 AT2G33210.2 45.841 565 291 7 17 578 5 557 3.07e-156 478
Msa0001950 AT2G33210.2 47.092 533 272 4 620 1151 34 557 1.28e-155 477
Msa0001950 AT5G18820.1 46.631 564 291 7 21 578 6 565 2.62e-149 460
Msa0001950 AT5G18820.1 47.681 539 275 6 616 1151 31 565 1.20e-148 458
Msa0001950 AT3G13860.1 46.296 540 280 5 620 1156 33 565 5.78e-149 459
Msa0001950 AT3G13860.1 45.098 561 292 6 26 583 18 565 1.17e-148 458
Msa0001950 AT5G18820.2 46.943 458 239 4 124 578 3 459 2.05e-121 383
Msa0001950 AT5G18820.2 46.943 458 239 4 697 1151 3 459 2.05e-121 383
Msa0001950 AT5G18820.3 44.390 410 221 4 21 426 6 412 2.87e-98 320
Msa0001950 AT5G18820.3 45.714 385 205 3 616 999 31 412 1.04e-97 318
Msa0001950 AT3G11830.2 23.285 554 309 21 637 1138 30 519 2.60e-11 68.2
Msa0001950 AT3G11830.2 23.105 554 310 21 64 565 30 519 5.17e-11 67.4
Msa0001950 AT3G11830.1 23.201 556 309 21 637 1138 30 521 5.33e-11 67.4

Find 310 sgRNAs with CRISPR-Local

Find 1081 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCCATGGCTGAGACTTT+AGG 0.154088 1_1:+3727268 None:intergenic
TCCTCTGCAATTATCAAAAT+AGG 0.166829 1_1:+3715935 None:intergenic
TCCTCTGCAATTATCAAAAT+AGG 0.166829 1_1:+3724565 None:intergenic
TGGCCATGGCGGAGACTTTA+AGG 0.205297 1_1:+3718605 None:intergenic
TGGCCATGGCTGAGACTTTA+GGG 0.222791 1_1:+3727269 None:intergenic
AACTACTACCTCTGTTGTTT+TGG 0.233024 1_1:-3717797 Msa0001950:CDS
AACTACTACCTCTGTTGTTT+TGG 0.233024 1_1:-3726386 Msa0001950:CDS
TGAGAATATTGGTGCTAAAT+TGG 0.233906 1_1:-3717863 Msa0001950:CDS
TGAGAATATTGGTGCTAAAT+TGG 0.241648 1_1:-3726452 Msa0001950:CDS
CTCGCTTTGTAACTGCTTCT+TGG 0.266078 1_1:+3715530 None:intergenic
GCACTTAAGGCTCCTGGATT+TGG 0.266390 1_1:-3715848 Msa0001950:CDS
GCACTTAAGGCTCCTGGATT+TGG 0.266390 1_1:-3724478 Msa0001950:CDS
ATGCCATGGTTGTGTGAAAT+TGG 0.271093 1_1:+3727404 None:intergenic
AACTATTGTGGTTGTATCTT+TGG 0.272759 1_1:+3715567 None:intergenic
AACTATTGTGGTTGTATCTT+TGG 0.272759 1_1:+3724197 None:intergenic
AATCTATAAATCACCTTTGT+AGG 0.273262 1_1:+3714326 None:intergenic
AATCTATAAATCACCTTTGT+TGG 0.276775 1_1:+3722919 None:intergenic
GGCTAGGGTTTAAGAGGATT+TGG 0.287170 1_1:+3727438 None:intergenic
CTCGCTTGGTAACTGCTTCT+TGG 0.288189 1_1:+3724160 None:intergenic
AAGAGAGGGAAACCTCTATT+TGG 0.307722 1_1:+3715491 None:intergenic
GGTTTAAGAGGATTTGGTTT+TGG 0.307959 1_1:+3727444 None:intergenic
TTTAAGGTTCCGACTCTTCC+TGG 0.311790 1_1:+3718621 None:intergenic
TGTGAACAAGCTTGCGGATT+TGG 0.336342 1_1:-3727105 Msa0001950:CDS
TGGTGGTGTGGCTGTAATTC+AGG 0.336881 1_1:-3715143 Msa0001950:intron
AATGGTGGCTAGGGTTTAAG+AGG 0.350032 1_1:+3727432 None:intergenic
ACACCATCATTAACAATCTT+AGG 0.351092 1_1:+3718360 None:intergenic
ACACCATCATTAACAATCTT+AGG 0.351092 1_1:+3727023 None:intergenic
TCGCTTTGTAACTGCTTCTT+GGG 0.358585 1_1:+3715531 None:intergenic
CCTGGTGAGAGCGACGTTGC+TGG 0.360381 1_1:+3727303 None:intergenic
GGCCGCCAAGACAAATGATT+TGG 0.362795 1_1:-3717830 Msa0001950:CDS
TGTGAACAAGCTTGCAGATT+TGG 0.366191 1_1:-3718442 Msa0001950:CDS
TTTAGGGCTCCGATTCTTCC+TGG 0.368398 1_1:+3727285 None:intergenic
TGGCGGTGTGGCTGTAATTC+AGG 0.378807 1_1:-3723752 Msa0001950:intron
CAATAAGAAACACACCTCTT+TGG 0.381950 1_1:+3718329 None:intergenic
CCTCTGCAATTATCAAAATA+GGG 0.385162 1_1:+3715936 None:intergenic
CCTCTGCAATTATCAAAATA+GGG 0.385162 1_1:+3724566 None:intergenic
CTGTGTTGTTGTTGAGATAA+AGG 0.387501 1_1:-3713660 Msa0001950:CDS
CTGTGTTGTTGTTGAGATAA+AGG 0.387501 1_1:-3721410 Msa0001950:CDS
TCGCTTGGTAACTGCTTCTT+GGG 0.387602 1_1:+3724161 None:intergenic
GTTGTTCTTGAGAGCAAGTA+TGG 0.388399 1_1:-3718387 Msa0001950:CDS
GTTGTTCTTGAGAGCAAGTA+TGG 0.388399 1_1:-3727050 Msa0001950:CDS
TGGTGTTACTCTTGGTCCTA+AGG 0.393067 1_1:-3718418 Msa0001950:CDS
TGGTGTTACTCTTGGTCCTA+AGG 0.393067 1_1:-3727081 Msa0001950:CDS
GAGGGTATTGTAGTTGGTGG+TGG 0.394415 1_1:-3714847 Msa0001950:CDS
ACTGAAGATTGCAGCACTTA+AGG 0.394593 1_1:-3715861 Msa0001950:CDS
ACTGAAGATTGCAGCACTTA+AGG 0.394593 1_1:-3724491 Msa0001950:CDS
TACGGATATAATGCTGCAAC+TGG 0.399922 1_1:-3722979 Msa0001950:CDS
CTTGTTGTGAACAAACTTAG+AGG 0.403832 1_1:-3715887 Msa0001950:CDS
CTTGTTGTGAACAAACTTAG+AGG 0.403832 1_1:-3724517 Msa0001950:CDS
GAATGGAGGATGAAACTATT+AGG 0.407847 1_1:+3727500 None:intergenic
AGCCGCCAAGACAAATGATT+TGG 0.408630 1_1:-3726419 Msa0001950:CDS
GGCAACCCTATGGACAATTC+AGG 0.408645 1_1:-3713617 Msa0001950:intron
TCCAACGACGATACGAGATA+TGG 0.410275 1_1:-3714404 Msa0001950:CDS
GGTAACCCAATGGACAATTC+AGG 0.411976 1_1:-3721367 Msa0001950:intron
ACAAATTAAGAACCAAATAG+AGG 0.412098 1_1:-3715503 Msa0001950:intron
GGATATTGAACAAGAAGCTT+TGG 0.413311 1_1:-3715915 Msa0001950:CDS
GGATATTGAACAAGAAGCTT+TGG 0.413311 1_1:-3724545 Msa0001950:CDS
AAAGCTGGGAATGAGGTTCT+AGG 0.414128 1_1:-3715613 Msa0001950:CDS
AAAGCTGGGAATGAGGTTCT+AGG 0.414128 1_1:-3724243 Msa0001950:CDS
GTTGAGGAGGGTATTGTAGT+TGG 0.422734 1_1:-3723461 Msa0001950:CDS
GAGGATCCGGTTGAGAATAT+TGG 0.429757 1_1:-3717874 Msa0001950:CDS
GATGATATTGCCATCTTGAC+AGG 0.432753 1_1:-3715803 Msa0001950:CDS
GATGATATTGCCATCTTGAC+AGG 0.432753 1_1:-3724433 Msa0001950:CDS
TTAGCACCAATATTCTCAAC+TGG 0.436766 1_1:+3726457 None:intergenic
GGCCTTAGCTTAGACAAAGC+TGG 0.436997 1_1:-3715628 Msa0001950:CDS
GAGGATCCAGTTGAGAATAT+TGG 0.438153 1_1:-3726463 Msa0001950:CDS
TTGTCCATTGGGTTACCAAC+AGG 0.439504 1_1:+3721373 None:intergenic
TATGAAGATTTAATGTCGGC+TGG 0.440375 1_1:-3722952 Msa0001950:CDS
GAGGGTATTGTAGTTGGCGG+TGG 0.446592 1_1:-3723455 Msa0001950:CDS
GTTGAGTAAGGTTGGTAGAA+AGG 0.446649 1_1:-3716265 Msa0001950:CDS
GTTGAGTAAGGTTGGTAGAA+AGG 0.446649 1_1:-3724897 Msa0001950:CDS
TGGTGCTAAATTGGTTAGAC+AGG 0.448444 1_1:-3726443 Msa0001950:CDS
TTGCGTTCAAAAGGTGGAGT+TGG 0.448665 1_1:-3717896 Msa0001950:intron
GATTTGGTTGGTGTTACTCT+TGG 0.449977 1_1:-3718426 Msa0001950:CDS
CTCACTGTCTGTAACAAAGT+AGG 0.452915 1_1:+3716155 None:intergenic
CTCACTGTCTGTAACAAAGT+AGG 0.452915 1_1:+3724787 None:intergenic
ATTGCAGCACTTAAGGCTCC+TGG 0.453971 1_1:-3715854 Msa0001950:CDS
ATTGCAGCACTTAAGGCTCC+TGG 0.453971 1_1:-3724484 Msa0001950:CDS
CGTTCAAAAGGTGGAGTTGG+AGG 0.454662 1_1:-3717893 Msa0001950:intron
CCAGGTGGTTAGATGTTGCT+TGG 0.456438 1_1:-3713723 Msa0001950:intron
GGACTTAGCTTAGACAAAGC+TGG 0.456634 1_1:-3724258 Msa0001950:CDS
CTTAATTTGTGAAACTCGCT+TGG 0.457406 1_1:+3724146 None:intergenic
ACAAATTAAGAACCAAATTG+AGG 0.459257 1_1:-3724133 Msa0001950:intron
GCCTGCCAAATCATTTGTCT+TGG 0.460705 1_1:+3717825 None:intergenic
GCCTGCCAAATCATTTGTCT+TGG 0.460705 1_1:+3726414 None:intergenic
TCTTATTGCAGAAGGTGTTA+AGG 0.461521 1_1:-3717767 Msa0001950:intron
TCTTATTGCAGAAGGTGTTA+AGG 0.461521 1_1:-3726356 Msa0001950:intron
TGGTGCTAAATTGGTTAGAC+AGG 0.463771 1_1:-3717854 Msa0001950:CDS
AGAAGATGGGAATGAAGAAA+TGG 0.465700 1_1:+3727342 None:intergenic
TTGCCAACAGGTGCAGCCTC+AGG 0.467059 1_1:+3713635 None:intergenic
GAAAGGATTGCAAAACTGTC+TGG 0.467114 1_1:-3723772 Msa0001950:CDS
AAAGGTGGAGTTGGAGGATC+CGG 0.467134 1_1:-3717887 Msa0001950:intron
GAAAGGATTGCAAAACTGTC+TGG 0.467785 1_1:-3715163 Msa0001950:CDS
TTTGTTGAAATACAACTCCT+TGG 0.469848 1_1:+3727249 None:intergenic
TGCCAAATCATTTGTCTTGG+CGG 0.470595 1_1:+3717828 None:intergenic
TACATACCTGAATTGTCCAT+TGG 0.470599 1_1:+3721361 None:intergenic
GAGTTGCATTTCAACAAAGA+TGG 0.471240 1_1:-3718580 Msa0001950:CDS
ACAGCCGTCTGTCCTACATT+TGG 0.471551 1_1:+3720887 None:intergenic
TTAGCACCAATATTCTCAAC+CGG 0.473308 1_1:+3717868 None:intergenic
GAAAGATTAAGTCACCTTTG+TGG 0.473592 1_1:+3723553 None:intergenic
AGGGTATTGTAGTTGGTGGT+GGG 0.474079 1_1:-3714846 Msa0001950:CDS
GGAGGATGAAACTATTAGGT+AGG 0.475875 1_1:+3727504 None:intergenic
GAGTTGTATTTCAACAAAGA+TGG 0.475978 1_1:-3727244 Msa0001950:CDS
GATTTGGTTGGTGTTACTCT+TGG 0.477460 1_1:-3727089 Msa0001950:CDS
GCCTTAGCTTAGACAAAGCT+GGG 0.479147 1_1:-3715627 Msa0001950:CDS
TATGAAGATTTGATGTCTGC+TGG 0.479231 1_1:-3714359 Msa0001950:CDS
TTTGTTGAAATGCAACTCCT+TGG 0.479417 1_1:+3718585 None:intergenic
GACTTAGCTTAGACAAAGCT+GGG 0.483882 1_1:-3724257 Msa0001950:CDS
GATAGCTGAGGCGTTGAGTA+AGG 0.484566 1_1:-3716277 Msa0001950:CDS
GATAGCTGAGGCGTTGAGTA+AGG 0.484566 1_1:-3724909 Msa0001950:CDS
GTCTGTCCTACATTTGGACT+TGG 0.486866 1_1:+3720893 None:intergenic
CCAGGTGGTCAGATGTTGCT+TGG 0.488161 1_1:-3721473 Msa0001950:intron
TAAACAAACACACACCTCTC+TGG 0.488579 1_1:+3726992 None:intergenic
AAAGATACAACCACAATAGT+TGG 0.489610 1_1:-3715565 Msa0001950:CDS
AAAGATACAACCACAATAGT+TGG 0.489610 1_1:-3724195 Msa0001950:CDS
TGTGTGAAATTGGGAGAAAA+TGG 0.490577 1_1:+3727414 None:intergenic
GCAGGTTGAGGATAGTGAAT+TGG 0.491700 1_1:-3716349 Msa0001950:intron
GCAGGTTGAGGATAGTGAAT+TGG 0.491700 1_1:-3724981 Msa0001950:intron
ATCAAAGGTGGATGCAATCA+AGG 0.491996 1_1:-3723411 Msa0001950:CDS
TGCAAAACTGTCTGGTGGTG+TGG 0.492146 1_1:-3715155 Msa0001950:CDS
TTGGGAGAAAATGGTGGCTA+GGG 0.493368 1_1:+3727423 None:intergenic
CTTTCAGGCCGCTGTTGAGG+AGG 0.494985 1_1:-3723474 Msa0001950:intron
GTTAATAAGATCCCTTGCAT+TGG 0.496312 1_1:+3715988 None:intergenic
GTTAATAAGATCCCTTGCAT+TGG 0.496312 1_1:+3724618 None:intergenic
TTAATTTCAGAGGGTAGCTA+AGG 0.496676 1_1:+3714551 None:intergenic
TGGCAATATCATCAAGGTAC+TGG 0.496736 1_1:+3715813 None:intergenic
TGGCAATATCATCAAGGTAC+TGG 0.496736 1_1:+3724443 None:intergenic
CTCTTGCGTTCTCCAAATCC+AGG 0.496984 1_1:+3715836 None:intergenic
CTCTTGCGTTCTCCAAATCC+AGG 0.496984 1_1:+3724466 None:intergenic
TTGTTGCTCAGAATTGAGAA+TGG 0.499615 1_1:+3727483 None:intergenic
TGCCAAATCATTTGTCTTGG+CGG 0.501395 1_1:+3726417 None:intergenic
TCGCTCTCACCAGGAAGAAT+CGG 0.502728 1_1:-3727294 Msa0001950:CDS
TTACTTTCAGGCCGCTGTTG+AGG 0.503371 1_1:-3723477 Msa0001950:intron
CCTGGAGAGAGCGACGGTAC+TGG 0.505757 1_1:+3718639 None:intergenic
ACATACCTGAATTGTCCATT+GGG 0.507022 1_1:+3721362 None:intergenic
ATTGGGAGAAAATGGTGGCT+AGG 0.507501 1_1:+3727422 None:intergenic
GGTGTTACTCTTGGTCCTAA+GGG 0.507915 1_1:-3718417 Msa0001950:CDS
GGTGTTACTCTTGGTCCTAA+GGG 0.507915 1_1:-3727080 Msa0001950:CDS
CCAGTACCGTCGCTCTCTCC+AGG 0.507934 1_1:-3718639 Msa0001950:CDS
TTTGCTCAGACTTGCATCAA+AGG 0.510939 1_1:-3714818 Msa0001950:CDS
TTTGCTCAGACTTGCATCAA+AGG 0.510939 1_1:-3723426 Msa0001950:CDS
TGCAGAACAAGATTATGAAA+AGG 0.511288 1_1:-3715197 Msa0001950:CDS
TGCAGAACAAGATTATGAAA+AGG 0.511288 1_1:-3723806 Msa0001950:CDS
AAATGGAAGCGGATGAAGAA+AGG 0.511333 1_1:+3727359 None:intergenic
GCCAAGACAAATGATTTGGC+AGG 0.513756 1_1:-3717826 Msa0001950:CDS
AGGGTATTGTAGTTGGCGGT+GGG 0.514410 1_1:-3723454 Msa0001950:CDS
GCTCAGGGTCTTATTGCAGA+AGG 0.514992 1_1:-3726364 Msa0001950:CDS
TTACCAACAGGTGCAGCCTC+AGG 0.516329 1_1:+3721385 None:intergenic
TTGTCCATAGGGTTGCCAAC+AGG 0.519465 1_1:+3713623 None:intergenic
TTGAGTAAGGTTGGTAGAAA+GGG 0.519613 1_1:-3716264 Msa0001950:CDS
TTGAGTAAGGTTGGTAGAAA+GGG 0.519613 1_1:-3724896 Msa0001950:CDS
GAGGATGAAACTATTAGGTA+GGG 0.520347 1_1:+3727505 None:intergenic
ACAAATGATTTGGCAGGCGA+TGG 0.521838 1_1:-3717820 Msa0001950:CDS
ACAAATGATTTGGCAGGCGA+TGG 0.521838 1_1:-3726409 Msa0001950:CDS
TCCATATCTCGTATCGTCGT+TGG 0.522924 1_1:+3714403 None:intergenic
TCTCCTAAGATTGTTAATGA+TGG 0.522934 1_1:-3718363 Msa0001950:CDS
TCTCCTAAGATTGTTAATGA+TGG 0.522934 1_1:-3727026 Msa0001950:CDS
CTTAGACAAAGCTGGGAATG+AGG 0.523660 1_1:-3715620 Msa0001950:CDS
CTTAGACAAAGCTGGGAATG+AGG 0.523660 1_1:-3724250 Msa0001950:CDS
TCACTGTCTGTAACAAAGTA+GGG 0.525001 1_1:+3716156 None:intergenic
TCACTGTCTGTAACAAAGTA+GGG 0.525001 1_1:+3724788 None:intergenic
GGTTCTAGGCACTGCGGCCA+AGG 0.525331 1_1:-3715599 Msa0001950:CDS
GGTTCTAGGCACTGCGGCCA+AGG 0.525331 1_1:-3724229 Msa0001950:CDS
TCCCAGCTTTGTCTAAGCTA+AGG 0.526799 1_1:+3715626 None:intergenic
CCTTTAGGCCGCTGTTGAAG+AGG 0.527246 1_1:-3714866 Msa0001950:intron
TGCCATGGTTGTGTGAAATT+GGG 0.529653 1_1:+3727405 None:intergenic
TCCGTATCTCGTATCGTCGT+TGG 0.531135 1_1:+3722996 None:intergenic
CCAGCAACGTCGCTCTCACC+AGG 0.531654 1_1:-3727303 Msa0001950:CDS
GCCAAGACAAATGATTTGGC+AGG 0.531683 1_1:-3726415 Msa0001950:CDS
TAAAGTCTCCGCCATGGCCA+AGG 0.533355 1_1:-3718602 Msa0001950:CDS
ATCTTTGGTGAGCACCACCT+TGG 0.533468 1_1:+3715582 None:intergenic
ATCTTTGGTGAGCACCACCT+TGG 0.533468 1_1:+3724212 None:intergenic
AGAACAACATTCCTTCCCTT+AGG 0.535555 1_1:+3718402 None:intergenic
AGAACAACATTCCTTCCCTT+AGG 0.535555 1_1:+3727065 None:intergenic
ATACCACGTGTGATAAGCAC+AGG 0.537355 1_1:+3717617 None:intergenic
ATACCACGTGTGATAAGCAC+AGG 0.537355 1_1:+3726204 None:intergenic
GTTGAAGAGGGTATTGTAGT+TGG 0.538398 1_1:-3714853 Msa0001950:CDS
TGGGAATGAAGAAATGGAAG+CGG 0.541881 1_1:+3727348 None:intergenic
AAAAGGAGAAGTTGAACGAA+AGG 0.543334 1_1:-3715180 Msa0001950:CDS
GATGTGGCAGCAGTTAGTGC+AGG 0.549028 1_1:-3716324 Msa0001950:CDS
GATGTGGCAGCAGTTAGTGC+AGG 0.549028 1_1:-3724956 Msa0001950:CDS
TGCACCTGTTGGCAACCCTA+TGG 0.550758 1_1:-3713627 Msa0001950:CDS
TTATAAACCTCCTGTCAAGA+TGG 0.550939 1_1:+3715793 None:intergenic
TTATAAACCTCCTGTCAAGA+TGG 0.550939 1_1:+3724423 None:intergenic
CTTTAGGCCGCTGTTGAAGA+GGG 0.553599 1_1:-3714865 Msa0001950:intron
GCTCAAGGTCTTATTGCAGA+AGG 0.554354 1_1:-3717775 Msa0001950:CDS
ACTTCCATCACCAACTATTG+TGG 0.557957 1_1:+3715555 None:intergenic
ACTTCCATCACCAACTATTG+TGG 0.557957 1_1:+3724185 None:intergenic
CTAGAGGACGCAATTAGAAA+CGG 0.558599 1_1:-3715962 Msa0001950:CDS
CTAGAGGACGCAATTAGAAA+CGG 0.558599 1_1:-3724592 Msa0001950:CDS
GAACCTGAGGCTGCACCTGT+TGG 0.558717 1_1:-3713638 Msa0001950:CDS
GAGGAGGGTATTGTAGTTGG+CGG 0.560061 1_1:-3723458 Msa0001950:CDS
AAAAGGAGAAGCTGAACGAA+AGG 0.560321 1_1:-3723789 Msa0001950:CDS
TTTCAGGCCGCTGTTGAGGA+GGG 0.565478 1_1:-3723473 Msa0001950:intron
AACAAGCTTGCAGATTTGGT+TGG 0.565866 1_1:-3718438 Msa0001950:CDS
ATGAAGATTTAATGTCGGCT+GGG 0.566175 1_1:-3722951 Msa0001950:CDS
AAACAATCTGTATGTTGTTG+AGG 0.570389 1_1:-3716208 Msa0001950:CDS
AAACAATCTGTATGTTGTTG+AGG 0.570389 1_1:-3724840 Msa0001950:CDS
AACAATCTGTATGTTGTTGA+GGG 0.571719 1_1:-3716207 Msa0001950:CDS
AACAATCTGTATGTTGTTGA+GGG 0.571719 1_1:-3724839 Msa0001950:CDS
GAACCTGAGGCTGCACCTGT+TGG 0.571946 1_1:-3721388 Msa0001950:CDS
AAAGGGTGTCGTTACACTTG+AGG 0.572247 1_1:-3716247 Msa0001950:CDS
AAAATATGAAGATTTAATGT+CGG 0.572459 1_1:-3722956 Msa0001950:CDS
GAAGAGGGTATTGTAGTTGG+TGG 0.573873 1_1:-3714850 Msa0001950:CDS
TATGGATATAATGCTGCCAC+TGG 0.574388 1_1:-3714386 Msa0001950:CDS
