AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1380180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 97 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGGCAAAGCCTGTAAATT+TGG 0.174955 tig0020341:+10694 None:intergenic
GACAACTCTGCCAAATTTAC+AGG 0.248797 tig0020341:-10704 Msa1380180:three_prime_UTR
GATAACCAACCAATTAATAA+TGG 0.300740 tig0020341:+12128 None:intergenic
AGCGGCCCTGGTTGTTTAGA+AGG 0.307014 tig0020341:-11675 Msa1380180:CDS
ATAACCAACCAATTAATAAT+GGG 0.356894 tig0020341:+12129 None:intergenic
TGCTGATTGTATTGACTCAT+TGG 0.364781 tig0020341:+12071 None:intergenic
CTTAGAAGCAGGCATCTAAT+AGG 0.377948 tig0020341:+10870 None:intergenic
AAGGAAGTCTGGTAGAGAAC+AGG 0.414974 tig0020341:+10640 None:intergenic
TAAACACACTTCAATCCAAT+TGG 0.422548 tig0020341:+10831 None:intergenic
TCTGCTTTCAAAAGGAAGTC+TGG 0.423594 tig0020341:+10629 None:intergenic
AGACTTTACTCAGCACCAAT+TGG 0.431506 tig0020341:-10846 Msa1380180:three_prime_UTR
GTGGCGATGGCTGTTATTGT+GGG 0.438443 tig0020341:+12093 None:intergenic
CTGTGGTTTCTGCTTTCAAA+AGG 0.438538 tig0020341:+10621 None:intergenic
TGTTATTGTGGGTGGATGGA+TGG 0.439183 tig0020341:+12104 None:intergenic
AGGAATTTAACTTGTTAACT+AGG 0.439997 tig0020341:+10676 None:intergenic
CACAACAATTCAAGCGGCCC+TGG 0.453802 tig0020341:-11687 Msa1380180:CDS
CCTTGTTGCGGTGGGTAACC+TGG 0.454558 tig0020341:+11804 None:intergenic
TCCTTTCCCTCAGATGGTGG+TGG 0.458781 tig0020341:+11915 None:intergenic
GCCCTGGTTGTTTAGAAGGA+TGG 0.472180 tig0020341:-11671 Msa1380180:intron
TATCCTTCCTTTCCCTCAGA+TGG 0.481762 tig0020341:+11909 None:intergenic
TGAGGAGGATACCCTTGTGC+TGG 0.485336 tig0020341:+11762 None:intergenic
CCTTGTGCTGGGTACGGTGG+TGG 0.485759 tig0020341:+11774 None:intergenic
GGTGGCGATGGCTGTTATTG+TGG 0.488812 tig0020341:+12092 None:intergenic
GGTGGAGGTTGAGCGTATTG+AGG 0.489568 tig0020341:+11729 None:intergenic
TACCCTTGTGGTGGATAACC+TGG 0.491516 tig0020341:+11864 None:intergenic
TGCGGTGGATATCCCGGTGG+TGG 0.499451 tig0020341:+11840 None:intergenic
AAATTTGGCAGAGTTGTCCT+TGG 0.508021 tig0020341:+10709 None:intergenic
AGTAAAGTCTTCTTAGAAGC+AGG 0.517983 tig0020341:+10859 None:intergenic
TGCGGTGGGTAACCTGGTGG+TGG 0.520361 tig0020341:+11810 None:intergenic
GAACAGGGAATTGAAGAACT+AGG 0.521713 tig0020341:+10656 None:intergenic
AATTTGGCAGAGTTGTCCTT+GGG 0.524005 tig0020341:+10710 None:intergenic
ACCACAAGGGTATCCACCAC+CGG 0.524839 tig0020341:-11853 Msa1380180:CDS
TTGTGTACATGTTGAGGAGG+TGG 0.526514 tig0020341:+11711 None:intergenic
TGTGCTGGGTACGGTGGTGG+AGG 0.526803 tig0020341:+11777 None:intergenic
TATCCTTGCGGTGGATATCC+CGG 0.527607 tig0020341:+11834 None:intergenic
CCTTCCTTTCCCTCAGATGG+TGG 0.531297 tig0020341:+11912 None:intergenic
GGATACCCTTGTGCTGGGTA+CGG 0.535216 tig0020341:+11768 None:intergenic
TATTGACTCATTGGTGGCGA+TGG 0.535588 tig0020341:+12080 None:intergenic
GGAGGATATCCTTGTTGCGG+TGG 0.540273 tig0020341:+11795 None:intergenic
TCCACCACCATCTGAGGGAA+AGG 0.552545 tig0020341:-11916 Msa1380180:CDS
CCACCACCGTACCCAGCACA+AGG 0.553983 tig0020341:-11774 Msa1380180:CDS
TGGCTGTTATTGTGGGTGGA+TGG 0.554649 tig0020341:+12100 None:intergenic
AGGTTATCCACCACCATCTG+AGG 0.559673 tig0020341:-11922 Msa1380180:CDS
TGTGGTGGATAACCTGGTGG+TGG 0.559925 tig0020341:+11870 None:intergenic
TGTACATGTTGAGGAGGTGG+AGG 0.561303 tig0020341:+11714 None:intergenic
TATTGAGGAGGAGCATATTG+AGG 0.561401 tig0020341:+11744 None:intergenic
TTGTGATTGTGTACATGTTG+AGG 0.564685 tig0020341:+11705 None:intergenic
GCGATGGCTGTTATTGTGGG+TGG 0.572094 tig0020341:+12096 None:intergenic
TGATTGTATTGACTCATTGG+TGG 0.573418 tig0020341:+12074 None:intergenic
ACGTATGTACCTTGAGGCGG+TGG 0.577923 tig0020341:+12029 None:intergenic
