AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0725920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725920 MtrunA17_Chr5g0417701 97.581 248 6 0 1 248 1 248 0.0 496
Msa0725920 MtrunA17_Chr4g0042521 87.045 247 32 0 1 247 1 247 1.69e-164 454
Msa0725920 MtrunA17_Chr3g0128791 80.165 242 48 0 6 247 12 253 8.39e-147 410
Msa0725920 MtrunA17_Chr3g0128801 80.165 242 48 0 6 247 12 253 1.17e-146 409
Msa0725920 MtrunA17_Chr3g0092071 80.769 234 45 0 14 247 14 247 9.09e-146 407
Msa0725920 MtrunA17_Chr5g0432611 73.984 246 63 1 3 247 6 251 3.29e-139 390
Msa0725920 MtrunA17_Chr7g0217661 76.305 249 48 3 1 247 1 240 1.85e-136 383
Msa0725920 MtrunA17_Chr3g0107291 75.709 247 60 0 1 247 14 260 2.01e-133 376
Msa0725920 MtrunA17_Chr3g0107311 75.304 247 61 0 1 247 8 254 6.54e-133 375
Msa0725920 MtrunA17_Chr5g0435311 74.236 229 57 1 22 248 79 307 6.38e-126 359
Msa0725920 MtrunA17_Chr2g0328261 66.795 259 75 2 1 248 1 259 6.66e-126 357
Msa0725920 MtrunA17_Chr7g0238681 74.672 229 56 1 22 248 29 257 1.12e-125 357
Msa0725920 MtrunA17_Chr6g0453341 75.200 250 51 3 1 247 11 252 1.04e-122 349
Msa0725920 MtrunA17_Chr4g0031621 72.489 229 61 1 22 248 29 257 1.08e-117 337
Msa0725920 MtrunA17_Chr1g0193631 65.315 222 73 3 25 242 30 251 2.39e-105 305
Msa0725920 MtrunA17_Chr7g0271001 59.761 251 95 5 3 247 4 254 9.15e-105 303
Msa0725920 MtrunA17_Chr1g0157061 64.186 215 74 2 32 243 22 236 5.15e-103 298
Msa0725920 MtrunA17_Chr4g0069711 58.667 225 88 3 23 244 59 281 5.67e-97 285
Msa0725920 MtrunA17_Chr7g0218741 54.839 248 107 3 2 246 6 251 3.70e-95 279
Msa0725920 MtrunA17_Chr7g0218751 57.500 240 96 3 7 244 12 247 1.08e-94 278
Msa0725920 MtrunA17_Chr8g0360041 55.870 247 104 3 2 245 7 251 1.25e-92 273
Msa0725920 MtrunA17_Chr5g0433841 56.696 224 96 1 25 247 41 264 2.61e-90 267
Msa0725920 MtrunA17_Chr5g0398271 57.658 222 90 3 25 243 37 257 5.36e-89 264
Msa0725920 MtrunA17_Chr4g0021561 48.996 249 125 1 1 247 8 256 6.10e-87 258
Msa0725920 MtrunA17_Chr7g0218761 60.199 201 76 2 44 242 8 206 1.35e-85 253
Msa0725920 MtrunA17_Chr4g0057091 55.605 223 93 4 25 243 36 256 3.19e-84 252
Msa0725920 MtrunA17_Chr8g0360721 58.706 201 79 2 44 242 17 215 1.62e-82 246
Msa0725920 MtrunA17_Chr3g0109801 52.790 233 101 5 25 248 53 285 4.81e-81 244
Msa0725920 MtrunA17_Chr4g0022841 55.556 117 52 0 129 245 1 117 1.00e-41 139
Msa0725920 MtrunA17_Chr2g0324191 42.759 145 80 2 6 147 8 152 1.04e-38 132
Msa0725920 MtrunA17_Chr2g0324181 56.436 101 44 0 147 247 17 117 1.79e-36 125
Msa0725920 MtrunA17_Chr4g0022851 54.918 122 46 3 3 119 7 124 2.45e-36 125
Msa0725920 MtrunA17_Chr2g0324221 31.197 234 131 9 25 243 35 253 1.38e-25 101
Msa0725920 MtrunA17_Chr2g0324201 29.845 258 151 10 1 243 9 251 4.04e-25 99.8
Msa0725920 MtrunA17_Chr7g0231221 32.314 229 127 10 30 242 53 269 1.03e-24 99.0
Msa0725920 MtrunA17_Chr8g0359971 55.844 77 33 1 168 243 1 77 9.09e-24 91.3
Msa0725920 MtrunA17_Chr4g0021641 31.169 231 135 9 25 243 41 259 1.07e-23 96.3
Msa0725920 MtrunA17_Chr8g0359981 55.294 85 29 4 67 147 2 81 2.36e-23 91.3
Msa0725920 MtrunA17_Chr7g0231211 30.769 234 130 11 25 242 47 264 6.37e-22 91.7
Msa0725920 MtrunA17_Chr4g0012801 31.197 234 128 11 25 242 42 258 1.86e-21 90.1
Msa0725920 MtrunA17_Chr4g0055601 28.761 226 147 7 25 243 28 246 7.30e-19 82.8
Msa0725920 MtrunA17_Chr5g0399811 27.801 241 156 9 9 242 16 245 5.98e-18 80.5
Msa0725920 MtrunA17_Chr4g0055561 28.761 226 144 9 25 242 28 244 4.66e-17 78.2
Msa0725920 MtrunA17_Chr1g0193571 56.897 58 24 1 192 248 4 61 7.66e-16 70.1
Msa0725920 MtrunA17_Chr4g0038741 28.829 222 127 9 36 242 32 237 2.02e-15 73.6
Msa0725920 MtrunA17_Chr4g0055061 27.660 235 136 10 25 242 29 246 2.29e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725920 AT2G03090.1 83.065 248 42 0 1 248 6 253 3.44e-155 431
Msa0725920 AT1G69530.2 82.800 250 41 2 1 248 1 250 1.26e-152 425
Msa0725920 AT1G69530.1 82.800 250 41 2 1 248 1 250 1.26e-152 425
Msa0725920 AT1G69530.3 81.600 250 44 2 1 248 1 250 3.21e-150 420
Msa0725920 AT1G26770.1 84.337 249 38 1 1 248 1 249 6.61e-146 408
Msa0725920 AT1G26770.2 84.337 249 38 1 1 248 11 259 7.84e-146 408
Msa0725920 AT5G56320.1 76.829 246 56 1 3 248 8 252 2.23e-139 392
Msa0725920 AT5G56320.2 76.829 246 56 1 3 248 8 252 2.23e-139 392
Msa0725920 AT5G56320.3 76.829 246 56 1 3 248 8 252 1.96e-138 391
Msa0725920 AT2G40610.1 70.850 247 68 2 2 247 10 253 5.44e-133 375
Msa0725920 AT2G39700.1 75.983 229 53 1 22 248 28 256 2.70e-129 366
Msa0725920 AT1G69530.4 73.600 250 34 3 1 248 1 220 5.14e-128 362
Msa0725920 AT1G69530.5 77.729 229 47 3 1 227 1 227 3.71e-127 360
Msa0725920 AT5G02260.1 74.236 229 57 1 22 248 29 257 8.78e-127 360
Msa0725920 AT3G55500.1 67.717 254 76 2 1 248 6 259 6.19e-126 358
Msa0725920 AT5G05290.1 72.124 226 62 1 23 247 30 255 2.84e-125 356
Msa0725920 AT2G37640.1 73.362 229 59 1 22 248 33 261 3.27e-124 353
Msa0725920 AT3G29030.1 74.222 225 49 2 25 248 38 254 2.15e-121 346
Msa0725920 AT2G28950.1 67.578 256 75 2 1 248 1 256 5.85e-121 345
Msa0725920 AT1G20190.1 67.713 223 69 2 24 243 25 247 5.80e-111 320
Msa0725920 AT2G37640.2 71.292 209 58 1 42 248 28 236 3.12e-110 317
Msa0725920 AT4G01630.1 62.810 242 85 4 6 242 8 249 8.27e-107 309
Msa0725920 AT5G39280.1 55.702 228 99 1 17 244 46 271 2.13e-94 278
Msa0725920 AT5G39300.1 55.459 229 100 1 16 244 46 272 4.29e-94 278
Msa0725920 AT5G39270.1 57.273 220 92 1 25 244 58 275 2.28e-92 273