CTCCCAATTTCACACAACCA+TGG 0.574818 1_1:-3727407 Msa0001950:exon
ACTTAAACTAATGTCAAAAG+AGG 0.575994 1_1:-3717564 Msa0001950:intron
ACTTAAACTAATGTCAAAAG+AGG 0.575994 1_1:-3726151 Msa0001950:intron
AACAAGCTTGCGGATTTGGT+TGG 0.576745 1_1:-3727101 Msa0001950:CDS
TTCCGCTATCAAGAAACTCC+AGG 0.579355 1_1:-3718557 Msa0001950:intron
TTCCGCTATCAAGAAACTCC+AGG 0.579355 1_1:-3727221 Msa0001950:intron
TGCAAAACTGTCTGGCGGTG+TGG 0.580627 1_1:-3723764 Msa0001950:CDS
GCTGAGGCGTTGAGTAAGGT+TGG 0.581310 1_1:-3716273 Msa0001950:CDS
GCTGAGGCGTTGAGTAAGGT+TGG 0.581310 1_1:-3724905 Msa0001950:CDS
ACATACCTGAATTGTCCATA+GGG 0.583522 1_1:+3713612 None:intergenic
TGGCAGTGTTGTTAGTGAGA+AGG 0.588442 1_1:-3714506 Msa0001950:intron
TGGCAGTGTTGTTAGTGAGA+AGG 0.588442 1_1:-3723108 Msa0001950:intron
TCCAACGACGATACGAGATA+CGG 0.590192 1_1:-3722997 Msa0001950:CDS
TAAAGTCTCAGCCATGGCCA+AGG 0.591758 1_1:-3727266 Msa0001950:CDS
TCTAGGCACTGCGGCCAAGG+TGG 0.592690 1_1:-3715596 Msa0001950:CDS
TCTAGGCACTGCGGCCAAGG+TGG 0.592690 1_1:-3724226 Msa0001950:CDS
TGCTAAATTGGTTAGACAGG+CGG 0.595682 1_1:-3717851 Msa0001950:CDS
TTACTCTTGGTCCTAAGGGA+AGG 0.596314 1_1:-3718413 Msa0001950:CDS
TTACTCTTGGTCCTAAGGGA+AGG 0.596314 1_1:-3727076 Msa0001950:CDS
TACATACCTGAATTGTCCAT+AGG 0.599446 1_1:+3713611 None:intergenic
ACAACCACAATAGTTGGTGA+TGG 0.599514 1_1:-3715559 Msa0001950:CDS
ACAACCACAATAGTTGGTGA+TGG 0.599514 1_1:-3724189 Msa0001950:CDS
GGGTGTCGTTACACTTGAGG+AGG 0.602205 1_1:-3716244 Msa0001950:CDS
GCAGGGAACAATCATGAGGT+AGG 0.602361 1_1:-3716306 Msa0001950:CDS
GCAGGGAACAATCATGAGGT+AGG 0.602361 1_1:-3724938 Msa0001950:CDS
CACCTGGAGTTTCTTGATAG+CGG 0.605493 1_1:+3718555 None:intergenic
CACCTGGAGTTTCTTGATAG+CGG 0.605493 1_1:+3727219 None:intergenic
ATGAAGATTTGATGTCTGCT+GGG 0.605666 1_1:-3714358 Msa0001950:CDS
TCAAGATGGCAATATCATCA+AGG 0.606055 1_1:+3715807 None:intergenic
TCAAGATGGCAATATCATCA+AGG 0.606055 1_1:+3724437 None:intergenic
TCGTGACACTTGAGGAGGGA+AGG 0.606314 1_1:-3724871 Msa0001950:CDS
AGGATGAAACTATTAGGTAG+GGG 0.606720 1_1:+3727506 None:intergenic
GTAGGACCAAGTCCAAATGT+AGG 0.607962 1_1:-3720899 Msa0001950:intron
TTCTCAATTCTGAGCAACAA+AGG 0.608141 1_1:-3727480 Msa0001950:five_prime_UTR
GCTCAGACTTGCATCAAAGG+TGG 0.608186 1_1:-3714815 Msa0001950:CDS
GCTCAGACTTGCATCAAAGG+TGG 0.608186 1_1:-3723423 Msa0001950:CDS
TCGCTCTCTCCAGGAAGAGT+CGG 0.608851 1_1:-3718630 Msa0001950:CDS
GATATTGCCATCTTGACAGG+AGG 0.609386 1_1:-3715800 Msa0001950:intron
GATATTGCCATCTTGACAGG+AGG 0.609386 1_1:-3724430 Msa0001950:intron
GAAATACAACTCCTTGGCCA+TGG 0.609599 1_1:+3727255 None:intergenic
TAATTTCAGAGGGTAGCTAA+GGG 0.611417 1_1:+3714552 None:intergenic
TACAATACCCTCTTCAACAG+CGG 0.611736 1_1:+3714858 None:intergenic
GGAAAAGAAATTGAGAGTTG+AGG 0.612753 1_1:-3723588 Msa0001950:CDS
TCGTTACACTTGAGGAGGGA+AGG 0.613492 1_1:-3716239 Msa0001950:CDS
CTTGCAGTTCTCAAATTCAA+CGG 0.614107 1_1:+3716125 None:intergenic
CTTGCAGTTCTCAAATTCAA+CGG 0.614107 1_1:+3724757 None:intergenic
ACAAACTGAGACAGAACTCA+AGG 0.620054 1_1:-3715001 Msa0001950:CDS
ACAAACTGAGACAGAACTCA+AGG 0.620054 1_1:-3723609 Msa0001950:CDS
ACTGTTATCAGAGAGGAGGT+TGG 0.622682 1_1:-3724279 Msa0001950:CDS
AGGTACTGTTATCAGAGAGG+AGG 0.632407 1_1:-3715653 Msa0001950:CDS
GAAATGCAACTCCTTGGCCA+TGG 0.632735 1_1:+3718591 None:intergenic
CAAATCTTCATATTTGCCAG+TGG 0.633124 1_1:+3714370 None:intergenic
AAGTCCAAATGTAGGACAGA+CGG 0.633215 1_1:-3720891 Msa0001950:CDS
GGATAGTGAATTGGCTGATG+TGG 0.636323 1_1:-3716340 Msa0001950:CDS
GGATAGTGAATTGGCTGATG+TGG 0.636323 1_1:-3724972 Msa0001950:CDS
GAGCCCTAAAGTCTCAGCCA+TGG 0.644700 1_1:-3727272 Msa0001950:CDS
TACAATACCCTCCTCAACAG+CGG 0.645508 1_1:+3723466 None:intergenic
TGGTGTCACTGTTGCCAAAG+AGG 0.646809 1_1:-3718343 Msa0001950:intron
AACCCTGTGCTTATCACACG+TGG 0.648183 1_1:-3717620 Msa0001950:CDS
AACCCTGTGCTTATCACACG+TGG 0.648183 1_1:-3726207 Msa0001950:CDS
GGATAGATTCAATGATGCCA+TGG 0.648370 1_1:+3727390 None:intergenic
TTGCTCAGAATTGAGAATGG+AGG 0.649939 1_1:+3727486 None:intergenic
AGGTACTGTTATCAGAGAGG+AGG 0.651028 1_1:-3724283 Msa0001950:CDS
ACTGTTATCAGAGAGGAGGT+TGG 0.652322 1_1:-3715649 Msa0001950:CDS
ATGCAACTCCTTGGCCATGG+CGG 0.653898 1_1:+3718594 None:intergenic
TGCACCTGTTGGTAACCCAA+TGG 0.655339 1_1:-3721377 Msa0001950:CDS
GGGTGTCGTGACACTTGAGG+AGG 0.655940 1_1:-3724876 Msa0001950:CDS
GAACCTTAAAGTCTCCGCCA+TGG 0.655961 1_1:-3718608 Msa0001950:CDS
GAGGGCATGCAATTTGATCG+AGG 0.658220 1_1:-3716189 Msa0001950:CDS
GAGGGCATGCAATTTGATCG+AGG 0.658220 1_1:-3724821 Msa0001950:CDS
ATGTGGCAGCAGTTAGTGCA+GGG 0.658714 1_1:-3716323 Msa0001950:CDS
ATGTGGCAGCAGTTAGTGCA+GGG 0.658714 1_1:-3724955 Msa0001950:CDS
AAAGGGTGTCGTGACACTTG+AGG 0.659317 1_1:-3724879 Msa0001950:CDS
GGTGAGAGCGACGTTGCTGG+TGG 0.659437 1_1:+3727306 None:intergenic
GGTGTCGTGACACTTGAGGA+GGG 0.659758 1_1:-3724875 Msa0001950:CDS
AGACGCTCTTAACGCTACAA+AGG 0.660955 1_1:-3714959 Msa0001950:intron
GGATGAAGAAAGGTTGCATG+AGG 0.664569 1_1:+3727369 None:intergenic
GAATGGTGTGAACAAGCTTG+CGG 0.665076 1_1:-3727111 Msa0001950:CDS
TGGGATCATTGATCCTACAA+AGG 0.667555 1_1:-3714339 Msa0001950:intron
GGATCTTATTAACATACTAG+AGG 0.670020 1_1:-3715978 Msa0001950:CDS
GGATCTTATTAACATACTAG+AGG 0.670020 1_1:-3724608 Msa0001950:CDS
TGGTGTCACTGTTGCCAGAG+AGG 0.672652 1_1:-3727006 Msa0001950:intron
TGGGATCATTGATCCAACAA+AGG 0.675402 1_1:-3722932 Msa0001950:intron
AGGATTGCAAAACTGTCTGG+CGG 0.685391 1_1:-3723769 Msa0001950:CDS
GGTGTCGTTACACTTGAGGA+GGG 0.689354 1_1:-3716243 Msa0001950:CDS
GGTAGGAAATATGATAGCTG+AGG 0.689740 1_1:-3716289 Msa0001950:CDS
GGTAGGAAATATGATAGCTG+AGG 0.689740 1_1:-3724921 Msa0001950:CDS
GTGAAATTGGGAGAAAATGG+TGG 0.690392 1_1:+3727417 None:intergenic
ACTCTTCCTGGAGAGAGCGA+CGG 0.692153 1_1:+3718633 None:intergenic
GGACGCTCTTAATGCCACAA+AGG 0.695512 1_1:-3723567 Msa0001950:intron
CGTTGAATTTGAGAACTGCA+AGG 0.697779 1_1:-3716124 Msa0001950:intron
CGTTGAATTTGAGAACTGCA+AGG 0.697779 1_1:-3724756 Msa0001950:intron
TACAGGTACTGTTATCAGAG+AGG 0.700067 1_1:-3724286 Msa0001950:intron
TAGTGCAGGGAACAATCATG+AGG 0.700989 1_1:-3716310 Msa0001950:CDS
TAGTGCAGGGAACAATCATG+AGG 0.700989 1_1:-3724942 Msa0001950:CDS
TATAGGTACTGTTATCAGAG+AGG 0.702894 1_1:-3715656 Msa0001950:intron
TGTTGAGATAAAGGAACCTG+AGG 0.713419 1_1:-3713651 Msa0001950:CDS
TGTTGAGATAAAGGAACCTG+AGG 0.713419 1_1:-3721401 Msa0001950:CDS
AGGATTGCAAAACTGTCTGG+TGG 0.719435 1_1:-3715160 Msa0001950:CDS
ACCTTGAGCCAAAACAACAG+AGG 0.725524 1_1:+3717789 None:intergenic
ACCCTGAGCCAAAACAACAG+AGG 0.733850 1_1:+3726378 None:intergenic
TACCACGTGTGATAAGCACA+GGG 0.740125 1_1:+3717618 None:intergenic
TACCACGTGTGATAAGCACA+GGG 0.740125 1_1:+3726205 None:intergenic
GAATGAGGTTCTAGGCACTG+CGG 0.821029 1_1:-3715605 Msa0001950:CDS
GAATGAGGTTCTAGGCACTG+CGG 0.821029 1_1:-3724235 Msa0001950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATATATTTTTGAATAG+GGG + chr1_1:3716606-3716625 None:intergenic 10.0%
!!! GTATAAATATATTTTTGAAT+AGG + chr1_1:3716608-3716627 None:intergenic 10.0%
!!! AAAACTATGATTTTAAATAT+TGG - chr1_1:3717964-3717983 Msa0001950:intron 10.0%
!!! AAACTATGATTTTAAATATT+GGG - chr1_1:3717965-3717984 Msa0001950:intron 10.0%
!! TTAATAAAAGTAAAATATAC+TGG + chr1_1:3718251-3718270 None:intergenic 10.0%
!!! TAATTATTATTGAACATTTT+TGG - chr1_1:3719479-3719498 Msa0001950:intron 10.0%
!!! AAAAAAACATTTTTTTTCAT+AGG + chr1_1:3720049-3720068 None:intergenic 10.0%
!!! AAAGAAAAAATAAATCTTTT+TGG + chr1_1:3721786-3721805 None:intergenic 10.0%
!! CATAAAAAAAGAAAAAAAAA+AGG + chr1_1:3722159-3722178 None:intergenic 10.0%
!!! TTAAAAAATGAGAAATATTT+TGG - chr1_1:3723663-3723682 Msa0001950:intron 10.0%
!!! AGTTTTTTTTATTTTTCATA+TGG - chr1_1:3724316-3724335 Msa0001950:intron 10.0%
!! AAAATATGATATTATATACT+AGG - chr1_1:3725731-3725750 Msa0001950:intron 10.0%
!!! ATTTAAAATAAAAAACAAGT+CGG + chr1_1:3727140-3727159 None:intergenic 10.0%
!! ATACAATTATTCTATTTATA+GGG - chr1_1:3727488-3727507 Msa0001950:five_prime_UTR 10.0%
!!! TCACATATTTTTTATTTTAT+AGG - chr1_1:3727513-3727532 Msa0001950:five_prime_UTR 10.0%
!!! TTTACTTGAATTATTGTTTT+TGG - chr1_1:3712335-3712354 Msa0001950:intron 15.0%
!!! TTTACTTGAATTATTGTTTT+AGG - chr1_1:3712335-3712354 Msa0001950:intron 15.0%
!!! TTTTTAGTGAATTAATAATG+TGG - chr1_1:3712505-3712524 Msa0001950:intron 15.0%
!!! TTTTAGTGAATTAATAATGT+GGG - chr1_1:3712506-3712525 Msa0001950:intron 15.0%
!!! AGAGTGAAATTTTATTTTAT+AGG - chr1_1:3712794-3712813 Msa0001950:intron 15.0%
!!! ATTTTTATTACACATGTTAT+GGG - chr1_1:3712950-3712969 Msa0001950:intron 15.0%
!!! AAAAAAAAAAAAACTGACTT+TGG + chr1_1:3713413-3713432 None:intergenic 15.0%
!!! TTCTTTTTTATGAATTGAAA+TGG - chr1_1:3713531-3713550 Msa0001950:intron 15.0%
!!! GTTTTTGTAAATAAATAGTT+AGG - chr1_1:3713744-3713763 Msa0001950:intron 15.0%
!!! GTTTTTTTAGATTGATTAAT+TGG - chr1_1:3713766-3713785 Msa0001950:intron 15.0%
!! ACTATTAATGTAAAAAACAT+AGG + chr1_1:3713944-3713963 None:intergenic 15.0%
!!! TTAAAAAATGCGAAATATTT+TGG - chr1_1:3715033-3715052 Msa0001950:intron 15.0%
!! ATAACTTTATAATTAAAACG+TGG - chr1_1:3715834-3715853 Msa0001950:CDS 15.0%
!! AAAATATGAAGATTTAATGT+CGG - chr1_1:3716085-3716104 Msa0001950:intron 15.0%
!! AATTTCCTTAAAAAAAATTG+TGG - chr1_1:3716740-3716759 Msa0001950:intron 15.0%
!! TCCATTATTAATTAATAACA+CGG + chr1_1:3717733-3717752 None:intergenic 15.0%
!!! AATAAACAATGGTATTTTTT+TGG + chr1_1:3717886-3717905 None:intergenic 15.0%
!! TATTGAAAAAGATATACAAA+AGG - chr1_1:3718347-3718366 Msa0001950:CDS 15.0%
!!! ATTAACTTGATTTGATTTTT+AGG - chr1_1:3719557-3719576 Msa0001950:intron 15.0%
!!! TATAATGCTTTTTTTTTTGT+AGG - chr1_1:3719680-3719699 Msa0001950:intron 15.0%
!! ATGTTAAATATCAACATATT+TGG + chr1_1:3719991-3720010 None:intergenic 15.0%
!!! TGTTTTTTTTTTTCCTTTTT+AGG - chr1_1:3720060-3720079 Msa0001950:intron 15.0%
!!! GTTTTTTTTTTTCCTTTTTA+GGG - chr1_1:3720061-3720080 Msa0001950:intron 15.0%
!!! AATATGATATGATTTGATTT+TGG - chr1_1:3720087-3720106 Msa0001950:intron 15.0%
!! ATGAAATGAAACTATATATT+AGG + chr1_1:3720195-3720214 None:intergenic 15.0%
!!! ATTATATCACTTTATCTTTT+TGG - chr1_1:3721904-3721923 Msa0001950:intron 15.0%
!!! CTTATCAAATTATTTTGTAA+TGG - chr1_1:3721963-3721982 Msa0001950:intron 15.0%
!!! TTTACAAAAAAAACAGATTT+TGG + chr1_1:3722079-3722098 None:intergenic 15.0%
!!! TCTTTTTTTATGAATTGAAA+TGG - chr1_1:3722167-3722186 Msa0001950:intron 15.0%
!!! GTTTTTGTAAATAAATAGTT+AGG - chr1_1:3713744-3713763 Msa0001950:intron 15.0%
!!! GTTTTTTTAGATTGATTAAT+TGG - chr1_1:3713766-3713785 Msa0001950:intron 15.0%
!! ACTATTAATGTAAAAAACAT+AGG + chr1_1:3713944-3713963 None:intergenic 15.0%
!! GATAAATTAATGAACATTAT+GGG + chr1_1:3724121-3724140 None:intergenic 15.0%
!!! TGTTAGTTTTGATTAAATTT+TGG - chr1_1:3724824-3724843 Msa0001950:CDS 15.0%
!!! AATAAATGATGGTATTTTTT+TGG + chr1_1:3725652-3725671 None:intergenic 15.0%
!! ATAAATAGAGAAATTGTTAT+GGG + chr1_1:3726203-3726222 None:intergenic 15.0%
!!! TTTCAAATAATTCTCTTTTA+AGG + chr1_1:3726591-3726610 None:intergenic 15.0%
!! AAAGAGAATTATTTGAAAAT+TGG - chr1_1:3726593-3726612 Msa0001950:intron 15.0%
!!! GAATAATTGTATCTAATTTT+GGG + chr1_1:3727480-3727499 None:intergenic 15.0%
!!! AGAATAATTGTATCTAATTT+TGG + chr1_1:3727481-3727500 None:intergenic 15.0%
!! GATACAATTATTCTATTTAT+AGG - chr1_1:3727487-3727506 Msa0001950:five_prime_UTR 15.0%
!!! TTCACTTGAATTATTGTTTT+TGG - chr1_1:3712157-3712176 Msa0001950:intron 20.0%
!!! TTTTTAGTGAATTAGTTATG+TGG - chr1_1:3712233-3712252 Msa0001950:intron 20.0%
!!! TTTTAGTGAATTAGTTATGT+GGG - chr1_1:3712234-3712253 Msa0001950:intron 20.0%
!!! TTCACTTGAATTATTGTTTT+TGG - chr1_1:3712157-3712176 Msa0001950:intron 20.0%
!!! TATTTATTTTGTCTGAGTTT+AGG - chr1_1:3712303-3712322 Msa0001950:intron 20.0%
!!! ATTTATTTTGTCTGAGTTTA+GGG - chr1_1:3712304-3712323 Msa0001950:intron 20.0%
!! TTTAGTGAATTAATAATGTG+GGG - chr1_1:3712507-3712526 Msa0001950:intron 20.0%
!!! TAAAATTTCACTCTAAAATG+AGG + chr1_1:3712788-3712807 None:intergenic 20.0%
!!! CATTTTTATTACACATGTTA+TGG - chr1_1:3712949-3712968 Msa0001950:intron 20.0%
!!! TTTTTTTCTCAATTAGATGT+AGG - chr1_1:3713322-3713341 Msa0001950:intron 20.0%
!!! TTTTTTCTCAATTAGATGTA+GGG - chr1_1:3713323-3713342 Msa0001950:intron 20.0%
!!! AAAAAATTAGCCTTCAATTA+TGG - chr1_1:3713563-3713582 Msa0001950:intron 20.0%
!!! AAAAATTAGCCTTCAATTAT+GGG - chr1_1:3713564-3713583 Msa0001950:intron 20.0%
!! AAAAAAAGTCTACATTATAC+AGG - chr1_1:3715161-3715180 Msa0001950:CDS 20.0%
!! AAAATGTCTACATATTCTAT+AGG - chr1_1:3715211-3715230 Msa0001950:intron 20.0%
!! AAAAATATCTCCATATAAAG+GGG + chr1_1:3715727-3715746 None:intergenic 20.0%
!! GAAAAATATCTCCATATAAA+GGG + chr1_1:3715728-3715747 None:intergenic 20.0%
!! TATAAAGTTATAATCAGTGT+CGG + chr1_1:3715825-3715844 None:intergenic 20.0%
!!! TTTTTGCTATTAATTTCAGA+GGG + chr1_1:3715900-3715919 None:intergenic 20.0%
!!! TTTTTTGCTATTAATTTCAG+AGG + chr1_1:3715901-3715920 None:intergenic 20.0%
!! AAATTAATAGCAAAAAATGC+TGG - chr1_1:3715904-3715923 Msa0001950:CDS 20.0%
!!! TAAATTAAACTTAGCTTGTA+GGG - chr1_1:3716216-3716235 Msa0001950:CDS 20.0%
!!! CATTATAAATGGTTTGTATA+TGG - chr1_1:3716246-3716265 Msa0001950:CDS 20.0%
!!! CTTGTGTTTTGATTAAATTT+TGG - chr1_1:3716273-3716292 Msa0001950:CDS 20.0%
!! TTCCTTAGAAAAATTGTATT+TGG - chr1_1:3716354-3716373 Msa0001950:intron 20.0%
!!! TTTTAAAAACTGACAATAAG+AGG + chr1_1:3716670-3716689 None:intergenic 20.0%
!!! TACATCCACAATTTTTTTTA+AGG + chr1_1:3716748-3716767 None:intergenic 20.0%
!! TATAATATCATCATCACATT+CGG - chr1_1:3716897-3716916 Msa0001950:intron 20.0%
!!! TTTTTGCTTATATTTGTGAT+CGG + chr1_1:3716940-3716959 None:intergenic 20.0%
!!! TAAGCAAAAATTCACTTTTT+AGG + chr1_1:3717039-3717058 None:intergenic 20.0%
!! ACTAGAACATAAAATAAATC+AGG + chr1_1:3717370-3717389 None:intergenic 20.0%
!!! ACCGTGTTATTAATTAATAA+TGG - chr1_1:3717729-3717748 Msa0001950:intron 20.0%
!! ATACACTTATTCTACTTATA+GGG - chr1_1:3718372-3718391 Msa0001950:CDS 20.0%
!! GATACAATTGTACTATTTAT+AGG - chr1_1:3718424-3718443 Msa0001950:CDS 20.0%
!! AAAAATAGAGATTCTGTTAT+GGG + chr1_1:3718629-3718648 None:intergenic 20.0%
!! TCAATACATAATCAATTTCT+GGG + chr1_1:3718912-3718931 None:intergenic 20.0%
!!! CTTTACTCTAATTTTATTTG+AGG + chr1_1:3720022-3720041 None:intergenic 20.0%