AGCAACGACGTGTGATGATG+AGG 0.585070 tig0020341:-12228 Msa1380180:five_prime_UTR
TGAGGAGGAGCATATTGAGG+AGG 0.587033 tig0020341:+11747 None:intergenic
AACCAACCAATTAATAATGG+GGG 0.589221 tig0020341:+12131 None:intergenic
CCACCATCTGAGGGAAAGGA+AGG 0.589362 tig0020341:-11912 Msa1380180:CDS
GAGGAGGATACCCTTGTGCT+GGG 0.590232 tig0020341:+11763 None:intergenic
TACCATCCTTCTAAACAACC+AGG 0.592914 tig0020341:+11669 None:intergenic
CACAATCACAACAATTCAAG+CGG 0.593493 tig0020341:-11693 Msa1380180:CDS
TAACCAACCAATTAATAATG+GGG 0.598437 tig0020341:+12130 None:intergenic
ATACAATCAGCAACAACCAC+CGG 0.601122 tig0020341:-12060 Msa1380180:CDS
ATATGAACTAATGCTTCCCA+AGG 0.609643 tig0020341:-10726 Msa1380180:three_prime_UTR
CCACAAGGGTATCCACCACC+AGG 0.610047 tig0020341:-11882 Msa1380180:CDS
GGCGGTGGAACTCCGACCGG+TGG 0.610943 tig0020341:+12044 None:intergenic
CCAGGTTACCCACCGCAACA+AGG 0.612688 tig0020341:-11804 Msa1380180:CDS
CCGCAAGGATATCCACCACC+AGG 0.612716 tig0020341:-11822 Msa1380180:CDS
TGATTGTGTACATGTTGAGG+AGG 0.613494 tig0020341:+11708 None:intergenic
GAAAAGAAACATTCAACAAG+GGG 0.613749 tig0020341:+10760 None:intergenic
CCACAAGGGTATCCACCACC+GGG 0.617038 tig0020341:-11852 Msa1380180:CDS
TACCCTTGTGCTGGGTACGG+TGG 0.619607 tig0020341:+11771 None:intergenic
CCACCAGGTTATCCACCACA+AGG 0.620890 tig0020341:-11867 Msa1380180:CDS
TGAAAAGAAACATTCAACAA+GGG 0.621294 tig0020341:+10759 None:intergenic
TGAGGCGGTGGAACTCCGAC+CGG 0.621449 tig0020341:+12041 None:intergenic
AGGAAGTCTGGTAGAGAACA+GGG 0.622395 tig0020341:+10641 None:intergenic
GAGGATATCCTTGTTGCGGT+GGG 0.626505 tig0020341:+11796 None:intergenic
ATGAAAAGAAACATTCAACA+AGG 0.629147 tig0020341:+10758 None:intergenic
GTCGGAGTTCCACCGCCTCA+AGG 0.629477 tig0020341:-12038 Msa1380180:intron
GGTTATCCACCACCATCTGA+GGG 0.630213 tig0020341:-11921 Msa1380180:CDS
GGTGGAGGATATCCTTGTTG+CGG 0.632248 tig0020341:+11792 None:intergenic
GGAGGTTGAGCGTATTGAGG+AGG 0.640612 tig0020341:+11732 None:intergenic
CCCGGTGGTGGATACCCTTG+TGG 0.642582 tig0020341:+11852 None:intergenic
ACCAACCAATTAATAATGGG+GGG 0.648041 tig0020341:+12132 None:intergenic
GGTGGTGGATATCCTTGCGG+TGG 0.654213 tig0020341:+11825 None:intergenic
CCACCGGGATATCCACCGCA+AGG 0.661322 tig0020341:-11837 Msa1380180:CDS
GGTGGTGGATACCCTTGTGG+TGG 0.663533 tig0020341:+11855 None:intergenic
AAGGAAGGATATCCTCCACA+AGG 0.665100 tig0020341:-11897 Msa1380180:CDS
CCTGGTGGTGGATATCCTTG+CGG 0.684642 tig0020341:+11822 None:intergenic
CCTGGTGGTGGATACCCTTG+TGG 0.689600 tig0020341:+11882 None:intergenic
CACCACCGTACCCAGCACAA+GGG 0.689874 tig0020341:-11773 Msa1380180:CDS
AATCAGCAACAACCACCGGT+CGG 0.690924 tig0020341:-12056 Msa1380180:CDS
ATTACGTATGTACCTTGAGG+CGG 0.695338 tig0020341:+12026 None:intergenic
ACCATCCTTCTAAACAACCA+GGG 0.698603 tig0020341:+11670 None:intergenic
TGTTGCGGTGGGTAACCTGG+TGG 0.703184 tig0020341:+11807 None:intergenic
TGAATGAATGAATGAACGAG+TGG 0.716730 tig0020341:+12172 None:intergenic
GGTGGTGGATACCCTTGTGG+AGG 0.717402 tig0020341:+11885 None:intergenic
CCTTGTGGTGGATAACCTGG+TGG 0.718448 tig0020341:+11867 None:intergenic
CACCAGGTTATCCACCACAA+GGG 0.720224 tig0020341:-11866 Msa1380180:CDS
CCTTGCGGTGGATATCCCGG+TGG 0.725212 tig0020341:+11837 None:intergenic
AGGAAGGATATCCTCCACAA+GGG 0.729865 tig0020341:-11896 Msa1380180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATGATTTATTTATGAAT+AGG - tig0020341:10906-10925 Msa1380180:intron 10.0%
!! TTTATGATTTATTTATGAAT+AGG - tig0020341:10906-10925 Msa1380180:intron 10.0%
!! AAGATAGAAACAAATATATT+TGG - tig0020341:11496-11515 Msa1380180:intron 15.0%
!! AAGATAGAAACAAATATATT+TGG - tig0020341:11496-11515 Msa1380180:intron 15.0%
!! ATAACCAACCAATTAATAAT+GGG + tig0020341:10722-10741 None:intergenic 20.0%
!! ACACATATATAAAACATCAA+AGG + tig0020341:11326-11345 None:intergenic 20.0%
!! ATAACCAACCAATTAATAAT+GGG + tig0020341:10722-10741 None:intergenic 20.0%
!! ACACATATATAAAACATCAA+AGG + tig0020341:11326-11345 None:intergenic 20.0%
! TAACCAACCAATTAATAATG+GGG + tig0020341:10721-10740 None:intergenic 25.0%
! GATAACCAACCAATTAATAA+TGG + tig0020341:10723-10742 None:intergenic 25.0%
! CTGATGAGAATCATAAATAT+TGG + tig0020341:11698-11717 None:intergenic 25.0%
! GTGCAAAATTTCAATTTGAT+AGG + tig0020341:11777-11796 None:intergenic 25.0%
! ATATTAAGAATTACCAGCAA+TGG + tig0020341:11803-11822 None:intergenic 25.0%
! TGAAAAGAAACATTCAACAA+GGG + tig0020341:12092-12111 None:intergenic 25.0%
! ATGAAAAGAAACATTCAACA+AGG + tig0020341:12093-12112 None:intergenic 25.0%
!!! AGGAATTTAACTTGTTAACT+AGG + tig0020341:12175-12194 None:intergenic 25.0%
! TAACCAACCAATTAATAATG+GGG + tig0020341:10721-10740 None:intergenic 25.0%
! GATAACCAACCAATTAATAA+TGG + tig0020341:10723-10742 None:intergenic 25.0%
! CTGATGAGAATCATAAATAT+TGG + tig0020341:11698-11717 None:intergenic 25.0%
! GTGCAAAATTTCAATTTGAT+AGG + tig0020341:11777-11796 None:intergenic 25.0%
! ATATTAAGAATTACCAGCAA+TGG + tig0020341:11803-11822 None:intergenic 25.0%
! TGAAAAGAAACATTCAACAA+GGG + tig0020341:12092-12111 None:intergenic 25.0%
! ATGAAAAGAAACATTCAACA+AGG + tig0020341:12093-12112 None:intergenic 25.0%
!!! AGGAATTTAACTTGTTAACT+AGG + tig0020341:12175-12194 None:intergenic 25.0%
AACCAACCAATTAATAATGG+GGG + tig0020341:10720-10739 None:intergenic 30.0%
TTAAGAATGAAAGGAATGCA+TGG + tig0020341:11245-11264 None:intergenic 30.0%
CACAAGAGATTAAGAATGAA+AGG + tig0020341:11254-11273 None:intergenic 30.0%
TATCTTCGATCTCATGTATA+TGG - tig0020341:11388-11407 Msa1380180:intron 30.0%
TCTTATTCATAAGATGAGAC+CGG - tig0020341:11466-11485 Msa1380180:intron 30.0%
! TGTTTCTATCTTACTTCATC+CGG + tig0020341:11488-11507 None:intergenic 30.0%
AACAAATATATTTGGCGTCA+TGG - tig0020341:11504-11523 Msa1380180:intron 30.0%
!!! TCCTATCTAGTTTTTGGTTT+GGG + tig0020341:11570-11589 None:intergenic 30.0%
AATACTTCATGTTCATGTCA+TGG - tig0020341:11832-11851 Msa1380180:CDS 30.0%
ACTTGTTTGCGTTTGTATAT+TGG - tig0020341:11926-11945 Msa1380180:intron 30.0%
TAAACACACTTCAATCCAAT+TGG + tig0020341:12020-12039 None:intergenic 30.0%
GAAAAGAAACATTCAACAAG+GGG + tig0020341:12091-12110 None:intergenic 30.0%
AACCAACCAATTAATAATGG+GGG + tig0020341:10720-10739 None:intergenic 30.0%
TTAAGAATGAAAGGAATGCA+TGG + tig0020341:11245-11264 None:intergenic 30.0%
CACAAGAGATTAAGAATGAA+AGG + tig0020341:11254-11273 None:intergenic 30.0%
TATCTTCGATCTCATGTATA+TGG - tig0020341:11388-11407 Msa1380180:intron 30.0%
TCTTATTCATAAGATGAGAC+CGG - tig0020341:11466-11485 Msa1380180:intron 30.0%
! TGTTTCTATCTTACTTCATC+CGG + tig0020341:11488-11507 None:intergenic 30.0%
AACAAATATATTTGGCGTCA+TGG - tig0020341:11504-11523 Msa1380180:intron 30.0%
!!! TCCTATCTAGTTTTTGGTTT+GGG + tig0020341:11570-11589 None:intergenic 30.0%
AATACTTCATGTTCATGTCA+TGG - tig0020341:11832-11851 Msa1380180:CDS 30.0%
ACTTGTTTGCGTTTGTATAT+TGG - tig0020341:11926-11945 Msa1380180:intron 30.0%
TAAACACACTTCAATCCAAT+TGG + tig0020341:12020-12039 None:intergenic 30.0%
GAAAAGAAACATTCAACAAG+GGG + tig0020341:12091-12110 None:intergenic 30.0%
TGAATGAATGAATGAACGAG+TGG + tig0020341:10679-10698 None:intergenic 35.0%
! ACCAACCAATTAATAATGGG+GGG + tig0020341:10719-10738 None:intergenic 35.0%
!! TGATTGTATTGACTCATTGG+TGG + tig0020341:10777-10796 None:intergenic 35.0%
!! TGCTGATTGTATTGACTCAT+TGG + tig0020341:10780-10799 None:intergenic 35.0%
ATGATTACGTATGTACCTTG+AGG + tig0020341:10828-10847 None:intergenic 35.0%
TTGTGATTGTGTACATGTTG+AGG + tig0020341:11146-11165 None:intergenic 35.0%
CACAATCACAACAATTCAAG+CGG - tig0020341:11155-11174 Msa1380180:intron 35.0%
TTGAAATGCGTGTGAATAGT+AGG - tig0020341:11352-11371 Msa1380180:intron 35.0%
! TATGGTGTCAGTAATCTGTT+AGG - tig0020341:11529-11548 Msa1380180:intron 35.0%
!!! CTCCTATCTAGTTTTTGGTT+TGG + tig0020341:11571-11590 None:intergenic 35.0%
TAAAACACACGAAGTTTGTG+TGG + tig0020341:11632-11651 None:intergenic 35.0%
! AATTTTGCACATTCCATTGC+TGG - tig0020341:11787-11806 Msa1380180:CDS 35.0%
AGTAAAGTCTTCTTAGAAGC+AGG + tig0020341:11992-12011 None:intergenic 35.0%
ATATGAACTAATGCTTCCCA+AGG - tig0020341:12122-12141 Msa1380180:five_prime_UTR 35.0%
TGAATGAATGAATGAACGAG+TGG + tig0020341:10679-10698 None:intergenic 35.0%
! ACCAACCAATTAATAATGGG+GGG + tig0020341:10719-10738 None:intergenic 35.0%
!! TGATTGTATTGACTCATTGG+TGG + tig0020341:10777-10796 None:intergenic 35.0%
!! TGCTGATTGTATTGACTCAT+TGG + tig0020341:10780-10799 None:intergenic 35.0%
ATGATTACGTATGTACCTTG+AGG + tig0020341:10828-10847 None:intergenic 35.0%
TTGTGATTGTGTACATGTTG+AGG + tig0020341:11146-11165 None:intergenic 35.0%
CACAATCACAACAATTCAAG+CGG - tig0020341:11155-11174 Msa1380180:intron 35.0%
TTGAAATGCGTGTGAATAGT+AGG - tig0020341:11352-11371 Msa1380180:intron 35.0%
! TATGGTGTCAGTAATCTGTT+AGG - tig0020341:11529-11548 Msa1380180:intron 35.0%
!!! CTCCTATCTAGTTTTTGGTT+TGG + tig0020341:11571-11590 None:intergenic 35.0%
TAAAACACACGAAGTTTGTG+TGG + tig0020341:11632-11651 None:intergenic 35.0%
! AATTTTGCACATTCCATTGC+TGG - tig0020341:11787-11806 Msa1380180:CDS 35.0%
AGTAAAGTCTTCTTAGAAGC+AGG + tig0020341:11992-12011 None:intergenic 35.0%
ATATGAACTAATGCTTCCCA+AGG - tig0020341:12122-12141 Msa1380180:five_prime_UTR 35.0%
ACCCCCCATTATTAATTGGT+TGG - tig0020341:10715-10734 Msa1380180:three_prime_UTR 40.0%
ATACAATCAGCAACAACCAC+CGG - tig0020341:10788-10807 Msa1380180:three_prime_UTR 40.0%
ATTACGTATGTACCTTGAGG+CGG + tig0020341:10825-10844 None:intergenic 40.0%
! TATTGAGGAGGAGCATATTG+AGG + tig0020341:11107-11126 None:intergenic 40.0%
TGATTGTGTACATGTTGAGG+AGG + tig0020341:11143-11162 None:intergenic 40.0%
ACCATCCTTCTAAACAACCA+GGG + tig0020341:11181-11200 None:intergenic 40.0%
TACCATCCTTCTAAACAACC+AGG + tig0020341:11182-11201 None:intergenic 40.0%
TTTGTCAAGCAGATCCGATT+CGG + tig0020341:11291-11310 None:intergenic 40.0%
ATATTTGGCGTCATGGCATA+TGG - tig0020341:11511-11530 Msa1380180:intron 40.0%
GCCCAAACCAAAAACTAGAT+AGG - tig0020341:11566-11585 Msa1380180:intron 40.0%
!!! AGGCTCTCCTATCTAGTTTT+TGG + tig0020341:11576-11595 None:intergenic 40.0%
AACTAGATAGGAGAGCCTAA+TGG - tig0020341:11578-11597 Msa1380180:intron 40.0%
! TGCTCTTAGGTTGCAAATCA+AGG - tig0020341:11606-11625 Msa1380180:intron 40.0%
CATGTTCATGTCATGGTAGA+CGG - tig0020341:11839-11858 Msa1380180:CDS 40.0%
AACGCAAACAAGTTAGTGAG+TGG + tig0020341:11919-11938 None:intergenic 40.0%
CTTAGAAGCAGGCATCTAAT+AGG + tig0020341:11981-12000 None:intergenic 40.0%
AGACTTTACTCAGCACCAAT+TGG - tig0020341:12002-12021 Msa1380180:intron 40.0%
AATTTGGCAGAGTTGTCCTT+GGG + tig0020341:12141-12160 None:intergenic 40.0%
AAATTTGGCAGAGTTGTCCT+TGG + tig0020341:12142-12161 None:intergenic 40.0%
GACAACTCTGCCAAATTTAC+AGG - tig0020341:12144-12163 Msa1380180:five_prime_UTR 40.0%
CTAGGCAAAGCCTGTAAATT+TGG + tig0020341:12157-12176 None:intergenic 40.0%
GAACAGGGAATTGAAGAACT+AGG + tig0020341:12195-12214 None:intergenic 40.0%
TCTGCTTTCAAAAGGAAGTC+TGG + tig0020341:12222-12241 None:intergenic 40.0%
CTGTGGTTTCTGCTTTCAAA+AGG + tig0020341:12230-12249 None:intergenic 40.0%
ACCCCCCATTATTAATTGGT+TGG - tig0020341:10715-10734 Msa1380180:three_prime_UTR 40.0%
ATACAATCAGCAACAACCAC+CGG - tig0020341:10788-10807 Msa1380180:three_prime_UTR 40.0%
ATTACGTATGTACCTTGAGG+CGG + tig0020341:10825-10844 None:intergenic 40.0%
! TATTGAGGAGGAGCATATTG+AGG + tig0020341:11107-11126 None:intergenic 40.0%
TGATTGTGTACATGTTGAGG+AGG + tig0020341:11143-11162 None:intergenic 40.0%
ACCATCCTTCTAAACAACCA+GGG + tig0020341:11181-11200 None:intergenic 40.0%
TACCATCCTTCTAAACAACC+AGG + tig0020341:11182-11201 None:intergenic 40.0%
TTTGTCAAGCAGATCCGATT+CGG + tig0020341:11291-11310 None:intergenic 40.0%
ATATTTGGCGTCATGGCATA+TGG - tig0020341:11511-11530 Msa1380180:intron 40.0%
GCCCAAACCAAAAACTAGAT+AGG - tig0020341:11566-11585 Msa1380180:intron 40.0%
!!! AGGCTCTCCTATCTAGTTTT+TGG + tig0020341:11576-11595 None:intergenic 40.0%
AACTAGATAGGAGAGCCTAA+TGG - tig0020341:11578-11597 Msa1380180:intron 40.0%
! TGCTCTTAGGTTGCAAATCA+AGG - tig0020341:11606-11625 Msa1380180:intron 40.0%
CATGTTCATGTCATGGTAGA+CGG - tig0020341:11839-11858 Msa1380180:CDS 40.0%
AACGCAAACAAGTTAGTGAG+TGG + tig0020341:11919-11938 None:intergenic 40.0%
CTTAGAAGCAGGCATCTAAT+AGG + tig0020341:11981-12000 None:intergenic 40.0%
AGACTTTACTCAGCACCAAT+TGG - tig0020341:12002-12021 Msa1380180:intron 40.0%
AATTTGGCAGAGTTGTCCTT+GGG + tig0020341:12141-12160 None:intergenic 40.0%
AAATTTGGCAGAGTTGTCCT+TGG + tig0020341:12142-12161 None:intergenic 40.0%
GACAACTCTGCCAAATTTAC+AGG - tig0020341:12144-12163 Msa1380180:five_prime_UTR 40.0%
CTAGGCAAAGCCTGTAAATT+TGG + tig0020341:12157-12176 None:intergenic 40.0%
GAACAGGGAATTGAAGAACT+AGG + tig0020341:12195-12214 None:intergenic 40.0%
TCTGCTTTCAAAAGGAAGTC+TGG + tig0020341:12222-12241 None:intergenic 40.0%
CTGTGGTTTCTGCTTTCAAA+AGG + tig0020341:12230-12249 None:intergenic 40.0%
GCACACCCCCCATTATTAAT+TGG - tig0020341:10711-10730 Msa1380180:three_prime_UTR 45.0%
TGTTATTGTGGGTGGATGGA+TGG + tig0020341:10747-10766 None:intergenic 45.0%
!! TATTGACTCATTGGTGGCGA+TGG + tig0020341:10771-10790 None:intergenic 45.0%
TATCCTTCCTTTCCCTCAGA+TGG + tig0020341:10942-10961 None:intergenic 45.0%
AAGGAAGGATATCCTCCACA+AGG - tig0020341:10951-10970 Msa1380180:intron 45.0%
AGGAAGGATATCCTCCACAA+GGG - tig0020341:10952-10971 Msa1380180:intron 45.0%
TTGTGTACATGTTGAGGAGG+TGG + tig0020341:11140-11159 None:intergenic 45.0%
ATGCATGCATGGATGAGAGA+GGG + tig0020341:11222-11241 None:intergenic 45.0%
!! CCTAAGAGCACTAAGCCATT+AGG + tig0020341:11596-11615 None:intergenic 45.0%
CCTAATGGCTTAGTGCTCTT+AGG - tig0020341:11593-11612 Msa1380180:intron 45.0%
AGGAAGTCTGGTAGAGAACA+GGG + tig0020341:12210-12229 None:intergenic 45.0%
AAGGAAGTCTGGTAGAGAAC+AGG + tig0020341:12211-12230 None:intergenic 45.0%
GCACACCCCCCATTATTAAT+TGG - tig0020341:10711-10730 Msa1380180:three_prime_UTR 45.0%
TGTTATTGTGGGTGGATGGA+TGG + tig0020341:10747-10766 None:intergenic 45.0%
!! TATTGACTCATTGGTGGCGA+TGG + tig0020341:10771-10790 None:intergenic 45.0%
TATCCTTCCTTTCCCTCAGA+TGG + tig0020341:10942-10961 None:intergenic 45.0%
AAGGAAGGATATCCTCCACA+AGG - tig0020341:10951-10970 Msa1380180:intron 45.0%
AGGAAGGATATCCTCCACAA+GGG - tig0020341:10952-10971 Msa1380180:intron 45.0%
TTGTGTACATGTTGAGGAGG+TGG + tig0020341:11140-11159 None:intergenic 45.0%
ATGCATGCATGGATGAGAGA+GGG + tig0020341:11222-11241 None:intergenic 45.0%
!! CCTAAGAGCACTAAGCCATT+AGG + tig0020341:11596-11615 None:intergenic 45.0%
CCTAATGGCTTAGTGCTCTT+AGG - tig0020341:11593-11612 Msa1380180:intron 45.0%
AGGAAGTCTGGTAGAGAACA+GGG + tig0020341:12210-12229 None:intergenic 45.0%
AAGGAAGTCTGGTAGAGAAC+AGG + tig0020341:12211-12230 None:intergenic 45.0%
! AGCAACGACGTGTGATGATG+AGG - tig0020341:10620-10639 Msa1380180:three_prime_UTR 50.0%
! TAATAATGGGGGGTGTGCGT+GGG + tig0020341:10709-10728 None:intergenic 50.0%
! TTAATAATGGGGGGTGTGCG+TGG + tig0020341:10710-10729 None:intergenic 50.0%
TGGCTGTTATTGTGGGTGGA+TGG + tig0020341:10751-10770 None:intergenic 50.0%
GTGGCGATGGCTGTTATTGT+GGG + tig0020341:10758-10777 None:intergenic 50.0%
AATCAGCAACAACCACCGGT+CGG - tig0020341:10792-10811 Msa1380180:three_prime_UTR 50.0%
AGGTTATCCACCACCATCTG+AGG - tig0020341:10926-10945 Msa1380180:intron 50.0%
GGTTATCCACCACCATCTGA+GGG - tig0020341:10927-10946 Msa1380180:intron 50.0%
CACCAGGTTATCCACCACAA+GGG - tig0020341:10982-11001 Msa1380180:intron 50.0%
!! TACCCTTGTGGTGGATAACC+TGG + tig0020341:10987-11006 None:intergenic 50.0%
TATCCTTGCGGTGGATATCC+CGG + tig0020341:11017-11036 None:intergenic 50.0%
GAGGATATCCTTGTTGCGGT+GGG + tig0020341:11055-11074 None:intergenic 50.0%
GGTGGAGGATATCCTTGTTG+CGG + tig0020341:11059-11078 None:intergenic 50.0%
! TGAGGAGGAGCATATTGAGG+AGG + tig0020341:11104-11123 None:intergenic 50.0%
TGTACATGTTGAGGAGGTGG+AGG + tig0020341:11137-11156 None:intergenic 50.0%
GCCCTGGTTGTTTAGAAGGA+TGG - tig0020341:11177-11196 Msa1380180:intron 50.0%
GATGCATGCATGGATGAGAG+AGG + tig0020341:11223-11242 None:intergenic 50.0%
GGAATGCATGGATGCATGCA+TGG + tig0020341:11233-11252 None:intergenic 50.0%
! AGCAACGACGTGTGATGATG+AGG - tig0020341:10620-10639 Msa1380180:three_prime_UTR 50.0%
! TAATAATGGGGGGTGTGCGT+GGG + tig0020341:10709-10728 None:intergenic 50.0%
! TTAATAATGGGGGGTGTGCG+TGG + tig0020341:10710-10729 None:intergenic 50.0%
TGGCTGTTATTGTGGGTGGA+TGG + tig0020341:10751-10770 None:intergenic 50.0%
GTGGCGATGGCTGTTATTGT+GGG + tig0020341:10758-10777 None:intergenic 50.0%
AATCAGCAACAACCACCGGT+CGG - tig0020341:10792-10811 Msa1380180:three_prime_UTR 50.0%
AGGTTATCCACCACCATCTG+AGG - tig0020341:10926-10945 Msa1380180:intron 50.0%
GGTTATCCACCACCATCTGA+GGG - tig0020341:10927-10946 Msa1380180:intron 50.0%
CACCAGGTTATCCACCACAA+GGG - tig0020341:10982-11001 Msa1380180:intron 50.0%
!! TACCCTTGTGGTGGATAACC+TGG + tig0020341:10987-11006 None:intergenic 50.0%
TATCCTTGCGGTGGATATCC+CGG + tig0020341:11017-11036 None:intergenic 50.0%
GAGGATATCCTTGTTGCGGT+GGG + tig0020341:11055-11074 None:intergenic 50.0%
GGTGGAGGATATCCTTGTTG+CGG + tig0020341:11059-11078 None:intergenic 50.0%
! TGAGGAGGAGCATATTGAGG+AGG + tig0020341:11104-11123 None:intergenic 50.0%
TGTACATGTTGAGGAGGTGG+AGG + tig0020341:11137-11156 None:intergenic 50.0%
GCCCTGGTTGTTTAGAAGGA+TGG - tig0020341:11177-11196 Msa1380180:intron 50.0%
GATGCATGCATGGATGAGAG+AGG + tig0020341:11223-11242 None:intergenic 50.0%
GGAATGCATGGATGCATGCA+TGG + tig0020341:11233-11252 None:intergenic 50.0%
GCGATGGCTGTTATTGTGGG+TGG + tig0020341:10755-10774 None:intergenic 55.0%
GGTGGCGATGGCTGTTATTG+TGG + tig0020341:10759-10778 None:intergenic 55.0%
ACGTATGTACCTTGAGGCGG+TGG + tig0020341:10822-10841 None:intergenic 55.0%
TCCACCACCATCTGAGGGAA+AGG - tig0020341:10932-10951 Msa1380180:intron 55.0%
! TCCTTTCCCTCAGATGGTGG+TGG + tig0020341:10936-10955 None:intergenic 55.0%
CCTTCCTTTCCCTCAGATGG+TGG + tig0020341:10939-10958 None:intergenic 55.0%
CCACCATCTGAGGGAAAGGA+AGG - tig0020341:10936-10955 Msa1380180:intron 55.0%
!! TGTGGTGGATAACCTGGTGG+TGG + tig0020341:10981-11000 None:intergenic 55.0%
!! CCTTGTGGTGGATAACCTGG+TGG + tig0020341:10984-11003 None:intergenic 55.0%
CCACCAGGTTATCCACCACA+AGG - tig0020341:10981-11000 Msa1380180:intron 55.0%
!! ACCACAAGGGTATCCACCAC+CGG - tig0020341:10995-11014 Msa1380180:intron 55.0%
!! CCTGGTGGTGGATATCCTTG+CGG + tig0020341:11029-11048 None:intergenic 55.0%
GGAGGATATCCTTGTTGCGG+TGG + tig0020341:11056-11075 None:intergenic 55.0%
GGATACCCTTGTGCTGGGTA+CGG + tig0020341:11083-11102 None:intergenic 55.0%
GAGGAGGATACCCTTGTGCT+GGG + tig0020341:11088-11107 None:intergenic 55.0%
TGAGGAGGATACCCTTGTGC+TGG + tig0020341:11089-11108 None:intergenic 55.0%
GGAGGTTGAGCGTATTGAGG+AGG + tig0020341:11119-11138 None:intergenic 55.0%
GGTGGAGGTTGAGCGTATTG+AGG + tig0020341:11122-11141 None:intergenic 55.0%
CACAACAATTCAAGCGGCCC+TGG - tig0020341:11161-11180 Msa1380180:intron 55.0%
AGCGGCCCTGGTTGTTTAGA+AGG - tig0020341:11173-11192 Msa1380180:intron 55.0%
!! TCAAGCAGATCCGATTCGGC+GGG + tig0020341:11287-11306 None:intergenic 55.0%
!! GTCAAGCAGATCCGATTCGG+CGG + tig0020341:11288-11307 None:intergenic 55.0%
GCGATGGCTGTTATTGTGGG+TGG + tig0020341:10755-10774 None:intergenic 55.0%
GGTGGCGATGGCTGTTATTG+TGG + tig0020341:10759-10778 None:intergenic 55.0%
ACGTATGTACCTTGAGGCGG+TGG + tig0020341:10822-10841 None:intergenic 55.0%
TCCACCACCATCTGAGGGAA+AGG - tig0020341:10932-10951 Msa1380180:intron 55.0%
! TCCTTTCCCTCAGATGGTGG+TGG + tig0020341:10936-10955 None:intergenic 55.0%
CCTTCCTTTCCCTCAGATGG+TGG + tig0020341:10939-10958 None:intergenic 55.0%
CCACCATCTGAGGGAAAGGA+AGG - tig0020341:10936-10955 Msa1380180:intron 55.0%
!! TGTGGTGGATAACCTGGTGG+TGG + tig0020341:10981-11000 None:intergenic 55.0%
!! CCTTGTGGTGGATAACCTGG+TGG + tig0020341:10984-11003 None:intergenic 55.0%
CCACCAGGTTATCCACCACA+AGG - tig0020341:10981-11000 Msa1380180:intron 55.0%
!! ACCACAAGGGTATCCACCAC+CGG - tig0020341:10995-11014 Msa1380180:intron 55.0%
!! CCTGGTGGTGGATATCCTTG+CGG + tig0020341:11029-11048 None:intergenic 55.0%
GGAGGATATCCTTGTTGCGG+TGG + tig0020341:11056-11075 None:intergenic 55.0%
GGATACCCTTGTGCTGGGTA+CGG + tig0020341:11083-11102 None:intergenic 55.0%
GAGGAGGATACCCTTGTGCT+GGG + tig0020341:11088-11107 None:intergenic 55.0%
TGAGGAGGATACCCTTGTGC+TGG + tig0020341:11089-11108 None:intergenic 55.0%
GGAGGTTGAGCGTATTGAGG+AGG + tig0020341:11119-11138 None:intergenic 55.0%
GGTGGAGGTTGAGCGTATTG+AGG + tig0020341:11122-11141 None:intergenic 55.0%
CACAACAATTCAAGCGGCCC+TGG - tig0020341:11161-11180 Msa1380180:intron 55.0%
AGCGGCCCTGGTTGTTTAGA+AGG - tig0020341:11173-11192 Msa1380180:intron 55.0%
!! TCAAGCAGATCCGATTCGGC+GGG + tig0020341:11287-11306 None:intergenic 55.0%
!! GTCAAGCAGATCCGATTCGG+CGG + tig0020341:11288-11307 None:intergenic 55.0%
!! GGTGGTGGATACCCTTGTGG+AGG + tig0020341:10966-10985 None:intergenic 60.0%
!! CCTGGTGGTGGATACCCTTG+TGG + tig0020341:10969-10988 None:intergenic 60.0%
!! CCACAAGGGTATCCACCACC+AGG - tig0020341:10966-10985 Msa1380180:intron 60.0%
!! GGTGGTGGATACCCTTGTGG+TGG + tig0020341:10966-10985 None:intergenic 60.0%
!! CCACAAGGGTATCCACCACC+GGG - tig0020341:10966-10985 Msa1380180:intron 60.0%
!! GGTGGTGGATATCCTTGCGG+TGG + tig0020341:11026-11045 None:intergenic 60.0%
CCGCAAGGATATCCACCACC+AGG - tig0020341:11026-11045 Msa1380180:intron 60.0%
TGTTGCGGTGGGTAACCTGG+TGG + tig0020341:11044-11063 None:intergenic 60.0%
CCTTGTTGCGGTGGGTAACC+TGG + tig0020341:11047-11066 None:intergenic 60.0%
CCAGGTTACCCACCGCAACA+AGG - tig0020341:11044-11063 Msa1380180:intron 60.0%
CACCACCGTACCCAGCACAA+GGG - tig0020341:11075-11094 Msa1380180:intron 60.0%
TACCCTTGTGCTGGGTACGG+TGG + tig0020341:11080-11099 None:intergenic 60.0%
TCTCGTTCTGCCCGCCGAAT+CGG - tig0020341:11274-11293 Msa1380180:intron 60.0%
!! GGTGGTGGATACCCTTGTGG+AGG + tig0020341:10966-10985 None:intergenic 60.0%
!! CCTGGTGGTGGATACCCTTG+TGG + tig0020341:10969-10988 None:intergenic 60.0%
!! CCACAAGGGTATCCACCACC+AGG - tig0020341:10966-10985 Msa1380180:intron 60.0%
!! GGTGGTGGATACCCTTGTGG+TGG + tig0020341:10966-10985 None:intergenic 60.0%
!! CCACAAGGGTATCCACCACC+GGG - tig0020341:10966-10985 Msa1380180:intron 60.0%
!! GGTGGTGGATATCCTTGCGG+TGG + tig0020341:11026-11045 None:intergenic 60.0%
CCGCAAGGATATCCACCACC+AGG - tig0020341:11026-11045 Msa1380180:intron 60.0%
TGTTGCGGTGGGTAACCTGG+TGG + tig0020341:11044-11063 None:intergenic 60.0%
CCTTGTTGCGGTGGGTAACC+TGG + tig0020341:11047-11066 None:intergenic 60.0%
CCAGGTTACCCACCGCAACA+AGG - tig0020341:11044-11063 Msa1380180:intron 60.0%
CACCACCGTACCCAGCACAA+GGG - tig0020341:11075-11094 Msa1380180:intron 60.0%
TACCCTTGTGCTGGGTACGG+TGG + tig0020341:11080-11099 None:intergenic 60.0%
TCTCGTTCTGCCCGCCGAAT+CGG - tig0020341:11274-11293 Msa1380180:intron 60.0%
! TAATGGGGGGTGTGCGTGGG+TGG + tig0020341:10706-10725 None:intergenic 65.0%
TGAGGCGGTGGAACTCCGAC+CGG + tig0020341:10810-10829 None:intergenic 65.0%
GTCGGAGTTCCACCGCCTCA+AGG - tig0020341:10810-10829 Msa1380180:three_prime_UTR 65.0%
!! CCCGGTGGTGGATACCCTTG+TGG + tig0020341:10999-11018 None:intergenic 65.0%
TGCGGTGGATATCCCGGTGG+TGG + tig0020341:11011-11030 None:intergenic 65.0%
CCTTGCGGTGGATATCCCGG+TGG + tig0020341:11014-11033 None:intergenic 65.0%
CCACCGGGATATCCACCGCA+AGG - tig0020341:11011-11030 Msa1380180:intron 65.0%
TGCGGTGGGTAACCTGGTGG+TGG + tig0020341:11041-11060 None:intergenic 65.0%
! TGTGCTGGGTACGGTGGTGG+AGG + tig0020341:11074-11093 None:intergenic 65.0%
CCTTGTGCTGGGTACGGTGG+TGG + tig0020341:11077-11096 None:intergenic 65.0%
CCACCACCGTACCCAGCACA+AGG - tig0020341:11074-11093 Msa1380180:intron 65.0%
! TAATGGGGGGTGTGCGTGGG+TGG + tig0020341:10706-10725 None:intergenic 65.0%
TGAGGCGGTGGAACTCCGAC+CGG + tig0020341:10810-10829 None:intergenic 65.0%
GTCGGAGTTCCACCGCCTCA+AGG - tig0020341:10810-10829 Msa1380180:three_prime_UTR 65.0%
!! CCCGGTGGTGGATACCCTTG+TGG + tig0020341:10999-11018 None:intergenic 65.0%
TGCGGTGGATATCCCGGTGG+TGG + tig0020341:11011-11030 None:intergenic 65.0%
CCTTGCGGTGGATATCCCGG+TGG + tig0020341:11014-11033 None:intergenic 65.0%
CCACCGGGATATCCACCGCA+AGG - tig0020341:11011-11030 Msa1380180:intron 65.0%
TGCGGTGGGTAACCTGGTGG+TGG + tig0020341:11041-11060 None:intergenic 65.0%
! TGTGCTGGGTACGGTGGTGG+AGG + tig0020341:11074-11093 None:intergenic 65.0%
CCTTGTGCTGGGTACGGTGG+TGG + tig0020341:11077-11096 None:intergenic 65.0%
CCACCACCGTACCCAGCACA+AGG - tig0020341:11074-11093 Msa1380180:intron 65.0%
GGCGGTGGAACTCCGACCGG+TGG + tig0020341:10807-10826 None:intergenic 75.0%
GGCGGTGGAACTCCGACCGG+TGG + tig0020341:10807-10826 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0020341 gene 10615 12255 10615 ID=Msa1380180;Name=Msa1380180
tig0020341 mRNA 10615 12255 10615 ID=Msa1380180-mRNA-1;Parent=Msa1380180;Name=Msa1380180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=165|1|1|1|0.5|0.66|3|256|122
tig0020341 exon 10615 10916 10615 ID=Msa1380180-mRNA-1:exon:7001;Parent=Msa1380180-mRNA-1
tig0020341 exon 11672 11942 11672 ID=Msa1380180-mRNA-1:exon:7000;Parent=Msa1380180-mRNA-1
tig0020341 exon 12039 12255 12039 ID=Msa1380180-mRNA-1:exon:6999;Parent=Msa1380180-mRNA-1
tig0020341 five_prime_UTR 12091 12255 12091 ID=Msa1380180-mRNA-1:five_prime_utr;Parent=Msa1380180-mRNA-1
tig0020341 CDS 12039 12090 12039 ID=Msa1380180-mRNA-1:cds;Parent=Msa1380180-mRNA-1
tig0020341 CDS 11672 11942 11672 ID=Msa1380180-mRNA-1:cds;Parent=Msa1380180-mRNA-1
tig0020341 CDS 10871 10916 10871 ID=Msa1380180-mRNA-1:cds;Parent=Msa1380180-mRNA-1
tig0020341 three_prime_UTR 10615 10870 10615 ID=Msa1380180-mRNA-1:three_prime_utr;Parent=Msa1380180-mRNA-1
Gene Sequence

>Msa1380180

ATGAGTCAATACAATCAGCAACAACCACCGGTCGGAGTTCCACCGCCTCAAGGTTATCCACCACCATCTGAGGGAAAGGAAGGATATCCTCCACAAGGGTATCCACCACCAGGTTATCCACCACAAGGGTATCCACCACCGGGATATCCACCGCAAGGATATCCACCACCAGGTTACCCACCGCAACAAGGATATCCTCCACCACCGTACCCAGCACAAGGGTATCCTCCTCAATATGCTCCTCCTCAATACGCTCAACCTCCACCTCCTCAACATGTACACAATCACAACAATTCAAGCGGCCCTGGTTGTTTAGAAGGATGTTGTGCTGCTCTGTGCTGCTGCTGCCTATTAGATGCCTGCTTCTAA

Protein sequence

>Msa1380180

MSQYNQQQPPVGVPPPQGYPPPSEGKEGYPPQGYPPPGYPPQGYPPPGYPPQGYPPPGYPPQQGYPPPPYPAQGYPPQYAPPQYAQPPPPQHVHNHNNSSGPGCLEGCCAALCCCCLLDACF*