AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0595530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0595530 MtrunA17_Chr4g0011301 98.363 733 12 0 2 734 3 735 0.0 1492
Msa0595530 MtrunA17_Chr1g0213271 86.873 678 89 0 56 733 57 734 0.0 1243
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0595530 AT2G45290.1 78.466 743 149 3 1 734 1 741 0.0 1213
Msa0595530 AT2G45290.2 78.466 743 149 3 1 734 1 741 0.0 1213
Msa0595530 AT3G60750.1 77.793 743 154 3 1 734 1 741 0.0 1196
Msa0595530 AT3G60750.2 77.793 743 153 4 1 734 1 740 0.0 1193

Find 234 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTTGGGTGGCATGTTATT+TGG 0.165907 4_2:-24641394 Msa0595530:CDS
TCTTGTGGCATCAACTTCTT+TGG 0.239047 4_2:+24640712 None:intergenic
TTCGGGTGGGAGAAAATTAT+TGG 0.245328 4_2:-24639455 Msa0595530:CDS
TTCTATAGGTATTGTATATT+GGG 0.257909 4_2:-24641575 Msa0595530:intron
TTTCTATAGGTATTGTATAT+TGG 0.260478 4_2:-24641576 Msa0595530:intron
ATGGTGTGTGGCGCGTGAGA+TGG 0.260609 4_2:+24644042 None:intergenic
TGGGAGTGAGGGTGCGGTTG+AGG 0.263215 4_2:+24643976 None:intergenic
TACACTGAACCAGTCCTCTT+TGG 0.274918 4_2:-24644279 Msa0595530:five_prime_UTR
GAGTTGTTTCCTTTGTTTCT+TGG 0.277523 4_2:-24639568 Msa0595530:CDS
TATGCTTTGCTTCATCTTGC+TGG 0.279540 4_2:-24643657 Msa0595530:CDS
TGGTGTGTGGCGCGTGAGAT+GGG 0.301497 4_2:+24644043 None:intergenic
TAGCGGTGTGGCGGAGGTGG+TGG 0.303014 4_2:+24643934 None:intergenic
CTGTAGGAGTTGGATTTATT+CGG 0.309810 4_2:+24640758 None:intergenic
AGTTGTTTCCTTTGTTTCTT+GGG 0.312843 4_2:-24639567 Msa0595530:CDS
ACTCTCAGTGAACGCGATTT+CGG 0.313774 4_2:+24641436 None:intergenic
GGATTGAGAGAGGTGGGTTG+TGG 0.315208 4_2:+24643956 None:intergenic
TTGTTGCTTGAATAAGAAAA+AGG 0.320449 4_2:-24639204 Msa0595530:three_prime_UTR
GTTAAACCAAAACGGATTCT+TGG 0.321996 4_2:+24643725 None:intergenic
ACTTGGGTGGCATGTTATTT+GGG 0.323384 4_2:-24641393 Msa0595530:CDS
GCAATCGGCATTGATCGTTT+TGG 0.329334 4_2:-24639419 Msa0595530:CDS
GGGCGGAGCATCAAGATATT+TGG 0.330195 4_2:+24639848 None:intergenic
AATGAAGCTTGCTCACTTGC+AGG 0.330765 4_2:-24641524 Msa0595530:CDS
TAGAGCACCTGGCAAGCTTC+CGG 0.331331 4_2:-24639877 Msa0595530:CDS
GTTGCATCGGCAGGGATCTC+TGG 0.332471 4_2:+24640262 None:intergenic
GTTCCAATCAAAATGATATC+AGG 0.333628 4_2:+24639656 None:intergenic
GAACATTCGCAAGGGCATTA+AGG 0.334104 4_2:+24640218 None:intergenic
TCGCAGTTCACAACAACTAT+TGG 0.337717 4_2:-24640791 Msa0595530:intron
CGGTTGAGGGTGATGGTGGA+TGG 0.338201 4_2:+24643990 None:intergenic
TGAAATTCGTGCTGCCATTA+AGG 0.343448 4_2:-24641345 Msa0595530:CDS
TTAAACCAAAACGGATTCTT+GGG 0.345039 4_2:+24643726 None:intergenic
GGGAGTGAGGGTGCGGTTGA+GGG 0.352013 4_2:+24643977 None:intergenic
GCCTATGGGTTGTGCTCCAT+TGG 0.352075 4_2:-24643784 Msa0595530:CDS
GCCCTTGCGAATGTTCTTCC+CGG 0.361812 4_2:-24640211 Msa0595530:CDS
GGGTCACCCTGGTTTGCCTA+TGG 0.368959 4_2:-24643799 Msa0595530:CDS
GATTGAGAGAGGTGGGTTGT+GGG 0.370133 4_2:+24643957 None:intergenic
TTCACAACAACTATTGGTTA+TGG 0.371247 4_2:-24640785 Msa0595530:CDS
TTTGTATGCAATTTCCAATT+CGG 0.377921 4_2:+24639628 None:intergenic
GATTGGAACTGGTTCCGAAT+TGG 0.381540 4_2:-24639642 Msa0595530:CDS
GGAACAATATACAAAGAGTT+TGG 0.388573 4_2:-24639380 Msa0595530:CDS
TTCTATTGAAGGAGTTGAAA+AGG 0.389406 4_2:-24639717 Msa0595530:CDS
GCATTGCCCGGAAGCTTGCC+AGG 0.390101 4_2:+24639870 None:intergenic
ATTGTCGGTCTTGTTAAATC+TGG 0.396082 4_2:+24641706 None:intergenic
GGATAGCGGTGTGGCGGAGG+TGG 0.397381 4_2:+24643931 None:intergenic
TCAAAATTCTCAGGGTGTCC+AGG 0.401020 4_2:+24641990 None:intergenic
GCTGTTTCGTTACCGTCAGC+GGG 0.402091 4_2:+24639827 None:intergenic
AGAGGTGGGTTGTGGGAGTG+AGG 0.402551 4_2:+24643964 None:intergenic
CCAGGAGTCTCAAAATTCTC+AGG 0.403498 4_2:+24641981 None:intergenic
AACTCCTTCAATAGAAGTTC+CGG 0.404053 4_2:+24639724 None:intergenic
AGAGCACCTGGCAAGCTTCC+GGG 0.404549 4_2:-24639876 Msa0595530:CDS
TGGCGATTTACCTGCTGGTT+GGG 0.404773 4_2:-24640433 Msa0595530:CDS
ACACTGAACCAGTCCTCTTT+GGG 0.406577 4_2:-24644278 Msa0595530:five_prime_UTR
GCAGAGCGTAACGTTAGATT+TGG 0.407664 4_2:-24640106 Msa0595530:CDS
CATGTTATTTGGGTAAAGAA+TGG 0.408155 4_2:-24641383 Msa0595530:CDS
CCTGTTGTGACTTCAATTCC+AGG 0.410667 4_2:+24641963 None:intergenic
AGGTTTCGGGTTGCATCGGC+AGG 0.411643 4_2:+24640253 None:intergenic
GTTGGTGAGAGAGAGGGAAG+TGG 0.411984 4_2:+24644067 None:intergenic
ATTTGAAGCAATTTCGTCAA+TGG 0.412981 4_2:-24642025 Msa0595530:CDS
ATAACCCCAAGAATCCGTTT+TGG 0.418460 4_2:-24643731 Msa0595530:CDS
CTTGCAGGACACTGGGGACT+AGG 0.424166 4_2:-24641509 Msa0595530:CDS
GAGGTGGGTTGTGGGAGTGA+GGG 0.426771 4_2:+24643965 None:intergenic
ACAAAGTTGCGGTGCTTAGC+AGG 0.427510 4_2:-24639796 Msa0595530:CDS
GACATATATAACACCGGCTT+CGG 0.430122 4_2:+24639952 None:intergenic
GAGGGTGCGGTTGAGGGTGA+TGG 0.431040 4_2:+24643983 None:intergenic
TTTGAAGCAATTTCGTCAAT+GGG 0.431071 4_2:-24642024 Msa0595530:CDS
ATTGAGGCTGGATCAACATT+CGG 0.433929 4_2:-24639473 Msa0595530:CDS
TGGTTGGGAGAAAGCACTTC+CGG 0.437142 4_2:-24640418 Msa0595530:intron
TCTAGAAAGGGCAAGGATAG+AGG 0.439993 4_2:+24639766 None:intergenic
AAGCTTGCCAGGTGCTCTAT+AGG 0.443449 4_2:+24639881 None:intergenic
TATAACACCGGCTTCGGATA+GGG 0.445320 4_2:+24639958 None:intergenic
GGCACGTGGAAAGGCTCATA+TGG 0.445479 4_2:+24640674 None:intergenic
GACAATCACATTTCTATTGA+CGG 0.446265 4_2:-24641464 Msa0595530:CDS
TTGATATATCTACACAGAAA+AGG 0.446370 4_2:-24639246 Msa0595530:three_prime_UTR
TGCTGGATATGACAGTGTTC+AGG 0.446747 4_2:-24643640 Msa0595530:intron
CATGGATAGCGGTGTGGCGG+AGG 0.447511 4_2:+24643928 None:intergenic
GGTCACCCTGGTTTGCCTAT+GGG 0.448802 4_2:-24643798 Msa0595530:CDS
AATGTTCTTCCCGGTCTGAT+TGG 0.452056 4_2:-24640202 Msa0595530:CDS
AATCTAACGTTACGCTCTGC+TGG 0.452620 4_2:+24640109 None:intergenic
ACTACATGCGTGGTGCCATT+AGG 0.453398 4_2:-24639988 Msa0595530:CDS
CGGAATCAACCGCGAGGAAA+CGG 0.453858 4_2:+24643838 None:intergenic
TGTTCTCCCTACTGCTGTTA+CGG 0.455399 4_2:-24639507 Msa0595530:CDS
ATAGAAGTTCCGGCAAGGTT+AGG 0.455709 4_2:+24639734 None:intergenic
CCCTACTGCTGTTACGGCTA+GGG 0.455847 4_2:-24639501 Msa0595530:CDS
GGTGTGTGGCGCGTGAGATG+GGG 0.457095 4_2:+24644044 None:intergenic
ATATAACACCGGCTTCGGAT+AGG 0.459608 4_2:+24639957 None:intergenic
CCTATGGGTTGTGCTCCATT+GGG 0.460828 4_2:-24643783 Msa0595530:CDS
GGGTTGTGGGAGTGAGGGTG+CGG 0.460983 4_2:+24643970 None:intergenic
TTGAGGCTGGATCAACATTC+GGG 0.461408 4_2:-24639472 Msa0595530:CDS
AAGAGAGGCGCGTGGTGGAT+GGG 0.463210 4_2:+24644018 None:intergenic
ATCGTCTCTGACAACTCAAC+AGG 0.465225 4_2:-24639686 Msa0595530:CDS
TCTTTGTATATTGTTCCTGC+AGG 0.467549 4_2:+24639386 None:intergenic