!! TTCAATTGAGTTATTGTATT+TGG - chr1_1:3720805-3720824 Msa0001950:intron 20.0%
!!! TTTACTTGAATTGTTGTTTT+TGG - chr1_1:3720943-3720962 Msa0001950:intron 20.0%
!! TTTAGTGAATTAGTTATATG+TGG - chr1_1:3721096-3721115 Msa0001950:intron 20.0%
!! TAACTAATAAATGCTTGATT+TGG - chr1_1:3721324-3721343 Msa0001950:intron 20.0%
!!! AGAGTGAAATTTCATTTTAT+AGG - chr1_1:3721381-3721400 Msa0001950:CDS 20.0%
!! TACACAAAAAAACAAGAAAA+CGG + chr1_1:3721508-3721527 None:intergenic 20.0%
!! CAAAATATGCAAAAAAATGT+GGG + chr1_1:3721579-3721598 None:intergenic 20.0%
!!! CACATTTTTTTGCATATTTT+GGG - chr1_1:3721578-3721597 Msa0001950:intron 20.0%
!!! ACATTTTTTTGCATATTTTG+GGG - chr1_1:3721579-3721598 Msa0001950:intron 20.0%
!!! TTTTTTCTCAATTTAGATGT+AGG - chr1_1:3721988-3722007 Msa0001950:intron 20.0%
!!! TTTTTCTCAATTTAGATGTA+GGG - chr1_1:3721989-3722008 Msa0001950:intron 20.0%
!! CAGATTTGTAAATTATGAAA+TGG - chr1_1:3722240-3722259 Msa0001950:intron 20.0%
!! ATTTGTAAATTATGAAATGG+AGG - chr1_1:3722243-3722262 Msa0001950:intron 20.0%
!! AGTTTAAATGAAAAAGATGA+GGG + chr1_1:3714015-3714034 None:intergenic 20.0%
!! AAGTTTAAATGAAAAAGATG+AGG + chr1_1:3714016-3714035 None:intergenic 20.0%
!! AAAATGTCTACATATTATAC+AGG - chr1_1:3723820-3723839 Msa0001950:intron 20.0%
!! GGATAAATTAATGAACATTA+TGG + chr1_1:3724122-3724141 None:intergenic 20.0%
!!! TCATTAATTTATCCTTTTAC+TGG - chr1_1:3724128-3724147 Msa0001950:intron 20.0%
!!! TTTTTGCTATTAATTTCAGA+GGG + chr1_1:3715900-3715919 None:intergenic 20.0%
!!! TTTTTTGCTATTAATTTCAG+AGG + chr1_1:3715901-3715920 None:intergenic 20.0%
!! AAATTAATAGCAAAAAATGC+TGG - chr1_1:3715904-3715923 Msa0001950:CDS 20.0%
!! GTATAAAAATTGGCTAAATT+TGG - chr1_1:3724557-3724576 Msa0001950:CDS 20.0%
!! TACTAGAGAAAAAAAAATAC+AGG + chr1_1:3724745-3724764 None:intergenic 20.0%
!!! TAAATTAAACTTAGCTTGTA+GGG - chr1_1:3716216-3716235 Msa0001950:CDS 20.0%
!!! CATTATAAATGGTTTGTATA+TGG - chr1_1:3716246-3716265 Msa0001950:CDS 20.0%
!! TTCCTTAAAAAAATTGTATG+TGG - chr1_1:3724907-3724926 Msa0001950:CDS 20.0%
!!! ACGATTTTTAAAACAATTCT+TGG - chr1_1:3725060-3725079 Msa0001950:intron 20.0%
!! AATAGAAAGTTAAAACTCAA+AGG - chr1_1:3726082-3726101 Msa0001950:intron 20.0%
!! CATAAATAGAGAAATTGTTA+TGG + chr1_1:3726204-3726223 None:intergenic 20.0%
!!! TTTTTTATTTTATAGGCTAC+AGG - chr1_1:3727520-3727539 Msa0001950:five_prime_UTR 20.0%
!!! TTTTTATTTTATAGGCTACA+GGG - chr1_1:3727521-3727540 Msa0001950:five_prime_UTR 20.0%
!!! TTTGTGTTTTTGTTACAGAA+TGG - chr1_1:3711913-3711932 Msa0001950:intron 25.0%
! ACATCACAGAATTAAAAAAC+AGG + chr1_1:3712081-3712100 None:intergenic 25.0%
! TTTAGTGAATTAGTTATGTG+GGG - chr1_1:3712235-3712254 Msa0001950:intron 25.0%
!!! TTTTTGGTGAATTAGTTATG+TGG - chr1_1:3712351-3712370 Msa0001950:intron 25.0%
!! TTTTGGTGAATTAGTTATGT+GGG - chr1_1:3712352-3712371 Msa0001950:intron 25.0%
!!! TTTTAGGTGAATTAGTTATG+TGG - chr1_1:3712428-3712447 Msa0001950:intron 25.0%
! TGTTTACATTTGCGTTAAAA+AGG - chr1_1:3712547-3712566 Msa0001950:intron 25.0%
! TAAGTAACTAATAATGTGCT+TGG - chr1_1:3712731-3712750 Msa0001950:intron 25.0%
! ACTTAAACTAATGTCAAAAG+AGG - chr1_1:3712890-3712909 Msa0001950:intron 25.0%
! GAAGCAAAGGAAAAAAAAAT+TGG + chr1_1:3713179-3713198 None:intergenic 25.0%
! TGAAGAAATGATAATCAATG+AGG - chr1_1:3713248-3713267 Msa0001950:intron 25.0%
! GAAGAAATGATAATCAATGA+GGG - chr1_1:3713249-3713268 Msa0001950:intron 25.0%
! AAGAAATGATAATCAATGAG+GGG - chr1_1:3713250-3713269 Msa0001950:intron 25.0%
!! TTTTTCTCAATTAGATGTAG+GGG - chr1_1:3713324-3713343 Msa0001950:intron 25.0%
! CATGAACTAAACCAAATTTA+TGG - chr1_1:3713358-3713377 Msa0001950:intron 25.0%
! ACTAAACCAAATTTATGGTT+CGG - chr1_1:3713363-3713382 Msa0001950:intron 25.0%
!! TTTTATAAACCCGTTCAATT+TGG - chr1_1:3713449-3713468 Msa0001950:intron 25.0%
! TAATTTCAACCCATAATTGA+AGG + chr1_1:3713576-3713595 None:intergenic 25.0%
! CAGATTTGTAAATTATGAAG+TGG - chr1_1:3713604-3713623 Msa0001950:intron 25.0%
!! TTTATTGTTTCTCAAAACTG+GGG + chr1_1:3713687-3713706 None:intergenic 25.0%
!! GTTTATTGTTTCTCAAAACT+GGG + chr1_1:3713688-3713707 None:intergenic 25.0%
! TATACAAGTGCATCTAAATA+GGG + chr1_1:3713833-3713852 None:intergenic 25.0%
! ATATACAAGTGCATCTAAAT+AGG + chr1_1:3713834-3713853 None:intergenic 25.0%
! ATTTAAACTTAGAAGAGTTG+TGG - chr1_1:3714026-3714045 Msa0001950:intron 25.0%
! TGGCAAAGATAATAATAAGT+TGG + chr1_1:3714333-3714352 None:intergenic 25.0%
!! TAAGTAAAAACACAAGTTGA+TGG + chr1_1:3714353-3714372 None:intergenic 25.0%
! TAAACCAAAAAAGGAACAAA+GGG + chr1_1:3714700-3714719 None:intergenic 25.0%
! ACAAATTAAGAACCAAATTG+AGG - chr1_1:3714908-3714927 Msa0001950:intron 25.0%
! TTACTTATTCTTCATGTACA+AGG + chr1_1:3715005-3715024 None:intergenic 25.0%
!! TCATTAATTCATCCTTTTAC+CGG - chr1_1:3715520-3715539 Msa0001950:CDS 25.0%
!! TTTTTCTTCATCATTTGCAA+GGG + chr1_1:3715659-3715678 None:intergenic 25.0%
! AAAATATCTCCATATAAAGG+GGG + chr1_1:3715726-3715745 None:intergenic 25.0%
! CGAAAAATATCTCCATATAA+AGG + chr1_1:3715729-3715748 None:intergenic 25.0%
!! ATGGAGATATTTTTCGTTTT+AGG - chr1_1:3715733-3715752 Msa0001950:intron 25.0%
!! TAGTGAGAAGGTATAAAAAT+CGG - chr1_1:3715945-3715964 Msa0001950:CDS 25.0%
! GTATAAAAATCGGCTAAATT+TGG - chr1_1:3715955-3715974 Msa0001950:CDS 25.0%
!! TATGTAACTTGTATATTGGT+AGG - chr1_1:3716016-3716035 Msa0001950:CDS 25.0%
! AATCTATAAATCACCTTTGT+TGG + chr1_1:3716125-3716144 None:intergenic 25.0%
!!! GTAAATTAAACTTAGCTTGT+AGG - chr1_1:3716215-3716234 Msa0001950:CDS 25.0%
! ACAAACCATTTATAATGATG+CGG + chr1_1:3716243-3716262 None:intergenic 25.0%
!! CTCCAAATACAATTTTTCTA+AGG + chr1_1:3716359-3716378 None:intergenic 25.0%
! CTTAGAAAAATTGTATTTGG+AGG - chr1_1:3716357-3716376 Msa0001950:intron 25.0%
! GAAATTATGAAGAGAGAAAT+AGG - chr1_1:3716451-3716470 Msa0001950:intron 25.0%
!!! AGTAGATTTGAAGTATTGTT+TGG - chr1_1:3716514-3716533 Msa0001950:intron 25.0%
! CTGTGTAATTCGTATATTAA+TGG + chr1_1:3716825-3716844 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr1_1:3716975-3716994 Msa0001950:intron 25.0%
! CATTGAATAAATGATGTATG+TGG + chr1_1:3717014-3717033 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - chr1_1:3717049-3717068 Msa0001950:intron 25.0%
! ATGTATAAGAAATGAAAGCA+AGG - chr1_1:3717121-3717140 Msa0001950:intron 25.0%
! TGTATAAGAAATGAAAGCAA+GGG - chr1_1:3717122-3717141 Msa0001950:intron 25.0%
! AAACAAACAGACTATTAATG+TGG - chr1_1:3717335-3717354 Msa0001950:intron 25.0%
! AACAAACAGACTATTAATGT+GGG - chr1_1:3717336-3717355 Msa0001950:intron 25.0%
!!! TATGTTCTAGTTTCTTGATT+AGG - chr1_1:3717379-3717398 Msa0001950:intron 25.0%
!!! ATGTTCTAGTTTCTTGATTA+GGG - chr1_1:3717380-3717399 Msa0001950:intron 25.0%
! ATTCTATGACGATTCTTAAA+AGG - chr1_1:3717421-3717440 Msa0001950:intron 25.0%
! AGAGTAATAGGAATAAACAA+TGG + chr1_1:3717897-3717916 None:intergenic 25.0%
! CCTTAAAATTCAAGATTCTT+AGG + chr1_1:3717942-3717961 None:intergenic 25.0%
!! CCTAAGAATCTTGAATTTTA+AGG - chr1_1:3717939-3717958 Msa0001950:intron 25.0%
!! ATCTTTTTGTAAAACGTTGT+TGG - chr1_1:3717998-3718017 Msa0001950:intron 25.0%
! TATTACATCGAAAAAATAGG+AGG + chr1_1:3718098-3718117 None:intergenic 25.0%
! GTGTATTACATCGAAAAAAT+AGG + chr1_1:3718101-3718120 None:intergenic 25.0%
! TTTCGATGTAATACACAATT+TGG - chr1_1:3718105-3718124 Msa0001950:intron 25.0%
!!! TTGGTAGCTATTTTATTTGT+AGG - chr1_1:3718124-3718143 Msa0001950:intron 25.0%
! CTTGAGCTAATAATTGAAAA+AGG - chr1_1:3718208-3718227 Msa0001950:intron 25.0%
! GATACACTTATTCTACTTAT+AGG - chr1_1:3718371-3718390 Msa0001950:CDS 25.0%
! TTAAGAATGTTAGTTCATTC+TGG + chr1_1:3718581-3718600 None:intergenic 25.0%
! CAAAAATAGAGATTCTGTTA+TGG + chr1_1:3718630-3718649 None:intergenic 25.0%
! GTCAATACATAATCAATTTC+TGG + chr1_1:3718913-3718932 None:intergenic 25.0%
!!! TTGTTATCTTTTTCAAACCT+TGG - chr1_1:3719101-3719120 Msa0001950:intron 25.0%
!! TAAAAAGATGGATTCATATC+AGG + chr1_1:3719238-3719257 None:intergenic 25.0%
!!! TATAAAAAAGTGTCAGGTTT+TGG + chr1_1:3719830-3719849 None:intergenic 25.0%
!!! AAACCTGACACTTTTTTATA+AGG - chr1_1:3719830-3719849 Msa0001950:intron 25.0%
!!! AATCCTTATAAAAAAGTGTC+AGG + chr1_1:3719836-3719855 None:intergenic 25.0%
! ATGTTGAAGAAAAAAAGCAA+GGG + chr1_1:3719904-3719923 None:intergenic 25.0%
! TATGTTGAAGAAAAAAAGCA+AGG + chr1_1:3719905-3719924 None:intergenic 25.0%
!! ATATCAACATATTTGGTAGT+TGG + chr1_1:3719984-3720003 None:intergenic 25.0%
! TATCATATTAGTCCCTAAAA+AGG + chr1_1:3720076-3720095 None:intergenic 25.0%
! TGAAACTATATATTAGGTAG+AGG + chr1_1:3720189-3720208 None:intergenic 25.0%
!!! TTTGTGTTTTTGTTACAGAA+TGG - chr1_1:3711913-3711932 Msa0001950:intron 25.0%
! GAATTTGTATGAATTTGTCT+AGG - chr1_1:3720780-3720799 Msa0001950:intron 25.0%
!! TTTACTTGAATCACTGTTTT+TGG - chr1_1:3720865-3720884 Msa0001950:intron 25.0%
!! TTTTGGTGAATTAGTTATGT+AGG - chr1_1:3712352-3712371 Msa0001950:intron 25.0%
! TTTGGTGAATTAGTTATGTA+GGG - chr1_1:3720883-3720902 Msa0001950:intron 25.0%
! TTGTTTGTGAATTAGTTATG+TGG - chr1_1:3721017-3721036 Msa0001950:intron 25.0%
!!! TTTGCTTGTTGTTACATAAT+TGG - chr1_1:3721348-3721367 Msa0001950:intron 25.0%
!!! TTGCTTGTTGTTACATAATT+GGG - chr1_1:3721349-3721368 Msa0001950:intron 25.0%
! ACTTAAACTAATGTCAAAAG+AGG - chr1_1:3712890-3712909 Msa0001950:intron 25.0%
!! GTTTAAGCATTTTTATTCCA+CGG - chr1_1:3721533-3721552 Msa0001950:intron 25.0%
!! TTTAAGCATTTTTATTCCAC+GGG - chr1_1:3721534-3721553 Msa0001950:intron 25.0%
! CCAAAATATGCAAAAAAATG+TGG + chr1_1:3721580-3721599 None:intergenic 25.0%
!!! CCACATTTTTTTGCATATTT+TGG - chr1_1:3721577-3721596 Msa0001950:intron 25.0%
! TGTAGAAATGATAATCAATG+AGG - chr1_1:3721860-3721879 Msa0001950:intron 25.0%
! GTAGAAATGATAATCAATGA+GGG - chr1_1:3721861-3721880 Msa0001950:intron 25.0%
! TAGAAATGATAATCAATGAG+GGG - chr1_1:3721862-3721881 Msa0001950:intron 25.0%
!!! TTTATCTTTTTGGTTGTGTA+CGG - chr1_1:3721914-3721933 Msa0001950:intron 25.0%
!! TTTTCTCAATTTAGATGTAG+GGG - chr1_1:3721990-3722009 Msa0001950:intron 25.0%
!!! ATCTGTTTTTTTTGTAAACC+CGG - chr1_1:3722081-3722100 Msa0001950:intron 25.0%
!! TTTATTGTTTCTCAAAACTG+GGG + chr1_1:3713687-3713706 None:intergenic 25.0%
!! GTTTATTGTTTCTCAAAACT+GGG + chr1_1:3713688-3713707 None:intergenic 25.0%
! TATACAAGTGCATCTAAATA+GGG + chr1_1:3713833-3713852 None:intergenic 25.0%
! ATATACAAGTGCATCTAAAT+AGG + chr1_1:3713834-3713853 None:intergenic 25.0%
! ATTTAAACTTAGAAGAGTTG+TGG - chr1_1:3714026-3714045 Msa0001950:intron 25.0%
! TGGCAAAGATAATAATAAGT+TGG + chr1_1:3714333-3714352 None:intergenic 25.0%
!! TAAGTAAAAACACAAGTTGA+TGG + chr1_1:3714353-3714372 None:intergenic 25.0%
!!! TTCTTCATTTGTTCCTTTTT+TGG - chr1_1:3723323-3723342 Msa0001950:intron 25.0%
! ACAAATTAAGAACCAAATAG+AGG - chr1_1:3723538-3723557 Msa0001950:intron 25.0%
! TTACTTATTCTTCATGTACA+AGG + chr1_1:3715005-3715024 None:intergenic 25.0%
!!! TTTTGTTTTGTTACGAGTAT+AGG - chr1_1:3724010-3724029 Msa0001950:intron 25.0%
!! TTTTTCTTCATCATTTGCAA+GGG + chr1_1:3715659-3715678 None:intergenic 25.0%
!! ATGGAGATAATTTTCGTTTT+AGG - chr1_1:3724335-3724354 Msa0001950:intron 25.0%
!! TAGTGAGAAGGTATAAAAAT+TGG - chr1_1:3715945-3715964 Msa0001950:CDS 25.0%
!! TGCTGATGTAATTTGTATAT+CGG - chr1_1:3724605-3724624 Msa0001950:CDS 25.0%
! AATCTATAAATCACCTTTGT+AGG + chr1_1:3716125-3716144 None:intergenic 25.0%
!!! GTAAATTAAACTTAGCTTGT+AGG - chr1_1:3716215-3716234 Msa0001950:CDS 25.0%
! ACAAACCATTTATAATGATG+CGG + chr1_1:3716243-3716262 None:intergenic 25.0%
!!! CTCCACATACAATTTTTTTA+AGG + chr1_1:3724912-3724931 None:intergenic 25.0%
! CTTAAAAAAATTGTATGTGG+AGG - chr1_1:3724910-3724929 Msa0001950:CDS 25.0%
! ATACATTTCCATTATTGACA+CGG + chr1_1:3725507-3725526 None:intergenic 25.0%
! AGAGTAATAGGAATAAATGA+TGG + chr1_1:3725663-3725682 None:intergenic 25.0%
! CCTTAAAATTCAAGATTCTT+AGG + chr1_1:3717942-3717961 None:intergenic 25.0%
!! CCTAAGAATCTTGAATTTTA+AGG - chr1_1:3717939-3717958 Msa0001950:intron 25.0%
!! CATATTTTGTAAAACGTTGT+TGG - chr1_1:3725761-3725780 Msa0001950:intron 25.0%
! TCGATAAAAGTAAAATATGC+TGG + chr1_1:3726017-3726036 None:intergenic 25.0%
! AAGTTAAAACTCAAAGGAAT+TGG - chr1_1:3726088-3726107 Msa0001950:intron 25.0%
! TGTTGCCAAATCAAAATAAT+TGG - chr1_1:3726243-3726262 Msa0001950:intron 25.0%
! GTTGCCAAATCAAAATAATT+GGG - chr1_1:3726244-3726263 Msa0001950:intron 25.0%
!!! TGATCCCAATTATTTTGATT+TGG + chr1_1:3726251-3726270 None:intergenic 25.0%
! TCAATACATAATCAACTTCA+CGG + chr1_1:3726298-3726317 None:intergenic 25.0%
! TGTGAACAATACAAGAATAT+GGG - chr1_1:3726338-3726357 Msa0001950:intron 25.0%
! AAGAATTCTCATATAGGAAA+GGG + chr1_1:3726382-3726401 None:intergenic 25.0%
! AGAATTATTTGAAAATTGGC+AGG - chr1_1:3726597-3726616 Msa0001950:intron 25.0%
! GAATTATTTGAAAATTGGCA+GGG - chr1_1:3726598-3726617 Msa0001950:intron 25.0%
! AACAATCTCTACTAAAAAAG+AGG + chr1_1:3726640-3726659 None:intergenic 25.0%
! GAATAAGAAGGAAAATCTTT+GGG - chr1_1:3726880-3726899 Msa0001950:intron 25.0%
! AGAAATAGATCGAAATTATG+TGG - chr1_1:3726937-3726956 Msa0001950:intron 25.0%
!! TTTACAAAATTTAAGGTGAG+CGG + chr1_1:3727284-3727303 None:intergenic 25.0%
! CTAATCTTCTCATTTCAATT+TGG + chr1_1:3727336-3727355 None:intergenic 25.0%
! CAAATTGAAATGAGAAGATT+AGG - chr1_1:3727334-3727353 Msa0001950:CDS 25.0%
TTTGTTGAAATACAACTCCT+TGG + chr1_1:3711795-3711814 None:intergenic 30.0%
GAGTTGTATTTCAACAAAGA+TGG - chr1_1:3711797-3711816 Msa0001950:intron 30.0%
!!! TTCGTTTTTTGAGCATGATT+GGG + chr1_1:3711855-3711874 None:intergenic 30.0%
!!! TTTCGTTTTTTGAGCATGAT+TGG + chr1_1:3711856-3711875 None:intergenic 30.0%
TCTCCTAAGATTGTTAATGA+TGG - chr1_1:3712015-3712034 Msa0001950:intron 30.0%
ACACCATCATTAACAATCTT+AGG + chr1_1:3712021-3712040 None:intergenic 30.0%
TTTGGTGAATTAGTTATGTG+GGG - chr1_1:3712353-3712372 Msa0001950:intron 30.0%
TTACATTTGCGTTAAAAAGG+TGG - chr1_1:3712550-3712569 Msa0001950:intron 30.0%
!! TGAGAATATTGGTGCTAAAT+TGG - chr1_1:3712589-3712608 Msa0001950:intron 30.0%
AACTAATAATGTGCTTGGTT+TGG - chr1_1:3712736-3712755 Msa0001950:intron 30.0%
!! TTTGCTTGTTGTTACATGAT+TGG - chr1_1:3712760-3712779 Msa0001950:intron 30.0%
!! TTGCTTGTTGTTACATGATT+GGG - chr1_1:3712761-3712780 Msa0001950:intron 30.0%
GTTAAACAATGTAATCCCAA+AGG + chr1_1:3713059-3713078 None:intergenic 30.0%