Msa0725920 AT5G39290.1 56.364 220 94 1 25 244 58 275 1.15e-91 271
Msa0725920 AT1G20190.2 64.706 187 63 2 60 243 2 188 9.94e-89 261
Msa0725920 AT1G12560.1 53.785 251 110 5 3 248 13 262 4.01e-88 262
Msa0725920 AT1G62980.1 53.061 245 108 4 1 242 10 250 3.12e-87 259
Msa0725920 AT5G39310.1 55.405 222 96 2 24 244 89 308 3.25e-87 261
Msa0725920 AT3G03220.1 53.778 225 103 1 25 248 40 264 8.50e-86 256
Msa0725920 AT3G15370.1 52.400 250 104 7 8 247 7 251 3.40e-84 251
Msa0725920 AT5G39260.1 52.212 226 100 2 20 244 40 258 1.02e-78 238
Msa0725920 AT4G38210.1 47.967 246 121 3 6 247 12 254 2.44e-78 237
Msa0725920 AT3G15370.2 46.786 280 104 8 8 247 7 281 1.57e-77 236
Msa0725920 AT4G28250.1 34.764 233 125 10 25 243 36 255 2.29e-28 108
Msa0725920 AT2G20750.1 32.189 233 134 9 25 243 40 262 1.93e-25 101
Msa0725920 AT4G28250.2 33.621 232 123 10 25 243 36 249 1.44e-24 98.6
Msa0725920 AT1G65680.1 30.864 243 141 10 15 242 37 267 3.06e-23 95.5
Msa0725920 AT1G65681.1 30.876 217 125 9 39 242 12 216 2.40e-19 84.0
Msa0725920 AT2G20750.2 31.792 173 98 6 25 186 40 203 9.86e-18 79.7
Msa0725920 AT4G17030.1 29.084 251 149 9 6 242 8 243 1.05e-17 80.1
Msa0725920 AT2G45110.1 28.814 236 129 9 28 242 36 253 2.13e-17 79.3
Msa0725920 AT4G28250.4 33.143 175 90 7 25 189 36 193 1.09e-16 76.6
Msa0725920 AT4G28250.3 33.721 172 87 7 25 186 36 190 2.65e-16 75.5
Msa0725920 AT3G60570.1 25.984 254 156 9 8 242 11 251 1.77e-15 74.3
Msa0725920 AT3G45970.2 26.415 212 134 9 43 242 14 215 1.73e-14 71.2
Msa0725920 AT3G45960.2 29.126 206 125 9 48 242 46 241 1.86e-13 68.6
Msa0725920 AT4G38400.1 26.699 206 130 8 48 242 47 242 5.10e-12 64.7
Msa0725920 AT3G45970.1 25.604 207 132 9 48 242 46 242 7.24e-12 63.9

Find 111 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGGACCTTCTTGATTAT+TGG 0.171021 5_1:-26022543 Msa0725920:three_prime_UTR
GCCCCAGCTGGTTGGTCTTT+TGG 0.178373 5_1:-26022868 Msa0725920:CDS
CAAAGCAACAATTATCTTAA+TGG 0.193864 5_1:-26022952 Msa0725920:CDS
ATTAGATAGTATGCTAGTTT+TGG 0.200784 5_1:-26022691 Msa0725920:three_prime_UTR
CAAGATGGTTCATATTTAAT+TGG 0.217198 5_1:-26022560 Msa0725920:three_prime_UTR
GGATGCCAATGTCTAGAAAT+TGG 0.241916 5_1:-26022987 Msa0725920:CDS
AATGCACATGCAACTTTCTA+TGG 0.254508 5_1:-26024225 Msa0725920:CDS
TCTCATTGGGTTGTTCTTCA+TGG 0.255156 5_1:-26024298 Msa0725920:CDS
GTGTCTTCCTGGCTCTATTT+TGG 0.260571 5_1:-26023935 Msa0725920:CDS
CTTTCCATTACTTGCTTCAT+AGG 0.261264 5_1:+26022313 None:intergenic
CTAGAAATTGGGGTCAAAAT+TGG 0.289763 5_1:-26022975 Msa0725920:CDS
TTAGGTGGTGCATGTGGATA+TGG 0.293336 5_1:-26024075 Msa0725920:intron
GTACATTCAGTAGCTATTAA+AGG 0.297161 5_1:-26023024 Msa0725920:CDS
GTAATTGAAATTGAAATTCT+AGG 0.301935 5_1:-26022639 Msa0725920:three_prime_UTR
ATTGAAACAGTTATGTTTGT+TGG 0.322478 5_1:-26022231 Msa0725920:three_prime_UTR
GCAGAAGAAGGGGAGGAATT+AGG 0.323849 5_1:-26023113 Msa0725920:CDS
GTGGTTCTTGCTTTGAGATT+AGG 0.333003 5_1:-26023978 Msa0725920:CDS
TGCTTCTTACAATACTAATA+TGG 0.334777 5_1:+26022405 None:intergenic
GGGGTTGAGGTGAGATGGGT+TGG 0.341173 5_1:-26022669 Msa0725920:three_prime_UTR
GACCGTAAATGGTGTCTTCC+TGG 0.357239 5_1:-26023946 Msa0725920:CDS
GCGGTAGTTAAAGTTGTTAC+TGG 0.363689 5_1:-26024473 None:intergenic
CGTGACATAGAACTTTGATA+TGG 0.368803 5_1:+26022809 None:intergenic
CACCATCCTCCATTGTTATT+AGG 0.369879 5_1:+26023874 None:intergenic
GCTATTAAAGGGTCAAGAAC+AGG 0.379089 5_1:-26023012 Msa0725920:CDS
TTCCATAACCTTGACTGTAT+AGG 0.380723 5_1:+26024049 None:intergenic
TGGCCAAGCTTTGTCTTTCA+AGG 0.384678 5_1:-26022932 Msa0725920:CDS
GATGCCAATGTCTAGAAATT+GGG 0.384818 5_1:-26022986 Msa0725920:CDS
AGCCAGGAAGACACCATTTA+CGG 0.387805 5_1:+26023944 None:intergenic
GAAGCTAGCAAAGAAGATTA+TGG 0.393919 5_1:-26022492 Msa0725920:three_prime_UTR
TGCTTTGAGATTAGGTGTGC+TGG 0.396638 5_1:-26023970 Msa0725920:CDS
AATTCCTCCCCTTCTTCTGC+AGG 0.397486 5_1:+26023116 None:intergenic
ACCAGCTGGGGCAGCATTGT+TGG 0.398932 5_1:+26022879 None:intergenic
AGTTGAAGAAGTTTATTGTT+TGG 0.403507 5_1:-26022204 Msa0725920:three_prime_UTR
TTATTAGGCAAGGCATTGTT+TGG 0.406087 5_1:+26023889 None:intergenic
GTATAACTCAATAGTATACT+AGG 0.407168 5_1:-26022716 Msa0725920:three_prime_UTR
ATTTACCTTCTGTAAGAAAC+AGG 0.410554 5_1:+26023775 None:intergenic
TATGGTGTGTCTAACGGAAT+TGG 0.414245 5_1:+26022827 None:intergenic
TAATTGAAATTGAAATTCTA+GGG 0.415500 5_1:-26022638 Msa0725920:three_prime_UTR
GGTGTGCTGGTGACCGTAAA+TGG 0.417502 5_1:-26023957 Msa0725920:CDS
CTTAATTTATAGACCTTTGA+GGG 0.421096 5_1:+26024425 None:intergenic
AACCTATACAGTCAAGGTTA+TGG 0.427075 5_1:-26024051 Msa0725920:CDS
CTTATGGTTATGGTGGAGGA+TGG 0.431228 5_1:-26024251 Msa0725920:CDS
GTAACAAATGTGGGTGGTGC+TGG 0.440862 5_1:-26023051 Msa0725920:CDS
TACATTCAGTAGCTATTAAA+GGG 0.441653 5_1:-26023023 Msa0725920:CDS
TTGAGGTGAGATGGGTTGGT+TGG 0.450685 5_1:-26022665 Msa0725920:three_prime_UTR
GGAATTAGGTTCACAATCAA+TGG 0.459198 5_1:-26023099 Msa0725920:CDS
ACAATGCTGCCCCAGCTGGT+TGG 0.464148 5_1:-26022876 Msa0725920:CDS
TCCAACAATGCTGCCCCAGC+TGG 0.465999 5_1:-26022880 Msa0725920:CDS
TGAGAGTGAGGAAAGAATGA+AGG 0.473025 5_1:+26024394 None:intergenic
ACTTAATTTATAGACCTTTG+AGG 0.482988 5_1:+26024424 None:intergenic
AGAGTGAAAGTAGATACAAT+TGG 0.483155 5_1:+26024449 None:intergenic
TAACCTTGAAAGACAAAGCT+TGG 0.500681 5_1:+26022929 None:intergenic
TCTGCTTATGGTTATGGTGG+AGG 0.502421 5_1:-26024255 Msa0725920:CDS