GAAAATGAGAGAGAATGAAA+AGG 0.468238 4_2:+24644147 None:intergenic
TGCTCTATAGGCTGGTGGGT+TGG 0.475899 4_2:+24639893 None:intergenic
ATGTGGCAACACAACTCAAT+TGG 0.476185 4_2:+24639085 None:intergenic
ATTGGGTGATGGTTGTCAAA+TGG 0.477289 4_2:-24641558 Msa0595530:CDS
ATCAGTGGCGATTTACCTGC+TGG 0.477834 4_2:-24640438 Msa0595530:CDS
CTTGCTCACTTGCAGGACAC+TGG 0.478425 4_2:-24641517 Msa0595530:CDS
AGCGGTGTGGCGGAGGTGGT+GGG 0.478777 4_2:+24643935 None:intergenic
CAGCTAAGTGTTTCTCTGCA+AGG 0.479238 4_2:+24641729 None:intergenic
CAGGGCATTGCCAATGCTGT+TGG 0.481434 4_2:-24641758 Msa0595530:CDS
GAAGAGAGGCGCGTGGTGGA+TGG 0.482024 4_2:+24644017 None:intergenic
GAGCAGCACCCTCACGGATG+TGG 0.483979 4_2:+24640538 None:intergenic
GGTTGACGGTGGTGCGGAGA+CGG 0.484994 4_2:+24643902 None:intergenic
CTTGCCGGAACTTCTATTGA+AGG 0.488516 4_2:-24639728 Msa0595530:CDS
GGTGCGGTTGAGGGTGATGG+TGG 0.491916 4_2:+24643986 None:intergenic
CCAGGTGCTCTATAGGCTGG+TGG 0.494759 4_2:+24639888 None:intergenic
TCTATTGAAGGAGTTGAAAA+GGG 0.494796 4_2:-24639716 Msa0595530:CDS
TTGCTCACTTGCAGGACACT+GGG 0.494803 4_2:-24641516 Msa0595530:CDS
TGAACAATCGCAAGCTTACA+AGG 0.495454 4_2:-24639534 Msa0595530:CDS
GGTTGAGGGTGATGGTGGAT+GGG 0.495802 4_2:+24643991 None:intergenic
TCCCTACTGCTGTTACGGCT+AGG 0.496011 4_2:-24639502 Msa0595530:CDS
TCAAGATATTTGGCATTGCC+CGG 0.496204 4_2:+24639858 None:intergenic
AGAGAGGCGCGTGGTGGATG+GGG 0.497322 4_2:+24644019 None:intergenic
AGGCGCGTGGTGGATGGGGA+TGG 0.501907 4_2:+24644023 None:intergenic
TTGCAGGACACTGGGGACTA+GGG 0.502548 4_2:-24641508 Msa0595530:CDS
GTGGTGGGATTGAGAGAGGT+GGG 0.502578 4_2:+24643950 None:intergenic
ATGATCGATGATCTCATTGT+CGG 0.502846 4_2:+24641691 None:intergenic
GATGAGTCTGTGGTGGTTGA+CGG 0.502862 4_2:+24643888 None:intergenic
GATGCCACAAGAAACAATCT+TGG 0.505359 4_2:-24640701 Msa0595530:CDS
CCTGGAATTGAAGTCACAAC+AGG 0.506192 4_2:-24641963 Msa0595530:intron
GTGGCGATTTACCTGCTGGT+TGG 0.506566 4_2:-24640434 Msa0595530:CDS
GTTCTTCCCGGTCTGATTGG+TGG 0.508547 4_2:-24640199 Msa0595530:CDS
GGATAGGGCGGAAAGCCTAA+TGG 0.509150 4_2:+24639973 None:intergenic
TTGCCAGGTGCTCTATAGGC+TGG 0.512357 4_2:+24639885 None:intergenic
TGATATATCTACACAGAAAA+GGG 0.512497 4_2:-24639245 Msa0595530:three_prime_UTR
TAGTTGTATTTCCTCTCAGT+TGG 0.512799 4_2:-24639016 None:intergenic
GCTCTGCTGGAGAATCACTT+TGG 0.513151 4_2:+24640122 None:intergenic
ACATCCTCGGGCACGTGGAA+AGG 0.514742 4_2:+24640665 None:intergenic
TGGTGTTAGAGAACATGGAA+TGG 0.515232 4_2:-24640086 Msa0595530:CDS
CCATCCAAGATTGTTTCTTG+TGG 0.515955 4_2:+24640697 None:intergenic
TCCATGCACACTGTAGGAGT+TGG 0.516035 4_2:+24640748 None:intergenic
TCAATAGGACTTGGAGAGGA+TGG 0.517033 4_2:-24639917 Msa0595530:CDS
AAACTAACCTTGATCAATGT+GGG 0.518234 4_2:+24641299 None:intergenic
CGATAGGTTTCGGGTTGCAT+CGG 0.518470 4_2:+24640249 None:intergenic
GTCATGACTCACGATTCAAT+AGG 0.519509 4_2:-24639932 Msa0595530:CDS
AGCTGTTTCGTTACCGTCAG+CGG 0.521906 4_2:+24639826 None:intergenic
AGATTTGGTGTTAGAGAACA+TGG 0.524137 4_2:-24640091 Msa0595530:CDS
GGTGAGGATCTAAGAAAAGA+AGG 0.525397 4_2:-24639602 Msa0595530:CDS
CAAAATTCTCAGGGTGTCCA+GGG 0.525722 4_2:+24641991 None:intergenic
GGTGTTAGAGAACATGGAAT+GGG 0.527853 4_2:-24640085 Msa0595530:CDS
TGCACTGCCACCAATCAGAC+CGG 0.530225 4_2:+24640192 None:intergenic
GCACAACCCATAGGCAAACC+AGG 0.533544 4_2:+24643792 None:intergenic
GGAGGTGGTGGGATTGAGAG+AGG 0.533897 4_2:+24643946 None:intergenic
CAGGTGCTCTATAGGCTGGT+GGG 0.534576 4_2:+24639889 None:intergenic
GGAAGCAAAGGAAAAGCAAT+CGG 0.535838 4_2:-24639434 Msa0595530:CDS
CAATGGGAGAGCAGAACCCC+TGG 0.538408 4_2:-24642008 Msa0595530:CDS
GGGTGATGGTTGTCAAATGG+AGG 0.538756 4_2:-24641555 Msa0595530:CDS
TTTCCAGGTCCTCTTGGTCA+GGG 0.542477 4_2:-24641776 Msa0595530:intron
TTGGAAATTGCATACAAAGC+TGG 0.542667 4_2:-24639623 Msa0595530:CDS
CCACCAGCCTATAGAGCACC+TGG 0.545054 4_2:-24639888 Msa0595530:CDS
AGCTAAGTGTTTCTCTGCAA+GGG 0.548265 4_2:+24641730 None:intergenic
TCCAACTCCTACAGTGTGCA+TGG 0.548707 4_2:-24640749 Msa0595530:CDS
CGATCACGGTTAAACCAAAA+CGG 0.549172 4_2:+24643717 None:intergenic
AGTGCTTTCTCCCAACCAGC+AGG 0.552628 4_2:+24640423 None:intergenic
AGACAGACCCACATTGATCA+AGG 0.553564 4_2:-24641306 Msa0595530:intron
TTGATGCTCCGCCCCGCTGA+CGG 0.553754 4_2:-24639839 Msa0595530:CDS
ACCCTAGCCGTAACAGCAGT+AGG 0.555257 4_2:+24639500 None:intergenic
GAGAAAATTATTGGAAGCAA+AGG 0.557290 4_2:-24639446 Msa0595530:CDS
GGTGGTGGGATTGAGAGAGG+TGG 0.557338 4_2:+24643949 None:intergenic
ATTGAAGGAGTTGAAAAGGG+TGG 0.558611 4_2:-24639713 Msa0595530:CDS
CTTTCCGCCCTATCCGAAGC+CGG 0.562775 4_2:-24639965 Msa0595530:CDS
TGGTGGATGGGGATGGTGTG+TGG 0.567574 4_2:+24644030 None:intergenic
CTAGAAAGGGCAAGGATAGA+GGG 0.568237 4_2:+24639767 None:intergenic
AAAACTAACCTTGATCAATG+TGG 0.568500 4_2:+24641298 None:intergenic
GGCATCGCTCTTCACAGCCG+TGG 0.571825 4_2:-24640049 Msa0595530:CDS
AGGCATGGATAGCGGTGTGG+CGG 0.572873 4_2:+24643925 None:intergenic
AAAGGAGAAAGAGAAAGTGA+AGG 0.574240 4_2:+24644165 None:intergenic
GTGTGTGGCGCGTGAGATGG+GGG 0.575332 4_2:+24644045 None:intergenic
GGCTGGATCAACATTCGGGT+GGG 0.578723 4_2:-24639468 Msa0595530:CDS
GCTAGGGTAAGCATTGAGGC+TGG 0.582656 4_2:-24639485 Msa0595530:CDS
GGTTGTCGCCCAAAGAGGAC+TGG 0.584007 4_2:+24644270 None:intergenic
TTTGGAGCTAGTGCTCCTGC+AGG 0.584179 4_2:-24639401 Msa0595530:CDS
AGGTATTGTATATTGGGTGA+TGG 0.586628 4_2:-24641569 Msa0595530:CDS
AGTGTGCATGGAAGTGCACT+TGG 0.588131 4_2:-24640737 Msa0595530:CDS
CCCTAGCCGTAACAGCAGTA+GGG 0.588657 4_2:+24639501 None:intergenic
AAGGGCTAAACCAACAGCAT+TGG 0.589425 4_2:+24641748 None:intergenic
GCTGACGGTAACGAAACAGC+TGG 0.590984 4_2:-24639824 Msa0595530:CDS
GTTGAGGTTGTCGCCCAAAG+AGG 0.597888 4_2:+24644265 None:intergenic
TGGGTAAAGAATGGAAACAC+TGG 0.598152 4_2:-24641374 Msa0595530:CDS
GACCGGGAAGAACATTCGCA+AGG 0.598309 4_2:+24640209 None:intergenic
ACTGATGATAGATTTCAAAA+CGG 0.601423 4_2:+24640455 None:intergenic
CAGGAGTCTCAAAATTCTCA+GGG 0.606114 4_2:+24641982 None:intergenic
TCATAAAGCACATGACCCAA+TGG 0.606154 4_2:+24643768 None:intergenic
AAAGCTAACTCGGGTCACCC+TGG 0.606508 4_2:-24643810 Msa0595530:CDS
ACTCACGATTCAATAGGACT+TGG 0.606593 4_2:-24639926 Msa0595530:CDS
GTGGTGCGGAGACGGAGGCA+TGG 0.609225 4_2:+24643910 None:intergenic
CCACAAGAAACAATCTTGGA+TGG 0.609450 4_2:-24640697 Msa0595530:CDS
GGTGATGGTTGTCAAATGGA+GGG 0.610444 4_2:-24641554 Msa0595530:CDS
GGGTCATGTGCTTTATGATG+AGG 0.615096 4_2:-24643763 Msa0595530:CDS
TGGAGTCGCCACATCCGTGA+GGG 0.615343 4_2:-24640546 Msa0595530:CDS
AATGGCACCACGCATGTAGT+CGG 0.615519 4_2:+24639991 None:intergenic
AGGCTGGATCAACATTCGGG+TGG 0.616054 4_2:-24639469 Msa0595530:CDS
CAGACAAAACAAACCGATCA+CGG 0.616101 4_2:+24643703 None:intergenic
TGAGCCTTTCCACGTGCCCG+AGG 0.617304 4_2:-24640669 Msa0595530:CDS
CACAGTATGGAATAAGTCCA+CGG 0.620236 4_2:+24640032 None:intergenic
ATTCAAGAGCAGCACCCTCA+CGG 0.624321 4_2:+24640532 None:intergenic
TGTGGTGGTTGACGGTGGTG+CGG 0.627299 4_2:+24643896 None:intergenic
TACGGCTAGGGTAAGCATTG+AGG 0.627403 4_2:-24639489 Msa0595530:CDS
ACCGGGAAGAACATTCGCAA+GGG 0.627406 4_2:+24640210 None:intergenic
TGACGGTGGTGCGGAGACGG+AGG 0.629060 4_2:+24643905 None:intergenic
TTGGCAATGCCCTGACCAAG+AGG 0.629391 4_2:+24641767 None:intergenic
CGATTCAATAGGACTTGGAG+AGG 0.636047 4_2:-24639921 Msa0595530:CDS
GGATCTAAGAAAAGAAGGAA+AGG 0.637691 4_2:-24639597 Msa0595530:CDS
TGAATATGAAAAGAAGTACA+AGG 0.638110 4_2:-24640487 Msa0595530:CDS
GGTTTCGGGTTGCATCGGCA+GGG 0.640091 4_2:+24640254 None:intergenic
CATTATCGAATTTAACAATG+TGG 0.641750 4_2:+24639068 None:intergenic
AGCTGGAGCATACAAAGTTG+CGG 0.643142 4_2:-24639807 Msa0595530:CDS
TTGGAGTCGCCACATCCGTG+AGG 0.643540 4_2:-24640547 Msa0595530:CDS
GTGCTGCTCTTGAATCTGAG+TGG 0.643988 4_2:-24640524 Msa0595530:CDS
CCCAATGGAGCACAACCCAT+AGG 0.645077 4_2:+24643783 None:intergenic
GGAATGGGAGCAATCAGCAA+TGG 0.647795 4_2:-24640070 Msa0595530:CDS
AACACCGGCTTCGGATAGGG+CGG 0.647980 4_2:+24639961 None:intergenic
AATTGCATACAAAGCTGGTG+AGG 0.649789 4_2:-24639618 Msa0595530:CDS
TAAACCAAAACGGATTCTTG+GGG 0.650215 4_2:+24643727 None:intergenic
TGCTCACTTGCAGGACACTG+GGG 0.650590 4_2:-24641515 Msa0595530:CDS
CTTCAATAGAAGTTCCGGCA+AGG 0.650965 4_2:+24639729 None:intergenic
TTTCGTTACCGTCAGCGGGG+CGG 0.651803 4_2:+24639831 None:intergenic
GAGAGAAGAGAGGCGCGTGG+TGG 0.652623 4_2:+24644013 None:intergenic
TGGTGGATGGGAGAGAAGAG+AGG 0.660150 4_2:+24644003 None:intergenic
GCACTGCCACCAATCAGACC+GGG 0.661485 4_2:+24640193 None:intergenic
CAACACGATCCGTTTCCTCG+CGG 0.662318 4_2:-24643847 Msa0595530:CDS
TGGGAGAGAAGAGAGGCGCG+TGG 0.663504 4_2:+24644010 None:intergenic
CTCAACGAGAGATGAGTCTG+TGG 0.664640 4_2:+24643878 None:intergenic
TGCACTTCCATGCACACTGT+AGG 0.666970 4_2:+24640742 None:intergenic
ATTTCACAATGCCAACTGAG+AGG 0.674969 4_2:+24639005 None:intergenic
AAAATTCTCAGGGTGTCCAG+GGG 0.687614 4_2:+24641992 None:intergenic
AACGAGAGATGAGTCTGTGG+TGG 0.691080 4_2:+24643881 None:intergenic
CTGTTTCGTTACCGTCAGCG+GGG 0.695547 4_2:+24639828 None:intergenic
GGAGACGGAGGCATGGATAG+CGG 0.696686 4_2:+24643917 None:intergenic
CGGAGGCATGGATAGCGGTG+TGG 0.696987 4_2:+24643922 None:intergenic
CACAACCCATAGGCAAACCA+GGG 0.699630 4_2:+24643793 None:intergenic
GAGTCTGTGGTGGTTGACGG+TGG 0.699864 4_2:+24643891 None:intergenic
AGTCATGACATATATAACAC+CGG 0.699940 4_2:+24639946 None:intergenic
TTTCAACGGAATCAACCGCG+AGG 0.765803 4_2:+24643832 None:intergenic
ATATGAAAAGAAGTACAAGG+AGG 0.782536 4_2:-24640484 Msa0595530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTAAAACAATATTTATTT+TGG + chr4_2:24642107-24642126 None:intergenic 10.0%
!!! TTTTTGCTTATAAAAAAAGA+CGG + chr4_2:24640451-24640470 None:intergenic 15.0%
!!! ACATGCATTTAATTTTATAT+TGG - chr4_2:24640626-24640645 Msa0595530:intron 15.0%
!!! GATTTTTTTGCTTATATTTT+AGG - chr4_2:24640730-24640749 Msa0595530:CDS 15.0%
!!! TATTTTCTATTTTCATGATT+AGG - chr4_2:24641413-24641432 Msa0595530:CDS 15.0%
!!! TTTTTAATAATCTTTACATG+TGG - chr4_2:24642926-24642945 Msa0595530:intron 15.0%
!! TAAGACCAAAAAAATTATCT+GGG - chr4_2:24639680-24639699 Msa0595530:CDS 20.0%
!!! TTTGTTGTGTTTATTGTTAT+GGG - chr4_2:24639732-24639751 Msa0595530:CDS 20.0%
!!! TTTGGTTGTTTTTGTTTTTT+TGG - chr4_2:24639764-24639783 Msa0595530:CDS 20.0%
!! TATATAAATATATGTCGTGT+GGG + chr4_2:24639853-24639872 None:intergenic 20.0%
!! ATATATAAATATATGTCGTG+TGG + chr4_2:24639854-24639873 None:intergenic 20.0%
!! CACAATAATAACATAAAAGT+TGG - chr4_2:24640672-24640691 Msa0595530:CDS 20.0%
!!! TTTTTGCTTATATTTTAGGA+CGG - chr4_2:24640734-24640753 Msa0595530:CDS 20.0%
!! TTCATATCTAGTAAGTAAAT+AGG - chr4_2:24640879-24640898 Msa0595530:intron 20.0%
!!! TATGAAAAGAGTGTAATATT+AGG - chr4_2:24641124-24641143 Msa0595530:intron 20.0%
!!! TGTTTTTGATCTTTGATATA+TGG - chr4_2:24641154-24641173 Msa0595530:intron 20.0%
!!! GTTTTTGATCTTTGATATAT+GGG - chr4_2:24641155-24641174 Msa0595530:intron 20.0%
!!! TATTTATTTGCCTTTTCTTT+TGG - chr4_2:24641189-24641208 Msa0595530:intron 20.0%
!!! TATGTTTTGGTTTGAATTTT+AGG - chr4_2:24641243-24641262 Msa0595530:intron 20.0%
!! ATTAAAATGAAACTCATAAC+AGG + chr4_2:24641386-24641405 None:intergenic 20.0%
!!! TTACAATACTTGTTTTCTAT+AGG - chr4_2:24641708-24641727 Msa0595530:CDS 20.0%
!!! TTTCTATAGGTATTGTATAT+TGG - chr4_2:24641721-24641740 Msa0595530:CDS 20.0%
!!! TTCTATAGGTATTGTATATT+GGG - chr4_2:24641722-24641741 Msa0595530:CDS 20.0%
!!! AATATTTATTTTGGAACTGA+GGG + chr4_2:24642098-24642117 None:intergenic 20.0%
!! CATTAATTTAGGAGTAAAAT+TGG + chr4_2:24642171-24642190 None:intergenic 20.0%
!! TTCAGTAAAATAAATCACAT+TGG + chr4_2:24642359-24642378 None:intergenic 20.0%
!!! TTTCTCTTTTATTTTTCTTG+TGG - chr4_2:24644014-24644033 Msa0595530:CDS 20.0%
!!! ATCATTTTGATTTTGCAGTT+TGG + chr4_2:24639102-24639121 None:intergenic 25.0%
! GTAAGACCAAAAAAATTATC+TGG - chr4_2:24639679-24639698 Msa0595530:CDS 25.0%
!! CTTTGTTGTGTTTATTGTTA+TGG - chr4_2:24639731-24639750 Msa0595530:CDS 25.0%
!! TGTTATGGGTTTGAAAATTT+TGG - chr4_2:24639746-24639765 Msa0595530:CDS 25.0%
!!! TTTATTTTCTCAAAAGTGTC+TGG - chr4_2:24640037-24640056 Msa0595530:CDS 25.0%
!! ATTTTAGATTGAAGTTGTGT+TGG - chr4_2:24640373-24640392 Msa0595530:intron 25.0%
!!! ATAATTTTTTGTGTTCTCCT+TGG - chr4_2:24640519-24640538 Msa0595530:CDS 25.0%
! GATGTAAAAATAATTCCCAT+TGG - chr4_2:24640559-24640578 Msa0595530:intron 25.0%
!! TTCCCATTGGTTAAAAATTA+TGG - chr4_2:24640572-24640591 Msa0595530:intron 25.0%
!! CTCCATAATTTTTAACCAAT+GGG + chr4_2:24640577-24640596 None:intergenic 25.0%
!! TCTCCATAATTTTTAACCAA+TGG + chr4_2:24640578-24640597 None:intergenic 25.0%
!!! ATTAGTTTCATTGTTTTGTC+TGG - chr4_2:24640822-24640841 Msa0595530:intron 25.0%
!! TTGAAAAAGTTTTACCATAC+TGG - chr4_2:24640958-24640977 Msa0595530:intron 25.0%
!! AAATTACTCTTTTTGACACT+TGG - chr4_2:24641012-24641031 Msa0595530:intron 25.0%
!!! GAAGTGTTGTTATTATGTTT+TGG - chr4_2:24641230-24641249 Msa0595530:intron 25.0%
!!! TTATTTTCGAGAAGATGAAA+AGG + chr4_2:24641663-24641682 None:intergenic 25.0%
! TTTCATCTTCTCGAAAATAA+TGG - chr4_2:24641663-24641682 Msa0595530:intron 25.0%
!! AACAAGTATTGTAAGCAAAA+CGG + chr4_2:24641702-24641721 None:intergenic 25.0%
!!! TGATCAAGGTTAGTTTTAAA+CGG - chr4_2:24642005-24642024 Msa0595530:CDS 25.0%