TATGAAACACAAACACCTTT+GGG - chr1_1:3713089-3713108 Msa0001950:intron 30.0%
! GATTTTGAACCAAATTGAAC+GGG + chr1_1:3713461-3713480 None:intergenic 30.0%
! CGATTTTGAACCAAATTGAA+CGG + chr1_1:3713462-3713481 None:intergenic 30.0%
! CGTTCAATTTGGTTCAAAAT+CGG - chr1_1:3713460-3713479 Msa0001950:intron 30.0%
AATCATATGAATAGCAGAAG+AGG - chr1_1:3713637-3713656 Msa0001950:CDS 30.0%
ATCATATGAATAGCAGAAGA+GGG - chr1_1:3713638-3713657 Msa0001950:CDS 30.0%
! GGTTTATTGTTTCTCAAAAC+TGG + chr1_1:3713689-3713708 None:intergenic 30.0%
AAGTTATAGTTCATGTGAAC+CGG - chr1_1:3713794-3713813 Msa0001950:intron 30.0%
ATACAAGTGCATCTAAATAG+GGG + chr1_1:3713832-3713851 None:intergenic 30.0%
AAACAATCTGTATGTTGTTG+AGG - chr1_1:3714201-3714220 Msa0001950:intron 30.0%
AACAATCTGTATGTTGTTGA+GGG - chr1_1:3714202-3714221 Msa0001950:intron 30.0%
ACAAAAAGATATCCAATGCA+AGG - chr1_1:3714411-3714430 Msa0001950:CDS 30.0%
CAAAAAGATATCCAATGCAA+GGG - chr1_1:3714412-3714431 Msa0001950:CDS 30.0%
GGATCTTATTAACATACTAG+AGG - chr1_1:3714433-3714452 Msa0001950:intron 30.0%
CCTCTGCAATTATCAAAATA+GGG + chr1_1:3714478-3714497 None:intergenic 30.0%
TCCTCTGCAATTATCAAAAT+AGG + chr1_1:3714479-3714498 None:intergenic 30.0%
CTAAACCAAAAAAGGAACAA+AGG + chr1_1:3714701-3714720 None:intergenic 30.0%
AACTATTGTGGTTGTATCTT+TGG + chr1_1:3714847-3714866 None:intergenic 30.0%
AAAGATACAACCACAATAGT+TGG - chr1_1:3714846-3714865 Msa0001950:CDS 30.0%
TGCCATGCAAACAATATTTA+GGG + chr1_1:3714966-3714985 None:intergenic 30.0%
ATGCCATGCAAACAATATTT+AGG + chr1_1:3714967-3714986 None:intergenic 30.0%
TGCAGAACAAGATTATGAAA+AGG - chr1_1:3715235-3715254 Msa0001950:intron 30.0%
!! TTGTGTTTTGTTACGAGTAT+AGG - chr1_1:3715402-3715421 Msa0001950:intron 30.0%
AAACTATGAGCTTATAGAAC+CGG + chr1_1:3715542-3715561 None:intergenic 30.0%
CTCATAGTTTCTTTACTTTC+AGG - chr1_1:3715552-3715571 Msa0001950:CDS 30.0%
! CTTTTTCTTCATCATTTGCA+AGG + chr1_1:3715660-3715679 None:intergenic 30.0%
!!! GTTTTTTTTCCCCCTTTATA+TGG - chr1_1:3715714-3715733 Msa0001950:intron 30.0%
ACAAGTCAATAACACTTTCA+AGG + chr1_1:3715760-3715779 None:intergenic 30.0%
CAAACCATTTATAATGATGC+GGG + chr1_1:3716242-3716261 None:intergenic 30.0%
CATGATTTAAGAACCTCATT+TGG + chr1_1:3716306-3716325 None:intergenic 30.0%
AATTGTATTTGGAGGATGTT+AGG - chr1_1:3716365-3716384 Msa0001950:intron 30.0%
AAGAGAAGAAGAAGAGAAAT+AGG - chr1_1:3716540-3716559 Msa0001950:intron 30.0%
AATGCTCAATTTCTTCAGTT+TGG + chr1_1:3717269-3717288 None:intergenic 30.0%
AGTTTCTTGATTAGGGAAAT+TGG - chr1_1:3717387-3717406 Msa0001950:intron 30.0%
GTTTCTTGATTAGGGAAATT+GGG - chr1_1:3717388-3717407 Msa0001950:intron 30.0%
TTTCTTGATTAGGGAAATTG+GGG - chr1_1:3717389-3717408 Msa0001950:intron 30.0%
GAGTAGAAAGTTATACTCAT+AGG - chr1_1:3718315-3718334 Msa0001950:intron 30.0%
! TATAGGGAATCGTTTTGTAA+AGG - chr1_1:3718388-3718407 Msa0001950:CDS 30.0%
TATTTATAGGAGCTCATTGT+CGG - chr1_1:3718437-3718456 Msa0001950:CDS 30.0%
!!! TTTTTTTTTTGCTTTCGCAC+CGG - chr1_1:3718712-3718731 Msa0001950:intron 30.0%
TGTGAAATGATTGCACAAAA+TGG + chr1_1:3719304-3719323 None:intergenic 30.0%
CAAAATATAAGATGAGCAGA+TGG + chr1_1:3719401-3719420 None:intergenic 30.0%
! CATCTGCTCATCTTATATTT+TGG - chr1_1:3719399-3719418 Msa0001950:intron 30.0%
TCTCCTAAGATTGTTAATGA+TGG - chr1_1:3712015-3712034 Msa0001950:intron 30.0%
ACACCATCATTAACAATCTT+AGG + chr1_1:3712021-3712040 None:intergenic 30.0%
!! TATTTGATTTGTCTGAGTTC+AGG - chr1_1:3720833-3720852 Msa0001950:intron 30.0%
!! ATTTGATTTGTCTGAGTTCA+GGG - chr1_1:3720834-3720853 Msa0001950:intron 30.0%
!! ATTTAATTTGTCCGAGTGTA+AGG - chr1_1:3720972-3720991 Msa0001950:intron 30.0%
!! TTTAATTTGTCCGAGTGTAA+GGG - chr1_1:3720973-3720992 Msa0001950:intron 30.0%
!! TGAGAATATTGGTGCTAAAT+TGG - chr1_1:3712589-3712608 Msa0001950:intron 30.0%
!! TGCTTGTTGTTACATAATTG+GGG - chr1_1:3721350-3721369 Msa0001950:intron 30.0%
AAAAAAATGTGGGAAGTTTG+TGG + chr1_1:3721569-3721588 None:intergenic 30.0%
TATGAAACACAAACACCTTT+GGG - chr1_1:3713089-3713108 Msa0001950:intron 30.0%
CATGAACTGAACCAAATTTA+TGG - chr1_1:3722024-3722043 Msa0001950:intron 30.0%
ACTGAACCAAATTTATGGTT+CGG - chr1_1:3722029-3722048 Msa0001950:intron 30.0%
! ATTTTGAATCGTATTGAACC+GGG + chr1_1:3722102-3722121 None:intergenic 30.0%
! GATTTTGAATCGTATTGAAC+CGG + chr1_1:3722103-3722122 None:intergenic 30.0%
GGTTCAATACGATTCAAAAT+CGG - chr1_1:3722102-3722121 Msa0001950:intron 30.0%
!! AAAACATTAGCCTTCAATTC+TGG - chr1_1:3722199-3722218 Msa0001950:intron 30.0%
!! AAACATTAGCCTTCAATTCT+GGG - chr1_1:3722200-3722219 Msa0001950:intron 30.0%
TAATTTCAACCCAGAATTGA+AGG + chr1_1:3722212-3722231 None:intergenic 30.0%
AATCATATGAATAGCAGAAG+AGG - chr1_1:3713637-3713656 Msa0001950:CDS 30.0%
ATCATATGAATAGCAGAAGA+GGG - chr1_1:3713638-3713657 Msa0001950:CDS 30.0%
! GGTTTATTGTTTCTCAAAAC+TGG + chr1_1:3713689-3713708 None:intergenic 30.0%
AAGTTATAGTTCATGTGAAC+CGG - chr1_1:3713794-3713813 Msa0001950:intron 30.0%
ATACAAGTGCATCTAAATAG+GGG + chr1_1:3713832-3713851 None:intergenic 30.0%
AAACAATCTGTATGTTGTTG+AGG - chr1_1:3714201-3714220 Msa0001950:intron 30.0%
AACAATCTGTATGTTGTTGA+GGG - chr1_1:3714202-3714221 Msa0001950:intron 30.0%
ACAAAAAGATATCCAATGCA+AGG - chr1_1:3714411-3714430 Msa0001950:CDS 30.0%
CAAAAAGATATCCAATGCAA+GGG - chr1_1:3714412-3714431 Msa0001950:CDS 30.0%
GGATCTTATTAACATACTAG+AGG - chr1_1:3714433-3714452 Msa0001950:intron 30.0%
CCTCTGCAATTATCAAAATA+GGG + chr1_1:3714478-3714497 None:intergenic 30.0%
TCCTCTGCAATTATCAAAAT+AGG + chr1_1:3714479-3714498 None:intergenic 30.0%
!!! TTGTTCCTTTTTTGGTTTAG+CGG - chr1_1:3714701-3714720 Msa0001950:intron 30.0%
TATCTTCCCAATTCACTTAT+AGG - chr1_1:3723368-3723387 Msa0001950:intron 30.0%
ACAGTACCTATAAGTGAATT+GGG + chr1_1:3723377-3723396 None:intergenic 30.0%
AACAGTACCTATAAGTGAAT+TGG + chr1_1:3723378-3723397 None:intergenic 30.0%
AACTATTGTGGTTGTATCTT+TGG + chr1_1:3714847-3714866 None:intergenic 30.0%
AAAGATACAACCACAATAGT+TGG - chr1_1:3714846-3714865 Msa0001950:CDS 30.0%
!! CCATGCAAACAATTTTTAAG+GGG + chr1_1:3723594-3723613 None:intergenic 30.0%
! GCCATGCAAACAATTTTTAA+GGG + chr1_1:3723595-3723614 None:intergenic 30.0%
! TGCCATGCAAACAATTTTTA+AGG + chr1_1:3723596-3723615 None:intergenic 30.0%
TGCAGAACAAGATTATGAAA+AGG - chr1_1:3715235-3715254 Msa0001950:intron 30.0%
! TGATTTGCAGAGAAGTTAAA+AGG + chr1_1:3723974-3723993 None:intergenic 30.0%
! CTCATATTTTCTTCACCTTT+AGG - chr1_1:3724160-3724179 Msa0001950:CDS 30.0%
! CTTTTTCTTCATCATTTGCA+AGG + chr1_1:3715660-3715679 None:intergenic 30.0%
! GATGTAATTTGTATATCGGT+AGG - chr1_1:3724609-3724628 Msa0001950:CDS 30.0%
CAAACCATTTATAATGATGC+GGG + chr1_1:3716242-3716261 None:intergenic 30.0%
TGATTTAAGAACCTCGTATT+TGG + chr1_1:3724857-3724876 None:intergenic 30.0%
TCATGCATATTGTTGCAAAA+TGG - chr1_1:3716321-3716340 Msa0001950:CDS 30.0%
!! TAAATTTGTTGAAGTCTCAC+TGG - chr1_1:3724953-3724972 Msa0001950:CDS 30.0%
AGTTTCTTGATTAGGGAAAT+TGG - chr1_1:3717387-3717406 Msa0001950:intron 30.0%
GTTTCTTGATTAGGGAAATT+GGG - chr1_1:3717388-3717407 Msa0001950:intron 30.0%
TTTCTTGATTAGGGAAATTG+GGG - chr1_1:3717389-3717408 Msa0001950:intron 30.0%
TGTATCACATCGGAAAAAAT+AGG + chr1_1:3725864-3725883 None:intergenic 30.0%
!!! CTGGTTGCTATTTTATTTGT+AGG - chr1_1:3725888-3725907 Msa0001950:intron 30.0%
CTTGAGCTAATAATCGAAAA+AGG - chr1_1:3725974-3725993 Msa0001950:intron 30.0%
AACTATTCTATACATGTTCC+TGG - chr1_1:3726036-3726055 Msa0001950:intron 30.0%
AATGTTAGTTCATTCTGTTG+AGG + chr1_1:3726150-3726169 None:intergenic 30.0%
TAGAGAAATTGTTATGGGAA+CGG + chr1_1:3726198-3726217 None:intergenic 30.0%
! ATTGGGATCATGCTTTTATT+TGG - chr1_1:3726261-3726280 Msa0001950:intron 30.0%
GTGTGAACAATACAAGAATA+TGG - chr1_1:3726337-3726356 Msa0001950:intron 30.0%
GAAGAATTCTCATATAGGAA+AGG + chr1_1:3726383-3726402 None:intergenic 30.0%
! TCACGTTGGACATTTTTAAA+AGG + chr1_1:3726427-3726446 None:intergenic 30.0%
CTCTTCCTATATAGTTAAGT+CGG - chr1_1:3726537-3726556 Msa0001950:intron 30.0%
! TTGTAGTTTGTGTGAAAATG+TGG - chr1_1:3726709-3726728 Msa0001950:intron 30.0%
GTGACATAATATTTGCCATA+TGG - chr1_1:3726807-3726826 Msa0001950:intron 30.0%
! ATCGGGAAATTTTCAAATGT+TGG + chr1_1:3726837-3726856 None:intergenic 30.0%
AACATTTGAAAATTTCCCGA+TGG - chr1_1:3726836-3726855 Msa0001950:intron 30.0%
TCCTCCAAATACAACATAAA+GGG + chr1_1:3726862-3726881 None:intergenic 30.0%
TTCCTCCAAATACAACATAA+AGG + chr1_1:3726863-3726882 None:intergenic 30.0%
TTGTATTTGGAGGAATAAGA+AGG - chr1_1:3726868-3726887 Msa0001950:intron 30.0%
GGAATAAGAAGGAAAATCTT+TGG - chr1_1:3726879-3726898 Msa0001950:intron 30.0%
! AGAGATCATATTTCTGAACT+AGG - chr1_1:3719043-3719062 Msa0001950:intron 30.0%
! GAGATCATATTTCTGAACTA+GGG - chr1_1:3719044-3719063 Msa0001950:intron 30.0%
! AGATCATATTTCTGAACTAG+GGG - chr1_1:3726964-3726983 Msa0001950:intron 30.0%
CTAAGTGGTTAATCTTACTA+AGG + chr1_1:3727030-3727049 None:intergenic 30.0%
TAGATAACCATAAGTTAACG+TGG + chr1_1:3727062-3727081 None:intergenic 30.0%
!! TCTTTTCATTGATTGTTCTC+AGG + chr1_1:3727201-3727220 None:intergenic 30.0%
ATGATTCCCTATAAGTTTGA+GGG + chr1_1:3727444-3727463 None:intergenic 30.0%
TATGATTCCCTATAAGTTTG+AGG + chr1_1:3727445-3727464 None:intergenic 30.0%
AGGATGAAACTATTAGGTAG+GGG + chr1_1:3711538-3711557 None:intergenic 35.0%
GAGGATGAAACTATTAGGTA+GGG + chr1_1:3711539-3711558 None:intergenic 35.0%
GAATGGAGGATGAAACTATT+AGG + chr1_1:3711544-3711563 None:intergenic 35.0%
TTGTTGCTCAGAATTGAGAA+TGG + chr1_1:3711561-3711580 None:intergenic 35.0%
TTCTCAATTCTGAGCAACAA+AGG - chr1_1:3711561-3711580 Msa0001950:intron 35.0%
!! GGTTTAAGAGGATTTGGTTT+TGG + chr1_1:3711600-3711619 None:intergenic 35.0%
TGTGTGAAATTGGGAGAAAA+TGG + chr1_1:3711630-3711649 None:intergenic 35.0%
AGAAGATGGGAATGAAGAAA+TGG + chr1_1:3711702-3711721 None:intergenic 35.0%
TGTTTAATTCGTCCGAGTTT+AGG - chr1_1:3712185-3712204 Msa0001950:intron 35.0%
GTTTAATTCGTCCGAGTTTA+GGG - chr1_1:3712186-3712205 Msa0001950:intron 35.0%
AAAATCCTTGACCCTAAACT+CGG + chr1_1:3712200-3712219 None:intergenic 35.0%
! ATTAGTTATGTGGGGTGTTT+AGG - chr1_1:3712243-3712262 Msa0001950:intron 35.0%
! TTAGTTATGTGGGGTGTTTA+GGG - chr1_1:3712244-3712263 Msa0001950:intron 35.0%
!!! TGGAGTGTTTGTTTTGATGT+TGG - chr1_1:3712448-3712467 Msa0001950:intron 35.0%
!!! GGAGTGTTTGTTTTGATGTT+GGG - chr1_1:3712449-3712468 Msa0001950:intron 35.0%
!!! TGTTTTGATGTTGGGTGTTT+AGG - chr1_1:3712457-3712476 Msa0001950:intron 35.0%
!! GTTTTGATGTTGGGTGTTTA+GGG - chr1_1:3712458-3712477 Msa0001950:intron 35.0%
TTAGCACCAATATTCTCAAC+TGG + chr1_1:3712587-3712606 None:intergenic 35.0%
!! AACTACTACCTCTGTTGTTT+TGG - chr1_1:3712655-3712674 Msa0001950:intron 35.0%
!! TCTTATTGCAGAAGGTGTTA+AGG - chr1_1:3712685-3712704 Msa0001950:intron 35.0%
!!! GGTAGACTTGTTATGAGTTT+TGG - chr1_1:3712706-3712725 Msa0001950:intron 35.0%
!! TGCTTGTTGTTACATGATTG+GGG - chr1_1:3712762-3712781 Msa0001950:intron 35.0%
! ATTTTATAGGTTGTTGCAGC+TGG - chr1_1:3712807-3712826 Msa0001950:intron 35.0%
!!! TCCCACTTTTTTGCTTATTC+TGG - chr1_1:3712984-3713003 Msa0001950:intron 35.0%
GCCAGAATAAGCAAAAAAGT+GGG + chr1_1:3712988-3713007 None:intergenic 35.0%
!! CAAAGGTGTTTGTGTTTCAT+AGG + chr1_1:3713090-3713109 None:intergenic 35.0%
CTATGAAACACAAACACCTT+TGG - chr1_1:3713088-3713107 Msa0001950:intron 35.0%
ACTGAACCGAACCATAAATT+TGG + chr1_1:3713372-3713391 None:intergenic 35.0%
TTGGTTCAAAATCGGTGAAT+TGG - chr1_1:3713468-3713487 Msa0001950:intron 35.0%
TCATATGAATAGCAGAAGAG+GGG - chr1_1:3713639-3713658 Msa0001950:CDS 35.0%
!! TTGAGTAAGGTTGGTAGAAA+GGG - chr1_1:3714145-3714164 Msa0001950:intron 35.0%
TCACTGTCTGTAACAAAGTA+GGG + chr1_1:3714256-3714275 None:intergenic 35.0%
CTTGCAGTTCTCAAATTCAA+CGG + chr1_1:3714287-3714306 None:intergenic 35.0%
GTTAATAAGATCCCTTGCAT+TGG + chr1_1:3714426-3714445 None:intergenic 35.0%
!!! CCCTATTTTGATAATTGCAG+AGG - chr1_1:3714475-3714494 Msa0001950:intron 35.0%
GGATATTGAACAAGAAGCTT+TGG - chr1_1:3714496-3714515 Msa0001950:intron 35.0%
! CTTGTTGTGAACAAACTTAG+AGG - chr1_1:3714524-3714543 Msa0001950:CDS 35.0%
TCAAGATGGCAATATCATCA+AGG + chr1_1:3714607-3714626 None:intergenic 35.0%
TTATAAACCTCCTGTCAAGA+TGG + chr1_1:3714621-3714640 None:intergenic 35.0%
!!! TTCTCCCTTTGTTCCTTTTT+TGG - chr1_1:3714693-3714712 Msa0001950:intron 35.0%
!!! TCCTTTTTTGGTTTAGCTGT+TGG - chr1_1:3714705-3714724 Msa0001950:intron 35.0%
ACCAACAGCTAAACCAAAAA+AGG + chr1_1:3714709-3714728 None:intergenic 35.0%
TATCTTCCTAATTCGCTTAC+AGG - chr1_1:3714738-3714757 Msa0001950:intron 35.0%
!! CTTAATTTGTGAAACTCGCT+TGG + chr1_1:3714898-3714917 None:intergenic 35.0%
CCATGCAAACAATATTTAGG+GGG + chr1_1:3714964-3714983 None:intergenic 35.0%
GCCATGCAAACAATATTTAG+GGG + chr1_1:3714965-3714984 None:intergenic 35.0%
!! GTTTTGTTACGAGTATAGGT+TGG - chr1_1:3715406-3715425 Msa0001950:intron 35.0%
GGAAAAGAAATTGAGAGTTG+AGG - chr1_1:3715453-3715472 Msa0001950:intron 35.0%
GAAAGATTAAGTCACCTTTG+TGG + chr1_1:3715491-3715510 None:intergenic 35.0%
TTATAATTAAAACGTGGCGC+AGG - chr1_1:3715840-3715859 Msa0001950:CDS 35.0%
GCAAAAAATGCTGGTGTAAA+TGG - chr1_1:3715913-3715932 Msa0001950:CDS 35.0%
TATGAAGATTTAATGTCGGC+TGG - chr1_1:3716089-3716108 Msa0001950:intron 35.0%
! ATGAAGATTTAATGTCGGCT+GGG - chr1_1:3716090-3716109 Msa0001950:intron 35.0%
AGACATGCTACTAAAGATAG+CGG + chr1_1:3716194-3716213 None:intergenic 35.0%
!!! TTTTGGTTTCACACCAAATG+AGG - chr1_1:3716290-3716309 Msa0001950:CDS 35.0%
TGCTTATATTTGTGATCGGA+GGG + chr1_1:3716936-3716955 None:intergenic 35.0%
TTGCTTATATTTGTGATCGG+AGG + chr1_1:3716937-3716956 None:intergenic 35.0%
ACGATTCTTAAAAGGCTTCT+TGG - chr1_1:3717429-3717448 Msa0001950:intron 35.0%
! TAAGAATGTTTTCGCAACAG+AGG + chr1_1:3717603-3717622 None:intergenic 35.0%
! CTGTGTTGTTGTTGAGATAA+AGG - chr1_1:3717631-3717650 Msa0001950:CDS 35.0%
ACATACCTGAATTGTCCATT+GGG + chr1_1:3717682-3717701 None:intergenic 35.0%
TACATACCTGAATTGTCCAT+TGG + chr1_1:3717683-3717702 None:intergenic 35.0%
CAATTCAGGTATGTAGTTTG+CGG - chr1_1:3717688-3717707 Msa0001950:intron 35.0%
ACAGTTACACACAGAGTAAT+AGG + chr1_1:3717909-3717928 None:intergenic 35.0%
! CTTTCTTTTCTCCTAGGATT+CGG - chr1_1:3718031-3718050 Msa0001950:intron 35.0%
TCGAAAAAATAGGAGGACAA+TGG + chr1_1:3718091-3718110 None:intergenic 35.0%
AATGTTAGTTCATTCTGGTG+AGG + chr1_1:3718576-3718595 None:intergenic 35.0%
