AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0269220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269220 MtrunA17_Chr1g0187401 97.101 276 8 0 1 276 1 276 0.0 541
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0269220 AT3G23400.1 58.427 267 105 1 10 276 24 284 5.02e-104 304
Msa0269220 AT3G23400.4 77.119 118 27 0 89 206 97 214 1.47e-63 199
Msa0269220 AT3G23400.3 47.436 156 76 1 10 165 24 173 1.09e-34 124
Msa0269220 AT3G23400.2 47.436 156 76 1 10 165 24 173 1.09e-34 124

Find 103 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAACAAATATTCCTTTA+AGG 0.088989 2_2:+70592715 None:intergenic
AACTTTAATTTCAAAGTAAT+TGG 0.172588 2_2:+70592632 None:intergenic
CCCCTTGAAGTTCAATCTTC+TGG 0.182887 2_2:-70594692 Msa0269220:intron
TGTAACATATTTAACCTTAA+AGG 0.202545 2_2:-70592729 Msa0269220:three_prime_UTR
CAGCAGCAGCTTTCACAATA+AGG 0.227641 2_2:+70594776 None:intergenic
TGTGGAAGAGATTAGATTAA+TGG 0.291979 2_2:+70594953 None:intergenic
CAGACCTGTCCAAGAGTTAT+AGG 0.304929 2_2:+70593556 None:intergenic
ATGCTGCAGAGTGCTGTTGC+TGG 0.321754 2_2:-70593784 Msa0269220:intron
CTTGTTCTTGTTTCTTTCCC+AGG 0.337264 2_2:-70594852 Msa0269220:CDS
TCAAAAGGATTAGAAGGAAT+TGG 0.350636 2_2:+70594724 None:intergenic
GTAGAATCAAAAGGATTAGA+AGG 0.359007 2_2:+70594718 None:intergenic
AAGAAGTAGAAAATGGTAGT+AGG 0.359127 2_2:+70594872 None:intergenic
CAAGAACAAGAAGTAGAAAA+TGG 0.362005 2_2:+70594865 None:intergenic
GGCTTAATATGTTTACCCTT+TGG 0.376009 2_2:+70594805 None:intergenic
AGCAGCAGCTTTCACAATAA+GGG 0.381281 2_2:+70594777 None:intergenic
GAGAAGTTGAGGGGTGAAGA+AGG 0.382924 2_2:+70594905 None:intergenic
ATCTTCCTTGCAACTTATCA+AGG 0.390696 2_2:+70593659 None:intergenic
GATATACCCAACCCACACTA+TGG 0.396755 2_2:-70592777 Msa0269220:three_prime_UTR
CATTTAATATCAAAGCTGTT+AGG 0.413549 2_2:+70592569 None:intergenic
TGTTTATAGATAATTACATA+TGG 0.416492 2_2:-70592700 Msa0269220:three_prime_UTR
CTAATGTGGCAGTTACTTCA+AGG 0.421507 2_2:+70593243 None:intergenic
AGAAGTAGAAAATGGTAGTA+GGG 0.421680 2_2:+70594873 None:intergenic
AGCCTTCCTGTGGGAGGTCC+AGG 0.424885 2_2:+70593583 None:intergenic
AACATTGATGTTGTTGCTCC+TGG 0.427750 2_2:+70594834 None:intergenic
GGAGCTCCATAGTGTGGGTT+GGG 0.430889 2_2:+70592771 None:intergenic
CTCAATGCATCTGGAATTTG+AGG 0.437203 2_2:+70592973 None:intergenic
AAAACCACAGTGAAGACAAC+CGG 0.437328 2_2:-70593027 Msa0269220:CDS
ACTCTAGGTGGGAGCCGTCC+TGG 0.438721 2_2:-70593601 Msa0269220:CDS
AGGGGTGAAGAAGGAGATTG+AGG 0.439438 2_2:+70594914 None:intergenic
TGCTGCAGAGTGCTGTTGCT+GGG 0.444702 2_2:-70593783 Msa0269220:intron
GATTGTGGCCTCAATGCATC+TGG 0.448068 2_2:+70592964 None:intergenic
AGGCTCCTTCCTATAACTCT+TGG 0.456747 2_2:-70593565 Msa0269220:CDS
ACCTTCAGTTGGGTGCTCCA+TGG 0.457796 2_2:-70593277 Msa0269220:CDS
GAGGAGATAGAGGCGAGCTA+AGG 0.461380 2_2:-70592882 Msa0269220:CDS
CTCTATCTCCTCTGGTGACG+CGG 0.465853 2_2:+70592893 None:intergenic
