AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0761720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0761720 MtrunA17_Chr5g0412061 96.672 601 15 1 1 601 1 596 0.0 1184
Msa0761720 MtrunA17_Chr5g0421541 92.982 171 12 0 423 593 1 171 1.67e-108 323
Msa0761720 MtrunA17_Chr4g0049801 35.025 611 333 16 37 595 13 611 4.85e-94 301
Msa0761720 MtrunA17_Chr2g0279641 35.744 484 253 12 18 446 18 498 2.14e-72 247
Msa0761720 MtrunA17_Chr2g0279641 30.387 362 191 16 276 595 419 761 7.28e-18 87.8
Msa0761720 MtrunA17_Chr3g0140741 29.185 675 356 20 26 601 10 661 1.40e-52 191
Msa0761720 MtrunA17_Chr2g0285771 26.281 605 376 14 44 595 42 629 5.32e-47 174
Msa0761720 MtrunA17_Chr2g0285771 22.561 328 208 8 272 564 34 350 7.43e-11 65.1
Msa0761720 MtrunA17_Chr2g0285771 23.304 339 188 10 43 335 312 624 8.61e-11 65.1
Msa0761720 MtrunA17_Chr4g0002241 33.105 438 228 14 27 449 1 388 2.84e-46 172
Msa0761720 MtrunA17_Chr4g0002241 29.386 228 138 7 8 227 186 398 1.65e-18 89.4
Msa0761720 MtrunA17_Chr4g0002241 44.186 86 46 2 511 595 514 598 3.13e-11 66.2
Msa0761720 MtrunA17_Chr8g0376551 25.354 635 352 14 44 597 40 633 6.20e-45 169
Msa0761720 MtrunA17_Chr3g0127051 25.289 605 376 16 45 599 64 642 2.08e-44 167
Msa0761720 MtrunA17_Chr6g0453421 30.254 433 280 10 30 451 33 454 1.09e-38 150
Msa0761720 MtrunA17_Chr6g0453421 29.016 193 123 4 281 463 48 236 3.52e-17 85.1
Msa0761720 MtrunA17_Chr7g0217681 29.954 434 278 10 34 451 39 462 1.47e-33 135
Msa0761720 MtrunA17_Chr5g0421531 88.000 50 1 1 1 50 1 45 8.55e-24 94.4
Msa0761720 MtrunA17_Chr5g0412011 100.000 47 0 0 555 601 5 51 3.21e-23 92.8
Msa0761720 MtrunA17_Chr4g0071791 33.155 187 104 4 24 201 27 201 2.36e-19 90.9
Msa0761720 MtrunA17_Chr4g0071791 29.439 214 141 5 251 462 16 221 8.06e-14 73.9
Msa0761720 MtrunA17_Chr2g0298721 34.118 170 94 4 41 201 67 227 4.02e-18 87.4
Msa0761720 MtrunA17_Chr2g0298721 29.714 175 120 3 281 453 71 244 4.67e-13 71.6
Msa0761720 MtrunA17_Chr7g0249721 30.516 213 133 5 263 463 83 292 1.37e-15 78.2
Msa0761720 MtrunA17_Chr7g0249721 28.571 196 115 8 44 226 100 283 1.15e-12 69.3
Msa0761720 MtrunA17_Chr7g0274301 28.736 174 111 4 40 209 111 275 2.03e-14 76.3
Msa0761720 MtrunA17_Chr7g0274301 24.438 356 213 11 281 595 116 456 4.13e-14 75.1
Msa0761720 MtrunA17_Chr1g0184511 27.374 179 111 4 40 209 161 329 2.52e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0761720 AT2G22600.1 35.535 636 321 15 31 595 12 629 4.71e-105 330
Msa0761720 AT1G51580.1 31.280 633 329 19 44 600 19 621 4.95e-67 230
Msa0761720 AT1G51580.1 33.333 195 110 6 16 204 248 428 3.66e-19 92.0
Msa0761720 AT5G46190.1 26.677 626 361 17 44 597 44 643 2.79e-47 176
Msa0761720 AT5G46190.1 28.070 171 107 3 43 210 316 473 4.36e-12 69.7
Msa0761720 AT5G46190.4 26.677 626 361 17 44 597 44 643 2.79e-47 176
Msa0761720 AT5G46190.4 28.070 171 107 3 43 210 316 473 4.36e-12 69.7
Msa0761720 AT5G46190.3 26.677 626 361 17 44 597 44 643 2.79e-47 176
Msa0761720 AT5G46190.3 28.070 171 107 3 43 210 316 473 4.36e-12 69.7
Msa0761720 AT5G53060.1 28.690 603 357 20 46 599 70 648 1.07e-46 174
Msa0761720 AT5G15270.3 31.590 478 287 13 46 506 52 506 2.93e-45 168
Msa0761720 AT5G15270.3 33.143 175 107 3 281 447 51 223 1.39e-18 89.7
Msa0761720 AT5G15270.2 31.590 478 287 13 46 506 52 506 4.64e-45 168
Msa0761720 AT5G15270.2 33.143 175 107 3 281 447 51 223 1.74e-18 89.7
Msa0761720 AT5G15270.1 31.590 478 287 13 46 506 52 506 4.64e-45 168
Msa0761720 AT5G15270.1 33.143 175 107 3 281 447 51 223 1.74e-18 89.7
Msa0761720 AT5G46190.2 25.037 671 360 18 44 597 44 688 5.01e-40 155
Msa0761720 AT5G46190.2 28.070 171 107 3 43 210 316 473 6.29e-12 68.9
Msa0761720 AT5G53060.3 29.508 427 258 11 46 444 70 481 6.92e-40 154
Msa0761720 AT5G53060.3 27.566 341 208 12 282 597 70 396 7.18e-13 72.0
Msa0761720 AT4G18375.2 24.430 614 360 19 44 597 36 605 1.41e-36 145
Msa0761720 AT5G09560.1 26.957 460 259 11 44 446 30 469 8.44e-31 127
Msa0761720 AT5G64390.2 37.500 192 102 3 42 219 45 232 1.20e-28 122
Msa0761720 AT5G64390.2 40.556 180 92 3 280 452 452 623 9.60e-28 119
Msa0761720 AT5G64390.2 27.551 196 116 4 22 210 440 616 8.20e-19 91.3
Msa0761720 AT5G64390.3 37.500 192 102 3 42 219 45 232 1.27e-28 122
Msa0761720 AT5G64390.3 40.556 180 92 3 280 452 452 623 1.14e-27 119
Msa0761720 AT5G64390.3 27.551 196 116 4 22 210 440 616 8.36e-19 91.3
Msa0761720 AT5G64390.3 57.143 84 35 1 518 601 776 858 1.04e-16 84.7
Msa0761720 AT5G64390.1 37.500 192 102 3 42 219 45 232 1.37e-28 122
Msa0761720 AT5G64390.1 40.556 180 92 3 280 452 452 623 1.13e-27 119
Msa0761720 AT5G64390.1 27.551 196 116 4 22 210 440 616 9.54e-19 90.9
Msa0761720 AT5G64390.1 56.977 86 36 1 516 601 765 849 3.56e-17 85.9
Msa0761720 AT4G18375.3 24.786 468 276 13 44 461 36 477 2.25e-27 116
Msa0761720 AT1G14170.2 28.365 416 251 11 46 446 13 396 8.17e-26 111
Msa0761720 AT1G14170.1 28.230 418 253 11 46 448 21 406 1.02e-25 110
Msa0761720 AT1G14170.3 28.230 418 253 11 46 448 46 431 1.64e-25 110
Msa0761720 AT4G26000.1 32.941 170 96 4 41 201 71 231 2.23e-18 89.0
Msa0761720 AT4G26000.1 27.733 375 217 14 258 595 50 407 3.64e-16 82.0
Msa0761720 AT3G04610.3 25.989 354 217 12 281 600 164 506 7.90e-13 71.6
Msa0761720 AT3G04610.3 27.841 176 111 4 40 208 159 325 2.90e-12 70.1
Msa0761720 AT3G04610.4 25.989 354 217 12 281 600 164 506 7.90e-13 71.6
Msa0761720 AT3G04610.4 27.841 176 111 4 40 208 159 325 2.90e-12 70.1
Msa0761720 AT3G04610.2 32.530 166 107 4 281 444 188 350 2.26e-12 70.5
Msa0761720 AT3G04610.2 27.841 176 111 4 40 208 183 349 2.30e-12 70.5
Msa0761720 AT3G04610.1 32.530 166 107 4 281 444 188 350 2.26e-12 70.5
Msa0761720 AT3G04610.1 27.841 176 111 4 40 208 183 349 2.30e-12 70.5

Find 184 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAACAGTATCTTTATTTAA+AGG 0.143435 5_2:-19261405 None:intergenic
GACTGATGATAGGGTTATTT+TGG 0.147477 5_2:+19257512 Msa0761720:CDS
GTAAAATCACTTCTATAATT+AGG 0.149460 5_2:+19261328 Msa0761720:CDS
ATAATAGTGGTTCTAATATT+AGG 0.149891 5_2:+19257754 Msa0761720:CDS
CCCAAGTATTTATGGAATTT+TGG 0.152783 5_2:+19263296 Msa0761720:three_prime_UTR
TGATGGGTTGTGATGATTTA+AGG 0.192696 5_2:-19257168 None:intergenic
CTGCAACTCCCAAGTATTTA+TGG 0.200192 5_2:+19263288 Msa0761720:three_prime_UTR
TGTTTCTGGGACCAGATTTC+AGG 0.214487 5_2:+19262631 Msa0761720:intron
CATGTCTTTGGTTCTGTTTA+TGG 0.268455 5_2:+19261965 Msa0761720:CDS
GTGGTGGTGGTTGTGGGTGG+TGG 0.271313 5_2:-19257302 None:intergenic
GCTCCAGTTGTACTGTTAAT+TGG 0.271368 5_2:+19263059 Msa0761720:three_prime_UTR
GGTGGGTTGATCGGAAGTTC+AGG 0.287245 5_2:+19257423 Msa0761720:CDS
ATTGTCTTTGCCCCTCCTTT+AGG 0.294721 5_2:+19259775 Msa0761720:CDS
TCCACTTGTACCGGTGCTGC+TGG 0.296182 5_2:-19262677 None:intergenic
TAAAATCACTTCTATAATTA+GGG 0.310912 5_2:+19261329 Msa0761720:CDS
GGAGGGAAGGTTGTGATATC+TGG 0.316287 5_2:+19262697 Msa0761720:CDS
TTGGCACATAGTTCTCAAAT+TGG 0.322433 5_2:+19257687 Msa0761720:CDS
TAATAGTGGTTCTAATATTA+GGG 0.324572 5_2:+19257755 Msa0761720:CDS
ATGCACAAGAAGGTGTTGTT+AGG 0.326843 5_2:+19257598 Msa0761720:CDS