!!! TCTATTTTTGTTACCCGTGA+AGG - chr1_1:3718640-3718659 Msa0001950:CDS 35.0%
ATGTTGCCAACTCGATAATT+AGG - chr1_1:3718668-3718687 Msa0001950:intron 35.0%
CATGATCCTAATTATCGAGT+TGG + chr1_1:3718677-3718696 None:intergenic 35.0%
! AACGACAAATCAAGTTGCTT+GGG + chr1_1:3718875-3718894 None:intergenic 35.0%
! AAACGACAAATCAAGTTGCT+TGG + chr1_1:3718876-3718895 None:intergenic 35.0%
!! AAGCAACTTGATTTGTCGTT+TGG - chr1_1:3718875-3718894 Msa0001950:intron 35.0%
!! GATTATGTATTGACTACCCT+AGG - chr1_1:3718919-3718938 Msa0001950:intron 35.0%
CAAATAACAGCATGATCCTA+GGG + chr1_1:3718938-3718957 None:intergenic 35.0%
! ATCATGCTGTTATTTGGCTT+TGG - chr1_1:3718942-3718961 Msa0001950:intron 35.0%
!! TCATGCTGTTATTTGGCTTT+GGG - chr1_1:3718943-3718962 Msa0001950:intron 35.0%
GAAAACAAGTTCACTGCTTT+AGG - chr1_1:3718965-3718984 Msa0001950:intron 35.0%
CAGAAATATGATCTCTAGTC+TGG + chr1_1:3719039-3719058 None:intergenic 35.0%
TAGATAGCCATAAGTTAACG+TGG + chr1_1:3719169-3719188 None:intergenic 35.0%
AACAATGAGATGCAAAACGT+AGG + chr1_1:3719195-3719214 None:intergenic 35.0%
TTTGCATCTCATTGTTGCAT+TGG - chr1_1:3719199-3719218 Msa0001950:intron 35.0%
TTGTGCAATCATTTCACATG+AGG - chr1_1:3719306-3719325 Msa0001950:intron 35.0%
GTAGAGGTTTCAATGTTTAG+TGG + chr1_1:3720173-3720192 None:intergenic 35.0%
GTTGCTCAGAAAATTGAGAA+TGG + chr1_1:3720221-3720240 None:intergenic 35.0%
! CTCAATTTTCTGAGCAACAA+AGG - chr1_1:3720223-3720242 Msa0001950:intron 35.0%
!! GGTTTAAGAGGATTTGGTTT+TGG + chr1_1:3711600-3711619 None:intergenic 35.0%
GGATAGATTTAATGATGCCA+TGG + chr1_1:3720315-3720334 None:intergenic 35.0%
AGAAGATGGGAATGAAGAAA+TGG + chr1_1:3711702-3711721 None:intergenic 35.0%
TTTGTTGAAATGCAACTCCT+TGG + chr1_1:3720459-3720478 None:intergenic 35.0%
GAGTTGCATTTCAACAAAGA+TGG - chr1_1:3720461-3720480 Msa0001950:intron 35.0%
CAATAAGAAACACACCTCTT+TGG + chr1_1:3720715-3720734 None:intergenic 35.0%
!!! TAGGGTGTTTGTTTTGATGT+GGG - chr1_1:3720901-3720920 Msa0001950:intron 35.0%
!! TTTTGATGTGGGGTGTTTAA+GGG - chr1_1:3720912-3720931 Msa0001950:intron 35.0%
AAATCTTAGACCCTTACACT+CGG + chr1_1:3720986-3721005 None:intergenic 35.0%
!!! TGGAGTGTTTGTTTTGATGT+GGG - chr1_1:3712448-3712467 Msa0001950:intron 35.0%
TGTTTGCATTTGCGTTCAAA+AGG - chr1_1:3721136-3721155 Msa0001950:intron 35.0%
TTAGCACCAATATTCTCAAC+CGG + chr1_1:3712587-3712606 None:intergenic 35.0%
!! AACTACTACCTCTGTTGTTT+TGG - chr1_1:3712655-3712674 Msa0001950:intron 35.0%
!! TCTTATTGCAGAAGGTGTTA+AGG - chr1_1:3712685-3712704 Msa0001950:intron 35.0%
! ATTTTATAGGTTGTTGCAGC+AGG - chr1_1:3712807-3712826 Msa0001950:intron 35.0%
GTTCATTGCGTAGCAATTAT+TGG - chr1_1:3721603-3721622 Msa0001950:intron 35.0%
!! CAAAGGTGTTTGTGTTTCAT+AGG + chr1_1:3713090-3713109 None:intergenic 35.0%
CTATGAAACACAAACACCTT+TGG - chr1_1:3713088-3713107 Msa0001950:intron 35.0%
ACTGAACCGAACCATAAATT+TGG + chr1_1:3713372-3713391 None:intergenic 35.0%
TCATATGAATAGCAGAAGAG+GGG - chr1_1:3713639-3713658 Msa0001950:CDS 35.0%
!! TTGAGTAAGGTTGGTAGAAA+GGG - chr1_1:3714145-3714164 Msa0001950:intron 35.0%
TCACTGTCTGTAACAAAGTA+GGG + chr1_1:3714256-3714275 None:intergenic 35.0%
CTTGCAGTTCTCAAATTCAA+CGG + chr1_1:3714287-3714306 None:intergenic 35.0%
GTTAATAAGATCCCTTGCAT+TGG + chr1_1:3714426-3714445 None:intergenic 35.0%
!!! CCCTATTTTGATAATTGCAG+AGG - chr1_1:3714475-3714494 Msa0001950:intron 35.0%
GGATATTGAACAAGAAGCTT+TGG - chr1_1:3714496-3714515 Msa0001950:intron 35.0%
! CTTGTTGTGAACAAACTTAG+AGG - chr1_1:3714524-3714543 Msa0001950:CDS 35.0%
TCAAGATGGCAATATCATCA+AGG + chr1_1:3714607-3714626 None:intergenic 35.0%
TTATAAACCTCCTGTCAAGA+TGG + chr1_1:3714621-3714640 None:intergenic 35.0%
! TATAGGTACTGTTATCAGAG+AGG - chr1_1:3723385-3723404 Msa0001950:CDS 35.0%
!! TGCAAACAATTTTTAAGGGG+TGG + chr1_1:3723591-3723610 None:intergenic 35.0%
CCCCTTAAAAATTGTTTGCA+TGG - chr1_1:3723591-3723610 Msa0001950:CDS 35.0%
TTGGAGTTATGCATAACGTT+AGG - chr1_1:3723682-3723701 Msa0001950:intron 35.0%
GTATGCTGCATACATACATT+TGG + chr1_1:3723729-3723748 None:intergenic 35.0%
CATACGAGTGGTCATATATA+AGG - chr1_1:3723744-3723763 Msa0001950:intron 35.0%
AAAAGGAGAAGTTGAACGAA+AGG - chr1_1:3723861-3723880 Msa0001950:intron 35.0%
!! GTTTTGTTACGAGTATAGGT+TGG - chr1_1:3715406-3715425 Msa0001950:intron 35.0%
TTATAATTAAAACGCGACGC+AGG - chr1_1:3724442-3724461 Msa0001950:CDS 35.0%
TAATTTCAGAGGGTAGCTAA+GGG + chr1_1:3724492-3724511 None:intergenic 35.0%
TTAATTTCAGAGGGTAGCTA+AGG + chr1_1:3724493-3724512 None:intergenic 35.0%
GCAAAAAATGCTGGTGTAAA+TGG - chr1_1:3715913-3715932 Msa0001950:CDS 35.0%
CAAATCTTCATATTTGCCAG+TGG + chr1_1:3724674-3724693 None:intergenic 35.0%
TATGAAGATTTGATGTCTGC+TGG - chr1_1:3724682-3724701 Msa0001950:intron 35.0%
ATGAAGATTTGATGTCTGCT+GGG - chr1_1:3724683-3724702 Msa0001950:intron 35.0%
AATTGTATGTGGAGGATGTT+AGG - chr1_1:3724918-3724937 Msa0001950:CDS 35.0%
! TCTCACTGGACTTTTAATGT+GGG - chr1_1:3724967-3724986 Msa0001950:CDS 35.0%
CTTGATACGAAACTTTGACT+TGG - chr1_1:3725168-3725187 Msa0001950:intron 35.0%
TAAGCATTCACACACATAGA+AGG + chr1_1:3725220-3725239 None:intergenic 35.0%
! CTGTGTTGTTGTTGAGATAA+AGG - chr1_1:3717631-3717650 Msa0001950:CDS 35.0%
ACATACCTGAATTGTCCATA+GGG + chr1_1:3725432-3725451 None:intergenic 35.0%
TACATACCTGAATTGTCCAT+AGG + chr1_1:3717683-3717702 None:intergenic 35.0%
TTCTATTGCCGTGTCAATAA+TGG - chr1_1:3725496-3725515 Msa0001950:intron 35.0%
ACAGTTACACACAGAGTAAT+AGG + chr1_1:3717909-3717928 None:intergenic 35.0%
! CTTTCTTTTCTCCTAGGATT+CGG - chr1_1:3718031-3718050 Msa0001950:intron 35.0%
CGGAAAAAATAGGAGGAAAA+TGG + chr1_1:3725854-3725873 None:intergenic 35.0%
ATCACATCGGAAAAAATAGG+AGG + chr1_1:3725861-3725880 None:intergenic 35.0%
AACCAGATTGTGTATCACAT+CGG + chr1_1:3725874-3725893 None:intergenic 35.0%
TCTGTTGAGGATCAATTAGT+TGG + chr1_1:3726137-3726156 None:intergenic 35.0%
AGAGAAATTGTTATGGGAAC+GGG + chr1_1:3726197-3726216 None:intergenic 35.0%
TCTTGTATTGTTCACACTGA+AGG + chr1_1:3726334-3726353 None:intergenic 35.0%
AGGGAGAAGAATTCTCATAT+AGG + chr1_1:3726388-3726407 None:intergenic 35.0%
! ATGAGAATTCTTCTCCCTTT+TGG - chr1_1:3726390-3726409 Msa0001950:CDS 35.0%
AAACATGAGTTAACTCACGT+TGG + chr1_1:3726441-3726460 None:intergenic 35.0%
AACGTGAGTTAACTCATGTT+TGG - chr1_1:3726440-3726459 Msa0001950:CDS 35.0%
TTCCTATATAGTTAAGTCGG+TGG - chr1_1:3726540-3726559 Msa0001950:intron 35.0%
TAAAAAAGAGGACATCACTC+TGG + chr1_1:3726628-3726647 None:intergenic 35.0%
! TAGTTTGTGTGAAAATGTGG+CGG - chr1_1:3726712-3726731 Msa0001950:intron 35.0%
CATGAGGTAAATAAATGCTG+AGG + chr1_1:3726743-3726762 None:intergenic 35.0%
ATAACACTCCTAAGGAAGAA+GGG + chr1_1:3726766-3726785 None:intergenic 35.0%
TATAACACTCCTAAGGAAGA+AGG + chr1_1:3726767-3726786 None:intergenic 35.0%
CACATTCTATAACACTCCTA+AGG + chr1_1:3726774-3726793 None:intergenic 35.0%
TCAAATGTTGGATGACCATA+TGG + chr1_1:3726825-3726844 None:intergenic 35.0%
AATACAACATAAAGGGCCAT+CGG + chr1_1:3726855-3726874 None:intergenic 35.0%
ATGGCCCTTTATGTTGTATT+TGG - chr1_1:3726855-3726874 Msa0001950:intron 35.0%
TGCAAATGTGATGAAAACGT+AGG + chr1_1:3727088-3727107 None:intergenic 35.0%
TGAGAAGATTAGGTAGTTAG+AGG - chr1_1:3727344-3727363 Msa0001950:CDS 35.0%
ATTCTCTCCCTCAAACTTAT+AGG - chr1_1:3727434-3727453 Msa0001950:five_prime_UTR 35.0%
TTCTCTCCCTCAAACTTATA+GGG - chr1_1:3727435-3727454 Msa0001950:five_prime_UTR 35.0%
GGAGGATGAAACTATTAGGT+AGG + chr1_1:3711540-3711559 None:intergenic 40.0%
TTGCTCAGAATTGAGAATGG+AGG + chr1_1:3711558-3711577 None:intergenic 40.0%
GTGAAATTGGGAGAAAATGG+TGG + chr1_1:3711627-3711646 None:intergenic 40.0%
TGCCATGGTTGTGTGAAATT+GGG + chr1_1:3711639-3711658 None:intergenic 40.0%
ATGCCATGGTTGTGTGAAAT+TGG + chr1_1:3711640-3711659 None:intergenic 40.0%
GGATAGATTCAATGATGCCA+TGG + chr1_1:3711654-3711673 None:intergenic 40.0%
AAATGGAAGCGGATGAAGAA+AGG + chr1_1:3711685-3711704 None:intergenic 40.0%
TGGGAATGAAGAAATGGAAG+CGG + chr1_1:3711696-3711715 None:intergenic 40.0%
! TTTTTCTGCGGGAAGAAGAT+GGG + chr1_1:3711715-3711734 None:intergenic 40.0%
!! GATTTGGTTGGTGTTACTCT+TGG - chr1_1:3711952-3711971 Msa0001950:intron 40.0%
AGAACAACATTCCTTCCCTT+AGG + chr1_1:3711979-3711998 None:intergenic 40.0%
GTTGTTCTTGAGAGCAAGTA+TGG - chr1_1:3711991-3712010 Msa0001950:intron 40.0%
TAAACAAACACACACCTCTC+TGG + chr1_1:3712052-3712071 None:intergenic 40.0%
TTGCGTTAAAAAGGTGGAGT+TGG - chr1_1:3712556-3712575 Msa0001950:intron 40.0%
GAGGATCCAGTTGAGAATAT+TGG - chr1_1:3712578-3712597 Msa0001950:intron 40.0%
! TGGTGCTAAATTGGTTAGAC+AGG - chr1_1:3712598-3712617 Msa0001950:intron 40.0%
TGCCAAATCATTTGTCTTGG+CGG + chr1_1:3712627-3712646 None:intergenic 40.0%
GCAAAAAAGTGGGAAGTTTG+AGG + chr1_1:3712978-3712997 None:intergenic 40.0%
CGCCAGAATAAGCAAAAAAG+TGG + chr1_1:3712989-3713008 None:intergenic 40.0%
ATTCGTGCATCGTAGGTATT+AGG + chr1_1:3713035-3713054 None:intergenic 40.0%
!! ACACAAACACCTTTGGGATT+AGG - chr1_1:3713095-3713114 Msa0001950:intron 40.0%
CACTCTTTGGACGTATCTAT+GGG - chr1_1:3713212-3713231 Msa0001950:intron 40.0%
ACTCTTTGGACGTATCTATG+GGG - chr1_1:3713213-3713232 Msa0001950:intron 40.0%
! ATTAGATGTAGGGGTGTGAA+TGG - chr1_1:3713333-3713352 Msa0001950:intron 40.0%
! ATAGGGGTGTGCATAAAAAC+CGG + chr1_1:3713816-3713835 None:intergenic 40.0%
AAAACATAGGACACTGACAC+CGG + chr1_1:3713931-3713950 None:intergenic 40.0%
CAACATGTCTGCATCATGTT+AGG - chr1_1:3713966-3713985 Msa0001950:intron 40.0%
GGTAGGAAATATGATAGCTG+AGG - chr1_1:3714120-3714139 Msa0001950:intron 40.0%
!! GTTGAGTAAGGTTGGTAGAA+AGG - chr1_1:3714144-3714163 Msa0001950:intron 40.0%
CTCACTGTCTGTAACAAAGT+AGG + chr1_1:3714257-3714276 None:intergenic 40.0%
CGTTGAATTTGAGAACTGCA+AGG - chr1_1:3714285-3714304 Msa0001950:intron 40.0%
CTAGAGGACGCAATTAGAAA+CGG - chr1_1:3714449-3714468 Msa0001950:intron 40.0%
ACTGAAGATTGCAGCACTTA+AGG - chr1_1:3714550-3714569 Msa0001950:CDS 40.0%
TGGCAATATCATCAAGGTAC+TGG + chr1_1:3714601-3714620 None:intergenic 40.0%
GATGATATTGCCATCTTGAC+AGG - chr1_1:3714608-3714627 Msa0001950:intron 40.0%
ACAGTACCTGTAAGCGAATT+AGG + chr1_1:3714747-3714766 None:intergenic 40.0%
! TACAGGTACTGTTATCAGAG+AGG - chr1_1:3714755-3714774 Msa0001950:intron 40.0%
GACTTAGCTTAGACAAAGCT+GGG - chr1_1:3714784-3714803 Msa0001950:CDS 40.0%
!! ACAACCACAATAGTTGGTGA+TGG - chr1_1:3714852-3714871 Msa0001950:CDS 40.0%
ACTTCCATCACCAACTATTG+TGG + chr1_1:3714859-3714878 None:intergenic 40.0%
TGCAAACAATATTTAGGGGG+TGG + chr1_1:3714961-3714980 None:intergenic 40.0%
CCCCCTAAATATTGTTTGCA+TGG - chr1_1:3714961-3714980 Msa0001950:CDS 40.0%
!!! TGCGAAATATTTTGGCCTGA+TGG - chr1_1:3715041-3715060 Msa0001950:intron 40.0%
!!! ATATTTTGGCCTGATGGTGT+TGG - chr1_1:3715047-3715066 Msa0001950:intron 40.0%
CTAAATTAGCCCACCCAAAT+TGG + chr1_1:3715129-3715148 None:intergenic 40.0%
AAAAGGAGAAGCTGAACGAA+AGG - chr1_1:3715252-3715271 Msa0001950:intron 40.0%
GAAAGGATTGCAAAACTGTC+TGG - chr1_1:3715269-3715288 Msa0001950:intron 40.0%
TTCAACGAGTTCACTGAGAT+GGG + chr1_1:3715325-3715344 None:intergenic 40.0%
TTTCAACGAGTTCACTGAGA+TGG + chr1_1:3715326-3715345 None:intergenic 40.0%
ACAAACTGAGACAGAACTCA+AGG - chr1_1:3715432-3715451 Msa0001950:intron 40.0%
GAGCTTATAGAACCGGTAAA+AGG + chr1_1:3715535-3715554 None:intergenic 40.0%
TTTGCTCAGACTTGCATCAA+AGG - chr1_1:3715615-3715634 Msa0001950:CDS 40.0%
ATCAAAGGTGGATGCAATCA+AGG - chr1_1:3715630-3715649 Msa0001950:CDS 40.0%
TACGGATATAATGCTGCAAC+TGG - chr1_1:3716062-3716081 Msa0001950:intron 40.0%
TGGGATCATTGATCCAACAA+AGG - chr1_1:3716109-3716128 Msa0001950:intron 40.0%
!! CAGATTTGTTGAAGTGTCAC+TGG - chr1_1:3716400-3716419 Msa0001950:intron 40.0%
!! GAAGTGTCACTGGACTTTTA+CGG - chr1_1:3716410-3716429 Msa0001950:intron 40.0%
ATTAATGGCGAGCAATTTCG+AGG + chr1_1:3716810-3716829 None:intergenic 40.0%
!! TCATCACATTCGGTTTGTTG+TGG - chr1_1:3716907-3716926 Msa0001950:intron 40.0%
!! CATCACATTCGGTTTGTTGT+GGG - chr1_1:3716908-3716927 Msa0001950:intron 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr1_1:3717052-3717071 Msa0001950:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG - chr1_1:3717053-3717072 Msa0001950:intron 40.0%
AGAGAAGGGGTAACATATAC+AGG + chr1_1:3717162-3717181 None:intergenic 40.0%
AGCGAAGAAAATGGAGAGAA+GGG + chr1_1:3717176-3717195 None:intergenic 40.0%
GTCCAGCAGAGAAATCAAAA+AGG - chr1_1:3717196-3717215 Msa0001950:intron 40.0%
!!! CACCTTTTTGATTTCTCTGC+TGG + chr1_1:3717201-3717220 None:intergenic 40.0%
! CAATTTCTTCAGTTTGGTGG+AGG + chr1_1:3717263-3717282 None:intergenic 40.0%
GCTCAATTTCTTCAGTTTGG+TGG + chr1_1:3717266-3717285 None:intergenic 40.0%
GAGTTAGCAAAGAGAGAGAT+AGG + chr1_1:3717297-3717316 None:intergenic 40.0%
AGTGTAGTGTCACACATAGA+AGG + chr1_1:3717481-3717500 None:intergenic 40.0%
TGTTGAGATAAAGGAACCTG+AGG - chr1_1:3717640-3717659 Msa0001950:CDS 40.0%
CGAATCCTAGGAGAAAAGAA+AGG + chr1_1:3718033-3718052 None:intergenic 40.0%
AAGTCCAAATGTAGGACAGA+CGG - chr1_1:3718150-3718169 Msa0001950:intron 40.0%
! AACTGTTTTGTACGTGTTCC+CGG - chr1_1:3718270-3718289 Msa0001950:intron 40.0%
AACCTCTCCGAGATTATTTC+CGG + chr1_1:3718292-3718311 None:intergenic 40.0%
TGGCAACATCAAATCCTTCA+CGG + chr1_1:3718657-3718676 None:intergenic 40.0%
CCAAATAACAGCATGATCCT+AGG + chr1_1:3718939-3718958 None:intergenic 40.0%
CCTAGGATCATGCTGTTATT+TGG - chr1_1:3718936-3718955 Msa0001950:intron 40.0%
AAACCTTGGTAAGATTCACC+AGG - chr1_1:3719115-3719134 Msa0001950:intron 40.0%
TTTCCTGGTGAATCTTACCA+AGG + chr1_1:3719121-3719140 None:intergenic 40.0%
TAAGCTGAGTGATTGTTTCC+TGG + chr1_1:3719136-3719155 None:intergenic 40.0%
ACAGCAACCACGTTAACTTA+TGG - chr1_1:3719159-3719178 Msa0001950:intron 40.0%
TTGTGTGGAATTGGGAGAAA+TGG + chr1_1:3720292-3720311 None:intergenic 40.0%
TTAATGATGCCATGGTTGTG+TGG + chr1_1:3720307-3720326 None:intergenic 40.0%
TGGGAATGAAGAAATGGAAG+CGG + chr1_1:3711696-3711715 None:intergenic 40.0%
TGTGAACAAGCTTGCAGATT+TGG - chr1_1:3720599-3720618 Msa0001950:intron 40.0%
! AACAAGCTTGCAGATTTGGT+TGG - chr1_1:3720603-3720622 Msa0001950:intron 40.0%
!! GATTTGGTTGGTGTTACTCT+TGG - chr1_1:3711952-3711971 Msa0001950:intron 40.0%
AGAACAACATTCCTTCCCTT+AGG + chr1_1:3711979-3711998 None:intergenic 40.0%
GTTGTTCTTGAGAGCAAGTA+TGG - chr1_1:3711991-3712010 Msa0001950:intron 40.0%