CTCAAATTTGTGAGCTAATG+TGG 0.469198 2_2:+70593229 None:intergenic
GGGTGAGAGAGAGAAGTTGA+GGG 0.469372 2_2:+70594895 None:intergenic
ATCAATGTTCTTACTCCAAA+GGG 0.471955 2_2:-70594820 Msa0269220:CDS
AAAGGCAGATGCTGCGGCTA+AGG 0.475842 2_2:-70593722 Msa0269220:CDS
GAGATATAACACAAAGTCAT+TGG 0.480126 2_2:-70592602 Msa0269220:three_prime_UTR
GGGGTGAAGAAGGAGATTGA+GGG 0.481429 2_2:+70594915 None:intergenic
GAAGCTGATATTTCAATCTC+TGG 0.485146 2_2:-70594754 Msa0269220:CDS
ATTGGAGACTAAAACTGAAA+AGG 0.488872 2_2:+70592650 None:intergenic
TTGATAAGTTGCAAGGAAGA+TGG 0.492943 2_2:-70593657 Msa0269220:CDS
CTCAAATTCCAGATGCATTG+AGG 0.496761 2_2:-70592972 Msa0269220:CDS
GTTACTTCAAGGGGCGGTAG+AGG 0.502869 2_2:+70593254 None:intergenic
GCTAAGGAACTTGAAGAAGC+TGG 0.503259 2_2:-70593706 Msa0269220:CDS
AGGAGATAGAGGCGAGCTAA+GGG 0.505818 2_2:-70592881 Msa0269220:CDS
GCGTTCTCCTCTCGTACTCT+AGG 0.509013 2_2:-70593616 Msa0269220:CDS
TAATATAGTGGACCTTCAGT+TGG 0.514528 2_2:-70593288 Msa0269220:CDS
TCAAGGGGCGGTAGAGGCCA+TGG 0.516112 2_2:+70593260 None:intergenic
GACCAGAAGATTGAACTTCA+AGG 0.517749 2_2:+70594690 None:intergenic
CCACAATCTAATAGAGGAAG+TGG 0.521959 2_2:-70592949 Msa0269220:CDS
AGGAGCTCCATAGTGTGGGT+TGG 0.524813 2_2:+70592770 None:intergenic
AGCTTTCACAATAAGGGATG+AGG 0.526934 2_2:+70594783 None:intergenic
CCTTCCTATAACTCTTGGAC+AGG 0.529460 2_2:-70593560 Msa0269220:intron
TAGCTCGCCTCTATCTCCTC+TGG 0.530340 2_2:+70592885 None:intergenic
AATATAGTGGACCTTCAGTT+GGG 0.531782 2_2:-70593287 Msa0269220:CDS
GCCCTAGGAGCTCCATAGTG+TGG 0.534101 2_2:+70592765 None:intergenic
GGGGTGAGAGAGAGAAGTTG+AGG 0.537948 2_2:+70594894 None:intergenic
CCCACACTATGGAGCTCCTA+GGG 0.543476 2_2:-70592766 Msa0269220:three_prime_UTR
CATCAATGTTCTTACTCCAA+AGG 0.543730 2_2:-70594821 Msa0269220:CDS
ACCAGAAGATTGAACTTCAA+GGG 0.545837 2_2:+70594691 None:intergenic
TTCTCCTCTCGTACTCTAGG+TGG 0.547834 2_2:-70593613 Msa0269220:CDS
TTGAGGCCACAATCTAATAG+AGG 0.552114 2_2:-70592955 Msa0269220:CDS
GAAGTAGAAAATGGTAGTAG+GGG 0.556342 2_2:+70594874 None:intergenic
CCACTTCCTCTATTAGATTG+TGG 0.557605 2_2:+70592949 None:intergenic
CCCTAGGAGCTCCATAGTGT+GGG 0.557670 2_2:+70592766 None:intergenic
AGCCGTCCTGGACCTCCCAC+AGG 0.562196 2_2:-70593589 Msa0269220:CDS
TCTATCTCCTCTGGTGACGC+GGG 0.563631 2_2:+70592894 None:intergenic
ACCCACACTATGGAGCTCCT+AGG 0.567793 2_2:-70592767 Msa0269220:three_prime_UTR
TCTCCTCTCGTACTCTAGGT+GGG 0.571585 2_2:-70593612 Msa0269220:CDS
GCCATGGAGCACCCAACTGA+AGG 0.577155 2_2:+70593276 None:intergenic
GCTTTCACAATAAGGGATGA+GGG 0.583091 2_2:+70594784 None:intergenic
GACAACCTTGATAAGTTGCA+AGG 0.586490 2_2:-70593664 Msa0269220:CDS
AAATGAAGAAGACCTACAAA+AGG 0.586772 2_2:-70593740 Msa0269220:CDS
TAATGTGGCAGTTACTTCAA+GGG 0.589545 2_2:+70593244 None:intergenic
AAACCACAGTGAAGACAACC+GGG 0.596707 2_2:-70593026 Msa0269220:CDS
