AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0412580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0412580 MtrunA17_Chr3g0104361 98.062 516 6 1 1 512 1 516 0.0 1023
Msa0412580 MtrunA17_Chr8g0348761 75.983 458 103 1 62 512 131 588 0.0 733
Msa0412580 MtrunA17_Chr7g0247871 78.704 432 92 0 81 512 103 534 0.0 729
Msa0412580 MtrunA17_Chr7g0241591 39.909 441 262 2 74 511 66 506 1.96e-112 342
Msa0412580 MtrunA17_Chr4g0064801 38.067 507 291 11 16 508 27 524 1.91e-109 335
Msa0412580 MtrunA17_Chr5g0429461 41.045 402 230 2 116 510 189 590 1.88e-95 301
Msa0412580 MtrunA17_Chr4g0013731 37.868 441 246 7 99 512 4 443 4.21e-83 265
Msa0412580 MtrunA17_Chr2g0290941 84.091 132 21 0 344 475 1 132 1.42e-77 240
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0412580 AT2G29650.1 76.893 515 113 2 1 512 1 512 0.0 781
Msa0412580 AT4G00370.1 76.484 455 103 1 62 512 87 541 0.0 732
Msa0412580 AT2G29650.3 87.310 394 50 0 119 512 7 400 0.0 708
Msa0412580 AT2G29650.4 87.692 390 48 0 123 512 1 390 0.0 703
Msa0412580 AT2G29650.2 72.319 401 105 2 1 398 1 398 0.0 561
Msa0412580 AT2G38060.1 38.900 509 277 8 29 510 10 511 6.29e-113 344
Msa0412580 AT5G20380.1 38.831 479 277 8 43 508 33 508 2.66e-106 327
Msa0412580 AT3G46980.1 40.000 470 269 5 54 510 58 527 4.14e-106 327
Msa0412580 AT3G46980.3 40.000 470 269 5 54 510 58 527 4.60e-106 327
Msa0412580 AT5G20380.2 38.831 479 277 8 43 508 85 560 7.47e-106 328
Msa0412580 AT3G46980.4 40.000 470 269 5 54 510 106 575 9.99e-106 328
Msa0412580 AT2G38060.2 39.659 411 236 3 52 457 54 457 1.40e-95 301
Msa0412580 AT3G46980.8 40.634 347 198 3 172 510 1 347 6.13e-83 261
Msa0412580 AT3G46980.2 40.634 347 198 3 172 510 1 347 6.13e-83 261
Msa0412580 AT3G46980.5 40.634 347 198 3 172 510 1 347 6.19e-83 261
Msa0412580 AT3G46980.7 40.634 347 198 3 172 510 1 347 6.19e-83 261
Msa0412580 AT5G44370.1 36.322 435 246 7 100 512 7 432 1.81e-80 258
Msa0412580 AT3G46980.6 38.298 282 166 3 237 510 2 283 7.26e-60 199

Find 157 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGCAATTTCTGCAAATTT+TGG 0.155639 3_2:-56012215 Msa0412580:CDS
TATGAATTTCCCACCAAATA+TGG 0.180418 3_2:+56010326 None:intergenic
TAGTACAGTCTTCTTTCTTT+TGG 0.193133 3_2:-56013887 Msa0412580:CDS
TGAATAATATTCTGTCAAAA+TGG 0.210887 3_2:-56013434 Msa0412580:CDS
GGCAAAAGTGGGACACTATC+AGG 0.253332 3_2:+56012964 None:intergenic
ATGCAAACAGTTGGGTTTCT+TGG 0.260195 3_2:-56012036 Msa0412580:CDS
TGCAGATTGCTGGTGGAATA+TGG 0.288175 3_2:-56013755 Msa0412580:intron