!!! GTAGGGTGTTTGTTTTGATG+TGG - chr1_1:3720900-3720919 Msa0001950:intron 40.0%
!!! AGGGTGTTTGTTTTGATGTG+GGG - chr1_1:3720902-3720921 Msa0001950:intron 40.0%
!! GTTTTGATGTGGGGTGTTTA+AGG - chr1_1:3720911-3720930 Msa0001950:intron 40.0%
!!! GTGGAGTGTTTGTTTTGATG+TGG - chr1_1:3712447-3712466 Msa0001950:intron 40.0%
!!! GGAGTGTTTGTTTTGATGTG+GGG - chr1_1:3721038-3721057 Msa0001950:intron 40.0%
!!! TGTTTTGATGTGGGGTGTTT+AGG - chr1_1:3720910-3720929 Msa0001950:intron 40.0%
!! GTTTTGATGTGGGGTGTTTA+GGG - chr1_1:3720911-3720930 Msa0001950:intron 40.0%
TTGCATTTGCGTTCAAAAGG+TGG - chr1_1:3721139-3721158 Msa0001950:intron 40.0%
! TGGTGCTAAATTGGTTAGAC+AGG - chr1_1:3712598-3712617 Msa0001950:intron 40.0%
TGCTAAATTGGTTAGACAGG+CGG - chr1_1:3712601-3712620 Msa0001950:intron 40.0%
TGCCAAATCATTTGTCTTGG+CGG + chr1_1:3712627-3712646 None:intergenic 40.0%
! ATTTTTATTCCACGGGCTTC+TGG - chr1_1:3721541-3721560 Msa0001950:intron 40.0%
! TATGAAGCACTAACGCCTTT+GGG - chr1_1:3721634-3721653 Msa0001950:intron 40.0%
GCTAAGCAATGTAATCCCAA+AGG + chr1_1:3721652-3721671 None:intergenic 40.0%
!! ACACAAACACCTTTGGGATT+AGG - chr1_1:3713095-3713114 Msa0001950:intron 40.0%
TCTTTGCTTCAACATGCCTT+AGG - chr1_1:3721801-3721820 Msa0001950:intron 40.0%
!! ATGTGTTCAAGGAGTACCTA+AGG + chr1_1:3721820-3721839 None:intergenic 40.0%
TACTCCTTGAACACATCTGT+GGG - chr1_1:3721824-3721843 Msa0001950:intron 40.0%
GGTTGTGTACGGATAAATGA+AGG - chr1_1:3721925-3721944 Msa0001950:intron 40.0%
ACGATTCAAAATCGGTGAAC+TGG - chr1_1:3722110-3722129 Msa0001950:intron 40.0%
! ATAGGGGTGTGCATAAAAAC+CGG + chr1_1:3713816-3713835 None:intergenic 40.0%
TATAACACACACACACACAC+AGG - chr1_1:3722541-3722560 Msa0001950:intron 40.0%
CAACATGTCTGCATCATGTT+AGG - chr1_1:3713966-3713985 Msa0001950:intron 40.0%
GGTAGGAAATATGATAGCTG+AGG - chr1_1:3714120-3714139 Msa0001950:intron 40.0%
!! GTTGAGTAAGGTTGGTAGAA+AGG - chr1_1:3714144-3714163 Msa0001950:intron 40.0%
CTCACTGTCTGTAACAAAGT+AGG + chr1_1:3714257-3714276 None:intergenic 40.0%
CGTTGAATTTGAGAACTGCA+AGG - chr1_1:3714285-3714304 Msa0001950:intron 40.0%
CTAGAGGACGCAATTAGAAA+CGG - chr1_1:3714449-3714468 Msa0001950:intron 40.0%
ACTGAAGATTGCAGCACTTA+AGG - chr1_1:3714550-3714569 Msa0001950:CDS 40.0%
TGGCAATATCATCAAGGTAC+TGG + chr1_1:3714601-3714620 None:intergenic 40.0%
GATGATATTGCCATCTTGAC+AGG - chr1_1:3714608-3714627 Msa0001950:intron 40.0%
!!! TCCTTTTTTGGTTTAGCGGT+TGG - chr1_1:3723335-3723354 Msa0001950:intron 40.0%
ACCAACCGCTAAACCAAAAA+AGG + chr1_1:3723339-3723358 None:intergenic 40.0%
!! ACAACCACAATAGTTGGTGA+TGG - chr1_1:3714852-3714871 Msa0001950:CDS 40.0%
ACTTCCATCACCAACTATTG+TGG + chr1_1:3714859-3714878 None:intergenic 40.0%
TCGCTTTGTAACTGCTTCTT+GGG + chr1_1:3723513-3723532 None:intergenic 40.0%
AAGAGAGGGAAACCTCTATT+TGG + chr1_1:3723553-3723572 None:intergenic 40.0%
!! ATTTTTAAGGGGTGGAGAGA+CGG + chr1_1:3723583-3723602 None:intergenic 40.0%
GAAAGGATTGCAAAACTGTC+TGG - chr1_1:3715269-3715288 Msa0001950:intron 40.0%
ACAAACTGAGACAGAACTCA+AGG - chr1_1:3715432-3715451 Msa0001950:intron 40.0%
GAGCTTATCGAACCAGTAAA+AGG + chr1_1:3724143-3724162 None:intergenic 40.0%
TACAATACCCTCTTCAACAG+CGG + chr1_1:3724186-3724205 None:intergenic 40.0%
!! GTTGAAGAGGGTATTGTAGT+TGG - chr1_1:3724188-3724207 Msa0001950:CDS 40.0%
TTTGCTCAGACTTGCATCAA+AGG - chr1_1:3715615-3715634 Msa0001950:CDS 40.0%
TATGGATATAATGCTGCCAC+TGG - chr1_1:3724655-3724674 Msa0001950:intron 40.0%
TGGGATCATTGATCCTACAA+AGG - chr1_1:3724702-3724721 Msa0001950:intron 40.0%
TTGGTTTCGTACCAAATACG+AGG - chr1_1:3724843-3724862 Msa0001950:CDS 40.0%
! GTCTCACTGGACTTTTAATG+TGG - chr1_1:3724966-3724985 Msa0001950:CDS 40.0%
AGGCAGAAACATGCACAATA+AGG + chr1_1:3725092-3725111 None:intergenic 40.0%
TAAGCATTCACACGCATAGA+AGG + chr1_1:3725112-3725131 None:intergenic 40.0%
AGGCAGAAACATGCACAATA+AGG + chr1_1:3725092-3725111 None:intergenic 40.0%
TGTTGAGATAAAGGAACCTG+AGG - chr1_1:3717640-3717659 Msa0001950:CDS 40.0%
CGAATCCTAGGAGAAAAGAA+AGG + chr1_1:3718033-3718052 None:intergenic 40.0%
ACTTCTACATACCGAATCCT+AGG + chr1_1:3725808-3725827 None:intergenic 40.0%
! TAGGATTCGGTATGTAGAAG+TGG - chr1_1:3725807-3725826 Msa0001950:intron 40.0%
TTCCGATGTGATACACAATC+TGG - chr1_1:3725869-3725888 Msa0001950:intron 40.0%
! ACTCTAGTTCGTTACACTAC+AGG + chr1_1:3725939-3725958 None:intergenic 40.0%
CATGTTCCTGGAAAAAAGCT+TGG - chr1_1:3726048-3726067 Msa0001950:intron 40.0%
! GAATTGGTAGTTACTGCGAT+CGG - chr1_1:3726104-3726123 Msa0001950:intron 40.0%
GGCAACATCAAATCTTTCAC+AGG + chr1_1:3726230-3726249 None:intergenic 40.0%
!! TTCACACTGAAGGTGTCTAA+GGG + chr1_1:3726324-3726343 None:intergenic 40.0%
AGGAACGAGCAAAACCAAAA+GGG + chr1_1:3726407-3726426 None:intergenic 40.0%
AAGGAACGAGCAAAACCAAA+AGG + chr1_1:3726408-3726427 None:intergenic 40.0%
TCACGTAAGCACAAAAGCAA+AGG - chr1_1:3726480-3726499 Msa0001950:intron 40.0%
CACGTAAGCACAAAAGCAAA+GGG - chr1_1:3726481-3726500 Msa0001950:intron 40.0%
ACGTAAGCACAAAAGCAAAG+GGG - chr1_1:3726482-3726501 Msa0001950:intron 40.0%
!! AGCCACCGACTTAACTATAT+AGG + chr1_1:3726545-3726564 None:intergenic 40.0%
ATACAACATAAAGGGCCATC+GGG + chr1_1:3726854-3726873 None:intergenic 40.0%
GCCCTTTATGTTGTATTTGG+AGG - chr1_1:3726858-3726877 Msa0001950:intron 40.0%
GCAAACAAGTTCACTGCTTT+AGG - chr1_1:3726902-3726921 Msa0001950:intron 40.0%
AGAGCAACCACGTTAACTTA+TGG - chr1_1:3727052-3727071 Msa0001950:CDS 40.0%
GGTGAAATGATTGCACAGAA+TGG + chr1_1:3727180-3727199 None:intergenic 40.0%
! CAAAATTTAAGGTGAGCGGA+TGG + chr1_1:3727280-3727299 None:intergenic 40.0%
TAGTAAGTCTCCCCTTTAGA+CGG + chr1_1:3727409-3727428 None:intergenic 40.0%
GGCTAGGGTTTAAGAGGATT+TGG + chr1_1:3711606-3711625 None:intergenic 45.0%
AATGGTGGCTAGGGTTTAAG+AGG + chr1_1:3711612-3711631 None:intergenic 45.0%
TTGGGAGAAAATGGTGGCTA+GGG + chr1_1:3711621-3711640 None:intergenic 45.0%
ATTGGGAGAAAATGGTGGCT+AGG + chr1_1:3711622-3711641 None:intergenic 45.0%
CTCCCAATTTCACACAACCA+TGG - chr1_1:3711634-3711653 Msa0001950:intron 45.0%
GGATGAAGAAAGGTTGCATG+AGG + chr1_1:3711675-3711694 None:intergenic 45.0%
! GTTTTTCTGCGGGAAGAAGA+TGG + chr1_1:3711716-3711735 None:intergenic 45.0%
GAAATACAACTCCTTGGCCA+TGG + chr1_1:3711789-3711808 None:intergenic 45.0%
TTCCGCTATCAAGAAACTCC+AGG - chr1_1:3711820-3711839 Msa0001950:intron 45.0%
CACCTGGAGTTTCTTGATAG+CGG + chr1_1:3711825-3711844 None:intergenic 45.0%
GCTATCAAGAAACTCCAGGT+GGG - chr1_1:3711824-3711843 Msa0001950:intron 45.0%
GAATGGTGTGAACAAGCTTG+CGG - chr1_1:3711930-3711949 Msa0001950:intron 45.0%
TGTGAACAAGCTTGCGGATT+TGG - chr1_1:3711936-3711955 Msa0001950:intron 45.0%
! AACAAGCTTGCGGATTTGGT+TGG - chr1_1:3711940-3711959 Msa0001950:intron 45.0%
!! TGGTGTTACTCTTGGTCCTA+AGG - chr1_1:3711960-3711979 Msa0001950:intron 45.0%
!! GGTGTTACTCTTGGTCCTAA+GGG - chr1_1:3711961-3711980 Msa0001950:intron 45.0%
TTACTCTTGGTCCTAAGGGA+AGG - chr1_1:3711965-3711984 Msa0001950:intron 45.0%
CGTTAAAAAGGTGGAGTTGG+AGG - chr1_1:3712559-3712578 Msa0001950:intron 45.0%
AGCCGCCAAGACAAATGATT+TGG - chr1_1:3712622-3712641 Msa0001950:intron 45.0%
! GCCAAGACAAATGATTTGGC+AGG - chr1_1:3712626-3712645 Msa0001950:intron 45.0%
GCCTGCCAAATCATTTGTCT+TGG + chr1_1:3712630-3712649 None:intergenic 45.0%
! ACAAATGATTTGGCAGGCGA+TGG - chr1_1:3712632-3712651 Msa0001950:intron 45.0%
!!! TACCTCTGTTGTTTTGGCTC+AGG - chr1_1:3712661-3712680 Msa0001950:intron 45.0%
!!! ACCTCTGTTGTTTTGGCTCA+GGG - chr1_1:3712662-3712681 Msa0001950:intron 45.0%
TACCACGTGTGATAAGCACA+GGG + chr1_1:3712839-3712858 None:intergenic 45.0%
ATACCACGTGTGATAAGCAC+AGG + chr1_1:3712840-3712859 None:intergenic 45.0%
TACGATGCACGAATGCCTTT+GGG - chr1_1:3713041-3713060 Msa0001950:intron 45.0%
GCACATAAGCCTAATCCCAA+AGG + chr1_1:3713107-3713126 None:intergenic 45.0%
CCTAAGGTGTGTTGAAGCAA+AGG + chr1_1:3713192-3713211 None:intergenic 45.0%
CCTTTGCTTCAACACACCTT+AGG - chr1_1:3713189-3713208 Msa0001950:intron 45.0%
AACACACCTTAGGCACTCTT+TGG - chr1_1:3713199-3713218 Msa0001950:intron 45.0%
!! ATACGTCCAAAGAGTGCCTA+AGG + chr1_1:3713208-3713227 None:intergenic 45.0%
GCACTCTTTGGACGTATCTA+TGG - chr1_1:3713211-3713230 Msa0001950:intron 45.0%
CAGAAGAGGGGTTGTGAAAT+GGG - chr1_1:3713651-3713670 Msa0001950:CDS 45.0%
ACACACACACACAAACACAC+CGG - chr1_1:3713909-3713928 Msa0001950:intron 45.0%
GTTGTGGTTGTGTGAATTGC+AGG - chr1_1:3714042-3714061 Msa0001950:intron 45.0%
GTTGTGTGAATTGCAGGTTG+AGG - chr1_1:3714048-3714067 Msa0001950:intron 45.0%
! GCAGGTTGAGGATAGTGAAT+TGG - chr1_1:3714060-3714079 Msa0001950:intron 45.0%
GGATAGTGAATTGGCTGATG+TGG - chr1_1:3714069-3714088 Msa0001950:intron 45.0%
TAGTGCAGGGAACAATCATG+AGG - chr1_1:3714099-3714118 Msa0001950:intron 45.0%
GATATTGCCATCTTGACAGG+AGG - chr1_1:3714611-3714630 Msa0001950:intron 45.0%
! AGGTACTGTTATCAGAGAGG+AGG - chr1_1:3714758-3714777 Msa0001950:intron 45.0%
ACTGTTATCAGAGAGGAGGT+TGG - chr1_1:3714762-3714781 Msa0001950:intron 45.0%
GGACTTAGCTTAGACAAAGC+TGG - chr1_1:3714783-3714802 Msa0001950:CDS 45.0%
CTTAGACAAAGCTGGGAATG+AGG - chr1_1:3714791-3714810 Msa0001950:CDS 45.0%
AAAGCTGGGAATGAGGTTCT+AGG - chr1_1:3714798-3714817 Msa0001950:CDS 45.0%
! TCGCTTGGTAACTGCTTCTT+GGG + chr1_1:3714883-3714902 None:intergenic 45.0%
ACAATATTTAGGGGGTGGAG+AGG + chr1_1:3714956-3714975 None:intergenic 45.0%
GAATCAAACCTGAGACCTTG+AGG + chr1_1:3715097-3715116 None:intergenic 45.0%
AGGATTGCAAAACTGTCTGG+CGG - chr1_1:3715272-3715291 Msa0001950:intron 45.0%
TACAATACCCTCCTCAACAG+CGG + chr1_1:3715578-3715597 None:intergenic 45.0%
!! GTTGAGGAGGGTATTGTAGT+TGG - chr1_1:3715580-3715599 Msa0001950:CDS 45.0%
AATTAAAACGTGGCGCAGGT+TGG - chr1_1:3715844-3715863 Msa0001950:CDS 45.0%
! TGGCAGTGTTGTTAGTGAGA+AGG - chr1_1:3715933-3715952 Msa0001950:CDS 45.0%
TCCAACGACGATACGAGATA+CGG - chr1_1:3716044-3716063 Msa0001950:intron 45.0%
AGGGCCCGCATCATTATAAA+TGG - chr1_1:3716235-3716254 Msa0001950:CDS 45.0%
! CTGGACTTTTACGGTGTGTT+TGG - chr1_1:3716419-3716438 Msa0001950:intron 45.0%
GCGAAGAAAATGGAGAGAAG+GGG + chr1_1:3717175-3717194 None:intergenic 45.0%
CAGCGAAGAAAATGGAGAGA+AGG + chr1_1:3717177-3717196 None:intergenic 45.0%
CATAGAAGGCAGAAACATGC+AGG + chr1_1:3717467-3717486 None:intergenic 45.0%
TTGTCCATTGGGTTACCAAC+AGG + chr1_1:3717671-3717690 None:intergenic 45.0%
GGTAACCCAATGGACAATTC+AGG - chr1_1:3717674-3717693 Msa0001950:intron 45.0%
! CTCTGCCTTTCTTTTCTCCT+AGG - chr1_1:3718025-3718044 Msa0001950:intron 45.0%
ACTTCTACATGCCGAATCCT+AGG + chr1_1:3718045-3718064 None:intergenic 45.0%
TAGGATTCGGCATGTAGAAG+TGG - chr1_1:3718044-3718063 Msa0001950:intron 45.0%
AAGTGGCGGCTGCTTAAAAT+GGG - chr1_1:3718061-3718080 Msa0001950:intron 45.0%
GTAGGACCAAGTCCAAATGT+AGG - chr1_1:3718142-3718161 Msa0001950:intron 45.0%
GTCTGTCCTACATTTGGACT+TGG + chr1_1:3718151-3718170 None:intergenic 45.0%
CGTGTTCCCGGAAATAATCT+CGG - chr1_1:3718282-3718301 Msa0001950:intron 45.0%
ACCTCTCCGAGATTATTTCC+GGG + chr1_1:3718291-3718310 None:intergenic 45.0%
GGCAACATCAAATCCTTCAC+GGG + chr1_1:3718656-3718675 None:intergenic 45.0%
ATTAGTCGTCCACCTTTGGT+TGG + chr1_1:3718745-3718764 None:intergenic 45.0%
AATACCGGGTTCGATTCCTA+GGG + chr1_1:3718812-3718831 None:intergenic 45.0%
! GATCTCTAGTCTGGTTCAAG+TGG + chr1_1:3719030-3719049 None:intergenic 45.0%
GGCTAGGGTTTAAGAGGATT+TGG + chr1_1:3711606-3711625 None:intergenic 45.0%
AATGGTGGCTAGGGTTTAAG+AGG + chr1_1:3711612-3711631 None:intergenic 45.0%
ATTGGGAGAAATGGTGGCTA+GGG + chr1_1:3720283-3720302 None:intergenic 45.0%
AATTGGGAGAAATGGTGGCT+AGG + chr1_1:3720284-3720303 None:intergenic 45.0%
TGTGGAATTGGGAGAAATGG+TGG + chr1_1:3720289-3720308 None:intergenic 45.0%
TGCCATGGTTGTGTGGAATT+GGG + chr1_1:3720300-3720319 None:intergenic 45.0%
ATGCCATGGTTGTGTGGAAT+TGG + chr1_1:3720301-3720320 None:intergenic 45.0%
GAATGAAGAAATGGAAGCGG+AGG + chr1_1:3711693-3711712 None:intergenic 45.0%
!!! GGTACTGGTAGTTTTTCTGC+GGG + chr1_1:3720390-3720409 None:intergenic 45.0%
!!! CGGTACTGGTAGTTTTTCTG+CGG + chr1_1:3720391-3720410 None:intergenic 45.0%
! TTTAAGGTTCCGACTCTTCC+TGG + chr1_1:3720423-3720442 None:intergenic 45.0%
TTCCGCTATCAAGAAACTCC+AGG - chr1_1:3711820-3711839 Msa0001950:intron 45.0%
CACCTGGAGTTTCTTGATAG+CGG + chr1_1:3711825-3711844 None:intergenic 45.0%
GCTATCAAGAAACTCCAGGT+GGG - chr1_1:3711824-3711843 Msa0001950:intron 45.0%
!! TGGTGTTACTCTTGGTCCTA+AGG - chr1_1:3711960-3711979 Msa0001950:intron 45.0%
!! GGTGTTACTCTTGGTCCTAA+GGG - chr1_1:3711961-3711980 Msa0001950:intron 45.0%
TTACTCTTGGTCCTAAGGGA+AGG - chr1_1:3711965-3711984 Msa0001950:intron 45.0%
TTGCGTTCAAAAGGTGGAGT+TGG - chr1_1:3721145-3721164 Msa0001950:intron 45.0%
GAGGATCCGGTTGAGAATAT+TGG - chr1_1:3721167-3721186 Msa0001950:intron 45.0%
! GCCAAGACAAATGATTTGGC+AGG - chr1_1:3712626-3712645 Msa0001950:intron 45.0%
GCCTGCCAAATCATTTGTCT+TGG + chr1_1:3712630-3712649 None:intergenic 45.0%
! ACAAATGATTTGGCAGGCGA+TGG - chr1_1:3712632-3712651 Msa0001950:intron 45.0%
!!! ACCTCTGTTGTTTTGGCTCA+AGG - chr1_1:3712662-3712681 Msa0001950:intron 45.0%
ACCTTGAGCCAAAACAACAG+AGG + chr1_1:3721255-3721274 None:intergenic 45.0%
!! GCTCAAGGTCTTATTGCAGA+AGG - chr1_1:3721266-3721285 Msa0001950:intron 45.0%
TACCACGTGTGATAAGCACA+GGG + chr1_1:3712839-3712858 None:intergenic 45.0%
ATACCACGTGTGATAAGCAC+AGG + chr1_1:3712840-3712859 None:intergenic 45.0%
! CTATGAAGCACTAACGCCTT+TGG - chr1_1:3721633-3721652 Msa0001950:intron 45.0%
GAGACAAAGCCTAATCCCAA+AGG + chr1_1:3721700-3721719 None:intergenic 45.0%
GTACTCCTTGAACACATCTG+TGG - chr1_1:3721823-3721842 Msa0001950:intron 45.0%
ACTCCTTGAACACATCTGTG+GGG - chr1_1:3721825-3721844 Msa0001950:intron 45.0%
TAACCCCACAGATGTGTTCA+AGG + chr1_1:3721831-3721850 None:intergenic 45.0%
! TTTAGATGTAGGGGTGTGCA+TGG - chr1_1:3721999-3722018 Msa0001950:intron 45.0%
CAGAAGAGGGGTTGTGAAAT+GGG - chr1_1:3713651-3713670 Msa0001950:CDS 45.0%
GTTGTGGTTGTGTGAATTGC+AGG - chr1_1:3714042-3714061 Msa0001950:intron 45.0%
GTTGTGTGAATTGCAGGTTG+AGG - chr1_1:3714048-3714067 Msa0001950:intron 45.0%
! GCAGGTTGAGGATAGTGAAT+TGG - chr1_1:3714060-3714079 Msa0001950:intron 45.0%
GGATAGTGAATTGGCTGATG+TGG - chr1_1:3714069-3714088 Msa0001950:intron 45.0%
TAGTGCAGGGAACAATCATG+AGG - chr1_1:3714099-3714118 Msa0001950:intron 45.0%
!! AAAGGGTGTCGTTACACTTG+AGG - chr1_1:3722794-3722813 Msa0001950:intron 45.0%