ATTAAAAGCCTCGCAGTTAC+AGG 0.344522 5_2:-19260027 None:intergenic
TAATTCATGGTTACCTTCAA+TGG 0.351322 5_2:+19259567 Msa0761720:CDS
TTGAAGGTAACCATGAATTA+AGG 0.351702 5_2:-19259564 None:intergenic
GGAAGAATATAAGTAATATT+AGG 0.355385 5_2:+19257730 Msa0761720:CDS
CGGTGGTTGGGACTGATGAT+AGG 0.355410 5_2:+19257502 Msa0761720:CDS
ATAGTCTCAGAGCATGTCTT+TGG 0.359338 5_2:+19261953 Msa0761720:CDS
TTCAACGGCGGCGGAGAAAG+TGG 0.361395 5_2:-19257268 None:intergenic
TTTGTTGAAGTTAACGTTGA+TGG 0.362624 5_2:-19257185 None:intergenic
TGGTGAAAAGGAGATTTGTT+TGG 0.364184 5_2:-19257137 None:intergenic
GGATCGAAAAGGGATTGTTT+TGG 0.364192 5_2:+19257551 Msa0761720:CDS
CTCAAATTGGTGCTATTGTT+GGG 0.364258 5_2:+19257700 Msa0761720:CDS
ATAGATAAACCTTCCATTGA+AGG 0.366335 5_2:-19259580 None:intergenic
CTTTAAATAAAGATACTGTT+AGG 0.366560 5_2:+19261406 Msa0761720:CDS
TGCTTCAGCAAGCACCTCAT+TGG 0.367887 5_2:-19261364 None:intergenic
TAAAGTTCTTCCTTCAAAAC+AGG 0.372152 5_2:+19262828 Msa0761720:three_prime_UTR
GGTGAAAAGGAGATTTGTTT+GGG 0.372821 5_2:-19257136 None:intergenic
GGGGAAATGGTGAAGTTTAT+GGG 0.388390 5_2:+19257658 Msa0761720:CDS
TTAGTGTTATTCTGTGTGTT+TGG 0.388479 5_2:-19257042 None:intergenic
TTATCTGAAGCATTAGGAAT+TGG 0.392353 5_2:-19260150 None:intergenic
TTGTTTGATTGACAGATAAC+TGG 0.399123 5_2:+19259391 Msa0761720:intron
TTCACTTCAAAATGATATGA+TGG 0.402197 5_2:+19262942 Msa0761720:three_prime_UTR
ATAGAGTGAGAAAGTTGAAA+TGG 0.403621 5_2:-19257101 None:intergenic
ACAGATAACTGGTGAAAGTT+TGG 0.406589 5_2:+19259402 Msa0761720:intron
TCTGAAAACAACTGCGTGTC+CGG 0.412088 5_2:-19259665 None:intergenic
TCTCAAATTGGTGCTATTGT+TGG 0.413714 5_2:+19257699 Msa0761720:CDS
CTCGATGTGAAGGTGGGTAT+TGG 0.414006 5_2:+19263223 Msa0761720:three_prime_UTR
GCCAAAATTCCATAAATACT+TGG 0.414336 5_2:-19263297 None:intergenic
AGCATTGACTCAAAAGGTTC+CGG 0.414704 5_2:+19259646 Msa0761720:CDS
CAGGAGAATTACTTGATTCA+AGG 0.415861 5_2:-19259918 None:intergenic
GTACCAATTAACAGTACAAC+TGG 0.416674 5_2:-19263062 None:intergenic
AGACAATAGAAGCACCAGTT+TGG 0.418301 5_2:-19259759 None:intergenic
AAAGTTGAAATGGAATGAAA+AGG 0.421641 5_2:-19257091 None:intergenic
GTGGTGGTGGTGGTTGTGGG+TGG 0.422185 5_2:-19257305 None:intergenic
AGCTAAAAGAGCGGAGGAAA+AGG 0.423333 5_2:-19263122 None:intergenic
TTTGGATTGATACATTTGTT+GGG 0.424046 5_2:+19263263 Msa0761720:three_prime_UTR
TGAATTGTTAAGGGTTGAAA+TGG 0.427611 5_2:-19263382 None:intergenic
ACTGCGAGGATGCGGTGGTT+GGG 0.428519 5_2:+19257490 Msa0761720:CDS
ATATGTACACCAACCACTAA+TGG 0.431634 5_2:-19262859 None:intergenic
CTTGTATATTTGCAGAATGC+AGG 0.433629 5_2:+19261577 Msa0761720:intron
TGCACTATGTGAAATTTGAT+TGG 0.435236 5_2:+19263324 Msa0761720:three_prime_UTR
TCTCAGCTCCGGCGAGAAAC+CGG 0.437451 5_2:+19257456 Msa0761720:CDS
GCTGAAGATCACATTCGAAA+TGG 0.439609 5_2:+19259976 Msa0761720:CDS
AAGATCCTCATGTGTGTAAG+AGG 0.441328 5_2:-19259533 None:intergenic
GCTTCAGCAAGCACCTCATT+GGG 0.447960 5_2:-19261363 None:intergenic
ACATCATTATCTGAAGCATT+AGG 0.450838 5_2:-19260156 None:intergenic
AAAAGGGTATTGTGAAGGAT+TGG 0.450912 5_2:-19257074 None:intergenic
AGGGGTGTATCAAACTAAAA+AGG 0.457022 5_2:+19261597 Msa0761720:CDS
CACTGCGAGGATGCGGTGGT+TGG 0.458500 5_2:+19257489 Msa0761720:CDS
CATTTATTGACTGGTAATGA+AGG 0.460032 5_2:+19260066 Msa0761720:CDS
GGGTCGATGTCGGATCGAAA+AGG 0.463768 5_2:+19257540 Msa0761720:CDS
CGCTCTTCATACTGACCTAA+AGG 0.469766 5_2:-19259790 None:intergenic
ATTGACTGGTAATGAAGGTC+AGG 0.471664 5_2:+19260071 Msa0761720:CDS
CACCACCGTCGTCGTTGAAA+CGG 0.472880 5_2:+19257322 Msa0761720:CDS
AAGTTGAAATGGAATGAAAA+GGG 0.475503 5_2:-19257090 None:intergenic
TCTTTATTTAAAGGAAAACT+TGG 0.475566 5_2:-19261396 None:intergenic
GTCTGTCATTCGTCAACGGT+TGG 0.480419 5_2:+19257402 Msa0761720:CDS
ACAGGAGGAGGTGCCATTAG+TGG 0.480446 5_2:+19262846 Msa0761720:three_prime_UTR
GGTTCTGTTTATGGTGAAGA+TGG 0.482448 5_2:+19261974 Msa0761720:CDS
AAATGTGTCTGTTAGTCTAC+AGG 0.484540 5_2:-19262971 None:intergenic
TCAACGGCGGCGGAGAAAGT+GGG 0.487788 5_2:-19257267 None:intergenic
CAACTATTAACTCGTCTGAT+AGG 0.488380 5_2:+19259506 Msa0761720:CDS
AGTAATATTAGGAATAATAG+TGG 0.489092 5_2:+19257741 Msa0761720:CDS
GGTCGATGTCGGATCGAAAA+GGG 0.489118 5_2:+19257541 Msa0761720:CDS
TGCACAAGAAGGTGTTGTTA+GGG 0.491683 5_2:+19257599 Msa0761720:CDS
GTGCTATTGTTGGGAAAGGA+GGG 0.492024 5_2:+19257709 Msa0761720:CDS
ACCCGGTAGAAGTTTGAAAA+CGG 0.492942 5_2:-19257361 None:intergenic
CCCGGTAGAAGTTTGAAAAC+GGG 0.493933 5_2:-19257360 None:intergenic
GTCATTCGTCAACGGTTGGT+GGG 0.494900 5_2:+19257406 Msa0761720:CDS
TCAACGGTTGGTGGGTTGAT+CGG 0.497535 5_2:+19257414 Msa0761720:CDS
AACTCTAGCATTGACTCAAA+AGG 0.499637 5_2:+19259640 Msa0761720:CDS
GGTGCTATTGTTGGGAAAGG+AGG 0.500865 5_2:+19257708 Msa0761720:CDS
AGCACGTTACATTTATTGAC+TGG 0.502822 5_2:+19260057 Msa0761720:CDS
TGAGCTGCAAATGTTTGATC+AGG 0.504272 5_2:-19262724 None:intergenic
TTGTGGGTGGTGGTGATCAG+TGG 0.505493 5_2:-19257292 None:intergenic
CCACTTGTACCGGTGCTGCT+GGG 0.508804 5_2:-19262676 None:intergenic
CTAGTTCGCGCTCGATGTGA+AGG 0.509642 5_2:+19263213 Msa0761720:three_prime_UTR
TGTGGTAGAAACCTCGCAAA+AGG 0.510464 5_2:-19261462 None:intergenic
TTCAACGACGACGGTGGTGG+TGG 0.510744 5_2:-19257318 None:intergenic
GGTGATTCCACAGCAGTAGC+TGG 0.515008 5_2:-19260006 None:intergenic
GCAAGCACCTCATTGGGTAA+AGG 0.515760 5_2:-19261357 None:intergenic
CAATTTAGATCGAATTAGAC+AGG 0.516065 5_2:+19262000 Msa0761720:CDS
TTGTTGAAGTTAACGTTGAT+GGG 0.518113 5_2:-19257184 None:intergenic
AAACGAAACGCGATCTGACC+CGG 0.520534 5_2:-19257378 None:intergenic
AACCTCGCAAAAGGAAAAGA+AGG 0.524946 5_2:-19261453 None:intergenic
TCTTCAAGATTGTCCACCGA+TGG 0.525660 5_2:+19259459 Msa0761720:CDS
AACGACGACGGTGGTGGTGG+TGG 0.525846 5_2:-19257315 None:intergenic
TTGTATATTTGCAGAATGCA+GGG 0.526025 5_2:+19261578 Msa0761720:intron
CAAAATCCACTGCGAGGATG+CGG 0.528018 5_2:+19257482 Msa0761720:CDS
GGTCAATCGTTTCTCAGCTC+CGG 0.528256 5_2:+19257445 Msa0761720:CDS
CTTTGCTCTAACAACGTAGC+TGG 0.528580 5_2:+19259691 Msa0761720:CDS
AGATAATGATGTGGTAGTCC+AGG 0.528924 5_2:+19260167 Msa0761720:CDS
TCATGGTTACCTTCAATGGA+AGG 0.529880 5_2:+19259571 Msa0761720:CDS
AGCAGCACCGGTACAAGTGG+AGG 0.530406 5_2:+19262679 Msa0761720:CDS
TTTGGGTGATAGGGAAATGG+AGG 0.531899 5_2:+19257569 Msa0761720:CDS
TGAAGTTTATGGGAAATTGT+TGG 0.532182 5_2:+19257668 Msa0761720:CDS
TAATATTATTCACAAGTTGA+AGG 0.532533 5_2:-19262901 None:intergenic
TGTCATTCGTCAACGGTTGG+TGG 0.532975 5_2:+19257405 Msa0761720:CDS
AACCTTCCCTCCACTTGTAC+CGG 0.534868 5_2:-19262686 None:intergenic
AGATATTTCATGCAGATCAC+TGG 0.535144 5_2:+19261276 Msa0761720:intron
TCGAGAATGTGGAACCTGGC+AGG 0.535373 5_2:+19261653 Msa0761720:CDS
CGTTTCAACGACGACGGTGG+TGG 0.539720 5_2:-19257321 None:intergenic
ATCAGTGGTTTCAACGGCGG+CGG 0.541422 5_2:-19257277 None:intergenic
CCAAAATTCCATAAATACTT+GGG 0.543256 5_2:-19263296 None:intergenic
CAGAATTGAGAGAAGTGAGT+GGG 0.546377 5_2:+19260100 Msa0761720:CDS
TTTGGTAATTGGGTCGATGT+CGG 0.546404 5_2:+19257530 Msa0761720:CDS
GGATAATCCTTTACCCAATG+AGG 0.546589 5_2:+19261350 Msa0761720:CDS