GGTTTCAGTTGGGCTATATT+TGG 0.289577 3_2:-56010661 Msa0412580:CDS
CCTTTCCTGATTCACCAGTA+TGG 0.295712 3_2:-56013327 Msa0412580:CDS
AAGTTCAATCTTACAGAATC+TGG 0.297006 3_2:-56012266 Msa0412580:CDS
ATAACAATAACCCATCTCTT+AGG 0.357009 3_2:+56015163 None:intergenic
AATCCACTTACAGAATATCT+AGG 0.360361 3_2:+56011332 None:intergenic
ATTAGTTGCCCGTGCATTCA+TGG 0.371690 3_2:-56013628 Msa0412580:CDS
GTTTGGCAGCTACCGGAGTT+AGG 0.372393 3_2:+56013667 None:intergenic
TAGAAAAGGCAATCCAAGTT+TGG 0.374667 3_2:+56013650 None:intergenic
ATCTAGGGGCTATATCTTGA+TGG 0.391646 3_2:+56011348 None:intergenic
GCCATCCATACTGGTGAATC+AGG 0.393766 3_2:+56013322 None:intergenic
TATTTCCTTCACAGGTTCCT+TGG 0.393829 3_2:+56013025 None:intergenic
GAACATGAAGATATACAATA+AGG 0.394097 3_2:+56010355 None:intergenic
AGATACTTGTTGCAGATTGC+TGG 0.402333 3_2:-56013765 Msa0412580:intron
TTGGTTCTCTAGGAACAGTT+TGG 0.409152 3_2:-56013281 Msa0412580:CDS
ACACGAGTCCTTGTTGGCCT+TGG 0.412608 3_2:-56010406 Msa0412580:three_prime_UTR
TGAATGGTTGAGGTTTGTTC+TGG 0.413113 3_2:+56015387 None:intergenic
CAATGTCAGCAGAGTACAAC+TGG 0.414950 3_2:-56013929 Msa0412580:CDS
TGTCACAAAATTGATGTGTT+TGG 0.419451 3_2:+56010256 None:intergenic
GCCCGTGCATTCATGGGAAT+TGG 0.421683 3_2:-56013621 Msa0412580:CDS
ACCTGTGAAGGAAATACCTT+GGG 0.422628 3_2:-56013018 Msa0412580:CDS
TAAGAAAGTAGTAAGTGGTT+TGG 0.423850 3_2:-56015242 Msa0412580:CDS
AGAACTACAAGAGAAGAAAA+TGG 0.424802 3_2:-56010518 Msa0412580:three_prime_UTR
AGCTAGCACTCCAGCAGTAT+TGG 0.431527 3_2:+56011171 None:intergenic
CCCCAAGGTATTTCCTTCAC+AGG 0.432539 3_2:+56013017 None:intergenic
ACACTGATGGCCATCCATAC+TGG 0.434066 3_2:+56013313 None:intergenic
CCGATTACACGAGTCCTTGT+TGG 0.437307 3_2:-56010412 Msa0412580:three_prime_UTR
TTTGTCGAAACCACCGGTCT+GGG 0.438410 3_2:-56012988 Msa0412580:CDS
AAGAAGTTGATTGCTACAAA+TGG 0.439320 3_2:-56013053 Msa0412580:CDS
ACTCCGGTAGCTGCCAAACT+TGG 0.440722 3_2:-56013663 Msa0412580:CDS
GAACTTTCATTCTTCTTACA+TGG 0.440920 3_2:-56012932 Msa0412580:CDS
GTCCTTGGAACAGCAGCAAC+AGG 0.445368 3_2:-56011145 Msa0412580:CDS
GAATAATATTCTGTCAAAAT+GGG 0.446232 3_2:-56013433 Msa0412580:CDS
TGCAGATAATGCAAACAGTT+GGG 0.451193 3_2:-56012044 Msa0412580:intron
CTTACTTGATTATAGTATGT+TGG 0.454637 3_2:+56012906 None:intergenic
ATGAATTTCCCACCAAATAT+GGG 0.454669 3_2:+56010327 None:intergenic
ACGGAGAAGGTGAATGGTTG+AGG 0.454848 3_2:+56015377 None:intergenic
GGAGTGCTAGCTGGTGTCCT+TGG 0.456716 3_2:-56011160 Msa0412580:CDS
GTTGGCCTTGGAAGAAGGAT+TGG 0.457166 3_2:-56010394 Msa0412580:three_prime_UTR
CCAACAAGGACTCGTGTAAT+CGG 0.458293 3_2:+56010412 None:intergenic
TTGCAGATAATGCAAACAGT+TGG 0.460476 3_2:-56012045 Msa0412580:intron
TCCTTGTTGGCCTTGGAAGA+AGG 0.464619 3_2:-56010399 Msa0412580:three_prime_UTR
ACTGACGCATTCTCGCAGTC+TGG 0.465661 3_2:-56011383 Msa0412580:CDS
TCAGTTGGGCTATATTTGGT+TGG 0.470220 3_2:-56010657 Msa0412580:CDS
ACACCTTCCCTCTTCCTCTC+CGG 0.472346 3_2:+56015332 None:intergenic
ATGTACCTTGGATCGGTCAC+TGG 0.477619 3_2:-56013363 Msa0412580:CDS
ATCCACTTACAGAATATCTA+GGG 0.477960 3_2:+56011333 None:intergenic
CTCGGTCTATCCAATACTGC+TGG 0.479482 3_2:-56011181 Msa0412580:CDS
CTGTGTCACCGGAGAGGAAG+AGG 0.479989 3_2:-56015340 Msa0412580:CDS
TTCCCCAGTTGTGGCAAAAG+TGG 0.480489 3_2:+56012952 None:intergenic
TAGCATTTGGCGTCATTTGG+TGG 0.480914 3_2:-56013704 Msa0412580:CDS
GCAGATTGCTGGTGGAATAT+GGG 0.485868 3_2:-56013754 Msa0412580:intron
TTACTAGGGTGTTGCTATGC+CGG 0.487176 3_2:-56013460 Msa0412580:intron
CCTTGGATCGGTCACTGGAT+TGG 0.489429 3_2:-56013358 Msa0412580:CDS
TCATACTTACTTGATGCCTC+TGG 0.490752 3_2:+56015280 None:intergenic
CCCGAGGTGTATCTGTTACA+AGG 0.491771 3_2:-56012166 Msa0412580:CDS
CATTGCACCTGCTGTGTCAC+CGG 0.492613 3_2:-56015351 Msa0412580:CDS
TTCCTCTCCGGTGACACAGC+AGG 0.496137 3_2:+56015344 None:intergenic
AGTTGAGTTAAGAAGAAAGC+AGG 0.501347 3_2:+56012012 None:intergenic
GTTGTGTATGACTTGCAGTC+AGG 0.504023 3_2:-56011959 Msa0412580:intron
GTGAATCAGGAAAGGTGAAA+AGG 0.509896 3_2:+56013335 None:intergenic
GAAGAAGAAGAAGGTGATGG+TGG 0.511806 3_2:+56015427 None:intergenic
CACAGCAGGTGCAATGGAAA+CGG 0.512666 3_2:+56015358 None:intergenic
AATCCAAGTTTGGCAGCTAC+CGG 0.516950 3_2:+56013660 None:intergenic
TTAGTTGCCCGTGCATTCAT+GGG 0.520099 3_2:-56013627 Msa0412580:CDS
GTTCATAAGAAAGTAGTAAG+TGG 0.520316 3_2:-56015247 Msa0412580:CDS
GACTGAGTCTTCACCTTGGT+GGG 0.521574 3_2:-56015194 Msa0412580:CDS
GACAGAATATTATTCATGGC+CGG 0.522317 3_2:+56013441 None:intergenic
GCACGGGCAACTAATAGAAA+AGG 0.522495 3_2:+56013636 None:intergenic
TCCTGATTCACCAGTATGGA+TGG 0.522690 3_2:-56013323 Msa0412580:CDS
GTCAAAATGGGTTCCTGTGG+CGG 0.524511 3_2:-56013421 Msa0412580:CDS
CACCAATTCCCATGAATGCA+CGG 0.527914 3_2:+56013619 None:intergenic
GGAGAGGAAGAGGGAAGGTG+TGG 0.529959 3_2:-56015330 Msa0412580:CDS
TCCTTCTTCCAAGGCCAACA+AGG 0.536020 3_2:+56010398 None:intergenic
GAGAGGAAGAGGGAAGGTGT+GGG 0.541836 3_2:-56015329 Msa0412580:CDS
AATACTGCTGGAGTGCTAGC+TGG 0.544126 3_2:-56011169 Msa0412580:CDS