GATATTGCCATCTTGACAGG+AGG - chr1_1:3714611-3714630 Msa0001950:intron 45.0%
! AGGTACTGTTATCAGAGAGG+AGG - chr1_1:3714758-3714777 Msa0001950:intron 45.0%
ACTGTTATCAGAGAGGAGGT+TGG - chr1_1:3714762-3714781 Msa0001950:intron 45.0%
GCCTTAGCTTAGACAAAGCT+GGG - chr1_1:3723414-3723433 Msa0001950:CDS 45.0%
! TCCCAGCTTTGTCTAAGCTA+AGG + chr1_1:3714788-3714807 None:intergenic 45.0%
CTTAGACAAAGCTGGGAATG+AGG - chr1_1:3714791-3714810 Msa0001950:CDS 45.0%
AAAGCTGGGAATGAGGTTCT+AGG - chr1_1:3714798-3714817 Msa0001950:CDS 45.0%
CTCGCTTTGTAACTGCTTCT+TGG + chr1_1:3723514-3723533 None:intergenic 45.0%
!! TTTTTAAGGGGTGGAGAGAC+GGG + chr1_1:3723582-3723601 None:intergenic 45.0%
GTATGTATGCAGCATACGAG+TGG - chr1_1:3723732-3723751 Msa0001950:intron 45.0%
AGGATTGCAAAACTGTCTGG+TGG - chr1_1:3715272-3715291 Msa0001950:intron 45.0%
AGACGCTCTTAACGCTACAA+AGG - chr1_1:3724082-3724101 Msa0001950:intron 45.0%
!! GAAGAGGGTATTGTAGTTGG+TGG - chr1_1:3724191-3724210 Msa0001950:CDS 45.0%
!! AGGGTATTGTAGTTGGTGGT+GGG - chr1_1:3724195-3724214 Msa0001950:CDS 45.0%
AATTAAAACGCGACGCAGGT+TGG - chr1_1:3724446-3724465 Msa0001950:CDS 45.0%
! TGGCAGTGTTGTTAGTGAGA+AGG - chr1_1:3715933-3715952 Msa0001950:CDS 45.0%
TCCAACGACGATACGAGATA+TGG - chr1_1:3716044-3716063 Msa0001950:intron 45.0%
TCCATATCTCGTATCGTCGT+TGG + chr1_1:3724641-3724660 None:intergenic 45.0%
AGGGCCCGCATCATTATAAA+TGG - chr1_1:3716235-3716254 Msa0001950:CDS 45.0%
! GAAGCATCCTAATCTTGTCC+AGG - chr1_1:3725300-3725319 Msa0001950:intron 45.0%
CTAACCACCTGGACAAGATT+AGG + chr1_1:3725310-3725329 None:intergenic 45.0%
CATTCGAATCGTCGAGTTTG+CGG - chr1_1:3725464-3725483 Msa0001950:intron 45.0%
! CTCTGCCTTTCTTTTCTCCT+AGG - chr1_1:3718025-3718044 Msa0001950:intron 45.0%
! GATTCGGTATGTAGAAGTGG+CGG - chr1_1:3725810-3725829 Msa0001950:intron 45.0%
AAGTGGCGGCTGCTTAAAAT+GGG - chr1_1:3718061-3718080 Msa0001950:intron 45.0%
GTAGGACCAAGTCCAAATGT+AGG - chr1_1:3718142-3718161 Msa0001950:intron 45.0%
GTCAGTCCTACATTTGGACT+TGG + chr1_1:3725915-3725934 None:intergenic 45.0%
ACAGGAGTCAGTCCTACATT+TGG + chr1_1:3725921-3725940 None:intergenic 45.0%
!!! AGCTCTCCAAGCTTTTTTCC+AGG + chr1_1:3726057-3726076 None:intergenic 45.0%
!! GTTCACACTGAAGGTGTCTA+AGG + chr1_1:3726325-3726344 None:intergenic 45.0%
CGTAAGCACAAAAGCAAAGG+GGG - chr1_1:3726483-3726502 Msa0001950:intron 45.0%
GGGGGATGAGCAAAAACAAA+CGG - chr1_1:3726501-3726520 Msa0001950:intron 45.0%
GGGGATGAGCAAAAACAAAC+GGG - chr1_1:3726502-3726521 Msa0001950:intron 45.0%
GCTGCAATTCAGATCGTGTT+GGG + chr1_1:3726664-3726683 None:intergenic 45.0%
AGCTGCAATTCAGATCGTGT+TGG + chr1_1:3726665-3726684 None:intergenic 45.0%
CGATCTGAATTGCAGCTCAA+AGG - chr1_1:3726668-3726687 Msa0001950:intron 45.0%
ACGTGGTTGCTCTAACTAAG+TGG + chr1_1:3727045-3727064 None:intergenic 45.0%
GGTAGTTAGAGGCAGTAATC+AGG - chr1_1:3727355-3727374 Msa0001950:CDS 45.0%
AGAGGCAGTAATCAGGTTAG+AGG - chr1_1:3727362-3727381 Msa0001950:CDS 45.0%
AGTAAGTCTCCCCTTTAGAC+GGG + chr1_1:3727408-3727427 None:intergenic 45.0%
!! AAAGAAAAAAAAAAAAAAAA+AGG + chr1_1:3713517-3713536 None:intergenic 5.0%
!!! TTAAAATTTTAAAAACAATT+TGG + chr1_1:3713710-3713729 None:intergenic 5.0%
!!! TTGTTTTTAAAATTTTAAAT+TGG - chr1_1:3713712-3713731 Msa0001950:CDS 5.0%
!!! TATAAATATATTTTTGAATA+GGG + chr1_1:3716607-3716626 None:intergenic 5.0%
!! AAAAAATAAAAATAAAAAGA+TGG + chr1_1:3719250-3719269 None:intergenic 5.0%
!!! AAAAAATTGATTTTTTTTAA+TGG - chr1_1:3720537-3720556 Msa0001950:intron 5.0%
!!! TTAAAATTTTAAAAACAATT+TGG + chr1_1:3713710-3713729 None:intergenic 5.0%
!!! TTGTTTTTAAAATTTTAAAT+TGG - chr1_1:3713712-3713731 Msa0001950:CDS 5.0%
!!! TTTTTTTTTTACAAAATTTA+AGG + chr1_1:3727291-3727310 None:intergenic 5.0%
!! AAAAAAAAAAAAAATAAACT+AGG - chr1_1:3727304-3727323 Msa0001950:CDS 5.0%
! GTTGCTGGTGGTTTTTCTGC+GGG + chr1_1:3711726-3711745 None:intergenic 50.0%
! CGTTGCTGGTGGTTTTTCTG+CGG + chr1_1:3711727-3711746 None:intergenic 50.0%
TCGCTCTCACCAGGAAGAAT+CGG - chr1_1:3711747-3711766 Msa0001950:intron 50.0%
! TTTAGGGCTCCGATTCTTCC+TGG + chr1_1:3711759-3711778 None:intergenic 50.0%
TGGCCATGGCTGAGACTTTA+GGG + chr1_1:3711775-3711794 None:intergenic 50.0%
TTGGCCATGGCTGAGACTTT+AGG + chr1_1:3711776-3711795 None:intergenic 50.0%
TAAAGTCTCAGCCATGGCCA+AGG - chr1_1:3711775-3711794 Msa0001950:intron 50.0%
CGCTATCAAGAAACTCCAGG+TGG - chr1_1:3711823-3711842 Msa0001950:intron 50.0%
ATGATTGGGAAGAACCCACC+TGG + chr1_1:3711841-3711860 None:intergenic 50.0%
! TTCGTCCGAGTTTAGGGTCA+AGG - chr1_1:3712192-3712211 Msa0001950:intron 50.0%
! GTGGGGTGTTTGCTTTGATG+CGG - chr1_1:3712370-3712389 Msa0001950:intron 50.0%
ACCCTGAGCCAAAACAACAG+AGG + chr1_1:3712666-3712685 None:intergenic 50.0%
!! GCTCAGGGTCTTATTGCAGA+AGG - chr1_1:3712677-3712696 Msa0001950:intron 50.0%
AACCCTGTGCTTATCACACG+TGG - chr1_1:3712834-3712853 Msa0001950:intron 50.0%
!! CAAAGGCATTCGTGCATCGT+AGG + chr1_1:3713042-3713061 None:intergenic 50.0%
CTACGATGCACGAATGCCTT+TGG - chr1_1:3713040-3713059 Msa0001950:intron 50.0%
GCAGAAGAGGGGTTGTGAAA+TGG - chr1_1:3713650-3713669 Msa0001950:CDS 50.0%
ATGTGGCAGCAGTTAGTGCA+GGG - chr1_1:3714086-3714105 Msa0001950:intron 50.0%
GCAGGGAACAATCATGAGGT+AGG - chr1_1:3714103-3714122 Msa0001950:intron 50.0%
!! GATAGCTGAGGCGTTGAGTA+AGG - chr1_1:3714132-3714151 Msa0001950:intron 50.0%
!! AAAGGGTGTCGTGACACTTG+AGG - chr1_1:3714162-3714181 Msa0001950:intron 50.0%
! GAGGGCATGCAATTTGATCG+AGG - chr1_1:3714220-3714239 Msa0001950:intron 50.0%
ATTGCAGCACTTAAGGCTCC+TGG - chr1_1:3714557-3714576 Msa0001950:CDS 50.0%
GCACTTAAGGCTCCTGGATT+TGG - chr1_1:3714563-3714582 Msa0001950:CDS 50.0%
CTCTTGCGTTCTCCAAATCC+AGG + chr1_1:3714578-3714597 None:intergenic 50.0%
!! GAATGAGGTTCTAGGCACTG+CGG - chr1_1:3714806-3714825 Msa0001950:CDS 50.0%
ATCTTTGGTGAGCACCACCT+TGG + chr1_1:3714832-3714851 None:intergenic 50.0%
! CTCGCTTGGTAACTGCTTCT+TGG + chr1_1:3714884-3714903 None:intergenic 50.0%
GAGAGGGGGAAACCTCAATT+TGG + chr1_1:3714923-3714942 None:intergenic 50.0%
ATATTTAGGGGGTGGAGAGG+CGG + chr1_1:3714953-3714972 None:intergenic 50.0%
TCAAACCTGAGACCTTGAGG+AGG + chr1_1:3715094-3715113 None:intergenic 50.0%
GTCTCAGGTTTGATTCTCCG+CGG - chr1_1:3715101-3715120 Msa0001950:intron 50.0%
! ATTCTCCGCGGTGCCAATTT+GGG - chr1_1:3715113-3715132 Msa0001950:intron 50.0%
GGACGCTCTTAATGCCACAA+AGG - chr1_1:3715474-3715493 Msa0001950:intron 50.0%
TTACTTTCAGGCCGCTGTTG+AGG - chr1_1:3715564-3715583 Msa0001950:CDS 50.0%
!! GAGGAGGGTATTGTAGTTGG+CGG - chr1_1:3715583-3715602 Msa0001950:CDS 50.0%
!! AGGGTATTGTAGTTGGCGGT+GGG - chr1_1:3715587-3715606 Msa0001950:CDS 50.0%
GCTCAGACTTGCATCAAAGG+TGG - chr1_1:3715618-3715637 Msa0001950:CDS 50.0%
TCCGTATCTCGTATCGTCGT+TGG + chr1_1:3716048-3716067 None:intergenic 50.0%
! TTTGTGACCGGAGGGTGTAT+TGG - chr1_1:3717061-3717080 Msa0001950:intron 50.0%
! TTGTGACCGGAGGGTGTATT+GGG - chr1_1:3717062-3717081 Msa0001950:intron 50.0%
CTGCTGGACAGCGAAGAAAA+TGG + chr1_1:3717185-3717204 None:intergenic 50.0%
! GAAGCATCCTACTGTTGTCC+AGG - chr1_1:3717550-3717569 Msa0001950:intron 50.0%
!! TGCACCTGTTGGTAACCCAA+TGG - chr1_1:3717664-3717683 Msa0001950:intron 50.0%
GATTCGGCATGTAGAAGTGG+CGG - chr1_1:3718047-3718066 Msa0001950:intron 50.0%
GAAGTGGCGGCTGCTTAAAA+TGG - chr1_1:3718060-3718079 Msa0001950:intron 50.0%
ACAGCCGTCTGTCCTACATT+TGG + chr1_1:3718157-3718176 None:intergenic 50.0%
TCCCGGAAATAATCTCGGAG+AGG - chr1_1:3718287-3718306 Msa0001950:intron 50.0%
! ACCTTTGGTTGGTCGGAAAC+CGG + chr1_1:3718734-3718753 None:intergenic 50.0%
CCAAAGGTGGACGACTAATC+CGG - chr1_1:3718746-3718765 Msa0001950:intron 50.0%
ATACCGGGTTCGATTCCTAG+GGG + chr1_1:3718811-3718830 None:intergenic 50.0%
GAATACCGGGTTCGATTCCT+AGG + chr1_1:3718813-3718832 None:intergenic 50.0%
TCTTCTTCCAAGGACGTACC+CGG + chr1_1:3718837-3718856 None:intergenic 50.0%
GTGGCAAGGATCTTCTTCCA+AGG + chr1_1:3718847-3718866 None:intergenic 50.0%
TGGAAGAAGATCCTTGCCAC+TGG - chr1_1:3718847-3718866 Msa0001950:intron 50.0%
! TCAAGTTGCTTGGGATCCAG+TGG + chr1_1:3718866-3718885 None:intergenic 50.0%
CTCCCAATTCCACACAACCA+TGG - chr1_1:3720295-3720314 Msa0001950:intron 50.0%
AAATGGAAGCGGAGGAAGAG+AGG + chr1_1:3720346-3720365 None:intergenic 50.0%
TTCTGCGGGTGGAAGAAGAT+GGG + chr1_1:3720376-3720395 None:intergenic 50.0%
TTTCTGCGGGTGGAAGAAGA+TGG + chr1_1:3720377-3720396 None:intergenic 50.0%
! ACTGGTAGTTTTTCTGCGGG+TGG + chr1_1:3720387-3720406 None:intergenic 50.0%
GAACCTTAAAGTCTCCGCCA+TGG - chr1_1:3720433-3720452 Msa0001950:intron 50.0%
GAAATGCAACTCCTTGGCCA+TGG + chr1_1:3720453-3720472 None:intergenic 50.0%
CGCTATCAAGAAACTCCAGG+TGG - chr1_1:3711823-3711842 Msa0001950:intron 50.0%
!! TGGTGTCACTGTTGCCAAAG+AGG - chr1_1:3720698-3720717 Msa0001950:intron 50.0%
CGTTCAAAAGGTGGAGTTGG+AGG - chr1_1:3721148-3721167 Msa0001950:intron 50.0%
AAAGGTGGAGTTGGAGGATC+CGG - chr1_1:3712565-3712584 Msa0001950:intron 50.0%
GGCCGCCAAGACAAATGATT+TGG - chr1_1:3721211-3721230 Msa0001950:intron 50.0%
AACCCTGTGCTTATCACACG+TGG - chr1_1:3712834-3712853 Msa0001950:intron 50.0%
GCAGAAGAGGGGTTGTGAAA+TGG - chr1_1:3713650-3713669 Msa0001950:CDS 50.0%
GAGGGGTTGTGAAATGGGTA+CGG - chr1_1:3713656-3713675 Msa0001950:CDS 50.0%
ATGTGGCAGCAGTTAGTGCA+GGG - chr1_1:3714086-3714105 Msa0001950:intron 50.0%
GCAGGGAACAATCATGAGGT+AGG - chr1_1:3714103-3714122 Msa0001950:intron 50.0%
!! GATAGCTGAGGCGTTGAGTA+AGG - chr1_1:3714132-3714151 Msa0001950:intron 50.0%
!! GGTGTCGTTACACTTGAGGA+GGG - chr1_1:3722798-3722817 Msa0001950:intron 50.0%
TCGTTACACTTGAGGAGGGA+AGG - chr1_1:3722802-3722821 Msa0001950:intron 50.0%
! GAGGGCATGCAATTTGATCG+AGG - chr1_1:3714220-3714239 Msa0001950:intron 50.0%
ATTGCAGCACTTAAGGCTCC+TGG - chr1_1:3714557-3714576 Msa0001950:CDS 50.0%
GCACTTAAGGCTCCTGGATT+TGG - chr1_1:3714563-3714582 Msa0001950:CDS 50.0%
CTCTTGCGTTCTCCAAATCC+AGG + chr1_1:3714578-3714597 None:intergenic 50.0%
GGCCTTAGCTTAGACAAAGC+TGG - chr1_1:3723413-3723432 Msa0001950:CDS 50.0%
!! GAATGAGGTTCTAGGCACTG+CGG - chr1_1:3714806-3714825 Msa0001950:CDS 50.0%
ATCTTTGGTGAGCACCACCT+TGG + chr1_1:3714832-3714851 None:intergenic 50.0%
GAGACGGGGAAAGAAAGAGA+GGG + chr1_1:3723567-3723586 None:intergenic 50.0%
AGAGACGGGGAAAGAAAGAG+AGG + chr1_1:3723568-3723587 None:intergenic 50.0%
!! TTTTAAGGGGTGGAGAGACG+GGG + chr1_1:3723581-3723600 None:intergenic 50.0%
! TGCAAAACTGTCTGGTGGTG+TGG - chr1_1:3723886-3723905 Msa0001950:intron 50.0%
! TGGTGGTGTGGCTGTAATTC+AGG - chr1_1:3723898-3723917 Msa0001950:intron 50.0%
CTTTAGGCCGCTGTTGAAGA+GGG - chr1_1:3724176-3724195 Msa0001950:CDS 50.0%
!! GAGGGTATTGTAGTTGGTGG+TGG - chr1_1:3724194-3724213 Msa0001950:CDS 50.0%
GCTCAGACTTGCATCAAAGG+TGG - chr1_1:3715618-3715637 Msa0001950:CDS 50.0%
GCATCCTAATCTTGTCCAGG+TGG - chr1_1:3725303-3725322 Msa0001950:intron 50.0%
CCAAGCAACATCTAACCACC+TGG + chr1_1:3725321-3725340 None:intergenic 50.0%
CCAGGTGGTTAGATGTTGCT+TGG - chr1_1:3725318-3725337 Msa0001950:intron 50.0%
TTGTCCATAGGGTTGCCAAC+AGG + chr1_1:3725421-3725440 None:intergenic 50.0%
GGCAACCCTATGGACAATTC+AGG - chr1_1:3725424-3725443 Msa0001950:intron 50.0%
GAAGTGGCGGCTGCTTAAAA+TGG - chr1_1:3718060-3718079 Msa0001950:intron 50.0%
! TTGGTAGTTACTGCGATCGG+CGG - chr1_1:3726107-3726126 Msa0001950:intron 50.0%
AAGTCGGTGGCTAGAAACTC+TGG - chr1_1:3726553-3726572 Msa0001950:intron 50.0%
ACCTCATGCCCTTCTTCCTT+AGG - chr1_1:3726755-3726774 Msa0001950:intron 50.0%
! TCCTAAGGAAGAAGGGCATG+AGG + chr1_1:3726759-3726778 None:intergenic 50.0%
GAGCCCTAAAGTCTCAGCCA+TGG - chr1_1:3711769-3711788 Msa0001950:intron 55.0%
!! TGGTGTCACTGTTGCCAGAG+AGG - chr1_1:3712035-3712054 Msa0001950:intron 55.0%
GATGTGGCAGCAGTTAGTGC+AGG - chr1_1:3714085-3714104 Msa0001950:intron 55.0%
!! GCTGAGGCGTTGAGTAAGGT+TGG - chr1_1:3714136-3714155 Msa0001950:intron 55.0%
! GGTGTCGTGACACTTGAGGA+GGG - chr1_1:3714166-3714185 Msa0001950:intron 55.0%
TCGTGACACTTGAGGAGGGA+AGG - chr1_1:3714170-3714189 Msa0001950:intron 55.0%
TATTTAGGGGGTGGAGAGGC+GGG + chr1_1:3714952-3714971 None:intergenic 55.0%
!! TTGGCCTGATGGTGTTGGCT+TGG - chr1_1:3715052-3715071 Msa0001950:intron 55.0%
!! TGGCCTGATGGTGTTGGCTT+GGG - chr1_1:3715053-3715072 Msa0001950:intron 55.0%
!! ATGGTGTTGGCTTGGGACCT+TGG - chr1_1:3715060-3715079 Msa0001950:intron 55.0%
! TTGAGGAGGAGCACACTCCA+AGG + chr1_1:3715080-3715099 None:intergenic 55.0%
TTGGAGTGTGCTCCTCCTCA+AGG - chr1_1:3715079-3715098 Msa0001950:intron 55.0%
! GATTCTCCGCGGTGCCAATT+TGG - chr1_1:3715112-3715131 Msa0001950:intron 55.0%
TGCAAAACTGTCTGGCGGTG+TGG - chr1_1:3715277-3715296 Msa0001950:intron 55.0%
TGGCGGTGTGGCTGTAATTC+AGG - chr1_1:3715289-3715308 Msa0001950:intron 55.0%
TTTCAGGCCGCTGTTGAGGA+GGG - chr1_1:3715568-3715587 Msa0001950:CDS 55.0%
!! GAGGGTATTGTAGTTGGCGG+TGG - chr1_1:3715586-3715605 Msa0001950:CDS 55.0%
! TGTGACCGGAGGGTGTATTG+GGG - chr1_1:3717063-3717082 Msa0001950:intron 55.0%
CGTTTCCCCAATACACCCTC+CGG + chr1_1:3717071-3717090 None:intergenic 55.0%
GCATCCTACTGTTGTCCAGG+TGG - chr1_1:3717553-3717572 Msa0001950:intron 55.0%
CTGACCACCTGGACAACAGT+AGG + chr1_1:3717560-3717579 None:intergenic 55.0%
CCAAGCAACATCTGACCACC+TGG + chr1_1:3717571-3717590 None:intergenic 55.0%
CCAGGTGGTCAGATGTTGCT+TGG - chr1_1:3717568-3717587 Msa0001950:CDS 55.0%
TTACCAACAGGTGCAGCCTC+AGG + chr1_1:3717659-3717678 None:intergenic 55.0%
! ACCGGTTTCCGACCAACCAA+AGG - chr1_1:3718730-3718749 Msa0001950:intron 55.0%
GGTTTCCGACCAACCAAAGG+TGG - chr1_1:3718733-3718752 Msa0001950:intron 55.0%
GTCGTCCACCTTTGGTTGGT+CGG + chr1_1:3718741-3718760 None:intergenic 55.0%
!! CCGGATTAGTCGTCCACCTT+TGG + chr1_1:3718749-3718768 None:intergenic 55.0%
! CTAATCCGGCTCGTACGTAG+AGG - chr1_1:3718760-3718779 Msa0001950:intron 55.0%
! GTACGTAGAGGCATGCGTAC+TGG - chr1_1:3718772-3718791 Msa0001950:intron 55.0%
TACCGGGTTCGATTCCTAGG+GGG + chr1_1:3718810-3718829 None:intergenic 55.0%
GAATCGAACCCGGTATTCCC+CGG - chr1_1:3718815-3718834 Msa0001950:intron 55.0%
AATCGAACCCGGTATTCCCC+GGG - chr1_1:3718816-3718835 Msa0001950:intron 55.0%
TTCTTCCAAGGACGTACCCG+GGG + chr1_1:3718835-3718854 None:intergenic 55.0%
CTTCTTCCAAGGACGTACCC+GGG + chr1_1:3718836-3718855 None:intergenic 55.0%
TTGCTTGGGATCCAGTGGCA+AGG + chr1_1:3718861-3718880 None:intergenic 55.0%