AAACTGCACAAGCAAGCTGA+TGG 0.546668 5_2:+19262770 Msa0761720:CDS
TCTTCCTTCAAAACAGGAGG+AGG 0.549693 5_2:+19262834 Msa0761720:three_prime_UTR
CCCAGCAGCACCGGTACAAG+TGG 0.551623 5_2:+19262676 Msa0761720:CDS
GTGGGTTGATCGGAAGTTCA+GGG 0.553203 5_2:+19257424 Msa0761720:CDS
ATTGGTGCTATTGTTGGGAA+AGG 0.556516 5_2:+19257705 Msa0761720:CDS
CTTCAAGATTGTCCACCGAT+GGG 0.558317 5_2:+19259460 Msa0761720:CDS
TTCGCGCTCGATGTGAAGGT+GGG 0.560621 5_2:+19263217 Msa0761720:three_prime_UTR
TTAGCAGCACAATGTGGAGC+AGG 0.560665 5_2:-19257783 None:intergenic
AACGTAGCTGGTAGTGTGAT+CGG 0.561462 5_2:+19259703 Msa0761720:CDS
AGTTCTTCCTTCAAAACAGG+AGG 0.563223 5_2:+19262831 Msa0761720:three_prime_UTR
AGAATAACAGCATCTTGTGC+AGG 0.563491 5_2:-19259937 None:intergenic
TTCAAAGATACTTTGCCCAT+CGG 0.567264 5_2:-19259475 None:intergenic
CTATCAGACGAGTTAATAGT+TGG 0.568402 5_2:-19259505 None:intergenic
AAAGATACTTTGCCCATCGG+TGG 0.569779 5_2:-19259472 None:intergenic
CTGGATTATACTGACCTGCC+AGG 0.574862 5_2:-19261667 None:intergenic
TGCACAAGCAAGCTGATGGA+TGG 0.576534 5_2:+19262774 Msa0761720:exon
CACCGGTACAAGTGGAGGGA+AGG 0.577288 5_2:+19262684 Msa0761720:CDS
TTTAGTCTGTCATTCGTCAA+CGG 0.580422 5_2:+19257398 Msa0761720:CDS
GGGGCTTGAAAGTGAGAAAG+GGG 0.582131 5_2:+19257638 Msa0761720:CDS
GTGGTGATCAGTGGTTTCAA+CGG 0.585651 5_2:-19257283 None:intergenic
GGTGGTTGGGACTGATGATA+GGG 0.586312 5_2:+19257503 Msa0761720:CDS
TTAATCGAGAATGTGGAACC+TGG 0.593430 5_2:+19261649 Msa0761720:CDS
CAAGCAAGCTGATGGATGGA+TGG 0.593818 5_2:+19262778 Msa0761720:exon
GAATGAAAAGGGTATTGTGA+AGG 0.597424 5_2:-19257079 None:intergenic
TCAGACGAGTTAATAGTTGG+TGG 0.600448 5_2:-19259502 None:intergenic
TATTTCATGCAGATCACTGG+TGG 0.600462 5_2:+19261279 Msa0761720:intron
AATCCACTGCGAGGATGCGG+TGG 0.602490 5_2:+19257485 Msa0761720:CDS
CTTCATACTGACCTAAAGGA+GGG 0.604930 5_2:-19259786 None:intergenic
CAACGGCGGCGGAGAAAGTG+GGG 0.607389 5_2:-19257266 None:intergenic
GCAGCACCGGTACAAGTGGA+GGG 0.608583 5_2:+19262680 Msa0761720:CDS
AAACAGACAACAAACGCTAA+CGG 0.610851 5_2:+19259616 Msa0761720:CDS
GCTGATATTCAACTACTGCA+TGG 0.611060 5_2:+19260123 Msa0761720:CDS
GAGGAGGTGCCATTAGTGGT+TGG 0.618086 5_2:+19262850 Msa0761720:three_prime_UTR
GAGGTTTCTAATGCACAAGA+AGG 0.618108 5_2:+19257588 Msa0761720:CDS
TTCATACTGACCTAAAGGAG+GGG 0.624269 5_2:-19259785 None:intergenic
TCTTCATACTGACCTAAAGG+AGG 0.626783 5_2:-19259787 None:intergenic
GTATTTGATCCCAGCAGCAC+CGG 0.627371 5_2:+19262667 Msa0761720:CDS
CAACCACCGCATCCTCGCAG+TGG 0.627904 5_2:-19257488 None:intergenic
ATCACTAGCTAAAAGAGCGG+AGG 0.630537 5_2:-19263128 None:intergenic
TTGTTCCGTTTCAACGACGA+CGG 0.631881 5_2:-19257327 None:intergenic
TTCCGTTTCAACGACGACGG+TGG 0.641928 5_2:-19257324 None:intergenic
GTGATCAGTGGTTTCAACGG+CGG 0.644192 5_2:-19257280 None:intergenic
CACAGTAGTGTTTGTCACAG+TGG 0.644717 5_2:-19261924 None:intergenic
GTCAACCTCTTACACACATG+AGG 0.644733 5_2:+19259528 Msa0761720:CDS
TGTATATTTGCAGAATGCAG+GGG 0.651347 5_2:+19261579 Msa0761720:intron
GGTAACCATGAATTAAGGTG+AGG 0.652162 5_2:-19259559 None:intergenic
ACATTGTGCTGCTAAAGATG+AGG 0.653944 5_2:+19257791 Msa0761720:CDS
ATTTCAGCCAGCTACTGCTG+TGG 0.660389 5_2:+19259999 Msa0761720:CDS
TGTGTCTGTTAGTCTACAGG+AGG 0.667705 5_2:-19262968 None:intergenic
TCTGTTTATGGTGAAGATGG+CGG 0.667726 5_2:+19261977 Msa0761720:CDS
TCAGAATTGAGAGAAGTGAG+TGG 0.669570 5_2:+19260099 Msa0761720:CDS
AATATCACTAGCTAAAAGAG+CGG 0.671697 5_2:-19263131 None:intergenic
AGAATTGAGAGAAGTGAGTG+GGG 0.684487 5_2:+19260101 Msa0761720:CDS
TCATCTTTAGCAGCACAATG+TGG 0.684738 5_2:-19257789 None:intergenic
TAATGCTTCAGATAATGATG+TGG 0.688915 5_2:+19260158 Msa0761720:CDS
GGGCTTGAAAGTGAGAAAGG+GGG 0.707750 5_2:+19257639 Msa0761720:CDS
CGGATGCAAAATCCACTGCG+AGG 0.717160 5_2:+19257476 Msa0761720:CDS
CACTGTGACAAACACTACTG+TGG 0.721006 5_2:+19261925 Msa0761720:CDS
TGGAATCACCTGTAACTGCG+AGG 0.722241 5_2:+19260019 Msa0761720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATTAATTAATCATTAAT+AGG + chr5_2:19257841-19257860 Msa0761720:intron 10.0%
!!! TTTTTCATACATAATTTTTA+AGG - chr5_2:19258030-19258049 None:intergenic 10.0%
!! TTAAAAATTATGTATGAAAA+AGG + chr5_2:19258029-19258048 Msa0761720:intron 10.0%
!! TTATTACTATTATTCTTATT+AGG + chr5_2:19258119-19258138 Msa0761720:intron 10.0%
!! AGATATATTAAATGATTTAA+AGG - chr5_2:19258591-19258610 None:intergenic 10.0%
!! TATTATTATTATGAGAAATT+TGG + chr5_2:19259020-19259039 Msa0761720:intron 10.0%
!! ATTATTATTATGAGAAATTT+GGG + chr5_2:19259021-19259040 Msa0761720:intron 10.0%
!!! AAGTATTATGTTTTTATTAA+TGG + chr5_2:19259079-19259098 Msa0761720:intron 10.0%
!!! GTTTTTTTTTTTTTTTTTCA+AGG + chr5_2:19260226-19260245 Msa0761720:intron 10.0%
!! ATGATTAATTAATAAGCAAA+AGG - chr5_2:19257837-19257856 None:intergenic 15.0%
!!! AAATATTTAGAGATATTTTG+TGG + chr5_2:19258000-19258019 Msa0761720:intron 15.0%
!! AGATCAATAATAGAAAATTA+TGG - chr5_2:19259876-19259895 None:intergenic 15.0%
!!! AAATGTACATAAATTGTTTT+CGG - chr5_2:19260607-19260626 None:intergenic 15.0%
!!! TACTTTTAAGTATTTTATTG+AGG - chr5_2:19260706-19260725 None:intergenic 15.0%
!! TAAAATCACTTCTATAATTA+GGG + chr5_2:19261329-19261348 Msa0761720:CDS 15.0%
!! TACATAAAATAATATATTGC+TGG + chr5_2:19261802-19261821 Msa0761720:intron 15.0%
!!! AGTGATAATGATTTTAATTA+AGG + chr5_2:19262147-19262166 Msa0761720:intron 15.0%
!! AATTAAGGTAGAAAAAAAAA+AGG + chr5_2:19262162-19262181 Msa0761720:intron 15.0%
!!! ATCTGCATTTTTTTATTAAA+CGG - chr5_2:19262362-19262381 None:intergenic 15.0%
!! ATAATACTAATACAAATGAA+AGG + chr5_2:19262398-19262417 Msa0761720:intron 15.0%
!!! TAGATTATATTTGTTGTATA+TGG + chr5_2:19262448-19262467 Msa0761720:intron 15.0%
!!! CTCAATTTTTTATTTGTATA+AGG + chr5_2:19262558-19262577 Msa0761720:intron 15.0%
!!! TTTTATTTGTATAAGGATTA+TGG + chr5_2:19262565-19262584 Msa0761720:intron 15.0%
!! GGAAGAATATAAGTAATATT+AGG + chr5_2:19257730-19257749 Msa0761720:CDS 20.0%
!! AGTAATATTAGGAATAATAG+TGG + chr5_2:19257741-19257760 Msa0761720:CDS 20.0%
!!! ATAATAGTGGTTCTAATATT+AGG + chr5_2:19257754-19257773 Msa0761720:CDS 20.0%
!!! TAATAGTGGTTCTAATATTA+GGG + chr5_2:19257755-19257774 Msa0761720:CDS 20.0%
!! TATCTCTAAATATTTACTAG+TGG - chr5_2:19257995-19258014 None:intergenic 20.0%
!! GATTGTAAAATAGATTTACA+CGG + chr5_2:19258262-19258281 Msa0761720:intron 20.0%
!! TTTGAGGAAAAATAAAATCA+GGG - chr5_2:19258415-19258434 None:intergenic 20.0%
!!! TATTTTGAAATCGATAGTAT+CGG - chr5_2:19258484-19258503 None:intergenic 20.0%
!!! TATATCTATGATTTGTTATG+CGG + chr5_2:19258604-19258623 Msa0761720:intron 20.0%
!!! ATATTTTTTTCCTCAATTGT+TGG + chr5_2:19258650-19258669 Msa0761720:intron 20.0%
!!! AATTTTCAATCTTAACCAAA+AGG - chr5_2:19258684-19258703 None:intergenic 20.0%
!! AGAAAAATCAATAAAATGTG+CGG - chr5_2:19258756-19258775 None:intergenic 20.0%
!! ATTGGTTATCATTTGTATTA+GGG + chr5_2:19258799-19258818 Msa0761720:intron 20.0%
!! AATAAAATGCACAAAATTTG+AGG + chr5_2:19258921-19258940 Msa0761720:intron 20.0%
!! TGTATGTTATAAAAGTGAAT+TGG + chr5_2:19259159-19259178 Msa0761720:intron 20.0%
!!! TGAATTGGAACTTTAATTTT+GGG + chr5_2:19259174-19259193 Msa0761720:intron 20.0%
!! TAATATTCTTGTTCTTTATC+TGG + chr5_2:19259364-19259383 Msa0761720:intron 20.0%
!! AATATTCTTGTTCTTTATCT+GGG + chr5_2:19259365-19259384 Msa0761720:intron 20.0%
!! TTGCTTAATTTCCAATTTAA+AGG + chr5_2:19260360-19260379 Msa0761720:intron 20.0%
!! CATATTAAAGACCTTTAAAT+TGG - chr5_2:19260374-19260393 None:intergenic 20.0%
!! CAATTTAAAGGTCTTTAATA+TGG + chr5_2:19260372-19260391 Msa0761720:intron 20.0%
!! GAAATATATTTGTGTAAGTT+AGG - chr5_2:19260434-19260453 None:intergenic 20.0%
!! AACTTACACAAATATATTTC+AGG + chr5_2:19260434-19260453 Msa0761720:intron 20.0%
!! GTAAAATCACTTCTATAATT+AGG + chr5_2:19261328-19261347 Msa0761720:CDS 20.0%
!!! TCTTTATTTAAAGGAAAACT+TGG - chr5_2:19261399-19261418 None:intergenic 20.0%
!!! CTAACAGTATCTTTATTTAA+AGG - chr5_2:19261408-19261427 None:intergenic 20.0%
!! CTTTAAATAAAGATACTGTT+AGG + chr5_2:19261406-19261425 Msa0761720:CDS 20.0%
!! AAAGATGGTTAAAATAAAGA+AGG - chr5_2:19261499-19261518 None:intergenic 20.0%
!! TGTAATAGAATATCAAAAGA+TGG - chr5_2:19261514-19261533 None:intergenic 20.0%
!!! TTCTCGATTAAATTTTTATG+TGG - chr5_2:19261640-19261659 None:intergenic 20.0%
!! TAAAAATTTAATCGAGAATG+TGG + chr5_2:19261642-19261661 Msa0761720:CDS 20.0%
!!! TTTTTTCAATCTTTCTCTTT+TGG + chr5_2:19261871-19261890 Msa0761720:intron 20.0%
!! TAAACTTTCTTCTGATTATT+TGG + chr5_2:19262089-19262108 Msa0761720:intron 20.0%
!! AAACGGTTTAAACATAAAAA+GGG - chr5_2:19262345-19262364 None:intergenic 20.0%
!! TAAACGGTTTAAACATAAAA+AGG - chr5_2:19262346-19262365 None:intergenic 20.0%
!!! TATTTGTTGTATATGGATTA+TGG + chr5_2:19262455-19262474 Msa0761720:intron 20.0%
!!! TAATATTATTCACAAGTTGA+AGG - chr5_2:19262904-19262923 None:intergenic 20.0%
!!! AAGGATGAACTTTTATAAAT+AGG - chr5_2:19263106-19263125 None:intergenic 20.0%
! AAGTTGAAATGGAATGAAAA+GGG - chr5_2:19257093-19257112 None:intergenic 25.0%
! AAAGTTGAAATGGAATGAAA+AGG - chr5_2:19257094-19257113 None:intergenic 25.0%
!! GATGATTTAAGGAATTTTCA+TGG - chr5_2:19257160-19257179 None:intergenic 25.0%
!!! AAGTTTGTGACTTTTGAAAT+GGG - chr5_2:19257219-19257238 None:intergenic 25.0%
!!! AAAGTTTGTGACTTTTGAAA+TGG - chr5_2:19257220-19257239 None:intergenic 25.0%
!!! ATAGGGTTATTTTGGTAATT+GGG + chr5_2:19257520-19257539 Msa0761720:CDS 25.0%
! TCTAAATATTTACTAGTGGT+CGG - chr5_2:19257991-19258010 None:intergenic 25.0%
! ACTATTATTCTTATTAGGCA+CGG + chr5_2:19258124-19258143 Msa0761720:intron 25.0%
! ACATGAAATTCAATGATAGA+TGG + chr5_2:19258285-19258304 Msa0761720:intron 25.0%
! CTTCGAAATGCAAAATATAT+AGG - chr5_2:19258391-19258410 None:intergenic 25.0%
! TTGAGGAAAAATAAAATCAG+GGG - chr5_2:19258414-19258433 None:intergenic 25.0%
!! CTTTGAGGAAAAATAAAATC+AGG - chr5_2:19258416-19258435 None:intergenic 25.0%
!!! TCAAACTTTTGATTTCTTTG+AGG - chr5_2:19258431-19258450 None:intergenic 25.0%
! TCAAAATACATTCGTAAAAG+TGG + chr5_2:19258496-19258515 Msa0761720:intron 25.0%
! CTTATAAAAGTCCTTAAGAA+AGG + chr5_2:19258774-19258793 Msa0761720:intron 25.0%
!! GATTGGTTATCATTTGTATT+AGG + chr5_2:19258798-19258817 Msa0761720:intron 25.0%
! CAACAAAAAGTTACTATGTT+GGG - chr5_2:19258863-19258882 None:intergenic 25.0%
!! ATTATGAGAAATTTGGGATA+AGG + chr5_2:19259027-19259046 Msa0761720:intron 25.0%
!!! CTTGTTTTCTTCCTATATTT+TGG + chr5_2:19259118-19259137 Msa0761720:intron 25.0%
!! TGATTTTCATGCCAAAATAT+AGG - chr5_2:19259132-19259151 None:intergenic 25.0%
!!! TCACTTTTATAACATACACA+TGG - chr5_2:19259157-19259176 None:intergenic 25.0%
!!! GTGAATTGGAACTTTAATTT+TGG + chr5_2:19259173-19259192 Msa0761720:intron 25.0%
!!! AACTTTAATTTTGGGATTGT+AGG + chr5_2:19259182-19259201 Msa0761720:intron 25.0%
! ATAAATTAGAATGAGGAAAC+TGG + chr5_2:19259220-19259239 Msa0761720:intron 25.0%
! GTTAAATCAGTATAGACATT+CGG - chr5_2:19259284-19259303 None:intergenic 25.0%
! GCAGTTCTTGAAAATATATT+TGG - chr5_2:19259306-19259325 None:intergenic 25.0%
! TCAGTTCAATGATAAGTAAA+AGG - chr5_2:19259339-19259358 None:intergenic 25.0%
!! AAGTTATCCTTTTATCATGA+AGG - chr5_2:19260333-19260352 None:intergenic 25.0%
! GGAAAACAGTTAATTATACT+TGG + chr5_2:19260393-19260412 Msa0761720:intron 25.0%
!!! TTTATTTTCATAAGCTTTCC+AGG - chr5_2:19260584-19260603 None:intergenic 25.0%
!! TATTTTATTGAGGATCTGTT+TGG - chr5_2:19260696-19260715 None:intergenic 25.0%
! ATACAGAAGCAGATATAATA+AGG - chr5_2:19260827-19260846 None:intergenic 25.0%
! ATTTACATTCTTAACTAAGC+TGG - chr5_2:19260874-19260893 None:intergenic 25.0%
!! AATAAGTTGAAAACAACGTA+TGG + chr5_2:19261121-19261140 Msa0761720:intron 25.0%
! AAACAGTAAGAAAAGATTGT+TGG - chr5_2:19261233-19261252 None:intergenic 25.0%
! CTTCTACATCTAATAATTAC+AGG - chr5_2:19261753-19261772 None:intergenic 25.0%
! GTGAATATTTATTATGCCAT+TGG - chr5_2:19261776-19261795 None:intergenic 25.0%
!! TCTCTTTTGGTAAAATCTTT+TGG + chr5_2:19261884-19261903 Msa0761720:intron 25.0%
! AATTCATGTCATCTTTCTAA+GGG - chr5_2:19262042-19262061 None:intergenic 25.0%
! TAATTCATGTCATCTTTCTA+AGG - chr5_2:19262043-19262062 None:intergenic 25.0%
!!! ATGAATTATTTAATTTGCCG+TGG + chr5_2:19262055-19262074 Msa0761720:intron 25.0%
! TTTGAATCATTTGATCATTG+TGG + chr5_2:19262117-19262136 Msa0761720:intron 25.0%
! TACTGTAACTCCAAAAAATT+AGG + chr5_2:19262236-19262255 Msa0761720:intron 25.0%
! ACTGTAACTCCAAAAAATTA+GGG + chr5_2:19262237-19262256 Msa0761720:intron 25.0%
!!! GCTAAAATTCCCTAATTTTT+TGG - chr5_2:19262249-19262268 None:intergenic 25.0%
! GAAAGTCTAAACTTTGATAA+TGG - chr5_2:19262300-19262319 None:intergenic 25.0%
! TTCACTTCAAAATGATATGA+TGG + chr5_2:19262942-19262961 Msa0761720:three_prime_UTR 25.0%
!! AGACACATTTTGTTAGATTT+CGG + chr5_2:19262984-19263003 Msa0761720:three_prime_UTR 25.0%
!! ATTTTATTAACTGTCTCTCT+TGG + chr5_2:19263015-19263034 Msa0761720:three_prime_UTR 25.0%
!! TTTTATTAACTGTCTCTCTT+GGG + chr5_2:19263016-19263035 Msa0761720:three_prime_UTR 25.0%
!! TCTTGGGATATTTTATTAAC+AGG + chr5_2:19263032-19263051 Msa0761720:three_prime_UTR 25.0%
!! GAACTTTTATAAATAGGTCT+TGG - chr5_2:19263100-19263119 None:intergenic 25.0%
!!! GAGTTTTATTTTGAGTCTTT+TGG + chr5_2:19263245-19263264 Msa0761720:three_prime_UTR 25.0%
!! TTTTGGATTGATACATTTGT+TGG + chr5_2:19263262-19263281 Msa0761720:three_prime_UTR 25.0%
! TTTGGATTGATACATTTGTT+GGG + chr5_2:19263263-19263282 Msa0761720:three_prime_UTR 25.0%
! CCAAAATTCCATAAATACTT+GGG - chr5_2:19263299-19263318 None:intergenic 25.0%
! TTAGTGTTATTCTGTGTGTT+TGG - chr5_2:19257045-19257064 None:intergenic 30.0%
ATAGAGTGAGAAAGTTGAAA+TGG - chr5_2:19257104-19257123 None:intergenic 30.0%
! AAGGAATTTTCATGGTGAAA+AGG - chr5_2:19257152-19257171 None:intergenic 30.0%
TTGTTGAAGTTAACGTTGAT+GGG - chr5_2:19257187-19257206 None:intergenic 30.0%
TTTGTTGAAGTTAACGTTGA+TGG - chr5_2:19257188-19257207 None:intergenic 30.0%
!!! GATAGGGTTATTTTGGTAAT+TGG + chr5_2:19257519-19257538 Msa0761720:CDS 30.0%
! TGTTGTTAGGGTTTTTGATA+GGG + chr5_2:19257611-19257630 Msa0761720:CDS 30.0%
TGAAGTTTATGGGAAATTGT+TGG + chr5_2:19257668-19257687 Msa0761720:CDS 30.0%
!! AACTCAACTGGTTTGATTTA+AGG - chr5_2:19257966-19257985 None:intergenic 30.0%
CTAAATATTTACTAGTGGTC+GGG - chr5_2:19257990-19258009 None:intergenic 30.0%
AATCAAAAGTTTGAACCCTT+TGG + chr5_2:19258437-19258456 Msa0761720:intron 30.0%
ATCAAAAGTTTGAACCCTTT+GGG + chr5_2:19258438-19258457 Msa0761720:intron 30.0%
! TTGTTGGAATTCTTTCCTTT+TGG + chr5_2:19258666-19258685 Msa0761720:intron 30.0%
ATAACCAATCTCCTTTCTTA+AGG - chr5_2:19258788-19258807 None:intergenic 30.0%
AATGTTAACTTATGCCCTTA+AGG + chr5_2:19258823-19258842 Msa0761720:intron 30.0%
TTCCTTATCTTATGCCTTAA+GGG - chr5_2:19258840-19258859 None:intergenic 30.0%
CCAACAAAAAGTTACTATGT+TGG - chr5_2:19258864-19258883 None:intergenic 30.0%
! CCAACATAGTAACTTTTTGT+TGG + chr5_2:19258861-19258880 Msa0761720:intron 30.0%
AAGGATTCATTCATACTAAG+TGG + chr5_2:19259046-19259065 Msa0761720:intron 30.0%
CCTCATTCTAATTTATCACA+CGG - chr5_2:19259216-19259235 None:intergenic 30.0%
ATGACAGATCAGATTTAATC+TGG - chr5_2:19259257-19259276 None:intergenic 30.0%
TTGTTTGATTGACAGATAAC+TGG + chr5_2:19259391-19259410 Msa0761720:intron 30.0%
! TTTTTCCTCACCTTAATTCA+TGG + chr5_2:19259554-19259573 Msa0761720:CDS 30.0%
TTGAAGGTAACCATGAATTA+AGG - chr5_2:19259567-19259586 None:intergenic 30.0%
TAATTCATGGTTACCTTCAA+TGG + chr5_2:19259567-19259586 Msa0761720:CDS 30.0%
ATAGATAAACCTTCCATTGA+AGG - chr5_2:19259583-19259602 None:intergenic 30.0%
!!! AGAACTTTTGAAATCCAAAC+TGG + chr5_2:19259745-19259764 Msa0761720:CDS 30.0%
AATTACTTGATTCAAGGTTC+TGG - chr5_2:19259915-19259934 None:intergenic 30.0%
! CATTTATTGACTGGTAATGA+AGG + chr5_2:19260066-19260085 Msa0761720:CDS 30.0%
! TTATCTGAAGCATTAGGAAT+TGG - chr5_2:19260153-19260172 None:intergenic 30.0%
! ACATCATTATCTGAAGCATT+AGG - chr5_2:19260159-19260178 None:intergenic 30.0%
TAATGCTTCAGATAATGATG+TGG + chr5_2:19260158-19260177 Msa0761720:CDS 30.0%
ACAAGATACATAATTGTACC+TGG - chr5_2:19260188-19260207 None:intergenic 30.0%
CTGATATCCTTCATGATAAA+AGG + chr5_2:19260323-19260342 Msa0761720:intron 30.0%
! AATATATTTCAGGTCCTGTT+TGG + chr5_2:19260444-19260463 Msa0761720:intron 30.0%
ATTGAACTGTTTATCCAAAC+AGG - chr5_2:19260461-19260480 None:intergenic 30.0%
ATTTCATAAGCTGTTTGCAT+AGG + chr5_2:19260623-19260642 Msa0761720:intron 30.0%
AGCTATTGTATCCAACATAA+AGG + chr5_2:19260732-19260751 Msa0761720:intron 30.0%
ATGTTCGTGTACTTAGTTTA+TGG + chr5_2:19260789-19260808 Msa0761720:intron 30.0%
!!! AAGGAAAAGAAGGTTTTTTG+CGG - chr5_2:19261446-19261465 None:intergenic 30.0%
!!! ATTACATCTCTTGTTTTCCA+AGG + chr5_2:19261528-19261547 Msa0761720:intron 30.0%
!!! TTACATCTCTTGTTTTCCAA+GGG + chr5_2:19261529-19261548 Msa0761720:intron 30.0%
AATCTTGTACTAAAAACCCT+TGG - chr5_2:19261548-19261567 None:intergenic 30.0%
TTGTATATTTGCAGAATGCA+GGG + chr5_2:19261578-19261597 Msa0761720:intron 30.0%
TAAAAAGGTCACAGAAAATG+TGG + chr5_2:19261612-19261631 Msa0761720:CDS 30.0%
! TAAGATTTTACGAAGGGAAA+GGG - chr5_2:19261726-19261745 None:intergenic 30.0%
!! GGAATCTAAGATTTTACGAA+GGG - chr5_2:19261732-19261751 None:intergenic 30.0%
!! AGGAATCTAAGATTTTACGA+AGG - chr5_2:19261733-19261752 None:intergenic 30.0%
TTATTAGATGTAGAAGCCAA+TGG + chr5_2:19261757-19261776 Msa0761720:intron 30.0%
ATTGAAAAAAGATCAGAAGC+AGG - chr5_2:19261861-19261880 None:intergenic 30.0%
CAATTTAGATCGAATTAGAC+AGG + chr5_2:19262000-19262019 Msa0761720:CDS 30.0%
!! ATTATTTAATTTGCCGTGGT+TGG + chr5_2:19262059-19262078 Msa0761720:intron 30.0%
!! TTATTTAATTTGCCGTGGTT+GGG + chr5_2:19262060-19262079 Msa0761720:intron 30.0%
! CATTTGATCATTGTGGTTTT+TGG + chr5_2:19262124-19262143 Msa0761720:intron 30.0%
TTGCACCAAGTGAAATTTAT+TGG + chr5_2:19262274-19262293 Msa0761720:intron 30.0%
AATGGCCAATAAATTTCACT+TGG - chr5_2:19262282-19262301 None:intergenic 30.0%
GACGGTTGTAAAATGTTTAT+TGG + chr5_2:19262503-19262522 Msa0761720:intron 30.0%
TAAAGTTCTTCCTTCAAAAC+AGG + chr5_2:19262828-19262847 Msa0761720:three_prime_UTR 30.0%
! TGGGATATTTTATTAACAGG+AGG + chr5_2:19263035-19263054 Msa0761720:three_prime_UTR 30.0%
AATATCACTAGCTAAAAGAG+CGG - chr5_2:19263134-19263153 None:intergenic 30.0%
! CCCAAGTATTTATGGAATTT+TGG + chr5_2:19263296-19263315 Msa0761720:three_prime_UTR 30.0%
GCCAAAATTCCATAAATACT+TGG - chr5_2:19263300-19263319 None:intergenic 30.0%
TGCACTATGTGAAATTTGAT+TGG + chr5_2:19263324-19263343 Msa0761720:three_prime_UTR 30.0%
!! AAAAGGGTATTGTGAAGGAT+TGG - chr5_2:19257077-19257096 None:intergenic 35.0%
!! GAATGAAAAGGGTATTGTGA+AGG - chr5_2:19257082-19257101 None:intergenic 35.0%
! GGTGAAAAGGAGATTTGTTT+GGG - chr5_2:19257139-19257158 None:intergenic 35.0%
! TGGTGAAAAGGAGATTTGTT+TGG - chr5_2:19257140-19257159 None:intergenic 35.0%
!! TGATGGGTTGTGATGATTTA+AGG - chr5_2:19257171-19257190 None:intergenic 35.0%
TTTAGTCTGTCATTCGTCAA+CGG + chr5_2:19257398-19257417 Msa0761720:CDS 35.0%
! GACTGATGATAGGGTTATTT+TGG + chr5_2:19257512-19257531 Msa0761720:CDS 35.0%
! GATCGAAAAGGGATTGTTTT+GGG + chr5_2:19257552-19257571 Msa0761720:CDS 35.0%
!! GTGTTGTTAGGGTTTTTGAT+AGG + chr5_2:19257610-19257629 Msa0761720:CDS 35.0%
! TTAGGGTTTTTGATAGGGTT+TGG + chr5_2:19257616-19257635 Msa0761720:CDS 35.0%
! TAGGGTTTTTGATAGGGTTT+GGG + chr5_2:19257617-19257636 Msa0761720:CDS 35.0%
TTGGCACATAGTTCTCAAAT+TGG + chr5_2:19257687-19257706 Msa0761720:CDS 35.0%
!! TCTCAAATTGGTGCTATTGT+TGG + chr5_2:19257699-19257718 Msa0761720:CDS 35.0%
!! CTCAAATTGGTGCTATTGTT+GGG + chr5_2:19257700-19257719 Msa0761720:CDS 35.0%
!! ACTGGTTTGATTTAAGGAGT+TGG - chr5_2:19257960-19257979 None:intergenic 35.0%
TATGAAAAAGGTTCACACGA+TGG + chr5_2:19258041-19258060 Msa0761720:intron 35.0%
! TTTGAAATCGATAGTATCGG+TGG - chr5_2:19258481-19258500 None:intergenic 35.0%
GGAAAGAATTCCAACAATTG+AGG - chr5_2:19258663-19258682 None:intergenic 35.0%
AAGTCCTTAAGAAAGGAGAT+TGG + chr5_2:19258781-19258800 Msa0761720:intron 35.0%
GTTCCTTATCTTATGCCTTA+AGG - chr5_2:19258841-19258860 None:intergenic 35.0%
CCGTGTGATAAATTAGAATG+AGG + chr5_2:19259213-19259232 Msa0761720:intron 35.0%
ACAGATAACTGGTGAAAGTT+TGG + chr5_2:19259402-19259421 Msa0761720:intron 35.0%
TTCAAAGATACTTTGCCCAT+CGG - chr5_2:19259478-19259497 None:intergenic 35.0%
CTATCAGACGAGTTAATAGT+TGG - chr5_2:19259508-19259527 None:intergenic 35.0%
CAACTATTAACTCGTCTGAT+AGG + chr5_2:19259506-19259525 Msa0761720:CDS 35.0%
AAACAGACAACAAACGCTAA+CGG + chr5_2:19259616-19259635 Msa0761720:CDS 35.0%
!! AACTCTAGCATTGACTCAAA+AGG + chr5_2:19259640-19259659 Msa0761720:CDS 35.0%
CAGGAGAATTACTTGATTCA+AGG - chr5_2:19259921-19259940 None:intergenic 35.0%
AGCACGTTACATTTATTGAC+TGG + chr5_2:19260057-19260076 Msa0761720:CDS 35.0%
TTCTCAAATAGACTCACAAG+TGG + chr5_2:19260648-19260667 Msa0761720:intron 35.0%
ACAAATGAGGACCTTTATGT+TGG - chr5_2:19260746-19260765 None:intergenic 35.0%
CTTCCAGAAACTAACAAATG+AGG - chr5_2:19260759-19260778 None:intergenic 35.0%
CTAAGTACACGAACATTAGA+CGG - chr5_2:19260785-19260804 None:intergenic 35.0%
! CATTAGTGCTTTTACTACTG+AGG + chr5_2:19260923-19260942 Msa0761720:intron 35.0%
AGATATTTCATGCAGATCAC+TGG + chr5_2:19261276-19261295 Msa0761720:intron 35.0%
!!! AGGAAAAGAAGGTTTTTTGC+GGG - chr5_2:19261445-19261464 None:intergenic 35.0%
CTTGTATATTTGCAGAATGC+AGG + chr5_2:19261577-19261596 Msa0761720:intron 35.0%
TGTATATTTGCAGAATGCAG+GGG + chr5_2:19261579-19261598 Msa0761720:intron 35.0%
! AGGGGTGTATCAAACTAAAA+AGG + chr5_2:19261597-19261616 Msa0761720:CDS 35.0%
GGGAGAAAAAATCACAGAAA+AGG - chr5_2:19261706-19261725 None:intergenic 35.0%
! CTAAGATTTTACGAAGGGAA+AGG - chr5_2:19261727-19261746 None:intergenic 35.0%
! TTGGTAAAATCTTTTGGCAG+AGG + chr5_2:19261890-19261909 Msa0761720:intron 35.0%
!! CATGTCTTTGGTTCTGTTTA+TGG + chr5_2:19261965-19261984 Msa0761720:CDS 35.0%
! ACATTTTACAACCGTCCTTA+AGG - chr5_2:19262499-19262518 None:intergenic 35.0%
!! ATATGCTCTAGTGTTGTTTC+TGG + chr5_2:19262617-19262636 Msa0761720:intron 35.0%
!! TATGCTCTAGTGTTGTTTCT+GGG + chr5_2:19262618-19262637 Msa0761720:intron 35.0%
ATATGTACACCAACCACTAA+TGG - chr5_2:19262862-19262881 None:intergenic 35.0%
! AAATGTGTCTGTTAGTCTAC+AGG - chr5_2:19262974-19262993 None:intergenic 35.0%
GTACCAATTAACAGTACAAC+TGG - chr5_2:19263065-19263084 None:intergenic 35.0%
! TGGGGTCTTGCATTTTTGAA+CGG - chr5_2:19257251-19257270 None:intergenic 40.0%
!! GTTTGAAAACGGGTCGTTTT+CGG - chr5_2:19257353-19257372 None:intergenic 40.0%
! ACCCGTTTTCAAACTTCTAC+CGG + chr5_2:19257359-19257378 Msa0761720:CDS 40.0%
ACCCGGTAGAAGTTTGAAAA+CGG - chr5_2:19257364-19257383 None:intergenic 40.0%
! TTTGGTAATTGGGTCGATGT+CGG + chr5_2:19257530-19257549 Msa0761720:CDS 40.0%
! GGATCGAAAAGGGATTGTTT+TGG + chr5_2:19257551-19257570 Msa0761720:CDS 40.0%
!!! AAGGGATTGTTTTGGGTGAT+AGG + chr5_2:19257559-19257578 Msa0761720:CDS 40.0%
!!! AGGGATTGTTTTGGGTGATA+GGG + chr5_2:19257560-19257579 Msa0761720:CDS 40.0%
!! TGTTTTGGGTGATAGGGAAA+TGG + chr5_2:19257566-19257585 Msa0761720:CDS 40.0%
GAGGTTTCTAATGCACAAGA+AGG + chr5_2:19257588-19257607 Msa0761720:CDS 40.0%
!! ATGCACAAGAAGGTGTTGTT+AGG + chr5_2:19257598-19257617 Msa0761720:CDS 40.0%
!! TGCACAAGAAGGTGTTGTTA+GGG + chr5_2:19257599-19257618 Msa0761720:CDS 40.0%
! AGGGTTTTTGATAGGGTTTG+GGG + chr5_2:19257618-19257637 Msa0761720:CDS 40.0%
GGGGAAATGGTGAAGTTTAT+GGG + chr5_2:19257658-19257677 Msa0761720:CDS 40.0%
!! ATTGGTGCTATTGTTGGGAA+AGG + chr5_2:19257705-19257724 Msa0761720:CDS 40.0%
TCATCTTTAGCAGCACAATG+TGG - chr5_2:19257792-19257811 None:intergenic 40.0%
! ACATTGTGCTGCTAAAGATG+AGG + chr5_2:19257791-19257810 Msa0761720:CDS 40.0%
TGAGTTGTTCTCGTTTGAAG+CGG + chr5_2:19257930-19257949 Msa0761720:intron 40.0%
! GGTTTGATTTAAGGAGTTGG+AGG - chr5_2:19257957-19257976 None:intergenic 40.0%
TTAGGCACGGTAAATGCAAT+TGG + chr5_2:19258137-19258156 Msa0761720:intron 40.0%
! CTATTTTACAATCGCATGCG+TGG - chr5_2:19258255-19258274 None:intergenic 40.0%
TTTCCATGTCATACCACCTA+GGG + chr5_2:19258313-19258332 Msa0761720:intron 40.0%
TTAAGCTCAACCACCTCAAA+GGG - chr5_2:19258350-19258369 None:intergenic 40.0%
TTTAAGCTCAACCACCTCAA+AGG - chr5_2:19258351-19258370 None:intergenic 40.0%
ATCCAAAACCTTAGCCCAAA+GGG - chr5_2:19258455-19258474 None:intergenic 40.0%
TGGCTTGATCTGCAAAATTG+TGG + chr5_2:19258516-19258535 Msa0761720:intron 40.0%
TGCCCTTAAGGCATAAGATA+AGG + chr5_2:19258835-19258854 Msa0761720:intron 40.0%
!! ATTCCTTAACTTGTGCCCTA+AGG + chr5_2:19258962-19258981 Msa0761720:intron 40.0%
!! TTCCTTAACTTGTGCCCTAA+GGG + chr5_2:19258963-19258982 Msa0761720:intron 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG - chr5_2:19258980-19258999 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG - chr5_2:19258981-19259000 None:intergenic 40.0%
!!! ATTTTGGGATTGTAGGTCTG+TGG + chr5_2:19259189-19259208 Msa0761720:intron 40.0%
!!! TTTTGGGATTGTAGGTCTGT+GGG + chr5_2:19259190-19259209 Msa0761720:intron 40.0%
TCAGACGAGTTAATAGTTGG+TGG - chr5_2:19259505-19259524 None:intergenic 40.0%
AAGATCCTCATGTGTGTAAG+AGG - chr5_2:19259536-19259555 None:intergenic 40.0%
GGTAACCATGAATTAAGGTG+AGG - chr5_2:19259562-19259581 None:intergenic 40.0%
TCATGGTTACCTTCAATGGA+AGG + chr5_2:19259571-19259590 Msa0761720:CDS 40.0%
!! AGCATTGACTCAAAAGGTTC+CGG + chr5_2:19259646-19259665 Msa0761720:CDS 40.0%
GTAGTGTGATCGGCAAAAAA+GGG + chr5_2:19259713-19259732 Msa0761720:CDS 40.0%
!! AGACAATAGAAGCACCAGTT+TGG - chr5_2:19259762-19259781 None:intergenic 40.0%
TTCATACTGACCTAAAGGAG+GGG - chr5_2:19259788-19259807 None:intergenic 40.0%
CTTCATACTGACCTAAAGGA+GGG - chr5_2:19259789-19259808 None:intergenic 40.0%
TCTTCATACTGACCTAAAGG+AGG - chr5_2:19259790-19259809 None:intergenic 40.0%
!!! CGTCACTATTTCTGCTTTTG+AGG + chr5_2:19259816-19259835 Msa0761720:CDS 40.0%
!! ACTTGATTCAAGGTTCTGGA+CGG - chr5_2:19259911-19259930 None:intergenic 40.0%
AGAATAACAGCATCTTGTGC+AGG - chr5_2:19259940-19259959 None:intergenic 40.0%
GCTGAAGATCACATTCGAAA+TGG + chr5_2:19259976-19259995 Msa0761720:CDS 40.0%
ATTAAAAGCCTCGCAGTTAC+AGG - chr5_2:19260030-19260049 None:intergenic 40.0%
! ATTGACTGGTAATGAAGGTC+AGG + chr5_2:19260071-19260090 Msa0761720:CDS 40.0%
TCAGAATTGAGAGAAGTGAG+TGG + chr5_2:19260099-19260118 Msa0761720:CDS 40.0%
CAGAATTGAGAGAAGTGAGT+GGG + chr5_2:19260100-19260119 Msa0761720:CDS 40.0%
AGAATTGAGAGAAGTGAGTG+GGG + chr5_2:19260101-19260120 Msa0761720:CDS 40.0%
GCTGATATTCAACTACTGCA+TGG + chr5_2:19260123-19260142 Msa0761720:CDS 40.0%
AGATAATGATGTGGTAGTCC+AGG + chr5_2:19260167-19260186 Msa0761720:CDS 40.0%
GTCAAGCTTATAAGCTATCC+TGG + chr5_2:19260563-19260582 Msa0761720:intron 40.0%
! GGTCCTCATTTGTTAGTTTC+TGG + chr5_2:19260753-19260772 Msa0761720:intron 40.0%
! TTACTACTGAGGCATTCATG+TGG + chr5_2:19260934-19260953 Msa0761720:intron 40.0%
!! GAGCAATTCTGAGATTGTCT+AGG - chr5_2:19261180-19261199 None:intergenic 40.0%
TATTTCATGCAGATCACTGG+TGG + chr5_2:19261279-19261298 Msa0761720:intron 40.0%
GGATAATCCTTTACCCAATG+AGG + chr5_2:19261350-19261369 Msa0761720:CDS 40.0%
! AACCTTCTTTTCCTTTTGCG+AGG + chr5_2:19261451-19261470 Msa0761720:CDS 40.0%
AACCTCGCAAAAGGAAAAGA+AGG - chr5_2:19261456-19261475 None:intergenic 40.0%
AAGAAGGTGAAGAATACCTG+TGG - chr5_2:19261483-19261502 None:intergenic 40.0%
TTAATCGAGAATGTGGAACC+TGG + chr5_2:19261649-19261668 Msa0761720:CDS 40.0%
ATAGTCTCAGAGCATGTCTT+TGG + chr5_2:19261953-19261972 Msa0761720:CDS 40.0%
GGTTCTGTTTATGGTGAAGA+TGG + chr5_2:19261974-19261993 Msa0761720:CDS 40.0%
TCTGTTTATGGTGAAGATGG+CGG + chr5_2:19261977-19261996 Msa0761720:CDS 40.0%
TAACATCTGCACCTGAAATC+TGG - chr5_2:19262645-19262664 None:intergenic 40.0%
TGAGCTGCAAATGTTTGATC+AGG - chr5_2:19262727-19262746 None:intergenic 40.0%
AGTTCTTCCTTCAAAACAGG+AGG + chr5_2:19262831-19262850 Msa0761720:three_prime_UTR 40.0%
GCTCCAGTTGTACTGTTAAT+TGG + chr5_2:19263059-19263078 Msa0761720:three_prime_UTR 40.0%
CTGCAACTCCCAAGTATTTA+TGG + chr5_2:19263288-19263307 Msa0761720:three_prime_UTR 40.0%
GTGGTGATCAGTGGTTTCAA+CGG - chr5_2:19257286-19257305 None:intergenic 45.0%
TTGTTCCGTTTCAACGACGA+CGG - chr5_2:19257330-19257349 None:intergenic 45.0%
CCCGGTAGAAGTTTGAAAAC+GGG - chr5_2:19257363-19257382 None:intergenic 45.0%
! CCCGTTTTCAAACTTCTACC+GGG + chr5_2:19257360-19257379 Msa0761720:CDS 45.0%
TTTGGGTGATAGGGAAATGG+AGG + chr5_2:19257569-19257588 Msa0761720:CDS 45.0%
! GGGTTTTTGATAGGGTTTGG+GGG + chr5_2:19257619-19257638 Msa0761720:CDS 45.0%
GAAAGTGAGAAAGGGGGAAA+TGG + chr5_2:19257645-19257664 Msa0761720:CDS 45.0%
GGGGGAAATGGTGAAGTTTA+TGG + chr5_2:19257657-19257676 Msa0761720:CDS 45.0%
! GTGCTATTGTTGGGAAAGGA+GGG + chr5_2:19257709-19257728 Msa0761720:CDS 45.0%
GAAAAAGGTTCACACGATGG+AGG + chr5_2:19258044-19258063 Msa0761720:intron 45.0%
CGTGGATTTATTCGCATACG+TGG - chr5_2:19258237-19258256 None:intergenic 45.0%
CTTTCCATGTCATACCACCT+AGG + chr5_2:19258312-19258331 Msa0761720:intron 45.0%
TTCCATGTCATACCACCTAG+GGG + chr5_2:19258314-19258333 Msa0761720:intron 45.0%
TAAGCTCAACCACCTCAAAG+GGG - chr5_2:19258349-19258368 None:intergenic 45.0%
AGTTTGAACCCTTTGGGCTA+AGG + chr5_2:19258444-19258463 Msa0761720:intron 45.0%
! AACCCTTTGGGCTAAGGTTT+TGG + chr5_2:19258450-19258469 Msa0761720:intron 45.0%
GATCCAAAACCTTAGCCCAA+AGG - chr5_2:19258456-19258475 None:intergenic 45.0%
!! GAAATCGATAGTATCGGTGG+CGG - chr5_2:19258478-19258497 None:intergenic 45.0%
TCTTCAAGATTGTCCACCGA+TGG + chr5_2:19259459-19259478 Msa0761720:CDS 45.0%
CTTCAAGATTGTCCACCGAT+GGG + chr5_2:19259460-19259479 Msa0761720:CDS 45.0%
AAAGATACTTTGCCCATCGG+TGG - chr5_2:19259475-19259494 None:intergenic 45.0%
GTCAACCTCTTACACACATG+AGG + chr5_2:19259528-19259547 Msa0761720:CDS 45.0%
TCTGAAAACAACTGCGTGTC+CGG - chr5_2:19259668-19259687 None:intergenic 45.0%
CTTTGCTCTAACAACGTAGC+TGG + chr5_2:19259691-19259710 Msa0761720:CDS 45.0%
! AACGTAGCTGGTAGTGTGAT+CGG + chr5_2:19259703-19259722 Msa0761720:CDS 45.0%
GGTAGTGTGATCGGCAAAAA+AGG + chr5_2:19259712-19259731 Msa0761720:CDS 45.0%
ATTGTCTTTGCCCCTCCTTT+AGG + chr5_2:19259775-19259794 Msa0761720:CDS 45.0%
CGCTCTTCATACTGACCTAA+AGG - chr5_2:19259793-19259812 None:intergenic 45.0%
AGTGGCTGAGTTTCTTGTCA+GGG + chr5_2:19261205-19261224 Msa0761720:intron 45.0%
TGTGGTAGAAACCTCGCAAA+AGG - chr5_2:19261465-19261484 None:intergenic 45.0%
! TTTTGCGAGGTTTCTACCAC+AGG + chr5_2:19261464-19261483 Msa0761720:CDS 45.0%
CAGGTCAGTATAATCCAGCT+GGG + chr5_2:19261672-19261691 Msa0761720:intron 45.0%
CACAGTAGTGTTTGTCACAG+TGG - chr5_2:19261927-19261946 None:intergenic 45.0%
CACTGTGACAAACACTACTG+TGG + chr5_2:19261925-19261944 Msa0761720:CDS 45.0%
AGTTTAACACAGCCCAACCA+CGG - chr5_2:19262075-19262094 None:intergenic 45.0%
! TATGGATTATGGTGTCCACG+AGG + chr5_2:19262466-19262485 Msa0761720:intron 45.0%
! ATGGATTATGGTGTCCACGA+GGG + chr5_2:19262467-19262486 Msa0761720:intron 45.0%
!! TGTTTCTGGGACCAGATTTC+AGG + chr5_2:19262631-19262650 Msa0761720:intron 45.0%
AAACTGCACAAGCAAGCTGA+TGG + chr5_2:19262770-19262789 Msa0761720:CDS 45.0%
TCTTCCTTCAAAACAGGAGG+AGG + chr5_2:19262834-19262853 Msa0761720:three_prime_UTR 45.0%
! TGTGTCTGTTAGTCTACAGG+AGG - chr5_2:19262971-19262990 None:intergenic 45.0%
AGCTAAAAGAGCGGAGGAAA+AGG - chr5_2:19263125-19263144 None:intergenic 45.0%
ATCACTAGCTAAAAGAGCGG+AGG - chr5_2:19263131-19263150 None:intergenic 45.0%
!! AATAATAATAATAATACAAA+GGG - chr5_2:19259004-19259023 None:intergenic 5.0%
!! TAATAATAATAATAATACAA+AGG - chr5_2:19259005-19259024 None:intergenic 5.0%
GTGATCAGTGGTTTCAACGG+CGG - chr5_2:19257283-19257302 None:intergenic 50.0%
AAACGAAACGCGATCTGACC+CGG - chr5_2:19257381-19257400 None:intergenic 50.0%
GTCTGTCATTCGTCAACGGT+TGG + chr5_2:19257402-19257421 Msa0761720:CDS 50.0%
TGTCATTCGTCAACGGTTGG+TGG + chr5_2:19257405-19257424 Msa0761720:CDS 50.0%
GTCATTCGTCAACGGTTGGT+GGG + chr5_2:19257406-19257425 Msa0761720:CDS 50.0%
!! TCAACGGTTGGTGGGTTGAT+CGG + chr5_2:19257414-19257433 Msa0761720:CDS 50.0%
!! GTGGGTTGATCGGAAGTTCA+GGG + chr5_2:19257424-19257443 Msa0761720:CDS 50.0%
GGTCAATCGTTTCTCAGCTC+CGG + chr5_2:19257445-19257464 Msa0761720:CDS 50.0%
! TTTTGCATCCGGTTTCTCGC+CGG - chr5_2:19257467-19257486 None:intergenic 50.0%
!! CTCGCAGTGGATTTTGCATC+CGG - chr5_2:19257478-19257497 None:intergenic 50.0%
CAAAATCCACTGCGAGGATG+CGG + chr5_2:19257482-19257501 Msa0761720:CDS 50.0%
GGTGGTTGGGACTGATGATA+GGG + chr5_2:19257503-19257522 Msa0761720:CDS 50.0%
GGTCGATGTCGGATCGAAAA+GGG + chr5_2:19257541-19257560 Msa0761720:CDS 50.0%
TGGGGGCTTGAAAGTGAGAA+AGG + chr5_2:19257636-19257655 Msa0761720:CDS 50.0%
GGGGGCTTGAAAGTGAGAAA+GGG + chr5_2:19257637-19257656 Msa0761720:CDS 50.0%
GGGGCTTGAAAGTGAGAAAG+GGG + chr5_2:19257638-19257657 Msa0761720:CDS 50.0%
GGGCTTGAAAGTGAGAAAGG+GGG + chr5_2:19257639-19257658 Msa0761720:CDS 50.0%
!! GGTGCTATTGTTGGGAAAGG+AGG + chr5_2:19257708-19257727 Msa0761720:CDS 50.0%
TTAGCAGCACAATGTGGAGC+AGG - chr5_2:19257786-19257805 None:intergenic 50.0%
TAGTGGTCGGGTAACTCAAC+TGG - chr5_2:19257978-19257997 None:intergenic 50.0%
TGCCCTTAGGGCACAAGTTA+AGG - chr5_2:19258968-19258987 None:intergenic 50.0%
ATTTCAGCCAGCTACTGCTG+TGG + chr5_2:19259999-19260018 Msa0761720:CDS 50.0%
TGGAATCACCTGTAACTGCG+AGG + chr5_2:19260019-19260038 Msa0761720:CDS 50.0%
CTCAGAATTGCTCATGCCAG+TGG + chr5_2:19261187-19261206 Msa0761720:intron 50.0%
CTGACAAGAAACTCAGCCAC+TGG - chr5_2:19261206-19261225 None:intergenic 50.0%
CAGTGGCTGAGTTTCTTGTC+AGG + chr5_2:19261204-19261223 Msa0761720:intron 50.0%
GCAAGCACCTCATTGGGTAA+AGG - chr5_2:19261360-19261379 None:intergenic 50.0%
GCTTCAGCAAGCACCTCATT+GGG - chr5_2:19261366-19261385 None:intergenic 50.0%
TGCTTCAGCAAGCACCTCAT+TGG - chr5_2:19261367-19261386 None:intergenic 50.0%
CTGGATTATACTGACCTGCC+AGG - chr5_2:19261670-19261689 None:intergenic 50.0%
GCAGGTCAGTATAATCCAGC+TGG + chr5_2:19261671-19261690 Msa0761720:intron 50.0%
GAGGGCAATCTCCTTAAGGA+CGG + chr5_2:19262485-19262504 Msa0761720:intron 50.0%
GTATTTGATCCCAGCAGCAC+CGG + chr5_2:19262667-19262686 Msa0761720:CDS 50.0%
AACCTTCCCTCCACTTGTAC+CGG - chr5_2:19262689-19262708 None:intergenic 50.0%
GGAGGGAAGGTTGTGATATC+TGG + chr5_2:19262697-19262716 Msa0761720:CDS 50.0%
TGCACAAGCAAGCTGATGGA+TGG + chr5_2:19262774-19262793 Msa0761720:exon 50.0%
! CAAGCAAGCTGATGGATGGA+TGG + chr5_2:19262778-19262797 Msa0761720:exon 50.0%
CTCGATGTGAAGGTGGGTAT+TGG + chr5_2:19263223-19263242 Msa0761720:three_prime_UTR 50.0%
ATCAGTGGTTTCAACGGCGG+CGG - chr5_2:19257280-19257299 None:intergenic 55.0%
! TTGTGGGTGGTGGTGATCAG+TGG - chr5_2:19257295-19257314 None:intergenic 55.0%
CACCACCGTCGTCGTTGAAA+CGG + chr5_2:19257322-19257341 Msa0761720:CDS 55.0%
TTCCGTTTCAACGACGACGG+TGG - chr5_2:19257327-19257346 None:intergenic 55.0%
!! GGTGGGTTGATCGGAAGTTC+AGG + chr5_2:19257423-19257442 Msa0761720:CDS 55.0%
CGGATGCAAAATCCACTGCG+AGG + chr5_2:19257476-19257495 Msa0761720:CDS 55.0%
CGGTGGTTGGGACTGATGAT+AGG + chr5_2:19257502-19257521 Msa0761720:CDS 55.0%
GGGTCGATGTCGGATCGAAA+AGG + chr5_2:19257540-19257559 Msa0761720:CDS 55.0%
GGTGATTCCACAGCAGTAGC+TGG - chr5_2:19260009-19260028 None:intergenic 55.0%
TCGAGAATGTGGAACCTGGC+AGG + chr5_2:19261653-19261672 Msa0761720:CDS 55.0%
! AAAAGGCGCATACTCCCAGC+TGG - chr5_2:19261689-19261708 None:intergenic 55.0%
CCTTAAGGAGATTGCCCTCG+TGG - chr5_2:19262484-19262503 None:intergenic 55.0%
CCACGAGGGCAATCTCCTTA+AGG + chr5_2:19262481-19262500 Msa0761720:intron 55.0%