GCTCACAAATTTGAGCTCGT+AGG 0.603423 2_2:-70593221 Msa0269220:intron
CGCGTCACCAGAGGAGATAG+AGG 0.604555 2_2:-70592892 Msa0269220:CDS
GCTGTTGCTGGGCTAAATAG+AGG 0.605133 2_2:-70593772 Msa0269220:CDS
CCTGTCCAAGAGTTATAGGA+AGG 0.608009 2_2:+70593560 None:intergenic
ACATTGATGTTGTTGCTCCT+GGG 0.612390 2_2:+70594835 None:intergenic
TATAGGAAGGAGCCTTCCTG+TGG 0.615801 2_2:+70593573 None:intergenic
GTCCTGGACCTCCCACAGGA+AGG 0.617086 2_2:-70593585 Msa0269220:CDS
CCAGAAGATTGAACTTCAAG+GGG 0.618887 2_2:+70594692 None:intergenic
CCTACAAAAGGCAGATGCTG+CGG 0.625367 2_2:-70593728 Msa0269220:CDS
TGGCAACTGTGAAAATGTCC+CGG 0.625500 2_2:+70593008 None:intergenic
ACTTATCAAGGTTGTCTGTG+AGG 0.627193 2_2:+70593671 None:intergenic
TTCCTGTGGGAGGTCCAGGA+CGG 0.631302 2_2:+70593587 None:intergenic
AAGTAGAAAATGGTAGTAGG+GGG 0.633244 2_2:+70594875 None:intergenic
GGTGAGAGAGAGAAGTTGAG+GGG 0.635373 2_2:+70594896 None:intergenic
GGAATTTGAGGCAAATCTAG+AGG 0.640324 2_2:+70592985 None:intergenic
AATGTGGCAGTTACTTCAAG+GGG 0.642001 2_2:+70593245 None:intergenic
GGAAGGAGCCTTCCTGTGGG+AGG 0.648424 2_2:+70593577 None:intergenic
GCAGATACCCGCGTCACCAG+AGG 0.664329 2_2:-70592901 Msa0269220:CDS
GCTCCCACCTAGAGTACGAG+AGG 0.667203 2_2:+70593609 None:intergenic
ATTTGAGGCAAATCTAGAGG+TGG 0.671293 2_2:+70592988 None:intergenic
GTGGCAGTTACTTCAAGGGG+CGG 0.672835 2_2:+70593248 None:intergenic
ATAGGAAGGAGCCTTCCTGT+GGG 0.683855 2_2:+70593574 None:intergenic
AAGGAACTTGAAGAAGCTGG+AGG 0.698611 2_2:-70593703 Msa0269220:CDS
TGTCCCGGTTGTCTTCACTG+TGG 0.714687 2_2:+70593023 None:intergenic
CAGAAGATTGAACTTCAAGG+GGG 0.762152 2_2:+70594693 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTGCATAATAAAAAT+AGG - chr2_2:70593077-70593096 Msa0269220:intron 10.0%
!! ATAATTGCATAATAAAAATA+GGG - chr2_2:70593078-70593097 Msa0269220:intron 10.0%
!! AAAATATATAGATATAGTAT+AGG - chr2_2:70593134-70593153 Msa0269220:intron 10.0%
!! ATTGTCATTAAAATATATTT+AGG - chr2_2:70593222-70593241 Msa0269220:CDS 10.0%
!! TAATTGCATAATAAAAATAG+GGG - chr2_2:70593079-70593098 Msa0269220:intron 15.0%
!!! TATATATTTTTGTTTTGCAA+AGG + chr2_2:70593124-70593143 None:intergenic 15.0%
!! TATAAGTATTTATCATGTAA+GGG - chr2_2:70593488-70593507 Msa0269220:intron 15.0%
!! AAATATTACATCATTATATC+AGG + chr2_2:70594088-70594107 None:intergenic 15.0%
!!! TTTTTATGATAGTATTGTAT+TGG - chr2_2:70594777-70594796 Msa0269220:CDS 15.0%
!! TATAAACAAATATTCCTTTA+AGG + chr2_2:70594896-70594915 None:intergenic 15.0%
!! TGTTTATAGATAATTACATA+TGG - chr2_2:70594908-70594927 Msa0269220:CDS 15.0%
!!! AACTTTAATTTCAAAGTAAT+TGG + chr2_2:70594979-70594998 None:intergenic 15.0%
!!! CTTTTGTTTGACAAATTAAA+TGG - chr2_2:70592998-70593017 Msa0269220:CDS 20.0%
!!! ACTTAAGTATCTAAGTTTTA+TGG - chr2_2:70593181-70593200 Msa0269220:intron 20.0%
!! TGGATAAATAACTTGATTTA+GGG - chr2_2:70593252-70593271 Msa0269220:CDS 20.0%
!! GTATAAGTATTTATCATGTA+AGG - chr2_2:70593487-70593506 Msa0269220:intron 20.0%
!! GATTATGTATAAGTTGTAAA+TGG - chr2_2:70593510-70593529 Msa0269220:intron 20.0%
!!! AATAAGTTGAAAACAACTTA+TGG - chr2_2:70593581-70593600 Msa0269220:CDS 20.0%
!!! ATTATGTTTTAGTCTCATTT+CGG - chr2_2:70594173-70594192 Msa0269220:intron 20.0%
!! ATAAACATATTATTGAACAG+CGG + chr2_2:70594227-70594246 None:intergenic 20.0%
!!! CAAAGATTTTGATAATATAG+TGG - chr2_2:70594308-70594327 Msa0269220:intron 20.0%
!! TGTAACATATTTAACCTTAA+AGG - chr2_2:70594879-70594898 Msa0269220:CDS 20.0%
! AAAATAGGGGAAATAGTTAT+AGG - chr2_2:70593092-70593111 Msa0269220:intron 25.0%
! AATCAAGTTATTTATCCAGA+GGG + chr2_2:70593250-70593269 None:intergenic 25.0%
! AAATCAAGTTATTTATCCAG+AGG + chr2_2:70593251-70593270 None:intergenic 25.0%
! CTGGATAAATAACTTGATTT+AGG - chr2_2:70593251-70593270 Msa0269220:CDS 25.0%
! TAGATTATACGAAAACAGTT+TGG - chr2_2:70593365-70593384 Msa0269220:intron 25.0%
!!! ACTGTTTTGTTTTTGCTATT+AGG - chr2_2:70594260-70594279 Msa0269220:intron 25.0%
! CATTTAATATCAAAGCTGTT+AGG + chr2_2:70595042-70595061 None:intergenic 25.0%
TGTGGAAGAGATTAGATTAA+TGG + chr2_2:70592658-70592677 None:intergenic 30.0%
AGAAGTAGAAAATGGTAGTA+GGG + chr2_2:70592738-70592757 None:intergenic 30.0%
AAGAAGTAGAAAATGGTAGT+AGG + chr2_2:70592739-70592758 None:intergenic 30.0%
CAAGAACAAGAAGTAGAAAA+TGG + chr2_2:70592746-70592765 None:intergenic 30.0%
ATCAATGTTCTTACTCCAAA+GGG - chr2_2:70592788-70592807 Msa0269220:three_prime_UTR 30.0%
TCAAAAGGATTAGAAGGAAT+TGG + chr2_2:70592887-70592906 None:intergenic 30.0%
GTAGAATCAAAAGGATTAGA+AGG + chr2_2:70592893-70592912 None:intergenic 30.0%
! TTAGCTTAGCTTCTTTTCTT+TGG - chr2_2:70592958-70592977 Msa0269220:CDS 30.0%
ATCAAGTTATTTATCCAGAG+GGG + chr2_2:70593249-70593268 None:intergenic 30.0%
! AACTTGATTTAGGGTTTGTT+TGG - chr2_2:70593261-70593280 Msa0269220:CDS 30.0%
! TTTAGGGTTTGTTTGGAATT+TGG - chr2_2:70593268-70593287 Msa0269220:CDS 30.0%
! TAATCACTTGCTACACTATT+TGG - chr2_2:70593320-70593339 Msa0269220:CDS 30.0%
! AATCACTTGCTACACTATTT+GGG - chr2_2:70593321-70593340 Msa0269220:CDS 30.0%
ATAAGTTGTAAATGGTCTCA+CGG - chr2_2:70593518-70593537 Msa0269220:intron 30.0%
TTACTGTATCAGAGAGTTTA+TGG + chr2_2:70593624-70593643 None:intergenic 30.0%
!!! TGACACATTGATTTGGATTT+TGG - chr2_2:70593711-70593730 Msa0269220:CDS 30.0%
!!! CATTGATTTGGATTTTGGAA+TGG - chr2_2:70593716-70593735 Msa0269220:CDS 30.0%
AAATGAAGAAGACCTACAAA+AGG - chr2_2:70593868-70593887 Msa0269220:intron 30.0%
TTGTTCATAACTATCTTTCC+TGG - chr2_2:70594115-70594134 Msa0269220:intron 30.0%
! ATATTATTGAACAGCGGTTT+TGG + chr2_2:70594221-70594240 None:intergenic 30.0%
ATTGGAGACTAAAACTGAAA+AGG + chr2_2:70594961-70594980 None:intergenic 30.0%
GAGATATAACACAAAGTCAT+TGG - chr2_2:70595006-70595025 Msa0269220:five_prime_UTR 30.0%
!!! TCTCTTCCACACTTTTTTCA+TGG - chr2_2:70592667-70592686 Msa0269220:three_prime_UTR 35.0%
AAGTAGAAAATGGTAGTAGG+GGG + chr2_2:70592736-70592755 None:intergenic 35.0%
GAAGTAGAAAATGGTAGTAG+GGG + chr2_2:70592737-70592756 None:intergenic 35.0%
CATCAATGTTCTTACTCCAA+AGG - chr2_2:70592787-70592806 Msa0269220:three_prime_UTR 35.0%
GGCTTAATATGTTTACCCTT+TGG + chr2_2:70592806-70592825 None:intergenic 35.0%
GAAGCTGATATTTCAATCTC+TGG - chr2_2:70592854-70592873 Msa0269220:exon 35.0%
ACCAGAAGATTGAACTTCAA+GGG + chr2_2:70592920-70592939 None:intergenic 35.0%
ACTAATCATGCACTCAACAT+GGG + chr2_2:70593054-70593073 None:intergenic 35.0%
AACTAATCATGCACTCAACA+TGG + chr2_2:70593055-70593074 None:intergenic 35.0%
TCAAGTTATTTATCCAGAGG+GGG + chr2_2:70593248-70593267 None:intergenic 35.0%
ACTTGTTTGAGCTTATCTAC+TGG - chr2_2:70593295-70593314 Msa0269220:CDS 35.0%
TTGGGATAGCTTATGAAAAC+AGG - chr2_2:70593339-70593358 Msa0269220:intron 35.0%
ACTGCTTTCATAAGCTATCT+CGG - chr2_2:70593546-70593565 Msa0269220:intron 35.0%
CAACTTATGGACATGTCATA+AGG - chr2_2:70593594-70593613 Msa0269220:CDS 35.0%
AACCCTTACACAACTACATA+AGG - chr2_2:70593675-70593694 Msa0269220:CDS 35.0%
TGCCTTATGTAGTTGTGTAA+GGG + chr2_2:70593680-70593699 None:intergenic 35.0%
TTGCCTTATGTAGTTGTGTA+AGG + chr2_2:70593681-70593700 None:intergenic 35.0%
!!! TGATTTGGATTTTGGAATGG+TGG - chr2_2:70593719-70593738 Msa0269220:CDS 35.0%
ATCTTCCTTGCAACTTATCA+AGG + chr2_2:70593952-70593971 None:intergenic 35.0%
TTGATAAGTTGCAAGGAAGA+TGG - chr2_2:70593951-70593970 Msa0269220:intron 35.0%
!! TAATATAGTGGACCTTCAGT+TGG - chr2_2:70594320-70594339 Msa0269220:intron 35.0%
!! AATATAGTGGACCTTCAGTT+GGG - chr2_2:70594321-70594340 Msa0269220:intron 35.0%
TAATGTGGCAGTTACTTCAA+GGG + chr2_2:70594367-70594386 None:intergenic 35.0%
CTCAAATTTGTGAGCTAATG+TGG + chr2_2:70594382-70594401 None:intergenic 35.0%
TGCTTTCTACTGCATATACA+TGG - chr2_2:70594419-70594438 Msa0269220:intron 35.0%
CACTTAAACAAAAAAGCCCT+AGG + chr2_2:70594861-70594880 None:intergenic 35.0%
! CTTGTTCTTGTTTCTTTCCC+AGG - chr2_2:70592756-70592775 Msa0269220:three_prime_UTR 40.0%
ACATTGATGTTGTTGCTCCT+GGG + chr2_2:70592776-70592795 None:intergenic 40.0%
AACATTGATGTTGTTGCTCC+TGG + chr2_2:70592777-70592796 None:intergenic 40.0%
GCTTTCACAATAAGGGATGA+GGG + chr2_2:70592827-70592846 None:intergenic 40.0%
AGCTTTCACAATAAGGGATG+AGG + chr2_2:70592828-70592847 None:intergenic 40.0%
AGCAGCAGCTTTCACAATAA+GGG + chr2_2:70592834-70592853 None:intergenic 40.0%
AAGGGGGAAGTAGAATCAAA+AGG + chr2_2:70592902-70592921 None:intergenic 40.0%
CAGAAGATTGAACTTCAAGG+GGG + chr2_2:70592918-70592937 None:intergenic 40.0%
CCAGAAGATTGAACTTCAAG+GGG + chr2_2:70592919-70592938 None:intergenic 40.0%
GACCAGAAGATTGAACTTCA+AGG + chr2_2:70592921-70592940 None:intergenic 40.0%
AAATATATTTAGGCCCCCTC+TGG - chr2_2:70593232-70593251 Msa0269220:CDS 40.0%
ATAAGCCCGTTTATCTGAAC+AGG - chr2_2:70593451-70593470 Msa0269220:intron 40.0%
TAAGCCCGTTTATCTGAACA+GGG - chr2_2:70593452-70593471 Msa0269220:intron 40.0%
! TAGTTGTGTAAGGGTTTGCT+TGG + chr2_2:70593671-70593690 None:intergenic 40.0%
CCAAATCAATGTGTCACATC+TGG + chr2_2:70593707-70593726 None:intergenic 40.0%
! CCAGATGTGACACATTGATT+TGG - chr2_2:70593704-70593723 Msa0269220:CDS 40.0%
ACTTATCAAGGTTGTCTGTG+AGG + chr2_2:70593940-70593959 None:intergenic 40.0%
GACAACCTTGATAAGTTGCA+AGG - chr2_2:70593944-70593963 Msa0269220:intron 40.0%
AATGTGGCAGTTACTTCAAG+GGG + chr2_2:70594366-70594385 None:intergenic 40.0%
CTAATGTGGCAGTTACTTCA+AGG + chr2_2:70594368-70594387 None:intergenic 40.0%
ACAAACCACTCACAGTAAAG+AGG + chr2_2:70594522-70594541 None:intergenic 40.0%
! TGAGTGGTTTGTGATGATTC+AGG - chr2_2:70594530-70594549 Msa0269220:intron 40.0%
AAAACCACAGTGAAGACAAC+CGG - chr2_2:70594581-70594600 Msa0269220:intron 40.0%
! ATTTGAGGCAAATCTAGAGG+TGG + chr2_2:70594623-70594642 None:intergenic 40.0%
! GGAATTTGAGGCAAATCTAG+AGG + chr2_2:70594626-70594645 None:intergenic 40.0%
! CTCAATGCATCTGGAATTTG+AGG + chr2_2:70594638-70594657 None:intergenic 40.0%
CTCAAATTCCAGATGCATTG+AGG - chr2_2:70594636-70594655 Msa0269220:intron 40.0%
TTGAGGCCACAATCTAATAG+AGG - chr2_2:70594653-70594672 Msa0269220:intron 40.0%
CCACTTCCTCTATTAGATTG+TGG + chr2_2:70594662-70594681 None:intergenic 40.0%
CCACAATCTAATAGAGGAAG+TGG - chr2_2:70594659-70594678 Msa0269220:intron 40.0%
GGGAAGCCATGAAAAAAGTG+TGG + chr2_2:70592676-70592695 None:intergenic 45.0%
CAGCAGCAGCTTTCACAATA+AGG + chr2_2:70592835-70592854 None:intergenic 45.0%
CCCCTTGAAGTTCAATCTTC+TGG - chr2_2:70592916-70592935 Msa0269220:CDS 45.0%
CTTGCCCTGTTCAGATAAAC+GGG + chr2_2:70593459-70593478 None:intergenic 45.0%
GCTTGCCCTGTTCAGATAAA+CGG + chr2_2:70593460-70593479 None:intergenic 45.0%
GCTAAGGAACTTGAAGAAGC+TGG - chr2_2:70593902-70593921 Msa0269220:intron 45.0%
AAGGAACTTGAAGAAGCTGG+AGG - chr2_2:70593905-70593924 Msa0269220:intron 45.0%
AGGCTCCTTCCTATAACTCT+TGG - chr2_2:70594043-70594062 Msa0269220:intron 45.0%
CCTGTCCAAGAGTTATAGGA+AGG + chr2_2:70594051-70594070 None:intergenic 45.0%
CCTTCCTATAACTCTTGGAC+AGG - chr2_2:70594048-70594067 Msa0269220:intron 45.0%
CAGACCTGTCCAAGAGTTAT+AGG + chr2_2:70594055-70594074 None:intergenic 45.0%
GTTGTTCAGTTGCAACTTCC+AGG + chr2_2:70594136-70594155 None:intergenic 45.0%
GGAGATCAAAGCACACACAT+AGG + chr2_2:70594200-70594219 None:intergenic 45.0%
GCTCACAAATTTGAGCTCGT+AGG - chr2_2:70594387-70594406 Msa0269220:intron 45.0%
AACCACTCACAGTAAAGAGG+CGG + chr2_2:70594519-70594538 None:intergenic 45.0%
AAACCACAGTGAAGACAACC+GGG - chr2_2:70594582-70594601 Msa0269220:intron 45.0%
TGGCAACTGTGAAAATGTCC+CGG + chr2_2:70594603-70594622 None:intergenic 45.0%
GATATACCCAACCCACACTA+TGG - chr2_2:70594831-70594850 Msa0269220:CDS 45.0%
GGGGTGAAGAAGGAGATTGA+GGG + chr2_2:70592696-70592715 None:intergenic 50.0%
AGGGGTGAAGAAGGAGATTG+AGG + chr2_2:70592697-70592716 None:intergenic 50.0%
GAGAAGTTGAGGGGTGAAGA+AGG + chr2_2:70592706-70592725 None:intergenic 50.0%
GGTGAGAGAGAGAAGTTGAG+GGG + chr2_2:70592715-70592734 None:intergenic 50.0%
GGGTGAGAGAGAGAAGTTGA+GGG + chr2_2:70592716-70592735 None:intergenic 50.0%
GCTGTTGCTGGGCTAAATAG+AGG - chr2_2:70593836-70593855 Msa0269220:intron 50.0%
CCTACAAAAGGCAGATGCTG+CGG - chr2_2:70593880-70593899 Msa0269220:intron 50.0%
TTCTCCTCTCGTACTCTAGG+TGG - chr2_2:70593995-70594014 Msa0269220:intron 50.0%
TCTCCTCTCGTACTCTAGGT+GGG - chr2_2:70593996-70594015 Msa0269220:intron 50.0%
ATAGGAAGGAGCCTTCCTGT+GGG + chr2_2:70594037-70594056 None:intergenic 50.0%
TATAGGAAGGAGCCTTCCTG+TGG + chr2_2:70594038-70594057 None:intergenic 50.0%
GATTGTGGCCTCAATGCATC+TGG + chr2_2:70594647-70594666 None:intergenic 50.0%
AGGAGATAGAGGCGAGCTAA+GGG - chr2_2:70594727-70594746 Msa0269220:CDS 50.0%
GGGGTGAGAGAGAGAAGTTG+AGG + chr2_2:70592717-70592736 None:intergenic 55.0%
!! ATGCTGCAGAGTGCTGTTGC+TGG - chr2_2:70593824-70593843 Msa0269220:intron 55.0%
!! TGCTGCAGAGTGCTGTTGCT+GGG - chr2_2:70593825-70593844 Msa0269220:intron 55.0%
! CCGCAGCATCTGCCTTTTGT+AGG + chr2_2:70593883-70593902 None:intergenic 55.0%
AAAGGCAGATGCTGCGGCTA+AGG - chr2_2:70593886-70593905 Msa0269220:intron 55.0%
GCGTTCTCCTCTCGTACTCT+AGG - chr2_2:70593992-70594011 Msa0269220:intron 55.0%
ACCTTCAGTTGGGTGCTCCA+TGG - chr2_2:70594331-70594350 Msa0269220:intron 55.0%
GTTACTTCAAGGGGCGGTAG+AGG + chr2_2:70594357-70594376 None:intergenic 55.0%
GTGGCAGTTACTTCAAGGGG+CGG + chr2_2:70594363-70594382 None:intergenic 55.0%
GACCGCCTCTTTACTGTGAG+TGG - chr2_2:70594514-70594533 Msa0269220:intron 55.0%
TGTCCCGGTTGTCTTCACTG+TGG + chr2_2:70594588-70594607 None:intergenic 55.0%
! TCTATCTCCTCTGGTGACGC+GGG + chr2_2:70594717-70594736 None:intergenic 55.0%
! CTCTATCTCCTCTGGTGACG+CGG + chr2_2:70594718-70594737 None:intergenic 55.0%
TAGCTCGCCTCTATCTCCTC+TGG + chr2_2:70594726-70594745 None:intergenic 55.0%
GAGGAGATAGAGGCGAGCTA+AGG - chr2_2:70594726-70594745 Msa0269220:CDS 55.0%
GGAGCTCCATAGTGTGGGTT+GGG + chr2_2:70594840-70594859 None:intergenic 55.0%
AGGAGCTCCATAGTGTGGGT+TGG + chr2_2:70594841-70594860 None:intergenic 55.0%
ACCCACACTATGGAGCTCCT+AGG - chr2_2:70594841-70594860 Msa0269220:CDS 55.0%
CCCTAGGAGCTCCATAGTGT+GGG + chr2_2:70594845-70594864 None:intergenic 55.0%
CCCACACTATGGAGCTCCTA+GGG - chr2_2:70594842-70594861 Msa0269220:CDS 55.0%
GCTCCCACCTAGAGTACGAG+AGG + chr2_2:70594002-70594021 None:intergenic 60.0%
TTCCTGTGGGAGGTCCAGGA+CGG + chr2_2:70594024-70594043 None:intergenic 60.0%
! GCCATGGAGCACCCAACTGA+AGG + chr2_2:70594335-70594354 None:intergenic 60.0%
CGCGTCACCAGAGGAGATAG+AGG - chr2_2:70594716-70594735 Msa0269220:CDS 60.0%
GCCCTAGGAGCTCCATAGTG+TGG + chr2_2:70594846-70594865 None:intergenic 60.0%
ACTCTAGGTGGGAGCCGTCC+TGG - chr2_2:70594007-70594026 Msa0269220:intron 65.0%
GTCCTGGACCTCCCACAGGA+AGG - chr2_2:70594023-70594042 Msa0269220:intron 65.0%
AGCCTTCCTGTGGGAGGTCC+AGG + chr2_2:70594028-70594047 None:intergenic 65.0%
GGAAGGAGCCTTCCTGTGGG+AGG + chr2_2:70594034-70594053 None:intergenic 65.0%
TCAAGGGGCGGTAGAGGCCA+TGG + chr2_2:70594351-70594370 None:intergenic 65.0%
GCAGATACCCGCGTCACCAG+AGG - chr2_2:70594707-70594726 Msa0269220:CDS 65.0%
AGCCGTCCTGGACCTCCCAC+AGG - chr2_2:70594019-70594038 Msa0269220:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 70592546 70595084 70592546 ID=Msa0269220;Name=Msa0269220
chr2_2 mRNA 70592546 70595084 70592546 ID=Msa0269220-mRNA-1;Parent=Msa0269220;Name=Msa0269220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=140|1|1|1|1|1|4|318|276
chr2_2 exon 70592546 70593078 70592546 ID=Msa0269220-mRNA-1:exon:22781;Parent=Msa0269220-mRNA-1
chr2_2 exon 70593222 70593348 70593222 ID=Msa0269220-mRNA-1:exon:22780;Parent=Msa0269220-mRNA-1
chr2_2 exon 70593561 70593797 70593561 ID=Msa0269220-mRNA-1:exon:22779;Parent=Msa0269220-mRNA-1
chr2_2 exon 70594693 70595084 70594693 ID=Msa0269220-mRNA-1:exon:22778;Parent=Msa0269220-mRNA-1
chr2_2 five_prime_UTR 70594945 70595084 70594945 ID=Msa0269220-mRNA-1:five_prime_utr;Parent=Msa0269220-mRNA-1
chr2_2 CDS 70594693 70594944 70594693 ID=Msa0269220-mRNA-1:cds;Parent=Msa0269220-mRNA-1
chr2_2 CDS 70593561 70593797 70593561 ID=Msa0269220-mRNA-1:cds;Parent=Msa0269220-mRNA-1
chr2_2 CDS 70593222 70593348 70593222 ID=Msa0269220-mRNA-1:cds;Parent=Msa0269220-mRNA-1
chr2_2 CDS 70592864 70593078 70592864 ID=Msa0269220-mRNA-1:cds;Parent=Msa0269220-mRNA-1
chr2_2 three_prime_UTR 70592546 70592863 70592546 ID=Msa0269220-mRNA-1:three_prime_utr;Parent=Msa0269220-mRNA-1
Gene Sequence

>Msa0269220

ATGGCTTCCCTCAATCTCCTTCTTCACCCCTCAACTTCTCTCTCTCACCCCCTACTACCATTTTCTACTTCTTGTTCTTGTTTCTTTCCCAGGAGCAACAACATCAATGTTCTTACTCCAAAGGGTAAACATATTAAGCCCTCATCCCTTATTGTGAAAGCTGCTGCTGAAGCTGATATTTCAATCTCTGGCTCTATTCCAATTCCTTCTAATCCTTTTGATTCTACTTCCCCCTTGAAGTTCAATCTTCTGAGTGCTGTTGCTGGGCTAAATAGAGGTCTTGCTGCAAATGAAGAAGACCTACAAAAGGCAGATGCTGCGGCTAAGGAACTTGAAGAAGCTGGAGGATTAGTAGACCTCACAGACAACCTTGATAAGTTGCAAGGAAGATGGAAACTGATATATAGCAGCGCGTTCTCCTCTCGTACTCTAGGTGGGAGCCGTCCTGGACCTCCCACAGGAAGGCTCCTTCCTATAACTCTTGGACAGGTTTTTCAACGAATTGACATCTTAAGCAAAGATTTTGATAATATAGTGGACCTTCAGTTGGGTGCTCCATGGCCTCTACCGCCCCTTGAAGTAACTGCCACATTAGCTCACAAATTTGAGCTCGTAGGATCTTCGAAGATCAAGATAATATTTGAGAAAACCACAGTGAAGACAACCGGGACATTTTCACAGTTGCCACCTCTAGATTTGCCTCAAATTCCAGATGCATTGAGGCCACAATCTAATAGAGGAAGTGGTGATTTTGAAGTTACATATCTTGACGCAGATACCCGCGTCACCAGAGGAGATAGAGGCGAGCTAAGGGTCTTTGTGATTGCATAA

Protein sequence

>Msa0269220

MASLNLLLHPSTSLSHPLLPFSTSCSCFFPRSNNINVLTPKGKHIKPSSLIVKAAAEADISISGSIPIPSNPFDSTSPLKFNLLSAVAGLNRGLAANEEDLQKADAAAKELEEAGGLVDLTDNLDKLQGRWKLIYSSAFSSRTLGGSRPGPPTGRLLPITLGQVFQRIDILSKDFDNIVDLQLGAPWPLPPLEVTATLAHKFELVGSSKIKIIFEKTTVKTTGTFSQLPPLDLPQIPDALRPQSNRGSGDFEVTYLDADTRVTRGDRGELRVFVIA*