GGAGGAAGAGAGGTTGCATG+AGG + chr1_1:3720336-3720355 None:intergenic 55.0%
ACTCTTCCTGGAGAGAGCGA+CGG + chr1_1:3720411-3720430 None:intergenic 55.0%
TCGCTCTCTCCAGGAAGAGT+CGG - chr1_1:3720411-3720430 Msa0001950:intron 55.0%
! TGGCCATGGCGGAGACTTTA+AGG + chr1_1:3720439-3720458 None:intergenic 55.0%
TAAAGTCTCCGCCATGGCCA+AGG - chr1_1:3720439-3720458 Msa0001950:intron 55.0%
ATGCAACTCCTTGGCCATGG+CGG + chr1_1:3720450-3720469 None:intergenic 55.0%
TTTGTGGTACCAGAAGCCCG+TGG + chr1_1:3721553-3721572 None:intergenic 55.0%
GATGTGGCAGCAGTTAGTGC+AGG - chr1_1:3714085-3714104 Msa0001950:intron 55.0%
!! GCTGAGGCGTTGAGTAAGGT+TGG - chr1_1:3714136-3714155 Msa0001950:intron 55.0%
!! GGGTGTCGTTACACTTGAGG+AGG - chr1_1:3722797-3722816 Msa0001950:intron 55.0%
CCTCTTCAACAGCGGCCTAA+AGG + chr1_1:3724178-3724197 None:intergenic 55.0%
CCTTTAGGCCGCTGTTGAAG+AGG - chr1_1:3724175-3724194 Msa0001950:CDS 55.0%
TGCACCTGTTGGCAACCCTA+TGG - chr1_1:3725414-3725433 Msa0001950:intron 55.0%
CAGGTTAGAGGCTTCCCCAA+AGG - chr1_1:3727374-3727393 Msa0001950:CDS 55.0%
AGGCTTCCCCAAAGGAAACG+TGG - chr1_1:3727382-3727401 Msa0001950:CDS 55.0%
AGACGGGCCACGTTTCCTTT+GGG + chr1_1:3727392-3727411 None:intergenic 55.0%
TAGACGGGCCACGTTTCCTT+TGG + chr1_1:3727393-3727412 None:intergenic 55.0%
AGGAAACGTGGCCCGTCTAA+AGG - chr1_1:3727394-3727413 Msa0001950:exon 55.0%
GGAAACGTGGCCCGTCTAAA+GGG - chr1_1:3727395-3727414 Msa0001950:exon 55.0%
GAAACGTGGCCCGTCTAAAG+GGG - chr1_1:3727396-3727415 Msa0001950:exon 55.0%
! GGGTGTCGTGACACTTGAGG+AGG - chr1_1:3714165-3714184 Msa0001950:intron 60.0%
AGAGGCGGGGAAAGAGAGAG+GGG + chr1_1:3714938-3714957 None:intergenic 60.0%
GAGAGGCGGGGAAAGAGAGA+GGG + chr1_1:3714939-3714958 None:intergenic 60.0%
ATTTAGGGGGTGGAGAGGCG+GGG + chr1_1:3714951-3714970 None:intergenic 60.0%
GGTCCCAAGCCAACACCATC+AGG + chr1_1:3715059-3715078 None:intergenic 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG - chr1_1:3715086-3715105 Msa0001950:intron 60.0%
! TCCGCGGTGCCAATTTGGGT+GGG - chr1_1:3715117-3715136 Msa0001950:intron 60.0%
CTTTCAGGCCGCTGTTGAGG+AGG - chr1_1:3715567-3715586 Msa0001950:CDS 60.0%
GAACCTGAGGCTGCACCTGT+TGG - chr1_1:3717653-3717672 Msa0001950:intron 60.0%
GCATGCCTCTACGTACGAGC+CGG + chr1_1:3718768-3718787 None:intergenic 60.0%
TTCCTAGGGGGGACAACGCT+TGG + chr1_1:3718798-3718817 None:intergenic 60.0%
TCCCCCCTAGGAATCGAACC+CGG - chr1_1:3718805-3718824 Msa0001950:intron 60.0%
ACCGGGTTCGATTCCTAGGG+GGG + chr1_1:3718809-3718828 None:intergenic 60.0%
AGGACGTACCCGGGGAATAC+CGG + chr1_1:3718827-3718846 None:intergenic 60.0%
GTATTCCCCGGGTACGTCCT+TGG - chr1_1:3718827-3718846 Msa0001950:intron 60.0%
GCAACGACGCATGTCGGACA+TGG + chr1_1:3721722-3721741 None:intergenic 60.0%
GTCCGACATGCGTCGTTGCA+CGG - chr1_1:3721723-3721742 Msa0001950:intron 60.0%
TGCCGTGCAACGACGCATGT+CGG + chr1_1:3721728-3721747 None:intergenic 60.0%
GAACCTGAGGCTGCACCTGT+TGG - chr1_1:3717653-3717672 Msa0001950:intron 60.0%
TTGCCAACAGGTGCAGCCTC+AGG + chr1_1:3725409-3725428 None:intergenic 60.0%
GACGGGCCACGTTTCCTTTG+GGG + chr1_1:3727391-3727410 None:intergenic 60.0%
GGTGAGAGCGACGTTGCTGG+TGG + chr1_1:3711738-3711757 None:intergenic 65.0%
CCTGGTGAGAGCGACGTTGC+TGG + chr1_1:3711741-3711760 None:intergenic 65.0%
CCAGCAACGTCGCTCTCACC+AGG - chr1_1:3711738-3711757 Msa0001950:intron 65.0%
!! GGTTCTAGGCACTGCGGCCA+AGG - chr1_1:3714812-3714831 Msa0001950:CDS 65.0%
! TCTAGGCACTGCGGCCAAGG+TGG - chr1_1:3714815-3714834 Msa0001950:CDS 65.0%
GAGGCGGGGAAAGAGAGAGG+GGG + chr1_1:3714937-3714956 None:intergenic 65.0%
GGAGAGGCGGGGAAAGAGAG+AGG + chr1_1:3714940-3714959 None:intergenic 65.0%
! CTCCGCGGTGCCAATTTGGG+TGG - chr1_1:3715116-3715135 Msa0001950:intron 65.0%
GCCCACCCAAATTGGCACCG+CGG + chr1_1:3715121-3715140 None:intergenic 65.0%
GGACGTACCCGGGGAATACC+GGG + chr1_1:3718826-3718845 None:intergenic 65.0%
CCTGGAGAGAGCGACGGTAC+TGG + chr1_1:3720405-3720424 None:intergenic 65.0%
CCAGTACCGTCGCTCTCTCC+AGG - chr1_1:3720402-3720421 Msa0001950:intron 65.0%
!! GGTTCTAGGCACTGCGGCCA+AGG - chr1_1:3714812-3714831 Msa0001950:CDS 65.0%
! TCTAGGCACTGCGGCCAAGG+TGG - chr1_1:3714815-3714834 Msa0001950:CDS 65.0%
! GGCCAAGCGTTGTCCCCCCT+AGG - chr1_1:3718793-3718812 Msa0001950:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3711514 3727549 3711514 ID=Msa0001950;Name=Msa0001950
chr1_1 mRNA 3711514 3727549 3711514 ID=Msa0001950-mRNA-1;Parent=Msa0001950;Name=Msa0001950-mRNA-1;_AED=0.16;_eAED=0.16;_QI=139|0.88|0.89|0.96|0.88|0.92|28|0|1163
chr1_1 exon 3711514 3711521 3711514 ID=Msa0001950-mRNA-1:exon:1125;Parent=Msa0001950-mRNA-1
chr1_1 exon 3713618 3713741 3713618 ID=Msa0001950-mRNA-1:exon:1124;Parent=Msa0001950-mRNA-1
chr1_1 exon 3714340 3714432 3714340 ID=Msa0001950-mRNA-1:exon:1123;Parent=Msa0001950-mRNA-1
chr1_1 exon 3714507 3714599 3714507 ID=Msa0001950-mRNA-1:exon:1122;Parent=Msa0001950-mRNA-1
chr1_1 exon 3714777 3714881 3714777 ID=Msa0001950-mRNA-1:exon:1121;Parent=Msa0001950-mRNA-1
chr1_1 exon 3714960 3715031 3714960 ID=Msa0001950-mRNA-1:exon:1120;Parent=Msa0001950-mRNA-1
chr1_1 exon 3715144 3715221 3715144 ID=Msa0001950-mRNA-1:exon:1119;Parent=Msa0001950-mRNA-1
chr1_1 exon 3715504 3715673 3715504 ID=Msa0001950-mRNA-1:exon:1118;Parent=Msa0001950-mRNA-1
chr1_1 exon 3715801 3716035 3715801 ID=Msa0001950-mRNA-1:exon:1117;Parent=Msa0001950-mRNA-1
chr1_1 exon 3716125 3716367 3716125 ID=Msa0001950-mRNA-1:exon:1116;Parent=Msa0001950-mRNA-1
chr1_1 exon 3717565 3717660 3717565 ID=Msa0001950-mRNA-1:exon:1115;Parent=Msa0001950-mRNA-1
chr1_1 exon 3717768 3717905 3717768 ID=Msa0001950-mRNA-1:exon:1114;Parent=Msa0001950-mRNA-1
chr1_1 exon 3718344 3718469 3718344 ID=Msa0001950-mRNA-1:exon:1113;Parent=Msa0001950-mRNA-1
chr1_1 exon 3718558 3718669 3718558 ID=Msa0001950-mRNA-1:exon:1112;Parent=Msa0001950-mRNA-1
chr1_1 exon 3720884 3720917 3720884 ID=Msa0001950-mRNA-1:exon:1111;Parent=Msa0001950-mRNA-1
chr1_1 exon 3721368 3721491 3721368 ID=Msa0001950-mRNA-1:exon:1110;Parent=Msa0001950-mRNA-1
chr1_1 exon 3722933 3723025 3722933 ID=Msa0001950-mRNA-1:exon:1109;Parent=Msa0001950-mRNA-1
chr1_1 exon 3723109 3723201 3723109 ID=Msa0001950-mRNA-1:exon:1108;Parent=Msa0001950-mRNA-1
chr1_1 exon 3723385 3723489 3723385 ID=Msa0001950-mRNA-1:exon:1107;Parent=Msa0001950-mRNA-1
chr1_1 exon 3723568 3723639 3723568 ID=Msa0001950-mRNA-1:exon:1106;Parent=Msa0001950-mRNA-1
chr1_1 exon 3723753 3723830 3723753 ID=Msa0001950-mRNA-1:exon:1105;Parent=Msa0001950-mRNA-1
chr1_1 exon 3724134 3724303 3724134 ID=Msa0001950-mRNA-1:exon:1104;Parent=Msa0001950-mRNA-1
chr1_1 exon 3724431 3724665 3724431 ID=Msa0001950-mRNA-1:exon:1103;Parent=Msa0001950-mRNA-1
chr1_1 exon 3724757 3724999 3724757 ID=Msa0001950-mRNA-1:exon:1102;Parent=Msa0001950-mRNA-1
chr1_1 exon 3726152 3726247 3726152 ID=Msa0001950-mRNA-1:exon:1101;Parent=Msa0001950-mRNA-1
chr1_1 exon 3726357 3726494 3726357 ID=Msa0001950-mRNA-1:exon:1100;Parent=Msa0001950-mRNA-1
chr1_1 exon 3727007 3727132 3727007 ID=Msa0001950-mRNA-1:exon:1099;Parent=Msa0001950-mRNA-1
chr1_1 exon 3727222 3727549 3727222 ID=Msa0001950-mRNA-1:exon:1098;Parent=Msa0001950-mRNA-1
chr1_1 five_prime_UTR 3727411 3727549 3727411 ID=Msa0001950-mRNA-1:five_prime_utr;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3727222 3727410 3727222 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3727007 3727132 3727007 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3726357 3726494 3726357 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3726152 3726247 3726152 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3724757 3724999 3724757 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3724431 3724665 3724431 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3724134 3724303 3724134 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3723753 3723830 3723753 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3723568 3723639 3723568 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3723385 3723489 3723385 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3723109 3723201 3723109 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3722933 3723025 3722933 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3721368 3721491 3721368 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3720884 3720917 3720884 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3718558 3718669 3718558 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3718344 3718469 3718344 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3717768 3717905 3717768 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3717565 3717660 3717565 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3716125 3716367 3716125 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3715801 3716035 3715801 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3715504 3715673 3715504 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3715144 3715221 3715144 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3714960 3715031 3714960 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3714777 3714881 3714777 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3714507 3714599 3714507 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3714340 3714432 3714340 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3713618 3713741 3713618 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
chr1_1 CDS 3711514 3711521 3711514 ID=Msa0001950-mRNA-1:cds;Parent=Msa0001950-mRNA-1
Gene Sequence

>Msa0001950

ATGGCATCATTGAATCTATCCTCATGCAACCTTTCTTCATCCGCTTCCATTTCTTCATTCCCATCTTCTTCCCGCAGAAAAACCACCAGCAACGTCGCTCTCACCAGGAAGAATCGGAGCCCTAAAGTCTCAGCCATGGCCAAGGAGTTGTATTTCAACAAAGATGGTTCCGCTATCAAGAAACTCCAGAATGGTGTGAACAAGCTTGCGGATTTGGTTGGTGTTACTCTTGGTCCTAAGGGAAGGAATGTTGTTCTTGAGAGCAAGTATGGTTCTCCTAAGATTGTTAATGATGGTGTCACTGTTGCCAGAGAGGTGGAGTTGGAGGATCCAGTTGAGAATATTGGTGCTAAATTGGTTAGACAGGCAGCCGCCAAGACAAATGATTTGGCAGGCGATGGAACTACTACCTCTGTTGTTTTGGCTCAGGGTCTTATTGCAGAAGGTGTTAAGGTTGTTGCAGCTGGTGCAAACCCTGTGCTTATCACACGTGGTATTGAGAAGACAGCGAAAGCTCTTGTTGCTGAACTTAAACTAATGTCAAAAGAGGTTGAGGATAGTGAATTGGCTGATGTGGCAGCAGTTAGTGCAGGGAACAATCATGAGGTAGGAAATATGATAGCTGAGGCGTTGAGTAAGGTTGGTAGAAAGGGTGTCGTGACACTTGAGGAGGGAAGGAGTGCTGAAAACAATCTGTATGTTGTTGAGGGCATGCAATTTGATCGAGGATATATTTCACCCTACTTTGTTACAGACAGTGAGAAAATGACCGTTGAATTTGAGAACTGCAAGTTGCTTTTAGTTGACAAAAAGATATCCAATGCAAGGGATCTTATTAACATACTAGAGGACGCAATTAGAAACGGATTCCCTATTTTGATAATTGCAGAGGATATTGAACAAGAAGCTTTGGCAACTCTTGTTGTGAACAAACTTAGAGGATCACTGAAGATTGCAGCACTTAAGGCTCCTGGATTTGGAGAACGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACAGGAGGTACTGTTATCAGAGAGGAGGTTGGACTTAGCTTAGACAAAGCTGGGAATGAGGTTCTAGGCACTGCGGCCAAGGTGGTGCTCACCAAAGATACAACCACAATAGTTGGTGATGGAAGTACCCAAGAAGCAGTTACCAAGCGAGTTTCACAAATTAAGAACCAAATTGAGGCTGCAGAACAAGATTATGAAAAGGAGAAGCTGAACGAAAGGATTGCAAAACTGTCTGGCGGTGTGGCTGTAATTCAGGTTGGTGCACAAACTGAGACAGAACTCAAGGAAAAGAAATTGAGAGTTGAGGACGCTCTTAATGCCACAAAGGCCGCTGTTGAGGAGGGTATTGTAGTTGGCGGTGGGTGCACTTTGCTCAGACTTGCATCAAAGGTGGATGCAATCAAGGCTACCCTTGCAAATGATGAAGAAAAAGTTGGAGCAGACATTGTTAAAAGAGCTCTTAGTTACCCTCTGAAATTAATAGCAAAAAATGCTGGTGTAAATGGCAGTGTTGTTAGTGAGAAGGTTCTATCCAACGACGATACGAGATACGGATATAATGCTGCAACTGGAAAATATGAAGATTTAATGTCGGCTGGGATCATTGATCCAACAAAGGTGGTCAGATGTTGCTTGGAACATGCAGCCTCTGTTGCGAAAACATTCTTAATGTCAGACTGTGTTGTTGTTGAGATAAAGGAACCTGAGGCTGCACCTGTTGGTAACCCAATGGACAATTCAGGACCAAGTCCAAATGTAGGACAGACGGCTGTAGTAAAAACTACCAGTACCGTCGCTCTCTCCAGGAAGAGTCGGAACCTTAAAGTCTCCGCCATGGCCAAGGAGTTGCATTTCAACAAAGATGGTTCCGCTATCAAGAAACTCCAGAATGGTGTGAACAAGCTTGCAGATTTGGTTGGTGTTACTCTTGGTCCTAAGGGAAGGAATGTTGTTCTTGAGAGCAAGTATGGTTCTCCTAAGATTGTTAATGATGGTGTCACTGTTGCCAAAGAGGTGGAGTTGGAGGATCCGGTTGAGAATATTGGTGCTAAATTGGTTAGACAGGCGGCCGCCAAGACAAATGATTTGGCAGGCGATGGAACTACTACCTCTGTTGTTTTGGCTCAAGGTCTTATTGCAGAAGGTGTTAAGGTTGTTGCAGCAGGTGCAAACCCTGTGCTTATCACACGTGGTATTGAGAAGACAGCGAAAGCTCTTGTCGCTGAACTTAAACTAATGTCAAAAGAGGTTGAGGATAGTGAATTGGCTGATGTGGCAGCAGTTAGTGCAGGGAACAATCATGAGGTAGGAAATATGATAGCTGAGGCGTTGAGTAAGGTTGGTAGAAAGGGTGTCGTTACACTTGAGGAGGGAAGGAGTGCTGAAAACAATCTGTATGTTGTTGAGGGCATGCAATTTGATCGAGGATATATTTCACCCTACTTTGTTACAGACAGTGAGAAAATGACCGTTGAATTTGAGAACTGCAAGTTGCTTTTAGTTGACAAAAAGATATCCAATGCAAGGGATCTTATTAACATACTAGAGGACGCAATTAGAAACGGATTCCCTATTTTGATAATTGCAGAGGATATTGAACAAGAAGCTTTGGCAACTCTTGTTGTGAACAAACTTAGAGGATCACTGAAGATTGCAGCACTTAAGGCTCCTGGATTTGGAGAACGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACAGGAGGTACTGTTATCAGAGAGGAGGTTGGCCTTAGCTTAGACAAAGCTGGGAATGAGGTTCTAGGCACTGCGGCCAAGGTGGTGCTCACCAAAGATACAACCACAATAGTTGGTGATGGAAGTACCCAAGAAGCAGTTACAAAGCGAGTTTCACAAATTAAGAACCAAATAGAGGCTGCAGAACAAGATTATGAAAAGGAGAAGTTGAACGAAAGGATTGCAAAACTGTCTGGTGGTGTGGCTGTAATTCAGGTTGGTGCACAAACTGAGACAGAACTCAAGGAAAAGAAATTGAGAGTTGAAGACGCTCTTAACGCTACAAAGGCCGCTGTTGAAGAGGGTATTGTAGTTGGTGGTGGGTGCACTTTGCTCAGACTTGCATCAAAGGTGGATGCAATCAAAGCTACCCTTGCAAATGATGAAGAAAAAGTTGGAGCAGACATTGTTAAAAGAGCCCTTAGCTACCCTCTGAAATTAATAGCAAAAAATGCTGGTGTAAATGGCAGTGTTGTTAGTGAGAAGGTTCTATCCAACGACGATACGAGATATGGATATAATGCTGCCACTGGCAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCTACAAAGGTGGTTAGATGTTGCTTGGAACATGCAGCGTCTGTTGCGAAAACATTCTTAATGTCAGACTGTGTTGTTGTTGAGATAAAGGAACCTGAGGCTGCACCTGTTGGCAACCCTATGGACAATTCAGGGAATCAC
Protein sequence

>Msa0001950

MASLNLSSCNLSSSASISSFPSSSRRKTTSNVALTRKNRSPKVSAMAKELYFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTAKALVAELKLMSKEVEDSELADVAAVSAGNNHEVGNMIAEALSKVGRKGVVTLEEGRSAENNLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLLVDKKISNARDLINILEDAIRNGFPILIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKAGNEVLGTAAKVVLTKDTTTIVGDGSTQEAVTKRVSQIKNQIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDDTRYGYNAATGKYEDLMSAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEAAPVGNPMDNSGPSPNVGQTAVVKTTSTVALSRKSRNLKVSAMAKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTAKALVAELKLMSKEVEDSELADVAAVSAGNNHEVGNMIAEALSKVGRKGVVTLEEGRSAENNLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLLVDKKISNARDLINILEDAIRNGFPILIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVIREEVGLSLDKAGNEVLGTAAKVVLTKDTTTIVGDGSTQEAVTKRVSQIKNQIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDDTRYGYNAATGKYEDLMSAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEAAPVGNPMDNSGNH