AlfalfaGEDB | Msa0194970

M. sativa cultivar zhongmu-4 / Msa0194970

KEGG: K03979
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009668 GO:0009706 GO:0009790 GO:0009791 GO:0009793 GO:0009941 GO:0009987 GO:0010027 GO:0010154 GO:0010467 GO:0016020 GO:0016043 GO:0016070 GO:0016072 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019866 GO:0022414 GO:0022613 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042170 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061024 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:1901360
PFAM: PF01018.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0194970	XP_003593960.1	87.029	478	9	6	1	426	1	477	0.0	804

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0194970	sp\|Q8L7L0\|OBGC_ARATH	51.391	539	139	11	9	426	1	537	8.29e-140	420
Msa0194970	sp\|Q8L7L0\|OBGC_ARATH	55.000	80	34	1	410	487	602	681	8.58e-18	90.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0194970	G7IPZ3	87.029	478	9	6	1	426	1	477	0.0	804

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0194970	-0.844365	7.908846e-59	-8.615850e-47
Msa0000780	Msa0194970	0.820093	8.229246e-53	-8.615850e-47
Msa0001950	Msa0194970	0.889373	2.567065e-73	-8.615850e-47
Msa0003470	Msa0194970	0.870819	1.093909e-66	-8.615850e-47
Msa0005350	Msa0194970	0.815520	8.863173e-52	-8.615850e-47
Msa0007450	Msa0194970	0.821578	3.748417e-53	-8.615850e-47
Msa0008830	Msa0194970	0.801032	1.090097e-48	-8.615850e-47
Msa0008850	Msa0194970	0.831170	1.942662e-55	-8.615850e-47
Msa0011180	Msa0194970	0.800050	1.728641e-48	-8.615850e-47
Msa0013050	Msa0194970	-0.808788	2.607356e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0194970	MtrunA17_Chr2g0286181	87.029	478	9	6	1	426	1	477	0.0	804
Msa0194970	MtrunA17_Chr1g0155741	35.526	304	155	7	147	410	117	419	7.43e-42	155
Msa0194970	MtrunA17_Chr1g0186011	35.294	272	119	7	207	426	221	487	7.16e-33	130
Msa0194970	MtrunA17_Chr8g0358201	35.000	140	60	5	271	381	53	190	1.93e-13	72.0
Msa0194970	MtrunA17_Chr3g0129261	37.113	97	60	1	262	358	59	154	2.24e-13	71.6
Msa0194970	MtrunA17_Chr2g0292511	31.690	142	76	4	270	391	27	167	5.47e-12	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0194970	AT5G18570.1	51.391	539	139	11	9	426	1	537	8.43e-141	420
Msa0194970	AT5G18570.1	55.000	80	34	1	410	487	602	681	8.72e-19	90.1
Msa0194970	AT1G07615.1	46.108	167	76	5	269	426	305	466	7.01e-33	131
Msa0194970	AT4G39520.1	33.077	130	84	2	262	391	60	186	1.64e-13	72.4
Msa0194970	AT1G56050.1	35.385	130	53	5	271	371	57	184	8.58e-13	70.5
Msa0194970	AT1G17470.1	31.538	130	83	2	254	378	49	177	2.39e-12	68.9
Msa0194970	AT1G17470.2	31.538	130	83	2	254	378	49	177	2.39e-12	68.9
Msa0194970	AT1G72660.2	31.538	130	83	2	254	378	49	177	4.05e-12	68.2
Msa0194970	AT1G72660.3	31.538	130	83	2	254	378	49	177	4.05e-12	68.2
Msa0194970	AT1G72660.1	31.538	130	83	2	254	378	49	177	4.05e-12	68.2

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Find 187 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGATGGCATATTTG+AGG	0.536068	2_1:-11565141	Msa0194970:three_prime_UTR
AAAGCCGGAGACGGAGGGAA+CGG	0.496700	2_1:-11569440	Msa0194970:CDS
AAAGGAAACAACGCCCAGAT+TGG	0.457445	2_1:+11567942	None:intergenic
AACAACAACGCCTTCTGTCC+CGG	0.491853	2_1:+11569143	None:intergenic
AACTGAAGAAGAAGAAGTGA+AGG	0.481173	2_1:-11569516	Msa0194970:CDS
AAGATTCCAAAATGTCCTTG+AGG	0.629860	2_1:-11566016	Msa0194970:CDS
AAGGAAAAGTTGCAATCTCA+TGG	0.466487	2_1:-11566956	Msa0194970:CDS
AAGGAAACAACGCCCAGATT+GGG	0.467360	2_1:+11567943	None:intergenic
AAGGATTGCCGGCGGTGATG+CGG	0.581747	2_1:-11569490	Msa0194970:CDS
AAGGCGTTGTTGTTGCCAGG+TGG	0.650877	2_1:-11569134	Msa0194970:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGGAACAAGATATAGAAA+TGG	+	chr2_1:11564726-11564745	None:intergenic	30.0%
GAAGAAGAAGAAGAAATCAA+TGG	-	chr2_1:11565007-11565026	Msa0194970:three_prime_UTR	30.0%
TCTGAAGATGATGAAGAATT+GGG	-	chr2_1:11565052-11565071	Msa0194970:three_prime_UTR	30.0%
AAATGAATCCCATTCCTAAA+CGG	+	chr2_1:11565340-11565359	None:intergenic	30.0%
ACACATAGTATATCTTATGG+TGG	+	chr2_1:11565640-11565659	None:intergenic	30.0%
ACTAATTAAACTGCCTAGTT+TGG	+	chr2_1:11565688-11565707	None:intergenic	30.0%
AACTGACATTGTCTATTGTA+CGG	-	chr2_1:11565717-11565736	Msa0194970:intron	30.0%
TGGAAGTTAAAAGTAAGACA+TGG	-	chr2_1:11565966-11565985	Msa0194970:CDS	30.0%
GTCATTTAAACATCGAAACA+CGG	+	chr2_1:11566023-11566042	None:intergenic	30.0%
TTAGAGGAACAAAACTGAAA+AGG	+	chr2_1:11566203-11566222	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	11564692	11569969	11564692	ID=Msa0194970;Name=Msa0194970
chr2_1	mRNA	11564692	11569969	11564692	ID=Msa0194970-mRNA-1;Parent=Msa0194970;Name=Msa0194970-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.37\|0.22\|1\|0.12\|0\|9\|552\|487
chr2_1	exon	11564692	11565190	11564692	ID=Msa0194970-mRNA-1:exon:5101;Parent=Msa0194970-mRNA-1
chr2_1	exon	11565459	11565604	11565459	ID=Msa0194970-mRNA-1:exon:5100;Parent=Msa0194970-mRNA-1
chr2_1	exon	11565948	11566040	11565948	ID=Msa0194970-mRNA-1:exon:5099;Parent=Msa0194970-mRNA-1
chr2_1	exon	11566907	11567137	11566907	ID=Msa0194970-mRNA-1:exon:5098;Parent=Msa0194970-mRNA-1
chr2_1	exon	11567828	11568069	11567828	ID=Msa0194970-mRNA-1:exon:5097;Parent=Msa0194970-mRNA-1
chr2_1	exon	11569057	11569293	11569057	ID=Msa0194970-mRNA-1:exon:5096;Parent=Msa0194970-mRNA-1
chr2_1	exon	11569372	11569620	11569372	ID=Msa0194970-mRNA-1:exon:5095;Parent=Msa0194970-mRNA-1
chr2_1	exon	11569633	11569767	11569633	ID=Msa0194970-mRNA-1:exon:5094;Parent=Msa0194970-mRNA-1
chr2_1	exon	11569786	11569969	11569786	ID=Msa0194970-mRNA-1:exon:5093;Parent=Msa0194970-mRNA-1
chr2_1	CDS	11569786	11569969	11569786	ID=Msa0194970-mRNA-1:cds;Parent=Msa0194970-mRNA-1
chr2_1	CDS	11569633	11569767	11569633	ID=Msa0194970-mRNA-1:cds;Parent=Msa0194970-mRNA-1
chr2_1	CDS	11569372	11569620	11569372	ID=Msa0194970-mRNA-1:cds;Parent=Msa0194970-mRNA-1
chr2_1	CDS	11569057	11569293	11569057	ID=Msa0194970-mRNA-1:cds;Parent=Msa0194970-mRNA-1
chr2_1	CDS	11567828	11568069	11567828	ID=Msa0194970-mRNA-1:cds;Parent=Msa0194970-mRNA-1
chr2_1	CDS	11566907	11567137	11566907	ID=Msa0194970-mRNA-1:cds;Parent=Msa0194970-mRNA-1
chr2_1	CDS	11565948	11566040	11565948	ID=Msa0194970-mRNA-1:cds;Parent=Msa0194970-mRNA-1
chr2_1	CDS	11565512	11565604	11565512	ID=Msa0194970-mRNA-1:cds;Parent=Msa0194970-mRNA-1
chr2_1	three_prime_UTR	11565459	11565511	11565459	ID=Msa0194970-mRNA-1:three_prime_utr;Parent=Msa0194970-mRNA-1
chr2_1	three_prime_UTR	11564692	11565190	11564692	ID=Msa0194970-mRNA-1:three_prime_utr;Parent=Msa0194970-mRNA-1