TTGTTCCTGTTTCTTACAGA+AGG 0.505585 5_1:-26023780 Msa0725920:intron
TCCTCCATTGTTATTAGGCA+AGG 0.509324 5_1:+26023879 None:intergenic
AGTGATGCATCAGGAACAAT+GGG 0.509766 5_1:-26024198 Msa0725920:intron
ATGGTGTGTCTAACGGAATT+GGG 0.514181 5_1:+26022828 None:intergenic
GTAGGGTACCCTGCAGAAGA+AGG 0.516806 5_1:-26023125 Msa0725920:intron
TGACCCCAATTTCTAGACAT+TGG 0.519449 5_1:+26022982 None:intergenic
TATGGAGGAAGTGATGCATC+AGG 0.519711 5_1:-26024207 Msa0725920:CDS
TGACCAAAAGACCAACCAGC+TGG 0.520912 5_1:+26022865 None:intergenic
GAGTGAAAGTAGATACAATT+GGG 0.521517 5_1:+26024450 None:intergenic
TCATCTGCTTATGGTTATGG+TGG 0.521601 5_1:-26024258 Msa0725920:CDS
TTCAACAGTGGTTTGAGCTG+TGG 0.522814 5_1:-26023997 Msa0725920:CDS
TGAGGAAAGAATGAAGGGTA+AGG 0.527435 5_1:+26024400 None:intergenic
AGAATTGCTCAATACAAAGC+TGG 0.532239 5_1:-26023805 Msa0725920:CDS
TTATGGTTATGGTGGAGGAT+GGG 0.534886 5_1:-26024250 Msa0725920:CDS
TTAGGCAAGGCATTGTTTGG+TGG 0.537849 5_1:+26023892 None:intergenic
CTGAGTGATTAATAGTATGT+TGG 0.542087 5_1:-26022346 Msa0725920:three_prime_UTR
AGATCAAAGTGTTGCAAAGG+AGG 0.543969 5_1:+26023847 None:intergenic
TTCAAGGTTACAACAAGTGA+TGG 0.544265 5_1:-26022916 Msa0725920:CDS
GACCAAAAGACCAACCAGCT+GGG 0.545554 5_1:+26022866 None:intergenic
GCAGTGACCAAAATAGAGCC+AGG 0.547622 5_1:+26023928 None:intergenic
ATTCCTCCCCTTCTTCTGCA+GGG 0.548478 5_1:+26023117 None:intergenic
CTTTGATATGGTGTGTCTAA+CGG 0.551730 5_1:+26022821 None:intergenic
TACTAGAACTAAGTTGAAGT+AGG 0.551749 5_1:+26023071 None:intergenic
TAGGGTACCCTGCAGAAGAA+GGG 0.557129 5_1:-26023124 Msa0725920:CDS
AATGTGAAGTTGTGAGAGTG+AGG 0.558907 5_1:+26024382 None:intergenic
TACTTTCACTCTCCCCTCAA+AGG 0.560368 5_1:-26024438 Msa0725920:five_prime_UTR
ACGGAATTGGGCACCAGTGT+AGG 0.562519 5_1:+26022840 None:intergenic
AAAGACTCCAATAATCAAGA+AGG 0.564317 5_1:+26022536 None:intergenic
AAGTGATGCATCAGGAACAA+TGG 0.564601 5_1:-26024199 Msa0725920:CDS
GCTTCAATCAAAATGATGAA+AGG 0.569134 5_1:+26022582 None:intergenic
ATGTCCTATGAAGCAAGTAA+TGG 0.569719 5_1:-26022317 Msa0725920:three_prime_UTR
CTTAGTTCTAGTAACAAATG+TGG 0.570683 5_1:-26023061 Msa0725920:CDS
GAGAGTGAGGAAAGAATGAA+GGG 0.583315 5_1:+26024395 None:intergenic
TTCTTACAATACTAATATGG+CGG 0.586489 5_1:+26022408 None:intergenic
GATCAAAGTGTTGCAAAGGA+GGG 0.592393 5_1:+26023848 None:intergenic
GCAAGATCAAAGTGTTGCAA+AGG 0.592711 5_1:+26023844 None:intergenic
CTAGGGGTTAGAAAATGTGA+AGG 0.595417 5_1:-26022621 Msa0725920:three_prime_UTR
TCTTACAATACTAATATGGC+GGG 0.598320 5_1:+26022409 None:intergenic
TATAACTCAATAGTATACTA+GGG 0.598944 5_1:-26022715 Msa0725920:three_prime_UTR
TTAGTTCTAGTAACAAATGT+GGG 0.599321 5_1:-26023060 Msa0725920:CDS
AATGCCTTGCCTAATAACAA+TGG 0.606510 5_1:-26023883 Msa0725920:CDS
CTATTAAAGGGTCAAGAACA+GGG 0.615693 5_1:-26023011 Msa0725920:CDS
AATTGAAATTGAAATTCTAG+GGG 0.620944 5_1:-26022637 Msa0725920:three_prime_UTR
TAGGGGTTAGAAAATGTGAA+GGG 0.621401 5_1:-26022620 Msa0725920:three_prime_UTR
ATGCCAATGTCTAGAAATTG+GGG 0.621765 5_1:-26022985 Msa0725920:CDS
AGGGTACCCTGCAGAAGAAG+GGG 0.622412 5_1:-26023123 Msa0725920:CDS
ATAATACATCAATTAACAAG+AGG 0.624708 5_1:+26022262 None:intergenic
ACCAAAAGACCAACCAGCTG+GGG 0.625454 5_1:+26022867 None:intergenic
AGCACAGCTTTGTTCAACAG+TGG 0.628810 5_1:-26024009 Msa0725920:CDS
TGCCTAATAACAATGGAGGA+TGG 0.634087 5_1:-26023876 Msa0725920:CDS
TACAATACTAATATGGCGGG+TGG 0.634917 5_1:+26022412 None:intergenic
GCACATGCAACTTTCTATGG+AGG 0.636010 5_1:-26024222 Msa0725920:CDS
GCCTTGCCTAATAACAATGG+AGG 0.642659 5_1:-26023880 Msa0725920:CDS
TTAATTTATAGACCTTTGAG+GGG 0.643712 5_1:+26024426 None:intergenic
TATGGAAACCTATACAGTCA+AGG 0.647219 5_1:-26024057 Msa0725920:CDS
GTACCCTGCAGAAGAAGGGG+AGG 0.667861 5_1:-26023120 Msa0725920:CDS
GTTCTAGTAACAAATGTGGG+TGG 0.696895 5_1:-26023057 Msa0725920:CDS
TTAAAGGGTCAAGAACAGGG+TGG 0.777410 5_1:-26023008 Msa0725920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTTTTTATTAAAAAA+AGG - chr5_1:26023422-26023441 Msa0725920:intron 0.0%
!!! AAATATTTTTTATTAAAAAA+AGG - chr5_1:26023422-26023441 Msa0725920:intron 0.0%
!!! TTTTTTTTTTTTGTAATGAA+GGG + chr5_1:26022344-26022363 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGTAATGA+AGG + chr5_1:26022345-26022364 None:intergenic 10.0%
!! TCATTACAAAAAAAAAAAAA+TGG - chr5_1:26022345-26022364 Msa0725920:three_prime_UTR 10.0%
!!! TTTAAAATTATTTATTAGAG+AGG + chr5_1:26023336-26023355 None:intergenic 10.0%
!!! ACTAATATTAATTATTGTTT+TGG + chr5_1:26023369-26023388 None:intergenic 10.0%
!!! TTTTTTTTTTTTGTAATGAA+GGG + chr5_1:26022344-26022363 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGTAATGA+AGG + chr5_1:26022345-26022364 None:intergenic 10.0%
!! TCATTACAAAAAAAAAAAAA+TGG - chr5_1:26022345-26022364 Msa0725920:three_prime_UTR 10.0%
!!! TTTAAAATTATTTATTAGAG+AGG + chr5_1:26023336-26023355 None:intergenic 10.0%
!!! ACTAATATTAATTATTGTTT+TGG + chr5_1:26023369-26023388 None:intergenic 10.0%
!! TTTATACTATTTAAGCAATT+TGG - chr5_1:26022527-26022546 Msa0725920:three_prime_UTR 15.0%
!! ATTAAACATATTAGTCAAAA+GGG + chr5_1:26022559-26022578 None:intergenic 15.0%
!! TATTAAACATATTAGTCAAA+AGG + chr5_1:26022560-26022579 None:intergenic 15.0%
!!! ATATTGAATTTTTTTTTAGG+TGG - chr5_1:26022577-26022596 Msa0725920:three_prime_UTR 15.0%
!! CTAATATAAAACAAAAAGTA+GGG + chr5_1:26023071-26023090 None:intergenic 15.0%
!! TCTAATATAAAACAAAAAGT+AGG + chr5_1:26023072-26023091 None:intergenic 15.0%
!! TAATTGAAATTGAAATTCTA+GGG - chr5_1:26024029-26024048 Msa0725920:CDS 15.0%
!!! ATCTTAGTATTTTACTATTT+TGG - chr5_1:26024214-26024233 Msa0725920:CDS 15.0%
!! TTTATACTATTTAAGCAATT+TGG - chr5_1:26022527-26022546 Msa0725920:three_prime_UTR 15.0%
!! ATTAAACATATTAGTCAAAA+GGG + chr5_1:26022559-26022578 None:intergenic 15.0%
!! TATTAAACATATTAGTCAAA+AGG + chr5_1:26022560-26022579 None:intergenic 15.0%
!!! ATATTGAATTTTTTTTTAGG+TGG - chr5_1:26022577-26022596 Msa0725920:three_prime_UTR 15.0%
!! CTAATATAAAACAAAAAGTA+GGG + chr5_1:26023071-26023090 None:intergenic 15.0%
!! TCTAATATAAAACAAAAAGT+AGG + chr5_1:26023072-26023091 None:intergenic 15.0%
!! TAATTGAAATTGAAATTCTA+GGG - chr5_1:26024029-26024048 Msa0725920:CDS 15.0%
!!! ATCTTAGTATTTTACTATTT+TGG - chr5_1:26024214-26024233 Msa0725920:CDS 15.0%
!! TTAAACATATTAGTCAAAAG+GGG + chr5_1:26022558-26022577 None:intergenic 20.0%
!! TTGAGATTAAATTTGTGTAA+TGG - chr5_1:26022955-26022974 Msa0725920:CDS 20.0%
!! TGAGATTAAATTTGTGTAAT+GGG - chr5_1:26022956-26022975 Msa0725920:CDS 20.0%
!!! TGTATTTTTTTCTCTCTAAA+TGG - chr5_1:26023169-26023188 Msa0725920:intron 20.0%
!!! GTATTTTTTTCTCTCTAAAT+GGG - chr5_1:26023170-26023189 Msa0725920:intron 20.0%
!! AGTATAAATTACTTACAACT+TGG + chr5_1:26023479-26023498 None:intergenic 20.0%
!! TATAACTCAATAGTATACTA+GGG - chr5_1:26023952-26023971 Msa0725920:CDS 20.0%
!! GTAATTGAAATTGAAATTCT+AGG - chr5_1:26024028-26024047 Msa0725920:CDS 20.0%
!! AATTGAAATTGAAATTCTAG+GGG - chr5_1:26024030-26024049 Msa0725920:CDS 20.0%
!! ATAATACATCAATTAACAAG+AGG + chr5_1:26024408-26024427 None:intergenic 20.0%
!! TTAAACATATTAGTCAAAAG+GGG + chr5_1:26022558-26022577 None:intergenic 20.0%
!! TTGAGATTAAATTTGTGTAA+TGG - chr5_1:26022955-26022974 Msa0725920:CDS 20.0%
!! TGAGATTAAATTTGTGTAAT+GGG - chr5_1:26022956-26022975 Msa0725920:CDS 20.0%
!!! TGTATTTTTTTCTCTCTAAA+TGG - chr5_1:26023169-26023188 Msa0725920:intron 20.0%
!!! GTATTTTTTTCTCTCTAAAT+GGG - chr5_1:26023170-26023189 Msa0725920:intron 20.0%
!! AGTATAAATTACTTACAACT+TGG + chr5_1:26023479-26023498 None:intergenic 20.0%
!! TATAACTCAATAGTATACTA+GGG - chr5_1:26023952-26023971 Msa0725920:CDS 20.0%
!! GTAATTGAAATTGAAATTCT+AGG - chr5_1:26024028-26024047 Msa0725920:CDS 20.0%
!! AATTGAAATTGAAATTCTAG+GGG - chr5_1:26024030-26024049 Msa0725920:CDS 20.0%
!! ATAATACATCAATTAACAAG+AGG + chr5_1:26024408-26024427 None:intergenic 20.0%
! TTAATTTATAGACCTTTGAG+GGG + chr5_1:26022244-26022263 None:intergenic 25.0%
! CTTAATTTATAGACCTTTGA+GGG + chr5_1:26022245-26022264 None:intergenic 25.0%
! ACTTAATTTATAGACCTTTG+AGG + chr5_1:26022246-26022265 None:intergenic 25.0%
! AAAAAAAAAATGGCTCTCAT+TGG - chr5_1:26022355-26022374 Msa0725920:three_prime_UTR 25.0%
! AAAAAAAAATGGCTCTCATT+GGG - chr5_1:26022356-26022375 Msa0725920:three_prime_UTR 25.0%
!!! ATTAAATTTGTGTAATGGGT+TGG - chr5_1:26022960-26022979 Msa0725920:CDS 25.0%
! AACTTTATCTAGCTAGTTAA+TGG - chr5_1:26023120-26023139 Msa0725920:CDS 25.0%
! ACTTTATCTAGCTAGTTAAT+GGG - chr5_1:26023121-26023140 Msa0725920:CDS 25.0%
! TATTTATTAGAGAGGTGAAA+TGG + chr5_1:26023328-26023347 None:intergenic 25.0%
! AAAGGACACTTATATAGAAA+AGG - chr5_1:26023440-26023459 Msa0725920:intron 25.0%
! AGAAGTAATTTATTGTTGTG+TGG - chr5_1:26023513-26023532 Msa0725920:intron 25.0%
!!! TTAGTTCTAGTAACAAATGT+GGG - chr5_1:26023607-26023626 Msa0725920:intron 25.0%
! TACATTCAGTAGCTATTAAA+GGG - chr5_1:26023644-26023663 Msa0725920:intron 25.0%
! CAAAGCAACAATTATCTTAA+TGG - chr5_1:26023715-26023734 Msa0725920:intron 25.0%
! GTATAACTCAATAGTATACT+AGG - chr5_1:26023951-26023970 Msa0725920:CDS 25.0%
!!! ATTAGATAGTATGCTAGTTT+TGG - chr5_1:26023976-26023995 Msa0725920:CDS 25.0%
!!! TTAGATAGTATGCTAGTTTT+GGG - chr5_1:26023977-26023996 Msa0725920:CDS 25.0%
! CAAGATGGTTCATATTTAAT+TGG - chr5_1:26024107-26024126 Msa0725920:intron 25.0%
!!! GTATTTTACTATTTTGGAAG+TGG - chr5_1:26024220-26024239 Msa0725920:CDS 25.0%
! TTCTTACAATACTAATATGG+CGG + chr5_1:26024262-26024281 None:intergenic 25.0%
! TGCTTCTTACAATACTAATA+TGG + chr5_1:26024265-26024284 None:intergenic 25.0%
! ATTGAAACAGTTATGTTTGT+TGG - chr5_1:26024436-26024455 Msa0725920:five_prime_UTR 25.0%
! AGTTGAAGAAGTTTATTGTT+TGG - chr5_1:26024463-26024482 Msa0725920:five_prime_UTR 25.0%
! TTAATTTATAGACCTTTGAG+GGG + chr5_1:26022244-26022263 None:intergenic 25.0%
! CTTAATTTATAGACCTTTGA+GGG + chr5_1:26022245-26022264 None:intergenic 25.0%
! ACTTAATTTATAGACCTTTG+AGG + chr5_1:26022246-26022265 None:intergenic 25.0%
! AAAAAAAAAATGGCTCTCAT+TGG - chr5_1:26022355-26022374 Msa0725920:three_prime_UTR 25.0%
! AAAAAAAAATGGCTCTCATT+GGG - chr5_1:26022356-26022375 Msa0725920:three_prime_UTR 25.0%
!!! ATTAAATTTGTGTAATGGGT+TGG - chr5_1:26022960-26022979 Msa0725920:CDS 25.0%
! AACTTTATCTAGCTAGTTAA+TGG - chr5_1:26023120-26023139 Msa0725920:CDS 25.0%
! ACTTTATCTAGCTAGTTAAT+GGG - chr5_1:26023121-26023140 Msa0725920:CDS 25.0%
! TATTTATTAGAGAGGTGAAA+TGG + chr5_1:26023328-26023347 None:intergenic 25.0%
! AAAGGACACTTATATAGAAA+AGG - chr5_1:26023440-26023459 Msa0725920:intron 25.0%
! AGAAGTAATTTATTGTTGTG+TGG - chr5_1:26023513-26023532 Msa0725920:intron 25.0%
!!! TTAGTTCTAGTAACAAATGT+GGG - chr5_1:26023607-26023626 Msa0725920:intron 25.0%
! TACATTCAGTAGCTATTAAA+GGG - chr5_1:26023644-26023663 Msa0725920:intron 25.0%
! CAAAGCAACAATTATCTTAA+TGG - chr5_1:26023715-26023734 Msa0725920:intron 25.0%
! GTATAACTCAATAGTATACT+AGG - chr5_1:26023951-26023970 Msa0725920:CDS 25.0%
!!! ATTAGATAGTATGCTAGTTT+TGG - chr5_1:26023976-26023995 Msa0725920:CDS 25.0%
!!! TTAGATAGTATGCTAGTTTT+GGG - chr5_1:26023977-26023996 Msa0725920:CDS 25.0%
! CAAGATGGTTCATATTTAAT+TGG - chr5_1:26024107-26024126 Msa0725920:intron 25.0%
!!! GTATTTTACTATTTTGGAAG+TGG - chr5_1:26024220-26024239 Msa0725920:CDS 25.0%
! TTCTTACAATACTAATATGG+CGG + chr5_1:26024262-26024281 None:intergenic 25.0%
! TGCTTCTTACAATACTAATA+TGG + chr5_1:26024265-26024284 None:intergenic 25.0%
! ATTGAAACAGTTATGTTTGT+TGG - chr5_1:26024436-26024455 Msa0725920:five_prime_UTR 25.0%
! AGTTGAAGAAGTTTATTGTT+TGG - chr5_1:26024463-26024482 Msa0725920:five_prime_UTR 25.0%
GAGTGAAAGTAGATACAATT+GGG + chr5_1:26022220-26022239 None:intergenic 30.0%
AGAGTGAAAGTAGATACAAT+TGG + chr5_1:26022221-26022240 None:intergenic 30.0%
! ACTATGTTTTCATCTGCTTA+TGG - chr5_1:26022400-26022419 Msa0725920:three_prime_UTR 30.0%
! TTTTCATCTGCTTATGGTTA+TGG - chr5_1:26022406-26022425 Msa0725920:three_prime_UTR 30.0%
! TGAGCAATTCTAAGAAAAAC+AGG + chr5_1:26022853-26022872 None:intergenic 30.0%
ATTTACCTTCTGTAAGAAAC+AGG + chr5_1:26022895-26022914 None:intergenic 30.0%
CAAAATGCAACAAAAAGTGA+AGG + chr5_1:26022938-26022957 None:intergenic 30.0%
!! TGTCACTTTCAACTTGTAAA+TGG - chr5_1:26022990-26023009 Msa0725920:CDS 30.0%
CTTTATCTAGCTAGTTAATG+GGG - chr5_1:26023122-26023141 Msa0725920:CDS 30.0%
!! GTGAAGGGTACTATATAAAA+AGG + chr5_1:26023294-26023313 None:intergenic 30.0%
ATGGTACAATTATCAGTGAA+GGG + chr5_1:26023309-26023328 None:intergenic 30.0%
AATGGTACAATTATCAGTGA+AGG + chr5_1:26023310-26023329 None:intergenic 30.0%
! TACTAGAACTAAGTTGAAGT+AGG + chr5_1:26023599-26023618 None:intergenic 30.0%
!! CTTAGTTCTAGTAACAAATG+TGG - chr5_1:26023606-26023625 Msa0725920:intron 30.0%
GTACATTCAGTAGCTATTAA+AGG - chr5_1:26023643-26023662 Msa0725920:intron 30.0%
!!! TAGATAGTATGCTAGTTTTG+GGG - chr5_1:26023978-26023997 Msa0725920:CDS 30.0%
GCTTCAATCAAAATGATGAA+AGG + chr5_1:26024088-26024107 None:intergenic 30.0%
!!! TCATTTTGATTGAAGCAAGA+TGG - chr5_1:26024092-26024111 Msa0725920:intron 30.0%
AATTGGACCTTCTTGATTAT+TGG - chr5_1:26024124-26024143 Msa0725920:intron 30.0%
AAAGACTCCAATAATCAAGA+AGG + chr5_1:26024134-26024153 None:intergenic 30.0%
! GTCTTTTTCTAATCTTCAGT+TGG - chr5_1:26024148-26024167 Msa0725920:intron 30.0%
!! TTTTACTATTTTGGAAGTGG+TGG - chr5_1:26024223-26024242 Msa0725920:CDS 30.0%
TCTTACAATACTAATATGGC+GGG + chr5_1:26024261-26024280 None:intergenic 30.0%
CTGAGTGATTAATAGTATGT+TGG - chr5_1:26024321-26024340 Msa0725920:exon 30.0%
GAGTGAAAGTAGATACAATT+GGG + chr5_1:26022220-26022239 None:intergenic 30.0%
AGAGTGAAAGTAGATACAAT+TGG + chr5_1:26022221-26022240 None:intergenic 30.0%
! ACTATGTTTTCATCTGCTTA+TGG - chr5_1:26022400-26022419 Msa0725920:three_prime_UTR 30.0%
! TTTTCATCTGCTTATGGTTA+TGG - chr5_1:26022406-26022425 Msa0725920:three_prime_UTR 30.0%
! TGAGCAATTCTAAGAAAAAC+AGG + chr5_1:26022853-26022872 None:intergenic 30.0%
ATTTACCTTCTGTAAGAAAC+AGG + chr5_1:26022895-26022914 None:intergenic 30.0%
CAAAATGCAACAAAAAGTGA+AGG + chr5_1:26022938-26022957 None:intergenic 30.0%
!! TGTCACTTTCAACTTGTAAA+TGG - chr5_1:26022990-26023009 Msa0725920:CDS 30.0%
CTTTATCTAGCTAGTTAATG+GGG - chr5_1:26023122-26023141 Msa0725920:CDS 30.0%
!! GTGAAGGGTACTATATAAAA+AGG + chr5_1:26023294-26023313 None:intergenic 30.0%
ATGGTACAATTATCAGTGAA+GGG + chr5_1:26023309-26023328 None:intergenic 30.0%
AATGGTACAATTATCAGTGA+AGG + chr5_1:26023310-26023329 None:intergenic 30.0%
! TACTAGAACTAAGTTGAAGT+AGG + chr5_1:26023599-26023618 None:intergenic 30.0%
!! CTTAGTTCTAGTAACAAATG+TGG - chr5_1:26023606-26023625 Msa0725920:intron 30.0%
GTACATTCAGTAGCTATTAA+AGG - chr5_1:26023643-26023662 Msa0725920:intron 30.0%
!!! TAGATAGTATGCTAGTTTTG+GGG - chr5_1:26023978-26023997 Msa0725920:CDS 30.0%
GCTTCAATCAAAATGATGAA+AGG + chr5_1:26024088-26024107 None:intergenic 30.0%
!!! TCATTTTGATTGAAGCAAGA+TGG - chr5_1:26024092-26024111 Msa0725920:intron 30.0%
AATTGGACCTTCTTGATTAT+TGG - chr5_1:26024124-26024143 Msa0725920:intron 30.0%
AAAGACTCCAATAATCAAGA+AGG + chr5_1:26024134-26024153 None:intergenic 30.0%
! GTCTTTTTCTAATCTTCAGT+TGG - chr5_1:26024148-26024167 Msa0725920:intron 30.0%
!! TTTTACTATTTTGGAAGTGG+TGG - chr5_1:26024223-26024242 Msa0725920:CDS 30.0%
TCTTACAATACTAATATGGC+GGG + chr5_1:26024261-26024280 None:intergenic 30.0%
CTGAGTGATTAATAGTATGT+TGG - chr5_1:26024321-26024340 Msa0725920:exon 30.0%
AATGCACATGCAACTTTCTA+TGG - chr5_1:26022442-26022461 Msa0725920:three_prime_UTR 35.0%
ACATATTAGTCAAAAGGGGT+TGG + chr5_1:26022554-26022573 None:intergenic 35.0%
!!! TTTTTTTTAGGTGGTGCATG+TGG - chr5_1:26022586-26022605 Msa0725920:three_prime_UTR 35.0%
TATGGAAACCTATACAGTCA+AGG - chr5_1:26022610-26022629 Msa0725920:three_prime_UTR 35.0%
AACCTATACAGTCAAGGTTA+TGG - chr5_1:26022616-26022635 Msa0725920:three_prime_UTR 35.0%
TTCCATAACCTTGACTGTAT+AGG + chr5_1:26022621-26022640 None:intergenic 35.0%
!! TTATTAGGCAAGGCATTGTT+TGG + chr5_1:26022781-26022800 None:intergenic 35.0%
AATGCCTTGCCTAATAACAA+TGG - chr5_1:26022784-26022803 Msa0725920:three_prime_UTR 35.0%
AGAATTGCTCAATACAAAGC+TGG - chr5_1:26022862-26022881 Msa0725920:CDS 35.0%
! TTGTTCCTGTTTCTTACAGA+AGG - chr5_1:26022887-26022906 Msa0725920:CDS 35.0%
! ACAAGTTGAAAGTGACATGA+AGG + chr5_1:26022987-26023006 None:intergenic 35.0%
ATTGTTGTGTGGATTTGTGT+AGG - chr5_1:26023524-26023543 Msa0725920:intron 35.0%