!! GGCACCTCCTCCTGTTTTGA+AGG - chr5_2:19262841-19262860 None:intergenic 55.0%
!! ACAGGAGGAGGTGCCATTAG+TGG + chr5_2:19262846-19262865 Msa0761720:three_prime_UTR 55.0%
!! GAGGAGGTGCCATTAGTGGT+TGG + chr5_2:19262850-19262869 Msa0761720:three_prime_UTR 55.0%
CTAGTTCGCGCTCGATGTGA+AGG + chr5_2:19263213-19263232 Msa0761720:three_prime_UTR 55.0%
TTCGCGCTCGATGTGAAGGT+GGG + chr5_2:19263217-19263236 Msa0761720:three_prime_UTR 55.0%
TCAACGGCGGCGGAGAAAGT+GGG - chr5_2:19257270-19257289 None:intergenic 60.0%
TTCAACGGCGGCGGAGAAAG+TGG - chr5_2:19257271-19257290 None:intergenic 60.0%
!! ACGGTGGTGGTGGTGGTTGT+GGG - chr5_2:19257311-19257330 None:intergenic 60.0%
! TTCAACGACGACGGTGGTGG+TGG - chr5_2:19257321-19257340 None:intergenic 60.0%
CGTTTCAACGACGACGGTGG+TGG - chr5_2:19257324-19257343 None:intergenic 60.0%
TCTCAGCTCCGGCGAGAAAC+CGG + chr5_2:19257456-19257475 Msa0761720:CDS 60.0%
AATCCACTGCGAGGATGCGG+TGG + chr5_2:19257485-19257504 Msa0761720:CDS 60.0%
ACTGCGAGGATGCGGTGGTT+GGG + chr5_2:19257490-19257509 Msa0761720:CDS 60.0%
CGCCCCTAGGTGGTATGACA+TGG - chr5_2:19258319-19258338 None:intergenic 60.0%
GTCATACCACCTAGGGGCGA+AGG + chr5_2:19258320-19258339 Msa0761720:intron 60.0%
! CGAAGGCAACCCCTTTGAGG+TGG + chr5_2:19258337-19258356 Msa0761720:intron 60.0%
!! CCACTTGTACCGGTGCTGCT+GGG - chr5_2:19262679-19262698 None:intergenic 60.0%
!! TCCACTTGTACCGGTGCTGC+TGG - chr5_2:19262680-19262699 None:intergenic 60.0%
!! AGCAGCACCGGTACAAGTGG+AGG + chr5_2:19262679-19262698 Msa0761720:CDS 60.0%
!! GCAGCACCGGTACAAGTGGA+GGG + chr5_2:19262680-19262699 Msa0761720:CDS 60.0%
CACCGGTACAAGTGGAGGGA+AGG + chr5_2:19262684-19262703 Msa0761720:CDS 60.0%
GTTCGCGCTCGATGTGAAGG+TGG + chr5_2:19263216-19263235 Msa0761720:three_prime_UTR 60.0%
CAACGGCGGCGGAGAAAGTG+GGG - chr5_2:19257269-19257288 None:intergenic 65.0%
!! GTGGTGGTGGTTGTGGGTGG+TGG - chr5_2:19257305-19257324 None:intergenic 65.0%
!! GTGGTGGTGGTGGTTGTGGG+TGG - chr5_2:19257308-19257327 None:intergenic 65.0%
!! GACGGTGGTGGTGGTGGTTG+TGG - chr5_2:19257312-19257331 None:intergenic 65.0%
!! AACGACGACGGTGGTGGTGG+TGG - chr5_2:19257318-19257337 None:intergenic 65.0%
CAACCACCGCATCCTCGCAG+TGG - chr5_2:19257491-19257510 None:intergenic 65.0%
CACTGCGAGGATGCGGTGGT+TGG + chr5_2:19257489-19257508 Msa0761720:CDS 65.0%
AAGGGGTTGCCTTCGCCCCT+AGG - chr5_2:19258332-19258351 None:intergenic 65.0%
GGGCGAAGGCAACCCCTTTG+AGG + chr5_2:19258334-19258353 Msa0761720:intron 65.0%
!! CCCAGCAGCACCGGTACAAG+TGG + chr5_2:19262676-19262695 Msa0761720:CDS 65.0%
GGGTTGCCTTCGCCCCTAGG+TGG - chr5_2:19258329-19258348 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 19257018 19263390 19257018 ID=Msa0761720;Name=Msa0761720
chr5_2 mRNA 19257018 19263390 19257018 ID=Msa0761720-mRNA-1;Parent=Msa0761720;Name=Msa0761720-mRNA-1;_AED=0.15;_eAED=0.15;_QI=240|1|1|1|1|1|7|601|601
chr5_2 exon 19257018 19257824 19257018 ID=Msa0761720-mRNA-1:exon:8268;Parent=Msa0761720-mRNA-1
chr5_2 exon 19259406 19259837 19259406 ID=Msa0761720-mRNA-1:exon:8269;Parent=Msa0761720-mRNA-1
chr5_2 exon 19259916 19260188 19259916 ID=Msa0761720-mRNA-1:exon:8270;Parent=Msa0761720-mRNA-1
chr5_2 exon 19261291 19261485 19261291 ID=Msa0761720-mRNA-1:exon:8271;Parent=Msa0761720-mRNA-1
chr5_2 exon 19261592 19261674 19261592 ID=Msa0761720-mRNA-1:exon:8272;Parent=Msa0761720-mRNA-1
chr5_2 exon 19261910 19262021 19261910 ID=Msa0761720-mRNA-1:exon:8273;Parent=Msa0761720-mRNA-1
chr5_2 exon 19262646 19263390 19262646 ID=Msa0761720-mRNA-1:exon:8274;Parent=Msa0761720-mRNA-1
chr5_2 five_prime_UTR 19257018 19257257 19257018 ID=Msa0761720-mRNA-1:five_prime_utr;Parent=Msa0761720-mRNA-1
chr5_2 CDS 19257258 19257824 19257258 ID=Msa0761720-mRNA-1:cds;Parent=Msa0761720-mRNA-1
chr5_2 CDS 19259406 19259837 19259406 ID=Msa0761720-mRNA-1:cds;Parent=Msa0761720-mRNA-1
chr5_2 CDS 19259916 19260188 19259916 ID=Msa0761720-mRNA-1:cds;Parent=Msa0761720-mRNA-1
chr5_2 CDS 19261291 19261485 19261291 ID=Msa0761720-mRNA-1:cds;Parent=Msa0761720-mRNA-1
chr5_2 CDS 19261592 19261674 19261592 ID=Msa0761720-mRNA-1:cds;Parent=Msa0761720-mRNA-1
chr5_2 CDS 19261910 19262021 19261910 ID=Msa0761720-mRNA-1:cds;Parent=Msa0761720-mRNA-1
chr5_2 CDS 19262646 19262789 19262646 ID=Msa0761720-mRNA-1:cds;Parent=Msa0761720-mRNA-1
chr5_2 three_prime_UTR 19262790 19263390 19262790 ID=Msa0761720-mRNA-1:three_prime_utr;Parent=Msa0761720-mRNA-1
Gene Sequence

>Msa0761720

ATGCAAGACCCCACTTTCTCCGCCGCCGTTGAAACCACTGATCACCACCACCCACAACCACCACCACCACCGTCGTCGTTGAAACGGAACAACCGAAAACGACCCGTTTTCAAACTTCTACCGGGTCAGATCGCGTTTCGTTTAGTCTGTCATTCGTCAACGGTTGGTGGGTTGATCGGAAGTTCAGGGTCAATCGTTTCTCAGCTCCGGCGAGAAACCGGATGCAAAATCCACTGCGAGGATGCGGTGGTTGGGACTGATGATAGGGTTATTTTGGTAATTGGGTCGATGTCGGATCGAAAAGGGATTGTTTTGGGTGATAGGGAAATGGAGGTTTCTAATGCACAAGAAGGTGTTGTTAGGGTTTTTGATAGGGTTTGGGGGCTTGAAAGTGAGAAAGGGGGAAATGGTGAAGTTTATGGGAAATTGTTGGCACATAGTTCTCAAATTGGTGCTATTGTTGGGAAAGGAGGGAAGAATATAAGTAATATTAGGAATAATAGTGGTTCTAATATTAGGGTTTGTCCTGCTCCACATTGTGCTGCTAAAGATGAGGAGTTAATTCTTATAACTGGTGAAAGTTTGGCTGTAAAGAAAGCACTGATTTATGTATCTTATTGTCTTCAAGATTGTCCACCGATGGGCAAAGTATCTTTGAACACGCCACCAACTATTAACTCGTCTGATAGGTCAACCTCTTACACACATGAGGATCTTTTTCCTCACCTTAATTCATGGTTACCTTCAATGGAAGGTTTATCTATAAACGATGCTTCAAAACAGACAACAAACGCTAACGGAAACTCTAGCATTGACTCAAAAGGTTCCGGACACGCAGTTGTTTTCAGATTACTTTGCTCTAACAACGTAGCTGGTAGTGTGATCGGCAAAAAAGGGTCTATAGTTAGAACTTTTGAAATCCAAACTGGTGCTTCTATTGTCTTTGCCCCTCCTTTAGGTCAGTATGAAGAGCGCATCGTCACTATTTCTGCTTTTGAGAACCTTGAATCAAGTAATTCTCCTGCACAAGATGCTGTTATTCTTGTCTTCACTAGAATTGCTGAAGATCACATTCGAAATGGATTTCAGCCAGCTACTGCTGTGGAATCACCTGTAACTGCGAGGCTTTTAATCACAACAAGCACGTTACATTTATTGACTGGTAATGAAGGTCAGGTGATTTCAGAATTGAGAGAAGTGAGTGGGGCTGATATTCAACTACTGCATGGAGAGCCAATTCCTAATGCTTCAGATAATGATGTGGTAGTCCAGATCACTGGTGGATACAGATGCGTAGAAAATGCTCTACGTAAAATCACTTCTATAATTAGGGATAATCCTTTACCCAATGAGGTGCTTGCTGAAGCAAGAGTCAAACCAAGTTTTCCTTTAAATAAAGATACTGTTAGGAGTAAGTTCATTACCCGCAAAAAACCTTCTTTTCCTTTTGCGAGGTTTCTACCACAGAATGCAGGGGTGTATCAAACTAAAAAGGTCACAGAAAATGTGGAACCACATAAAAATTTAATCGAGAATGTGGAACCTGGCAGAGGAAACATTGTTGCCACTGTGACAAACACTACTGTGGAGATTATAGTCTCAGAGCATGTCTTTGGTTCTGTTTATGGTGAAGATGGCGGCAATTTAGATCGAATTAGACAGATTTCAGGTGCAGATGTTACTGTATTTGATCCCAGCAGCACCGGTACAAGTGGAGGGAAGGTTGTGATATCTGGAACACCTGATCAAACATTTGCAGCTCAGAGTTTGCTTCAAGCTTTCATTCAAACTGCACAAGCAAGCTGA
Protein sequence

>Msa0761720

MQDPTFSAAVETTDHHHPQPPPPPSSLKRNNRKRPVFKLLPGQIAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKIHCEDAVVGTDDRVILVIGSMSDRKGIVLGDREMEVSNAQEGVVRVFDRVWGLESEKGGNGEVYGKLLAHSSQIGAIVGKGGKNISNIRNNSGSNIRVCPAPHCAAKDEELILITGESLAVKKALIYVSYCLQDCPPMGKVSLNTPPTINSSDRSTSYTHEDLFPHLNSWLPSMEGLSINDASKQTTNANGNSSIDSKGSGHAVVFRLLCSNNVAGSVIGKKGSIVRTFEIQTGASIVFAPPLGQYEERIVTISAFENLESSNSPAQDAVILVFTRIAEDHIRNGFQPATAVESPVTARLLITTSTLHLLTGNEGQVISELREVSGADIQLLHGEPIPNASDNDVVVQITGGYRCVENALRKITSIIRDNPLPNEVLAEARVKPSFPLNKDTVRSKFITRKKPSFPFARFLPQNAGVYQTKKVTENVEPHKNLIENVEPGRGNIVATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISGADVTVFDPSSTGTSGGKVVISGTPDQTFAAQSLLQAFIQTAQAS*