Gene Sequence

>Msa0194970

ATGGTAACTTCAATCTCACCATGGTTCTCTCCCATTTCTATATCTTGTTCCAACACACGCAACCCTCGCTACCGTGTACCCACCCGCACCAAATCCAAACCTCCTCCAAATCCTAAACTCAACACCCACAAGTCCTCACCGGAACCGCCACTCCTCTCCGCCGGCGACGCCACCACCTACACTCACTTCTCTTCCACTTTCTCACCTTCCTCCTCTGAAATCAAACTCTCCGAATCAACACCAATTCACCAATTGCTCCACAAACTCGATAACGATGATGATGAAGAAGTAGAAGAAGAAGAAGAAGAAGAAATCAATGGAATTGGTGAGTCTGAAGATGATGAAGAATTGGGGTTTATGGATGAGGAGATTGAAGAAGGTGAAGAATTCTGGAGTGAGGAAACTGAAGAAGAAGAAGTGAAGGAGAAAGGATTGCCGGCGGTGATGCGGTGTTTTGACCGGGCGAAAATCTTCGCGAAAGCCGGAGACGGAGGGAACGGAAGTATGGCATTCAGGCGGGAGAAATACGTACCGTTTGGAGGTCCATCCGGTGGGGATGGAGGGAGAGGGAGGGGTTCACATGGACAAGGCAGGATGCAGATTGGTGCTAAGGGGGAGGATGTGGTTGTGAAGGTGCCACCAGGGACGGTGATTAGGGAGGCTGGTAGGGAGGAGGTGATTTTGGAGATGGTGTATCCGGGACAGAAGGCGTTGTTGTTGCCAGGTGGAAGAGGTGGGAGAGGGAATGCTGCTTTTAAGAGTGGGAGTAATAAAGCTCCGAAGATTGCTGAGAATGGTGAACAAGATGTTGGTATAGTTGGTGCTCCAAATGCAGGGAAGAGTACACTTTTGAGTGTTATTAGTGCTGCAAAGCCAGAGGTGGCAAATTATCCCTTTACAACTTTGCTTCCCAATCTGGGCGTTGTTTCCTTTGACTACGATTCAACTATGGTAGTGGCAGACCTTCCAGGTCTTCTTGAAGGAGCACACCGAGGTTTTGGTTTAGGTCATGAATTTCTGCGACACACTGAAAGGTGTTCTGCACTGATACATGTCGTTGATGGTTCATCACCACAGGCAGATCTTGAGTTTGATGCAGTTCGTCTAGAACTGAAGCTATTTAATCCTGAACTTGCTGAGAAGCCATTTATAGTTGCTTATAACAAAATGGATCTTCCAGAAGCATACGAAAACTGGGAATCCTTCAAGGAAAAGTTGCAATCTCATGGGATCACGCCTTTTTGTATGAGCGCTGTCAAAAGGGAAGGTACTCATGAAAAAAGATTCCAAAATGTCCTTGAGGCTTGTGGTGTATTTAAGTCTCTCGTGAAACGTGGCGTAAAGGAAGGCGACAAAGTGATTGTTGGAGAGATGGAGATGATATGGCATGACTCCTCAAACAAATCTGGTGCATCAAAGATGAAGATGTCCACAGAGTCAATTAAATGGCCTGAATGGAAGTAA

Protein sequence

>Msa0194970

MVTSISPWFSPISISCSNTRNPRYRVPTRTKSKPPPNPKLNTHKSSPEPPLLSAGDATTYTHFSSTFSPSSSEIKLSESTPIHQLLHKLDNDDDEEVEEEEEEEINGIGESEDDEELGFMDEEIEEGEEFWSEETEEEEVKEKGLPAVMRCFDRAKIFAKAGDGGNGSMAFRREKYVPFGGPSGGDGGRGRGSHGQGRMQIGAKGEDVVVKVPPGTVIREAGREEVILEMVYPGQKALLLPGGRGGRGNAAFKSGSNKAPKIAENGEQDVGIVGAPNAGKSTLLSVISAAKPEVANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHRGFGLGHEFLRHTERCSALIHVVDGSSPQADLEFDAVRLELKLFNPELAEKPFIVAYNKMDLPEAYENWESFKEKLQSHGITPFCMSAVKREGTHEKRFQNVLEACGVFKSLVKRGVKEGDKVIVGEMEMIWHDSSNKSGASKMKMSTESIKWPEWK*