TTGTTGTGTGGATTTGTGTA+GGG - chr5_1:26023525-26023544 Msa0725920:intron 35.0%
GGAATTAGGTTCACAATCAA+TGG - chr5_1:26023568-26023587 Msa0725920:intron 35.0%
CTATTAAAGGGTCAAGAACA+GGG - chr5_1:26023656-26023675 Msa0725920:intron 35.0%
GATGCCAATGTCTAGAAATT+GGG - chr5_1:26023681-26023700 Msa0725920:intron 35.0%
ATGCCAATGTCTAGAAATTG+GGG - chr5_1:26023682-26023701 Msa0725920:intron 35.0%
CTAGAAATTGGGGTCAAAAT+TGG - chr5_1:26023692-26023711 Msa0725920:intron 35.0%
TAACCTTGAAAGACAAAGCT+TGG + chr5_1:26023741-26023760 None:intergenic 35.0%
TTCAAGGTTACAACAAGTGA+TGG - chr5_1:26023751-26023770 Msa0725920:intron 35.0%
CTTTGATATGGTGTGTCTAA+CGG + chr5_1:26023849-26023868 None:intergenic 35.0%
CGTGACATAGAACTTTGATA+TGG + chr5_1:26023861-26023880 None:intergenic 35.0%
!!! AGATAGTATGCTAGTTTTGG+GGG - chr5_1:26023979-26023998 Msa0725920:CDS 35.0%
TAGGGGTTAGAAAATGTGAA+GGG - chr5_1:26024047-26024066 Msa0725920:CDS 35.0%
!!! GTGAAGGGCTTTTTTTGAAT+TGG - chr5_1:26024062-26024081 Msa0725920:CDS 35.0%
GAAGCTAGCAAAGAAGATTA+TGG - chr5_1:26024175-26024194 Msa0725920:intron 35.0%
ATGTCCTATGAAGCAAGTAA+TGG - chr5_1:26024350-26024369 Msa0725920:five_prime_UTR 35.0%
CTTTCCATTACTTGCTTCAT+AGG + chr5_1:26024357-26024376 None:intergenic 35.0%
AATGCACATGCAACTTTCTA+TGG - chr5_1:26022442-26022461 Msa0725920:three_prime_UTR 35.0%
ACATATTAGTCAAAAGGGGT+TGG + chr5_1:26022554-26022573 None:intergenic 35.0%
!!! TTTTTTTTAGGTGGTGCATG+TGG - chr5_1:26022586-26022605 Msa0725920:three_prime_UTR 35.0%
TATGGAAACCTATACAGTCA+AGG - chr5_1:26022610-26022629 Msa0725920:three_prime_UTR 35.0%
AACCTATACAGTCAAGGTTA+TGG - chr5_1:26022616-26022635 Msa0725920:three_prime_UTR 35.0%
TTCCATAACCTTGACTGTAT+AGG + chr5_1:26022621-26022640 None:intergenic 35.0%
!! TTATTAGGCAAGGCATTGTT+TGG + chr5_1:26022781-26022800 None:intergenic 35.0%
AATGCCTTGCCTAATAACAA+TGG - chr5_1:26022784-26022803 Msa0725920:three_prime_UTR 35.0%
AGAATTGCTCAATACAAAGC+TGG - chr5_1:26022862-26022881 Msa0725920:CDS 35.0%
! TTGTTCCTGTTTCTTACAGA+AGG - chr5_1:26022887-26022906 Msa0725920:CDS 35.0%
! ACAAGTTGAAAGTGACATGA+AGG + chr5_1:26022987-26023006 None:intergenic 35.0%
ATTGTTGTGTGGATTTGTGT+AGG - chr5_1:26023524-26023543 Msa0725920:intron 35.0%
TTGTTGTGTGGATTTGTGTA+GGG - chr5_1:26023525-26023544 Msa0725920:intron 35.0%
GGAATTAGGTTCACAATCAA+TGG - chr5_1:26023568-26023587 Msa0725920:intron 35.0%
CTATTAAAGGGTCAAGAACA+GGG - chr5_1:26023656-26023675 Msa0725920:intron 35.0%
GATGCCAATGTCTAGAAATT+GGG - chr5_1:26023681-26023700 Msa0725920:intron 35.0%
ATGCCAATGTCTAGAAATTG+GGG - chr5_1:26023682-26023701 Msa0725920:intron 35.0%
CTAGAAATTGGGGTCAAAAT+TGG - chr5_1:26023692-26023711 Msa0725920:intron 35.0%
TAACCTTGAAAGACAAAGCT+TGG + chr5_1:26023741-26023760 None:intergenic 35.0%
TTCAAGGTTACAACAAGTGA+TGG - chr5_1:26023751-26023770 Msa0725920:intron 35.0%
CTTTGATATGGTGTGTCTAA+CGG + chr5_1:26023849-26023868 None:intergenic 35.0%
CGTGACATAGAACTTTGATA+TGG + chr5_1:26023861-26023880 None:intergenic 35.0%
!!! AGATAGTATGCTAGTTTTGG+GGG - chr5_1:26023979-26023998 Msa0725920:CDS 35.0%
TAGGGGTTAGAAAATGTGAA+GGG - chr5_1:26024047-26024066 Msa0725920:CDS 35.0%
!!! GTGAAGGGCTTTTTTTGAAT+TGG - chr5_1:26024062-26024081 Msa0725920:CDS 35.0%
GAAGCTAGCAAAGAAGATTA+TGG - chr5_1:26024175-26024194 Msa0725920:intron 35.0%
ATGTCCTATGAAGCAAGTAA+TGG - chr5_1:26024350-26024369 Msa0725920:five_prime_UTR 35.0%
CTTTCCATTACTTGCTTCAT+AGG + chr5_1:26024357-26024376 None:intergenic 35.0%
TGAGGAAAGAATGAAGGGTA+AGG + chr5_1:26022270-26022289 None:intergenic 40.0%
GAGAGTGAGGAAAGAATGAA+GGG + chr5_1:26022275-26022294 None:intergenic 40.0%
TGAGAGTGAGGAAAGAATGA+AGG + chr5_1:26022276-26022295 None:intergenic 40.0%
AATGTGAAGTTGTGAGAGTG+AGG + chr5_1:26022288-26022307 None:intergenic 40.0%
! TCTCATTGGGTTGTTCTTCA+TGG - chr5_1:26022369-26022388 Msa0725920:three_prime_UTR 40.0%
TCATCTGCTTATGGTTATGG+TGG - chr5_1:26022409-26022428 Msa0725920:three_prime_UTR 40.0%
! TTATGGTTATGGTGGAGGAT+GGG - chr5_1:26022417-26022436 Msa0725920:three_prime_UTR 40.0%
AAGTGATGCATCAGGAACAA+TGG - chr5_1:26022468-26022487 Msa0725920:three_prime_UTR 40.0%
AGTGATGCATCAGGAACAAT+GGG - chr5_1:26022469-26022488 Msa0725920:three_prime_UTR 40.0%
!! GTGGTTCTTGCTTTGAGATT+AGG - chr5_1:26022689-26022708 Msa0725920:three_prime_UTR 40.0%
! TCCTCCATTGTTATTAGGCA+AGG + chr5_1:26022791-26022810 None:intergenic 40.0%
TGCCTAATAACAATGGAGGA+TGG - chr5_1:26022791-26022810 Msa0725920:three_prime_UTR 40.0%
! CACCATCCTCCATTGTTATT+AGG + chr5_1:26022796-26022815 None:intergenic 40.0%
!! GATCAAAGTGTTGCAAAGGA+GGG + chr5_1:26022822-26022841 None:intergenic 40.0%
!! AGATCAAAGTGTTGCAAAGG+AGG + chr5_1:26022823-26022842 None:intergenic 40.0%
!! GCAAGATCAAAGTGTTGCAA+AGG + chr5_1:26022826-26022845 None:intergenic 40.0%
ATCTAGCTAGTTAATGGGGT+TGG - chr5_1:26023126-26023145 Msa0725920:intron 40.0%
GTTCTAGTAACAAATGTGGG+TGG - chr5_1:26023610-26023629 Msa0725920:intron 40.0%
GCTATTAAAGGGTCAAGAAC+AGG - chr5_1:26023655-26023674 Msa0725920:intron 40.0%
GGATGCCAATGTCTAGAAAT+TGG - chr5_1:26023680-26023699 Msa0725920:intron 40.0%
! TGACCCCAATTTCTAGACAT+TGG + chr5_1:26023688-26023707 None:intergenic 40.0%
ATGGTGTGTCTAACGGAATT+GGG + chr5_1:26023842-26023861 None:intergenic 40.0%
TATGGTGTGTCTAACGGAAT+TGG + chr5_1:26023843-26023862 None:intergenic 40.0%
CTAGGGGTTAGAAAATGTGA+AGG - chr5_1:26024046-26024065 Msa0725920:CDS 40.0%
! TACAATACTAATATGGCGGG+TGG + chr5_1:26024258-26024277 None:intergenic 40.0%
TGAGGAAAGAATGAAGGGTA+AGG + chr5_1:26022270-26022289 None:intergenic 40.0%
GAGAGTGAGGAAAGAATGAA+GGG + chr5_1:26022275-26022294 None:intergenic 40.0%
TGAGAGTGAGGAAAGAATGA+AGG + chr5_1:26022276-26022295 None:intergenic 40.0%
AATGTGAAGTTGTGAGAGTG+AGG + chr5_1:26022288-26022307 None:intergenic 40.0%
! TCTCATTGGGTTGTTCTTCA+TGG - chr5_1:26022369-26022388 Msa0725920:three_prime_UTR 40.0%
TCATCTGCTTATGGTTATGG+TGG - chr5_1:26022409-26022428 Msa0725920:three_prime_UTR 40.0%
! TTATGGTTATGGTGGAGGAT+GGG - chr5_1:26022417-26022436 Msa0725920:three_prime_UTR 40.0%
AAGTGATGCATCAGGAACAA+TGG - chr5_1:26022468-26022487 Msa0725920:three_prime_UTR 40.0%
AGTGATGCATCAGGAACAAT+GGG - chr5_1:26022469-26022488 Msa0725920:three_prime_UTR 40.0%
!! GTGGTTCTTGCTTTGAGATT+AGG - chr5_1:26022689-26022708 Msa0725920:three_prime_UTR 40.0%
! TCCTCCATTGTTATTAGGCA+AGG + chr5_1:26022791-26022810 None:intergenic 40.0%
TGCCTAATAACAATGGAGGA+TGG - chr5_1:26022791-26022810 Msa0725920:three_prime_UTR 40.0%
! CACCATCCTCCATTGTTATT+AGG + chr5_1:26022796-26022815 None:intergenic 40.0%
!! GATCAAAGTGTTGCAAAGGA+GGG + chr5_1:26022822-26022841 None:intergenic 40.0%
!! AGATCAAAGTGTTGCAAAGG+AGG + chr5_1:26022823-26022842 None:intergenic 40.0%
!! GCAAGATCAAAGTGTTGCAA+AGG + chr5_1:26022826-26022845 None:intergenic 40.0%
ATCTAGCTAGTTAATGGGGT+TGG - chr5_1:26023126-26023145 Msa0725920:intron 40.0%
GTTCTAGTAACAAATGTGGG+TGG - chr5_1:26023610-26023629 Msa0725920:intron 40.0%
GCTATTAAAGGGTCAAGAAC+AGG - chr5_1:26023655-26023674 Msa0725920:intron 40.0%
GGATGCCAATGTCTAGAAAT+TGG - chr5_1:26023680-26023699 Msa0725920:intron 40.0%
! TGACCCCAATTTCTAGACAT+TGG + chr5_1:26023688-26023707 None:intergenic 40.0%
ATGGTGTGTCTAACGGAATT+GGG + chr5_1:26023842-26023861 None:intergenic 40.0%
TATGGTGTGTCTAACGGAAT+TGG + chr5_1:26023843-26023862 None:intergenic 40.0%
CTAGGGGTTAGAAAATGTGA+AGG - chr5_1:26024046-26024065 Msa0725920:CDS 40.0%
! TACAATACTAATATGGCGGG+TGG + chr5_1:26024258-26024277 None:intergenic 40.0%
TACTTTCACTCTCCCCTCAA+AGG - chr5_1:26022229-26022248 Msa0725920:three_prime_UTR 45.0%
TCTGCTTATGGTTATGGTGG+AGG - chr5_1:26022412-26022431 Msa0725920:three_prime_UTR 45.0%
! CTTATGGTTATGGTGGAGGA+TGG - chr5_1:26022416-26022435 Msa0725920:three_prime_UTR 45.0%
GCACATGCAACTTTCTATGG+AGG - chr5_1:26022445-26022464 Msa0725920:three_prime_UTR 45.0%
TATGGAGGAAGTGATGCATC+AGG - chr5_1:26022460-26022479 Msa0725920:three_prime_UTR 45.0%
TTAGGTGGTGCATGTGGATA+TGG - chr5_1:26022592-26022611 Msa0725920:three_prime_UTR 45.0%
!! AGCACAGCTTTGTTCAACAG+TGG - chr5_1:26022658-26022677 Msa0725920:three_prime_UTR 45.0%
TTCAACAGTGGTTTGAGCTG+TGG - chr5_1:26022670-26022689 Msa0725920:three_prime_UTR 45.0%
!! TGCTTTGAGATTAGGTGTGC+TGG - chr5_1:26022697-26022716 Msa0725920:three_prime_UTR 45.0%
AGCCAGGAAGACACCATTTA+CGG + chr5_1:26022726-26022745 None:intergenic 45.0%
!!! GTGTCTTCCTGGCTCTATTT+TGG - chr5_1:26022732-26022751 Msa0725920:three_prime_UTR 45.0%
!! TTAGGCAAGGCATTGTTTGG+TGG + chr5_1:26022778-26022797 None:intergenic 45.0%
GCCTTGCCTAATAACAATGG+AGG - chr5_1:26022787-26022806 Msa0725920:three_prime_UTR 45.0%
TTAAAGGGTCAAGAACAGGG+TGG - chr5_1:26023659-26023678 Msa0725920:intron 45.0%
! TGGCCAAGCTTTGTCTTTCA+AGG - chr5_1:26023735-26023754 Msa0725920:intron 45.0%
! TCTTTTGGTCAGACCTACAC+TGG - chr5_1:26023814-26023833 Msa0725920:CDS 45.0%
!!! TATGCTAGTTTTGGGGGTTG+AGG - chr5_1:26023985-26024004 Msa0725920:CDS 45.0%
TACTTTCACTCTCCCCTCAA+AGG - chr5_1:26022229-26022248 Msa0725920:three_prime_UTR 45.0%
TCTGCTTATGGTTATGGTGG+AGG - chr5_1:26022412-26022431 Msa0725920:three_prime_UTR 45.0%
! CTTATGGTTATGGTGGAGGA+TGG - chr5_1:26022416-26022435 Msa0725920:three_prime_UTR 45.0%
GCACATGCAACTTTCTATGG+AGG - chr5_1:26022445-26022464 Msa0725920:three_prime_UTR 45.0%
TATGGAGGAAGTGATGCATC+AGG - chr5_1:26022460-26022479 Msa0725920:three_prime_UTR 45.0%
TTAGGTGGTGCATGTGGATA+TGG - chr5_1:26022592-26022611 Msa0725920:three_prime_UTR 45.0%
!! AGCACAGCTTTGTTCAACAG+TGG - chr5_1:26022658-26022677 Msa0725920:three_prime_UTR 45.0%
TTCAACAGTGGTTTGAGCTG+TGG - chr5_1:26022670-26022689 Msa0725920:three_prime_UTR 45.0%
!! TGCTTTGAGATTAGGTGTGC+TGG - chr5_1:26022697-26022716 Msa0725920:three_prime_UTR 45.0%
AGCCAGGAAGACACCATTTA+CGG + chr5_1:26022726-26022745 None:intergenic 45.0%
!!! GTGTCTTCCTGGCTCTATTT+TGG - chr5_1:26022732-26022751 Msa0725920:three_prime_UTR 45.0%
!! TTAGGCAAGGCATTGTTTGG+TGG + chr5_1:26022778-26022797 None:intergenic 45.0%
GCCTTGCCTAATAACAATGG+AGG - chr5_1:26022787-26022806 Msa0725920:three_prime_UTR 45.0%
TTAAAGGGTCAAGAACAGGG+TGG - chr5_1:26023659-26023678 Msa0725920:intron 45.0%
! TGGCCAAGCTTTGTCTTTCA+AGG - chr5_1:26023735-26023754 Msa0725920:intron 45.0%
! TCTTTTGGTCAGACCTACAC+TGG - chr5_1:26023814-26023833 Msa0725920:CDS 45.0%
!!! TATGCTAGTTTTGGGGGTTG+AGG - chr5_1:26023985-26024004 Msa0725920:CDS 45.0%
!!! TTAATATTGAATTTTTTTTT+AGG - chr5_1:26022574-26022593 Msa0725920:three_prime_UTR 5.0%
!!! TTAATATTGAATTTTTTTTT+AGG - chr5_1:26022574-26022593 Msa0725920:three_prime_UTR 5.0%
GACCGTAAATGGTGTCTTCC+TGG - chr5_1:26022721-26022740 Msa0725920:three_prime_UTR 50.0%
GCAGTGACCAAAATAGAGCC+AGG + chr5_1:26022742-26022761 None:intergenic 50.0%
! TAGGGTACCCTGCAGAAGAA+GGG - chr5_1:26023543-26023562 Msa0725920:intron 50.0%
ATTCCTCCCCTTCTTCTGCA+GGG + chr5_1:26023553-26023572 None:intergenic 50.0%