!!! CAATATTTATTTTGGAACTG+AGG + chr4_2:24642099-24642118 None:intergenic 25.0%
! AAGTTTCATATTAATCAGTG+TGG + chr4_2:24642701-24642720 None:intergenic 25.0%
!! TGAATATGAAAAGAAGTACA+AGG - chr4_2:24642810-24642829 Msa0595530:intron 25.0%
! ACTGATGATAGATTTCAAAA+CGG + chr4_2:24642845-24642864 None:intergenic 25.0%
!!! TTTTTTTGGAATTTACTCAC+CGG + chr4_2:24642901-24642920 None:intergenic 25.0%
!!! AAACCTGATATCATTTTGAT+TGG - chr4_2:24643638-24643657 Msa0595530:intron 25.0%
! TTTGTATGCAATTTCCAATT+CGG + chr4_2:24643672-24643691 None:intergenic 25.0%
! TTGATATATCTACACAGAAA+AGG - chr4_2:24644051-24644070 Msa0595530:CDS 25.0%
! TGATATATCTACACAGAAAA+GGG - chr4_2:24644052-24644071 Msa0595530:CDS 25.0%
!! TTGTTGCTTGAATAAGAAAA+AGG - chr4_2:24644093-24644112 Msa0595530:exon 25.0%
! CATTATCGAATTTAACAATG+TGG + chr4_2:24644232-24644251 None:intergenic 25.0%
!!! TTTTGATTTTGCAGTTTGGT+TGG + chr4_2:24639098-24639117 None:intergenic 30.0%
GAAAATGAGAGAGAATGAAA+AGG + chr4_2:24639153-24639172 None:intergenic 30.0%
! TTAAACCAAAACGGATTCTT+GGG + chr4_2:24639574-24639593 None:intergenic 30.0%
ACCAAAAAAATTATCTGGGT+CGG - chr4_2:24639684-24639703 Msa0595530:CDS 30.0%
TAATGTAGATGTTTACCGTT+TGG - chr4_2:24640109-24640128 Msa0595530:CDS 30.0%
AATGTAGATGTTTACCGTTT+GGG - chr4_2:24640110-24640129 Msa0595530:CDS 30.0%
! GATTCTCAACATGATCATTT+TGG - chr4_2:24640145-24640164 Msa0595530:CDS 30.0%
! AACATGATCATTTTGGACAT+CGG - chr4_2:24640152-24640171 Msa0595530:CDS 30.0%
TCTTCTCGAAACTTATCAAT+CGG + chr4_2:24640181-24640200 None:intergenic 30.0%
ATTGATAAGTTTCGAGAAGA+TGG - chr4_2:24640181-24640200 Msa0595530:CDS 30.0%
TGCTTATAAAAAAAGACGGA+GGG + chr4_2:24640447-24640466 None:intergenic 30.0%
TTGCTTATAAAAAAAGACGG+AGG + chr4_2:24640448-24640467 None:intergenic 30.0%
AACCAATACTTAGTGATTTG+AGG - chr4_2:24640495-24640514 Msa0595530:CDS 30.0%
TACCTCAAATCACTAAGTAT+TGG + chr4_2:24640500-24640519 None:intergenic 30.0%
TTTCCATGAAACTTATTCCA+AGG + chr4_2:24640539-24640558 None:intergenic 30.0%
! GGTGTCTTGTGTTTTATATT+TGG - chr4_2:24640843-24640862 Msa0595530:intron 30.0%
!! AAAATCAAAAAGTGCCAGTA+TGG + chr4_2:24640975-24640994 None:intergenic 30.0%
! AAGTGAATGTTGACCTTTTA+AGG - chr4_2:24641083-24641102 Msa0595530:intron 30.0%
! AGTGAATGTTGACCTTTTAA+GGG - chr4_2:24641084-24641103 Msa0595530:intron 30.0%
GTTAACAAGTCCAAAAGAAA+AGG + chr4_2:24641202-24641221 None:intergenic 30.0%
AATAACAACACTTCAGTCAA+TGG + chr4_2:24641224-24641243 None:intergenic 30.0%
! ATTTGAAGCAATTTCGTCAA+TGG - chr4_2:24641272-24641291 Msa0595530:intron 30.0%
! TTTGAAGCAATTTCGTCAAT+GGG - chr4_2:24641273-24641292 Msa0595530:intron 30.0%
! ACAACAGGTTGAATACAATT+TGG - chr4_2:24641349-24641368 Msa0595530:CDS 30.0%
TGATTAGGACATTATGACTT+TGG - chr4_2:24641428-24641447 Msa0595530:CDS 30.0%
GTACTTTGTATGTAGTCTAT+TGG - chr4_2:24641454-24641473 Msa0595530:CDS 30.0%
! TCTTTTCTTGCAAATTTTCC+AGG - chr4_2:24641506-24641525 Msa0595530:CDS 30.0%
AAAAGGAGAAATACAAGAGT+TGG + chr4_2:24641646-24641665 None:intergenic 30.0%
GACAATCACATTTCTATTGA+CGG - chr4_2:24641833-24641852 Msa0595530:intron 30.0%
!! AGTGTTGAAAAACGTTTTGA+GGG - chr4_2:24641881-24641900 Msa0595530:intron 30.0%
! CATGTTATTTGGGTAAAGAA+TGG - chr4_2:24641914-24641933 Msa0595530:intron 30.0%
AAACTAACCTTGATCAATGT+GGG + chr4_2:24642001-24642020 None:intergenic 30.0%
AAAACTAACCTTGATCAATG+TGG + chr4_2:24642002-24642021 None:intergenic 30.0%
! CCAAAAAAAAGTGCAGTTTA+AGG + chr4_2:24642310-24642329 None:intergenic 30.0%
!!! CCTTAAACTGCACTTTTTTT+TGG - chr4_2:24642307-24642326 Msa0595530:intron 30.0%
TTTAATTAAGTGCAGTCTGT+TGG - chr4_2:24642461-24642480 Msa0595530:intron 30.0%
!!! AGAATTGCTTTTTTGTTTGC+AGG - chr4_2:24642725-24642744 Msa0595530:intron 30.0%
! CTTTTCATATTCAGCAAACT+TGG + chr4_2:24642803-24642822 None:intergenic 30.0%
! ATATGAAAAGAAGTACAAGG+AGG - chr4_2:24642813-24642832 Msa0595530:intron 30.0%
!!! GTTTTGAAATCTATCATCAG+TGG - chr4_2:24642844-24642863 Msa0595530:intron 30.0%
CATCAGATTCTTGATCAATT+TGG + chr4_2:24642964-24642983 None:intergenic 30.0%
! GTGTAAGTCTGAAATCAAAT+TGG + chr4_2:24643014-24643033 None:intergenic 30.0%
AGTCATGACATATATAACAC+CGG + chr4_2:24643354-24643373 None:intergenic 30.0%
! AGGCAATTTTTGTCTAGAAA+GGG + chr4_2:24643546-24643565 None:intergenic 30.0%
! TAGGCAATTTTTGTCTAGAA+AGG + chr4_2:24643547-24643566 None:intergenic 30.0%
TTCTATTGAAGGAGTTGAAA+AGG - chr4_2:24643580-24643599 Msa0595530:intron 30.0%
TCTATTGAAGGAGTTGAAAA+GGG - chr4_2:24643581-24643600 Msa0595530:intron 30.0%
GTTCCAATCAAAATGATATC+AGG + chr4_2:24643644-24643663 None:intergenic 30.0%
!!! GATATCATTTTGATTGGAAC+TGG - chr4_2:24643644-24643663 Msa0595530:CDS 30.0%
! AGTTGTTTCCTTTGTTTCTT+GGG - chr4_2:24643730-24643749 Msa0595530:CDS 30.0%
AAAAAGTTCCCAAGAAACAA+AGG + chr4_2:24643741-24643760 None:intergenic 30.0%
GAGAAAATTATTGGAAGCAA+AGG - chr4_2:24643851-24643870 Msa0595530:CDS 30.0%
GGAACAATATACAAAGAGTT+TGG - chr4_2:24643917-24643936 Msa0595530:CDS 30.0%
!! TTTTCTTGTGGTTTTGCTTT+TGG - chr4_2:24644026-24644045 Msa0595530:CDS 30.0%
!! TTTCTTGTGGTTTTGCTTTT+GGG - chr4_2:24644027-24644046 Msa0595530:CDS 30.0%
!!! AGGGAGATTTGTTTTTGTTG+AGG + chr4_2:24639051-24639070 None:intergenic 35.0%
AAAGGAGAAAGAGAAAGTGA+AGG + chr4_2:24639135-24639154 None:intergenic 35.0%
TTCCGTTGAAAAAGCTAACT+CGG - chr4_2:24639477-24639496 Msa0595530:CDS 35.0%
! TAAACCAAAACGGATTCTTG+GGG + chr4_2:24639573-24639592 None:intergenic 35.0%
! GTTAAACCAAAACGGATTCT+TGG + chr4_2:24639575-24639594 None:intergenic 35.0%
CCAAAAAAATTATCTGGGTC+GGG - chr4_2:24639685-24639704 Msa0595530:CDS 35.0%
ACAAAACTAACAGACATGGA+TGG + chr4_2:24639916-24639935 None:intergenic 35.0%
GGATACAAAACTAACAGACA+TGG + chr4_2:24639920-24639939 None:intergenic 35.0%
GACAAGTATCTATGTCATGT+AGG + chr4_2:24640002-24640021 None:intergenic 35.0%
TAGATTGAAGTTGTGTTGGA+TGG - chr4_2:24640377-24640396 Msa0595530:intron 35.0%
TGTTGGATACCAATATGTGT+CGG + chr4_2:24640415-24640434 None:intergenic 35.0%
TCTCCTTGGAATAAGTTTCA+TGG - chr4_2:24640533-24640552 Msa0595530:CDS 35.0%
!!! TTGCTTATATTTTAGGACGG+AGG - chr4_2:24640737-24640756 Msa0595530:CDS 35.0%
!!! TGCTTATATTTTAGGACGGA+GGG - chr4_2:24640738-24640757 Msa0595530:CDS 35.0%
! TTACTCTTTTTGACACTTGG+TGG - chr4_2:24641015-24641034 Msa0595530:intron 35.0%
!! AATGTTGACCTTTTAAGGGA+TGG - chr4_2:24641088-24641107 Msa0595530:intron 35.0%
TAGGACATTATGACTTTGGT+TGG - chr4_2:24641432-24641451 Msa0595530:CDS 35.0%
!! ATTGTCGGTCTTGTTAAATC+TGG + chr4_2:24641594-24641613 None:intergenic 35.0%
ATGATCGATGATCTCATTGT+CGG + chr4_2:24641609-24641628 None:intergenic 35.0%
! AGGTATTGTATATTGGGTGA+TGG - chr4_2:24641728-24641747 Msa0595530:CDS 35.0%
!!! GAGTGTTGAAAAACGTTTTG+AGG - chr4_2:24641880-24641899 Msa0595530:intron 35.0%
!!! AAAAACGTTTTGAGGGACTT+GGG - chr4_2:24641888-24641907 Msa0595530:intron 35.0%
GCATAATCACATCAACATGT+TGG + chr4_2:24642074-24642093 None:intergenic 35.0%
GACGCACACATCATTAATTT+AGG + chr4_2:24642182-24642201 None:intergenic 35.0%
TCACTATATCCCACTATGTA+TGG - chr4_2:24642211-24642230 Msa0595530:intron 35.0%
ATTCACTTGCCATACATAGT+GGG + chr4_2:24642223-24642242 None:intergenic 35.0%
TATTCACTTGCCATACATAG+TGG + chr4_2:24642224-24642243 None:intergenic 35.0%
CTATGTATGGCAAGTGAATA+AGG - chr4_2:24642224-24642243 Msa0595530:intron 35.0%
!!! TGCACTTTTTTTTGGAACTG+AGG - chr4_2:24642315-24642334 Msa0595530:intron 35.0%
!!! GCACTTTTTTTTGGAACTGA+GGG - chr4_2:24642316-24642335 Msa0595530:intron 35.0%
!! TATTTAGCTTTCAGCTTCTC+AGG + chr4_2:24642398-24642417 None:intergenic 35.0%
CTGCACTTAATTAAACTGCT+AGG + chr4_2:24642456-24642475 None:intergenic 35.0%
CTGTAGGAGTTGGATTTATT+CGG + chr4_2:24642542-24642561 None:intergenic 35.0%
!! TCCATACTTTTTGACATCCT+CGG + chr4_2:24642648-24642667 None:intergenic 35.0%
!!! CTTTTTCAGCAAGGTCATAT+TGG + chr4_2:24643144-24643163 None:intergenic 35.0%
ATGACCTTGCTGAAAAAGTT+TGG - chr4_2:24643146-24643165 Msa0595530:intron 35.0%
!!! ATCACCAAACTTTTTCAGCA+AGG + chr4_2:24643153-24643172 None:intergenic 35.0%
!! AGATTTGGTGTTAGAGAACA+TGG - chr4_2:24643206-24643225 Msa0595530:intron 35.0%
ACAAAAAAGGTTGCACAGTA+TGG + chr4_2:24643281-24643300 None:intergenic 35.0%
GTAGTCGGTGAAAACAAAAA+AGG + chr4_2:24643294-24643313 None:intergenic 35.0%
! ATTTTTGTCTAGAAAGGGCA+AGG + chr4_2:24643541-24643560 None:intergenic 35.0%
AACTCCTTCAATAGAAGTTC+CGG + chr4_2:24643576-24643595 None:intergenic 35.0%
TTGGAAATTGCATACAAAGC+TGG - chr4_2:24643674-24643693 Msa0595530:CDS 35.0%
GGATCTAAGAAAAGAAGGAA+AGG - chr4_2:24643700-24643719 Msa0595530:CDS 35.0%
! GAGTTGTTTCCTTTGTTTCT+TGG - chr4_2:24643729-24643748 Msa0595530:CDS 35.0%
TCTTTGTATATTGTTCCTGC+AGG + chr4_2:24643914-24643933 None:intergenic 35.0%
TCCGTTGAAAAAGCTAACTC+GGG - chr4_2:24639478-24639497 Msa0595530:CDS 40.0%
!!! ACCCGAGTTAGCTTTTTCAA+CGG + chr4_2:24639482-24639501 None:intergenic 40.0%
TCATAAAGCACATGACCCAA+TGG + chr4_2:24639532-24639551 None:intergenic 40.0%
! ATAACCCCAAGAATCCGTTT+TGG - chr4_2:24639566-24639585 Msa0595530:CDS 40.0%
CGATCACGGTTAAACCAAAA+CGG + chr4_2:24639583-24639602 None:intergenic 40.0%
!!! CGTTTTGGTTTAACCGTGAT+CGG - chr4_2:24639581-24639600 Msa0595530:CDS 40.0%
CAGACAAAACAAACCGATCA+CGG + chr4_2:24639597-24639616 None:intergenic 40.0%
!!! TTTGTTTTGTCTGCTGGTCA+TGG - chr4_2:24639604-24639623 Msa0595530:CDS 40.0%
TATGCTTTGCTTCATCTTGC+TGG - chr4_2:24639640-24639659 Msa0595530:CDS 40.0%
!!! CCCGACCCAGATAATTTTTT+TGG + chr4_2:24639688-24639707 None:intergenic 40.0%
TCCAATGTTCTTGTCTGTGT+TGG - chr4_2:24639937-24639956 Msa0595530:CDS 40.0%
ACCAACACAGACAAGAACAT+TGG + chr4_2:24639941-24639960 None:intergenic 40.0%
! TGTCTGTGTTGGTGCTTTAT+AGG - chr4_2:24639948-24639967 Msa0595530:CDS 40.0%
TGTCTGTGTTAGTGCTTCAT+AGG - chr4_2:24640078-24640097 Msa0595530:CDS 40.0%
! GATGTTTACCGTTTGGGTTT+AGG - chr4_2:24640116-24640135 Msa0595530:CDS 40.0%
TCCAACATCCTAAACCCAAA+CGG + chr4_2:24640127-24640146 None:intergenic 40.0%
TCATTCGGGATGATCAAGAT+CGG + chr4_2:24640275-24640294 None:intergenic 40.0%
TTCCACGTATTCACTCATTC+GGG + chr4_2:24640289-24640308 None:intergenic 40.0%
CTTCCACGTATTCACTCATT+CGG + chr4_2:24640290-24640309 None:intergenic 40.0%
GAATGAGTGAATACGTGGAA+GGG - chr4_2:24640289-24640308 Msa0595530:intron 40.0%
GTTTAGTGGGAATGATGTGA+TGG - chr4_2:24640337-24640356 Msa0595530:intron 40.0%
TTGTGTTGGATGGTACGAAA+TGG - chr4_2:24640387-24640406 Msa0595530:intron 40.0%
!! GAAATGGTACCGACACATAT+TGG - chr4_2:24640403-24640422 Msa0595530:intron 40.0%
ACAGAACTCAACAACATGCA+AGG + chr4_2:24640922-24640941 None:intergenic 40.0%
CAGGAGTCTCAAAATTCTCA+GGG + chr4_2:24641318-24641337 None:intergenic 40.0%
AGCTAAGTGTTTCTCTGCAA+GGG + chr4_2:24641570-24641589 None:intergenic 40.0%
AGCAAAACGGAAGACAACTA+AGG + chr4_2:24641689-24641708 None:intergenic 40.0%
! ATTGGGTGATGGTTGTCAAA+TGG - chr4_2:24641739-24641758 Msa0595530:CDS 40.0%
!!! GAAAAACGTTTTGAGGGACT+TGG - chr4_2:24641887-24641906 Msa0595530:intron 40.0%
! ACTTGGGTGGCATGTTATTT+GGG - chr4_2:24641904-24641923 Msa0595530:intron 40.0%
TGGGTAAAGAATGGAAACAC+TGG - chr4_2:24641923-24641942 Msa0595530:intron 40.0%
TGAAATTCGTGCTGCCATTA+AGG - chr4_2:24641952-24641971 Msa0595530:intron 40.0%
! GACAGCTTTTGCTTCCTTAA+TGG + chr4_2:24641969-24641988 None:intergenic 40.0%
TCTTGTGGCATCAACTTCTT+TGG + chr4_2:24642588-24642607 None:intergenic 40.0%
GATGCCACAAGAAACAATCT+TGG - chr4_2:24642596-24642615 Msa0595530:intron 40.0%
! CCATCCAAGATTGTTTCTTG+TGG + chr4_2:24642603-24642622 None:intergenic 40.0%
CCACAAGAAACAATCTTGGA+TGG - chr4_2:24642600-24642619 Msa0595530:intron 40.0%
!! CCATACTTTTTGACATCCTC+GGG + chr4_2:24642647-24642666 None:intergenic 40.0%
!!! GCTTTTTTGTTTGCAGGCAT+TGG - chr4_2:24642731-24642750 Msa0595530:intron 40.0%
! CATTAAGGTTTTGCTGCGAT+AGG + chr4_2:24643067-24643086 None:intergenic 40.0%
! TGGTGTTAGAGAACATGGAA+TGG - chr4_2:24643211-24643230 Msa0595530:intron 40.0%
GGTGTTAGAGAACATGGAAT+GGG - chr4_2:24643212-24643231 Msa0595530:intron 40.0%
CACAGTATGGAATAAGTCCA+CGG + chr4_2:24643268-24643287 None:intergenic 40.0%
!! GACATATATAACACCGGCTT+CGG + chr4_2:24643348-24643367 None:intergenic 40.0%
GTCATGACTCACGATTCAAT+AGG - chr4_2:24643365-24643384 Msa0595530:intron 40.0%
ACTCACGATTCAATAGGACT+TGG - chr4_2:24643371-24643390 Msa0595530:intron 40.0%
TCAAGATATTTGGCATTGCC+CGG + chr4_2:24643442-24643461 None:intergenic 40.0%
CAAAAATTGCCTAACCTTGC+CGG - chr4_2:24643554-24643573 Msa0595530:intron 40.0%
ATTGAAGGAGTTGAAAAGGG+TGG - chr4_2:24643584-24643603 Msa0595530:intron 40.0%
AATTGCATACAAAGCTGGTG+AGG - chr4_2:24643679-24643698 Msa0595530:CDS 40.0%
GGTGAGGATCTAAGAAAAGA+AGG - chr4_2:24643695-24643714 Msa0595530:CDS 40.0%
TGAACAATCGCAAGCTTACA+AGG - chr4_2:24643763-24643782 Msa0595530:CDS 40.0%
ATTGAGGCTGGATCAACATT+CGG - chr4_2:24643824-24643843 Msa0595530:CDS 40.0%
TTCGGGTGGGAGAAAATTAT+TGG - chr4_2:24643842-24643861 Msa0595530:CDS 40.0%
GGAAGCAAAGGAAAAGCAAT+CGG - chr4_2:24643863-24643882 Msa0595530:CDS 40.0%
ATGTGGCAACACAACTCAAT+TGG + chr4_2:24644215-24644234 None:intergenic 40.0%
TACACTGAACCAGTCCTCTT+TGG - chr4_2:24639018-24639037 Msa0595530:three_prime_UTR 45.0%
ACACTGAACCAGTCCTCTTT+GGG - chr4_2:24639019-24639038 Msa0595530:three_prime_UTR 45.0%
TAGAGAGAGAGAGAGAGAGA+GGG + chr4_2:24639070-24639089 None:intergenic 45.0%
GGGTCATGTGCTTTATGATG+AGG - chr4_2:24639534-24639553 Msa0595530:CDS 45.0%
!!! GATCGGTTTGTTTTGTCTGC+TGG - chr4_2:24639598-24639617 Msa0595530:CDS 45.0%
TGCTGGATATGACAGTGTTC+AGG - chr4_2:24639657-24639676 Msa0595530:CDS 45.0%
! ACCGTTTGGGTTTAGGATGT+TGG - chr4_2:24640123-24640142 Msa0595530:CDS 45.0%
ATCCCGAATGAGTGAATACG+TGG - chr4_2:24640284-24640303 Msa0595530:intron 45.0%
CGAATGAGTGAATACGTGGA+AGG - chr4_2:24640288-24640307 Msa0595530:intron 45.0%
CATCATTCCCACTAAACCCA+GGG + chr4_2:24640334-24640353 None:intergenic 45.0%
ACATCATTCCCACTAAACCC+AGG + chr4_2:24640335-24640354 None:intergenic 45.0%
! GTGTCAGTGTCGAACACAAA+AGG + chr4_2:24640772-24640791 None:intergenic 45.0%
CTCGCTAACCATCCCTTAAA+AGG + chr4_2:24641099-24641118 None:intergenic 45.0%
! AAAATTCTCAGGGTGTCCAG+GGG + chr4_2:24641308-24641327 None:intergenic 45.0%
! CAAAATTCTCAGGGTGTCCA+GGG + chr4_2:24641309-24641328 None:intergenic 45.0%
! TCAAAATTCTCAGGGTGTCC+AGG + chr4_2:24641310-24641329 None:intergenic 45.0%
CCAGGAGTCTCAAAATTCTC+AGG + chr4_2:24641319-24641338 None:intergenic 45.0%
!!! CCTGAGAATTTTGAGACTCC+TGG - chr4_2:24641316-24641335 Msa0595530:CDS 45.0%
CCTGTTGTGACTTCAATTCC+AGG + chr4_2:24641337-24641356 None:intergenic 45.0%
CCTGGAATTGAAGTCACAAC+AGG - chr4_2:24641334-24641353 Msa0595530:CDS 45.0%
! GCAAATTTTCCAGGTCCTCT+TGG - chr4_2:24641515-24641534 Msa0595530:CDS 45.0%
AAGGGCTAAACCAACAGCAT+TGG + chr4_2:24641552-24641571 None:intergenic 45.0%
CAGCTAAGTGTTTCTCTGCA+AGG + chr4_2:24641571-24641590 None:intergenic 45.0%
! GGTGATGGTTGTCAAATGGA+GGG - chr4_2:24641743-24641762 Msa0595530:CDS 45.0%
! AATGAAGCTTGCTCACTTGC+AGG - chr4_2:24641773-24641792 Msa0595530:intron 45.0%
ACTCTCAGTGAACGCGATTT+CGG + chr4_2:24641864-24641883 None:intergenic 45.0%
GACTTGGGTGGCATGTTATT+TGG - chr4_2:24641903-24641922 Msa0595530:intron 45.0%
AGACAGACCCACATTGATCA+AGG - chr4_2:24641991-24642010 Msa0595530:CDS 45.0%
CCCGAGGATGTCAAAAAGTA+TGG - chr4_2:24642644-24642663 Msa0595530:intron 45.0%
! GTTTTGCTGCGATAGGTTTC+GGG + chr4_2:24643060-24643079 None:intergenic 45.0%
! GGTTTTGCTGCGATAGGTTT+CGG + chr4_2:24643061-24643080 None:intergenic 45.0%
!! GAACATTCGCAAGGGCATTA+AGG + chr4_2:24643082-24643101 None:intergenic 45.0%
AATGTTCTTCCCGGTCTGAT+TGG - chr4_2:24643095-24643114 Msa0595530:intron 45.0%
AATCTAACGTTACGCTCTGC+TGG + chr4_2:24643191-24643210 None:intergenic 45.0%
GCAGAGCGTAACGTTAGATT+TGG - chr4_2:24643191-24643210 Msa0595530:intron 45.0%
!! TATAACACCGGCTTCGGATA+GGG + chr4_2:24643342-24643361 None:intergenic 45.0%
!! ATATAACACCGGCTTCGGAT+AGG + chr4_2:24643343-24643362 None:intergenic 45.0%
CGATTCAATAGGACTTGGAG+AGG - chr4_2:24643376-24643395 Msa0595530:intron 45.0%
TCAATAGGACTTGGAGAGGA+TGG - chr4_2:24643380-24643399 Msa0595530:intron 45.0%
AGCTGGAGCATACAAAGTTG+CGG - chr4_2:24643490-24643509 Msa0595530:intron 45.0%
CTAGAAAGGGCAAGGATAGA+GGG + chr4_2:24643533-24643552 None:intergenic 45.0%
TCTAGAAAGGGCAAGGATAG+AGG + chr4_2:24643534-24643553 None:intergenic 45.0%
ATAGAAGTTCCGGCAAGGTT+AGG + chr4_2:24643566-24643585 None:intergenic 45.0%
CTTCAATAGAAGTTCCGGCA+AGG + chr4_2:24643571-24643590 None:intergenic 45.0%
CTTGCCGGAACTTCTATTGA+AGG - chr4_2:24643569-24643588 Msa0595530:intron 45.0%
ATCGTCTCTGACAACTCAAC+AGG - chr4_2:24643611-24643630 Msa0595530:intron 45.0%
! GATTGGAACTGGTTCCGAAT+TGG - chr4_2:24643655-24643674 Msa0595530:CDS 45.0%
TGTTCTCCCTACTGCTGTTA+CGG - chr4_2:24643790-24643809 Msa0595530:CDS 45.0%
TTGAGGCTGGATCAACATTC+GGG - chr4_2:24643825-24643844 Msa0595530:CDS 45.0%
!!! GCAATCGGCATTGATCGTTT+TGG - chr4_2:24643878-24643897 Msa0595530:CDS 45.0%
!!! TATTAAAAAAGATTTTTTTT+TGG + chr4_2:24642915-24642934 None:intergenic 5.0%
GTAGAGAGAGAGAGAGAGAG+AGG + chr4_2:24639071-24639090 None:intergenic 50.0%
!! GATTGAGAGAGGTGGGTTGT+GGG + chr4_2:24639343-24639362 None:intergenic 50.0%
GATGAGTCTGTGGTGGTTGA+CGG + chr4_2:24639412-24639431 None:intergenic 50.0%
AACGAGAGATGAGTCTGTGG+TGG + chr4_2:24639419-24639438 None:intergenic 50.0%
CTCAACGAGAGATGAGTCTG+TGG + chr4_2:24639422-24639441 None:intergenic 50.0%
TTTCAACGGAATCAACCGCG+AGG + chr4_2:24639468-24639487 None:intergenic 50.0%
CACAACCCATAGGCAAACCA+GGG + chr4_2:24639507-24639526 None:intergenic 50.0%
! CCTATGGGTTGTGCTCCATT+GGG - chr4_2:24639514-24639533 Msa0595530:CDS 50.0%
ATACGTGGAAGGGTGACTGT+AGG - chr4_2:24640299-24640318 Msa0595530:intron 50.0%
ACTGTAGGAAGCTTGATCCC+TGG - chr4_2:24640314-24640333 Msa0595530:intron 50.0%
CTGTAGGAAGCTTGATCCCT+GGG - chr4_2:24640315-24640334 Msa0595530:intron 50.0%
AGCTTGATCCCTGGGTTTAG+TGG - chr4_2:24640323-24640342 Msa0595530:intron 50.0%
GCTTGATCCCTGGGTTTAGT+GGG - chr4_2:24640324-24640343 Msa0595530:intron 50.0%
! TTTTCCAGGTCCTCTTGGTC+AGG - chr4_2:24641520-24641539 Msa0595530:CDS 50.0%
TTTCCAGGTCCTCTTGGTCA+GGG - chr4_2:24641521-24641540 Msa0595530:CDS 50.0%
! GGGTGATGGTTGTCAAATGG+AGG - chr4_2:24641742-24641761 Msa0595530:CDS 50.0%
TTGCTCACTTGCAGGACACT+GGG - chr4_2:24641781-24641800 Msa0595530:intron 50.0%
!!! AACGTTTTGAGGGACTTGGG+TGG - chr4_2:24641891-24641910 Msa0595530:intron 50.0%
TCCAACTCCTACAGTGTGCA+TGG - chr4_2:24642548-24642567 Msa0595530:intron 50.0%
TCCATGCACACTGTAGGAGT+TGG + chr4_2:24642552-24642571 None:intergenic 50.0%
TGCACTTCCATGCACACTGT+AGG + chr4_2:24642558-24642577 None:intergenic 50.0%
! AGTGTGCATGGAAGTGCACT+TGG - chr4_2:24642560-24642579 Msa0595530:intron 50.0%
ATTCAAGAGCAGCACCCTCA+CGG + chr4_2:24642768-24642787 None:intergenic 50.0%
! GTGCTGCTCTTGAATCTGAG+TGG - chr4_2:24642773-24642792 Msa0595530:intron 50.0%
ATCAGTGGCGATTTACCTGC+TGG - chr4_2:24642859-24642878 Msa0595530:intron 50.0%
! TGGCGATTTACCTGCTGGTT+GGG - chr4_2:24642864-24642883 Msa0595530:intron 50.0%
!! TGGTTGGGAGAAAGCACTTC+CGG - chr4_2:24642879-24642898 Msa0595530:intron 50.0%
!! CGATAGGTTTCGGGTTGCAT+CGG + chr4_2:24643051-24643070 None:intergenic 50.0%
ACCGGGAAGAACATTCGCAA+GGG + chr4_2:24643090-24643109 None:intergenic 50.0%
GCTCTGCTGGAGAATCACTT+TGG + chr4_2:24643178-24643197 None:intergenic 50.0%
GGAATGGGAGCAATCAGCAA+TGG - chr4_2:24643227-24643246 Msa0595530:intron 50.0%
!! GTTTTCACCGACTACATGCG+TGG - chr4_2:24643299-24643318 Msa0595530:intron 50.0%
AATGGCACCACGCATGTAGT+CGG + chr4_2:24643309-24643328 None:intergenic 50.0%
!! ACTACATGCGTGGTGCCATT+AGG - chr4_2:24643309-24643328 Msa0595530:intron 50.0%
AAGCTTGCCAGGTGCTCTAT+AGG + chr4_2:24643419-24643438 None:intergenic 50.0%
! GGGCGGAGCATCAAGATATT+TGG + chr4_2:24643452-24643471 None:intergenic 50.0%
! AGCTGTTTCGTTACCGTCAG+CGG + chr4_2:24643474-24643493 None:intergenic 50.0%
ACAAAGTTGCGGTGCTTAGC+AGG - chr4_2:24643501-24643520 Msa0595530:intron 50.0%
! TACGGCTAGGGTAAGCATTG+AGG - chr4_2:24643808-24643827 Msa0595530:CDS 50.0%
GTTGAGGTTGTCGCCCAAAG+AGG + chr4_2:24639035-24639054 None:intergenic 55.0%
! GTTGGTGAGAGAGAGGGAAG+TGG + chr4_2:24639233-24639252 None:intergenic 55.0%
!! ATGGGGGTTGGTGAGAGAGA+GGG + chr4_2:24639239-24639258 None:intergenic 55.0%
! TGGTGGATGGGAGAGAAGAG+AGG + chr4_2:24639297-24639316 None:intergenic 55.0%
!! GGTTGAGGGTGATGGTGGAT+GGG + chr4_2:24639309-24639328 None:intergenic 55.0%
!! GGATTGAGAGAGGTGGGTTG+TGG + chr4_2:24639344-24639363 None:intergenic 55.0%
! GTGGTGGGATTGAGAGAGGT+GGG + chr4_2:24639350-24639369 None:intergenic 55.0%
CAACACGATCCGTTTCCTCG+CGG - chr4_2:24639450-24639469 Msa0595530:CDS 55.0%
CGGAATCAACCGCGAGGAAA+CGG + chr4_2:24639462-24639481 None:intergenic 55.0%
AAAGCTAACTCGGGTCACCC+TGG - chr4_2:24639487-24639506 Msa0595530:CDS 55.0%
! GGTCACCCTGGTTTGCCTAT+GGG - chr4_2:24639499-24639518 Msa0595530:CDS 55.0%
GCACAACCCATAGGCAAACC+AGG + chr4_2:24639508-24639527 None:intergenic 55.0%
! GCCTATGGGTTGTGCTCCAT+TGG - chr4_2:24639513-24639532 Msa0595530:CDS 55.0%
CCCAATGGAGCACAACCCAT+AGG + chr4_2:24639517-24639536 None:intergenic 55.0%
! ACGGAGGGAGTATGTCGTGT+TGG + chr4_2:24640432-24640451 None:intergenic 55.0%
TTGGCAATGCCCTGACCAAG+AGG + chr4_2:24641533-24641552 None:intergenic 55.0%
!! CAGGGCATTGCCAATGCTGT+TGG - chr4_2:24641539-24641558 Msa0595530:CDS 55.0%
CTTGCTCACTTGCAGGACAC+TGG - chr4_2:24641780-24641799 Msa0595530:intron 55.0%
TGCTCACTTGCAGGACACTG+GGG - chr4_2:24641782-24641801 Msa0595530:intron 55.0%
TTGCAGGACACTGGGGACTA+GGG - chr4_2:24641789-24641808 Msa0595530:intron 55.0%
GGCACGTGGAAAGGCTCATA+TGG + chr4_2:24642626-24642645 None:intergenic 55.0%
! TTTTGACATCCTCGGGCACG+TGG + chr4_2:24642640-24642659 None:intergenic 55.0%
GTGGCGATTTACCTGCTGGT+TGG - chr4_2:24642863-24642882 Msa0595530:intron 55.0%
AGTGCTTTCTCCCAACCAGC+AGG + chr4_2:24642877-24642896 None:intergenic 55.0%
GCCCTTGCGAATGTTCTTCC+CGG - chr4_2:24643086-24643105 Msa0595530:intron 55.0%
GACCGGGAAGAACATTCGCA+AGG + chr4_2:24643091-24643110 None:intergenic 55.0%
GTTCTTCCCGGTCTGATTGG+TGG - chr4_2:24643098-24643117 Msa0595530:intron 55.0%
TGCACTGCCACCAATCAGAC+CGG + chr4_2:24643108-24643127 None:intergenic 55.0%
GGATAGGGCGGAAAGCCTAA+TGG + chr4_2:24643327-24643346 None:intergenic 55.0%
! TGCTCTATAGGCTGGTGGGT+TGG + chr4_2:24643407-24643426 None:intergenic 55.0%
CAGGTGCTCTATAGGCTGGT+GGG + chr4_2:24643411-24643430 None:intergenic 55.0%
TTGCCAGGTGCTCTATAGGC+TGG + chr4_2:24643415-24643434 None:intergenic 55.0%
! TAGAGCACCTGGCAAGCTTC+CGG - chr4_2:24643420-24643439 Msa0595530:intron 55.0%
CTGTTTCGTTACCGTCAGCG+GGG + chr4_2:24643472-24643491 None:intergenic 55.0%
! GCTGTTTCGTTACCGTCAGC+GGG + chr4_2:24643473-24643492 None:intergenic 55.0%
GCTGACGGTAACGAAACAGC+TGG - chr4_2:24643473-24643492 Msa0595530:intron 55.0%
TCCCTACTGCTGTTACGGCT+AGG - chr4_2:24643795-24643814 Msa0595530:CDS 55.0%
CCCTAGCCGTAACAGCAGTA+GGG + chr4_2:24643799-24643818 None:intergenic 55.0%
CCCTACTGCTGTTACGGCTA+GGG - chr4_2:24643796-24643815 Msa0595530:CDS 55.0%
ACCCTAGCCGTAACAGCAGT+AGG + chr4_2:24643800-24643819 None:intergenic 55.0%
!! GCTAGGGTAAGCATTGAGGC+TGG - chr4_2:24643812-24643831 Msa0595530:CDS 55.0%
AGGCTGGATCAACATTCGGG+TGG - chr4_2:24643828-24643847 Msa0595530:CDS 55.0%
GGCTGGATCAACATTCGGGT+GGG - chr4_2:24643829-24643848 Msa0595530:CDS 55.0%
! TTTGGAGCTAGTGCTCCTGC+AGG - chr4_2:24643896-24643915 Msa0595530:CDS 55.0%
GGTTGTCGCCCAAAGAGGAC+TGG + chr4_2:24639030-24639049 None:intergenic 60.0%
!! GATGGGGGTTGGTGAGAGAG+AGG + chr4_2:24639240-24639259 None:intergenic 60.0%
TGGTGTGTGGCGCGTGAGAT+GGG + chr4_2:24639257-24639276 None:intergenic 60.0%
ATGGTGTGTGGCGCGTGAGA+TGG + chr4_2:24639258-24639277 None:intergenic 60.0%
! TGGTGGATGGGGATGGTGTG+TGG + chr4_2:24639270-24639289 None:intergenic 60.0%
!! AAGAGAGGCGCGTGGTGGAT+GGG + chr4_2:24639282-24639301 None:intergenic 60.0%
!! CGGTTGAGGGTGATGGTGGA+TGG + chr4_2:24639310-24639329 None:intergenic 60.0%
!! GAGGTGGGTTGTGGGAGTGA+GGG + chr4_2:24639335-24639354 None:intergenic 60.0%
!! AGAGGTGGGTTGTGGGAGTG+AGG + chr4_2:24639336-24639355 None:intergenic 60.0%
!! GGTGGTGGGATTGAGAGAGG+TGG + chr4_2:24639351-24639370 None:intergenic 60.0%
!! GGAGGTGGTGGGATTGAGAG+AGG + chr4_2:24639354-24639373 None:intergenic 60.0%
! AGGCATGGATAGCGGTGTGG+CGG + chr4_2:24639375-24639394 None:intergenic 60.0%
! GGAGACGGAGGCATGGATAG+CGG + chr4_2:24639383-24639402 None:intergenic 60.0%
TGTGGTGGTTGACGGTGGTG+CGG + chr4_2:24639404-24639423 None:intergenic 60.0%
GAGTCTGTGGTGGTTGACGG+TGG + chr4_2:24639409-24639428 None:intergenic 60.0%
! GGGTCACCCTGGTTTGCCTA+TGG - chr4_2:24639498-24639517 Msa0595530:CDS 60.0%
CAATGGGAGAGCAGAACCCC+TGG - chr4_2:24641289-24641308 Msa0595530:intron 60.0%
ATGCCCTGACCAAGAGGACC+TGG + chr4_2:24641527-24641546 None:intergenic 60.0%
CTTGCAGGACACTGGGGACT+AGG - chr4_2:24641788-24641807 Msa0595530:intron 60.0%
ACATCCTCGGGCACGTGGAA+AGG + chr4_2:24642635-24642654 None:intergenic 60.0%
TTGGAGTCGCCACATCCGTG+AGG - chr4_2:24642750-24642769 Msa0595530:intron 60.0%
TGGAGTCGCCACATCCGTGA+GGG - chr4_2:24642751-24642770 Msa0595530:intron 60.0%
! GTTGCATCGGCAGGGATCTC+TGG + chr4_2:24643038-24643057 None:intergenic 60.0%
!! GGTTTCGGGTTGCATCGGCA+GGG + chr4_2:24643046-24643065 None:intergenic 60.0%
!! AGGTTTCGGGTTGCATCGGC+AGG + chr4_2:24643047-24643066 None:intergenic 60.0%
GCACTGCCACCAATCAGACC+GGG + chr4_2:24643107-24643126 None:intergenic 60.0%
CTTTCCGCCCTATCCGAAGC+CGG - chr4_2:24643332-24643351 Msa0595530:intron 60.0%
!! AACACCGGCTTCGGATAGGG+CGG + chr4_2:24643339-24643358 None:intergenic 60.0%
CCAGGTGCTCTATAGGCTGG+TGG + chr4_2:24643412-24643431 None:intergenic 60.0%
! CCACCAGCCTATAGAGCACC+TGG - chr4_2:24643409-24643428 Msa0595530:intron 60.0%
! AGAGCACCTGGCAAGCTTCC+GGG - chr4_2:24643421-24643440 Msa0595530:intron 60.0%
TTTCGTTACCGTCAGCGGGG+CGG + chr4_2:24643469-24643488 None:intergenic 60.0%
GTGTGTGGCGCGTGAGATGG+GGG + chr4_2:24639255-24639274 None:intergenic 65.0%
GGTGTGTGGCGCGTGAGATG+GGG + chr4_2:24639256-24639275 None:intergenic 65.0%
!! AGAGAGGCGCGTGGTGGATG+GGG + chr4_2:24639281-24639300 None:intergenic 65.0%
! GAAGAGAGGCGCGTGGTGGA+TGG + chr4_2:24639283-24639302 None:intergenic 65.0%
! GAGAGAAGAGAGGCGCGTGG+TGG + chr4_2:24639287-24639306 None:intergenic 65.0%
! TGGGAGAGAAGAGAGGCGCG+TGG + chr4_2:24639290-24639309 None:intergenic 65.0%
! GGTGCGGTTGAGGGTGATGG+TGG + chr4_2:24639314-24639333 None:intergenic 65.0%
! GAGGGTGCGGTTGAGGGTGA+TGG + chr4_2:24639317-24639336 None:intergenic 65.0%
! GGGAGTGAGGGTGCGGTTGA+GGG + chr4_2:24639323-24639342 None:intergenic 65.0%
! TGGGAGTGAGGGTGCGGTTG+AGG + chr4_2:24639324-24639343 None:intergenic 65.0%
GGGTTGTGGGAGTGAGGGTG+CGG + chr4_2:24639330-24639349 None:intergenic 65.0%
! CATGGATAGCGGTGTGGCGG+AGG + chr4_2:24639372-24639391 None:intergenic 65.0%
! CGGAGGCATGGATAGCGGTG+TGG + chr4_2:24639378-24639397 None:intergenic 65.0%
GGTTGACGGTGGTGCGGAGA+CGG + chr4_2:24639398-24639417 None:intergenic 65.0%
TGAGCCTTTCCACGTGCCCG+AGG - chr4_2:24642628-24642647 Msa0595530:intron 65.0%
GAGCAGCACCCTCACGGATG+TGG + chr4_2:24642762-24642781 None:intergenic 65.0%
GGCATCGCTCTTCACAGCCG+TGG - chr4_2:24643248-24643267 Msa0595530:intron 65.0%
GCATTGCCCGGAAGCTTGCC+AGG + chr4_2:24643430-24643449 None:intergenic 65.0%
TTGATGCTCCGCCCCGCTGA+CGG - chr4_2:24643458-24643477 Msa0595530:intron 65.0%
GTGGCGCGTGAGATGGGGGT+TGG + chr4_2:24639251-24639270 None:intergenic 70.0%
!! AGGCGCGTGGTGGATGGGGA+TGG + chr4_2:24639277-24639296 None:intergenic 70.0%
! AGCGGTGTGGCGGAGGTGGT+GGG + chr4_2:24639365-24639384 None:intergenic 70.0%
! TAGCGGTGTGGCGGAGGTGG+TGG + chr4_2:24639366-24639385 None:intergenic 70.0%
! GGATAGCGGTGTGGCGGAGG+TGG + chr4_2:24639369-24639388 None:intergenic 70.0%
GTGGTGCGGAGACGGAGGCA+TGG + chr4_2:24639390-24639409 None:intergenic 70.0%
TGACGGTGGTGCGGAGACGG+AGG + chr4_2:24639395-24639414 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 24639017 24644302 24639017 ID=Msa0595530;Name=Msa0595530
chr4_2 mRNA 24639017 24644302 24639017 ID=Msa0595530-mRNA-1;Parent=Msa0595530;Name=Msa0595530-mRNA-1;_AED=0.04;_eAED=0.04;_QI=200|1|1|1|1|1|7|317|734
chr4_2 exon 24639017 24640293 24639017 ID=Msa0595530-mRNA-1:exon:6661;Parent=Msa0595530-mRNA-1
chr4_2 exon 24640419 24640572 24640419 ID=Msa0595530-mRNA-1:exon:6660;Parent=Msa0595530-mRNA-1
chr4_2 exon 24640659 24640807 24640659 ID=Msa0595530-mRNA-1:exon:6659;Parent=Msa0595530-mRNA-1
chr4_2 exon 24641307 24641589 24641307 ID=Msa0595530-mRNA-1:exon:6658;Parent=Msa0595530-mRNA-1
chr4_2 exon 24641686 24641791 24641686 ID=Msa0595530-mRNA-1:exon:6657;Parent=Msa0595530-mRNA-1
chr4_2 exon 24641964 24642054 24641964 ID=Msa0595530-mRNA-1:exon:6656;Parent=Msa0595530-mRNA-1
chr4_2 exon 24643641 24644302 24643641 ID=Msa0595530-mRNA-1:exon:6655;Parent=Msa0595530-mRNA-1
chr4_2 five_prime_UTR 24644103 24644302 24644103 ID=Msa0595530-mRNA-1:five_prime_utr;Parent=Msa0595530-mRNA-1
chr4_2 CDS 24643641 24644102 24643641 ID=Msa0595530-mRNA-1:cds;Parent=Msa0595530-mRNA-1
chr4_2 CDS 24641964 24642054 24641964 ID=Msa0595530-mRNA-1:cds;Parent=Msa0595530-mRNA-1
chr4_2 CDS 24641686 24641791 24641686 ID=Msa0595530-mRNA-1:cds;Parent=Msa0595530-mRNA-1
chr4_2 CDS 24641307 24641589 24641307 ID=Msa0595530-mRNA-1:cds;Parent=Msa0595530-mRNA-1
chr4_2 CDS 24640659 24640807 24640659 ID=Msa0595530-mRNA-1:cds;Parent=Msa0595530-mRNA-1
chr4_2 CDS 24640419 24640572 24640419 ID=Msa0595530-mRNA-1:cds;Parent=Msa0595530-mRNA-1
chr4_2 CDS 24639334 24640293 24639334 ID=Msa0595530-mRNA-1:cds;Parent=Msa0595530-mRNA-1
chr4_2 three_prime_UTR 24639017 24639333 24639017 ID=Msa0595530-mRNA-1:three_prime_utr;Parent=Msa0595530-mRNA-1
Gene Sequence

>Msa0595530

ATGTCTTCAACTTCCACTTCCCTCTCTCTCACCAACCCCCATCTCACGCGCCACACACCATCCCCATCCACCACGCGCCTCTCTTCTCTCCCATCCACCATCACCCTCAACCGCACCCTCACTCCCACAACCCACCTCTCTCAATCCCACCACCTCCGCCACACCGCTATCCATGCCTCCGTCTCCGCACCACCGTCAACCACCACAGACTCATCTCTCGTTGAGAAATCAGTCAACACGATCCGTTTCCTCGCGGTTGATTCCGTTGAAAAAGCTAACTCGGGTCACCCTGGTTTGCCTATGGGTTGTGCTCCATTGGGTCATGTGCTTTATGATGAGGTTATGAGATATAACCCCAAGAATCCGTTTTGGTTTAACCGTGATCGGTTTGTTTTGTCTGCTGGTCATGGTTGTATGCTTCAGTATGCTTTGCTTCATCTTGCTGGATATGACAGTGTTCAGGTAGAAGATTTGAAGCAATTTCGTCAATGGGAGAGCAGAACCCCTGGACACCCTGAGAATTTTGAGACTCCTGGAATTGAAGTCACAACAGGTCCTCTTGGTCAGGGCATTGCCAATGCTGTTGGTTTAGCCCTTGCAGAGAAACACTTAGCTGCCAGATTTAACAAGACCGACAATGAGATCATCGATCATTACACGTATTGTATATTGGGTGATGGTTGTCAAATGGAGGGAATTGCAAATGAAGCTTGCTCACTTGCAGGACACTGGGGACTAGGGAAGCTAATAGCATTTTACGATGACAATCACATTTCTATTGACGGTGACACCGAAATCGCGTTCACTGAGAGTGTTGAAAAACGTTTTGAGGGACTTGGGTGGCATGTTATTTGGGTAAAGAATGGAAACACTGGCTTTGATGAAATTCGTGCTGCCATTAAGGAAGCAAAAGCTGTCAAAGACAGACCCACATTGATCAAGTTCACAACAACTATTGGTTATGGTTCTCCGAATAAATCCAACTCCTACAGTGTGCATGGAAGTGCACTTGGTGCCAAAGAAGTTGATGCCACAAGAAACAATCTTGGATGGCCATATGAGCCTTTCCACGTGCCCGAGGATGTCAAAAAGCATTGGAGTCGCCACATCCGTGAGGGTGCTGCTCTTGAATCTGAGTGGAATGCCAAGTTTGCTGAATATGAAAAGAAGTACAAGGAGGAAGCTGCCGTTTTGAAATCTATCATCAGTGGCGATTTACCTGCTGGTTGGGAGAAAGCACTTCCGACTTACACTCCAGAGATCCCTGCCGATGCAACCCGAAACCTATCGCAGCAAAACCTTAATGCCCTTGCGAATGTTCTTCCCGGTCTGATTGGTGGCAGTGCAGATCTTGCTTCTTCCAATATGACCTTGCTGAAAAAGTTTGGTGATTTCCAAAGTGATTCTCCAGCAGAGCGTAACGTTAGATTTGGTGTTAGAGAACATGGAATGGGAGCAATCAGCAATGGCATCGCTCTTCACAGCCGTGGACTTATTCCATACTGTGCAACCTTTTTTGTTTTCACCGACTACATGCGTGGTGCCATTAGGCTTTCCGCCCTATCCGAAGCCGGTGTTATATATGTCATGACTCACGATTCAATAGGACTTGGAGAGGATGGACCAACCCACCAGCCTATAGAGCACCTGGCAAGCTTCCGGGCAATGCCAAATATCTTGATGCTCCGCCCCGCTGACGGTAACGAAACAGCTGGAGCATACAAAGTTGCGGTGCTTAGCAGGAAGAGACCCTCTATCCTTGCCCTTTCTAGACAAAAATTGCCTAACCTTGCCGGAACTTCTATTGAAGGAGTTGAAAAGGGTGGATACATCGTCTCTGACAACTCAACAGGAAACAAACCTGATATCATTTTGATTGGAACTGGTTCCGAATTGGAAATTGCATACAAAGCTGGTGAGGATCTAAGAAAAGAAGGAAAGGCTGTTAGAGTTGTTTCCTTTGTTTCTTGGGAACTTTTTGATGAACAATCGCAAGCTTACAAGGAAAGTGTTCTCCCTACTGCTGTTACGGCTAGGGTAAGCATTGAGGCTGGATCAACATTCGGGTGGGAGAAAATTATTGGAAGCAAAGGAAAAGCAATCGGCATTGATCGTTTTGGAGCTAGTGCTCCTGCAGGAACAATATACAAAGAGTTTGGCATCACTAAAGAAGCTGTTATTGCTGCAGCAAAAGAGCTTATTTAG
Protein sequence

>Msa0595530

MSSTSTSLSLTNPHLTRHTPSPSTTRLSSLPSTITLNRTLTPTTHLSQSHHLRHTAIHASVSAPPSTTTDSSLVEKSVNTIRFLAVDSVEKANSGHPGLPMGCAPLGHVLYDEVMRYNPKNPFWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQVEDLKQFRQWESRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKTDNEIIDHYTYCILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTESVEKRFEGLGWHVIWVKNGNTGFDEIRAAIKEAKAVKDRPTLIKFTTTIGYGSPNKSNSYSVHGSALGAKEVDATRNNLGWPYEPFHVPEDVKKHWSRHIREGAALESEWNAKFAEYEKKYKEEAAVLKSIISGDLPAGWEKALPTYTPEIPADATRNLSQQNLNALANVLPGLIGGSADLASSNMTLLKKFGDFQSDSPAERNVRFGVREHGMGAISNGIALHSRGLIPYCATFFVFTDYMRGAIRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVLSRKRPSILALSRQKLPNLAGTSIEGVEKGGYIVSDNSTGNKPDIILIGTGSELEIAYKAGEDLRKEGKAVRVVSFVSWELFDEQSQAYKESVLPTAVTARVSIEAGSTFGWEKIIGSKGKAIGIDRFGASAPAGTIYKEFGITKEAVIAAAKELI*