AATTCCTCCCCTTCTTCTGC+AGG + chr5_1:26023554-26023573 None:intergenic 50.0%
GCAGAAGAAGGGGAGGAATT+AGG - chr5_1:26023554-26023573 Msa0725920:intron 50.0%
GTAACAAATGTGGGTGGTGC+TGG - chr5_1:26023616-26023635 Msa0725920:intron 50.0%
ACCAAAAGACCAACCAGCTG+GGG + chr5_1:26023803-26023822 None:intergenic 50.0%
GACCAAAAGACCAACCAGCT+GGG + chr5_1:26023804-26023823 None:intergenic 50.0%
TGACCAAAAGACCAACCAGC+TGG + chr5_1:26023805-26023824 None:intergenic 50.0%
!! TTTTGGGGGTTGAGGTGAGA+TGG - chr5_1:26023993-26024012 Msa0725920:CDS 50.0%
TTTGGGGGTTGAGGTGAGAT+GGG - chr5_1:26023994-26024013 Msa0725920:CDS 50.0%
!! TTGAGGTGAGATGGGTTGGT+TGG - chr5_1:26024002-26024021 Msa0725920:CDS 50.0%
GACCGTAAATGGTGTCTTCC+TGG - chr5_1:26022721-26022740 Msa0725920:three_prime_UTR 50.0%
GCAGTGACCAAAATAGAGCC+AGG + chr5_1:26022742-26022761 None:intergenic 50.0%
! TAGGGTACCCTGCAGAAGAA+GGG - chr5_1:26023543-26023562 Msa0725920:intron 50.0%
ATTCCTCCCCTTCTTCTGCA+GGG + chr5_1:26023553-26023572 None:intergenic 50.0%
AATTCCTCCCCTTCTTCTGC+AGG + chr5_1:26023554-26023573 None:intergenic 50.0%
GCAGAAGAAGGGGAGGAATT+AGG - chr5_1:26023554-26023573 Msa0725920:intron 50.0%
GTAACAAATGTGGGTGGTGC+TGG - chr5_1:26023616-26023635 Msa0725920:intron 50.0%
ACCAAAAGACCAACCAGCTG+GGG + chr5_1:26023803-26023822 None:intergenic 50.0%
GACCAAAAGACCAACCAGCT+GGG + chr5_1:26023804-26023823 None:intergenic 50.0%
TGACCAAAAGACCAACCAGC+TGG + chr5_1:26023805-26023824 None:intergenic 50.0%
!! TTTTGGGGGTTGAGGTGAGA+TGG - chr5_1:26023993-26024012 Msa0725920:CDS 50.0%
TTTGGGGGTTGAGGTGAGAT+GGG - chr5_1:26023994-26024013 Msa0725920:CDS 50.0%
!! TTGAGGTGAGATGGGTTGGT+TGG - chr5_1:26024002-26024021 Msa0725920:CDS 50.0%
! GGTGTGCTGGTGACCGTAAA+TGG - chr5_1:26022710-26022729 Msa0725920:three_prime_UTR 55.0%
! GTAGGGTACCCTGCAGAAGA+AGG - chr5_1:26023542-26023561 Msa0725920:intron 55.0%
! AGGGTACCCTGCAGAAGAAG+GGG - chr5_1:26023544-26023563 Msa0725920:intron 55.0%
ACGGAATTGGGCACCAGTGT+AGG + chr5_1:26023830-26023849 None:intergenic 55.0%
! GGTGTGCTGGTGACCGTAAA+TGG - chr5_1:26022710-26022729 Msa0725920:three_prime_UTR 55.0%
! GTAGGGTACCCTGCAGAAGA+AGG - chr5_1:26023542-26023561 Msa0725920:intron 55.0%
! AGGGTACCCTGCAGAAGAAG+GGG - chr5_1:26023544-26023563 Msa0725920:intron 55.0%
ACGGAATTGGGCACCAGTGT+AGG + chr5_1:26023830-26023849 None:intergenic 55.0%
GTACCCTGCAGAAGAAGGGG+AGG - chr5_1:26023547-26023566 Msa0725920:intron 60.0%
TCCAACAATGCTGCCCCAGC+TGG - chr5_1:26023787-26023806 Msa0725920:CDS 60.0%
ACCAGCTGGGGCAGCATTGT+TGG + chr5_1:26023791-26023810 None:intergenic 60.0%
ACAATGCTGCCCCAGCTGGT+TGG - chr5_1:26023791-26023810 Msa0725920:CDS 60.0%
!!! GCCCCAGCTGGTTGGTCTTT+TGG - chr5_1:26023799-26023818 Msa0725920:CDS 60.0%
GGGGTTGAGGTGAGATGGGT+TGG - chr5_1:26023998-26024017 Msa0725920:CDS 60.0%
GTACCCTGCAGAAGAAGGGG+AGG - chr5_1:26023547-26023566 Msa0725920:intron 60.0%
TCCAACAATGCTGCCCCAGC+TGG - chr5_1:26023787-26023806 Msa0725920:CDS 60.0%
ACCAGCTGGGGCAGCATTGT+TGG + chr5_1:26023791-26023810 None:intergenic 60.0%
ACAATGCTGCCCCAGCTGGT+TGG - chr5_1:26023791-26023810 Msa0725920:CDS 60.0%
!!! GCCCCAGCTGGTTGGTCTTT+TGG - chr5_1:26023799-26023818 Msa0725920:CDS 60.0%
GGGGTTGAGGTGAGATGGGT+TGG - chr5_1:26023998-26024017 Msa0725920:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 26022200 26024489 26022200 ID=Msa0725920;Name=Msa0725920
chr5_1 mRNA 26022200 26024489 26022200 ID=Msa0725920-mRNA-1;Parent=Msa0725920;Name=Msa0725920-mRNA-1;_AED=0.06;_eAED=0.06;_QI=164|1|1|1|1|1|3|637|248
chr5_1 exon 26022200 26023143 26022200 ID=Msa0725920-mRNA-1:exon:9329;Parent=Msa0725920-mRNA-1
chr5_1 exon 26023781 26024093 26023781 ID=Msa0725920-mRNA-1:exon:9328;Parent=Msa0725920-mRNA-1
chr5_1 exon 26024199 26024489 26024199 ID=Msa0725920-mRNA-1:exon:9327;Parent=Msa0725920-mRNA-1
chr5_1 five_prime_UTR 26024326 26024489 26024326 ID=Msa0725920-mRNA-1:five_prime_utr;Parent=Msa0725920-mRNA-1
chr5_1 CDS 26024199 26024325 26024199 ID=Msa0725920-mRNA-1:cds;Parent=Msa0725920-mRNA-1
chr5_1 CDS 26023781 26024093 26023781 ID=Msa0725920-mRNA-1:cds;Parent=Msa0725920-mRNA-1
chr5_1 CDS 26022837 26023143 26022837 ID=Msa0725920-mRNA-1:cds;Parent=Msa0725920-mRNA-1
chr5_1 three_prime_UTR 26022200 26022836 26022200 ID=Msa0725920-mRNA-1:three_prime_utr;Parent=Msa0725920-mRNA-1
Gene Sequence

>Msa0725920

ATGGCTCTCATTGGGTTGTTCTTCATGGTGTTTCTCACTATGTTTTCATCTGCTTATGGTTATGGTGGAGGATGGGTTAATGCACATGCAACTTTCTATGGAGGAAGTGATGCATCAGGAACAATGGGTGGTGCATGTGGATATGGAAACCTATACAGTCAAGGTTATGGAACAAACACTGCTGCTTTAAGCACAGCTTTGTTCAACAGTGGTTTGAGCTGTGGTTCTTGCTTTGAGATTAGGTGTGCTGGTGACCGTAAATGGTGTCTTCCTGGCTCTATTTTGGTCACTGCTACTAATTTCTGTCCACCAAACAATGCCTTGCCTAATAACAATGGAGGATGGTGTAACCCTCCTTTGCAACACTTTGATCTTGCTCAACCTGTTTTTCTTAGAATTGCTCAATACAAAGCTGGAATTGTTCCTGTTTCTTACAGAAGGGTACCCTGCAGAAGAAGGGGAGGAATTAGGTTCACAATCAATGGACATTCCTACTTCAACTTAGTTCTAGTAACAAATGTGGGTGGTGCTGGAGATGTACATTCAGTAGCTATTAAAGGGTCAAGAACAGGGTGGATGCCAATGTCTAGAAATTGGGGTCAAAATTGGCAAAGCAACAATTATCTTAATGGCCAAGCTTTGTCTTTCAAGGTTACAACAAGTGATGGCAAAACAGTCATTTCCAACAATGCTGCCCCAGCTGGTTGGTCTTTTGGTCAGACCTACACTGGTGCCCAATTCCGTTAG
Protein sequence

>Msa0725920

MALIGLFFMVFLTMFSSAYGYGGGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGSCFEIRCAGDRKWCLPGSILVTATNFCPPNNALPNNNGGWCNPPLQHFDLAQPVFLRIAQYKAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQALSFKVTTSDGKTVISNNAAPAGWSFGQTYTGAQFR*