GAGAAGTAGATCATTAGCTC+TGG 0.544905 3_2:-56013397 Msa0412580:CDS
TTTGGATGGTGTTGATGTTG+AGG 0.547494 3_2:-56015224 Msa0412580:CDS
AACCTGTGAAGGAAATACCT+TGG 0.548334 3_2:-56013019 Msa0412580:CDS
TGACTGAGTCTTCACCTTGG+TGG 0.550807 3_2:-56015195 Msa0412580:CDS
GATCTACTTCTCTCCGCCAC+AGG 0.551084 3_2:+56013408 None:intergenic
AGAGGCATCAAGTAAGTATG+AGG 0.551649 3_2:-56015278 Msa0412580:CDS
CTTGAGTACTTTCTCACAGA+AGG 0.552373 3_2:-56010541 Msa0412580:three_prime_UTR
GAATGAAAGTTCCCCAGTTG+TGG 0.554343 3_2:+56012943 None:intergenic
GTATACAGTGGTATGTACCT+TGG 0.554978 3_2:-56013375 Msa0412580:CDS
CAGTTGTACTCTGCTGACAT+TGG 0.556876 3_2:+56013930 None:intergenic
CCACATTGATTCTCCTGTGG+TGG 0.558004 3_2:-56011986 Msa0412580:CDS
CGGTGACACAGCAGGTGCAA+TGG 0.559969 3_2:+56015352 None:intergenic
CGGAGTTAGGATTGTGGCAA+CGG 0.561005 3_2:+56013680 None:intergenic
ATCTGTTACAAGGGTTCGCA+AGG 0.562047 3_2:-56012156 Msa0412580:intron
AAAGTAGTAAGTGGTTTGGA+TGG 0.562988 3_2:-56015238 Msa0412580:CDS
TTGGGGATACCTCCTCACTC+AGG 0.564095 3_2:-56013868 Msa0412580:intron
ATGTTAAGTCTGAGAAGCAT+GGG 0.564348 3_2:-56015303 Msa0412580:CDS
AGTGGTGAAGAAGAAGAAGA+AGG 0.565187 3_2:+56015418 None:intergenic
TCTTCTCAGGGGATATTGCT+CGG 0.566814 3_2:-56011199 Msa0412580:intron
GGAATATGGGCTGACACAGT+GGG 0.567890 3_2:-56013741 Msa0412580:CDS
AGGTGCAATGGAAACGGAGA+AGG 0.568561 3_2:+56015364 None:intergenic
CCGAGGTGTATCTGTTACAA+GGG 0.569335 3_2:-56012165 Msa0412580:CDS
TGTACTAAACCTACAGTGGT+GGG 0.573906 3_2:+56013903 None:intergenic
ACCAATTCCCATGAATGCAC+GGG 0.574833 3_2:+56013620 None:intergenic
GTCTGAGAAGCATGGGCCAG+AGG 0.575496 3_2:-56015296 Msa0412580:CDS
CTAATCCAATCCTTCTTCCA+AGG 0.576037 3_2:+56010389 None:intergenic
TTCGACAAAATTAATCCCCA+AGG 0.576040 3_2:+56013002 None:intergenic
TGGAATATGGGCTGACACAG+TGG 0.577010 3_2:-56013742 Msa0412580:CDS
TCCCCAGTTGTGGCAAAAGT+GGG 0.577515 3_2:+56012953 None:intergenic
AACTGTTCCTAGAGAACCAA+AGG 0.579562 3_2:+56013284 None:intergenic
GACACTATCAGGGCCCAGAC+CGG 0.582554 3_2:+56012975 None:intergenic
CGCATTTCAGGATCATCAAG+TGG 0.585309 3_2:+56013086 None:intergenic
CTGTACTAAACCTACAGTGG+TGG 0.586896 3_2:+56013902 None:intergenic
GATGTTAAGTCTGAGAAGCA+TGG 0.588801 3_2:-56015304 Msa0412580:CDS
GCAAAAGTGGGACACTATCA+GGG 0.591083 3_2:+56012965 None:intergenic
TGTGTCACCGGAGAGGAAGA+GGG 0.604856 3_2:-56015339 Msa0412580:CDS
TACTTGTTGCAGATTGCTGG+TGG 0.606708 3_2:-56013762 Msa0412580:intron
CAGTGGTATGTACCTTGGAT+CGG 0.607929 3_2:-56013370 Msa0412580:CDS
CCAATCCAGTGACCGATCCA+AGG 0.609770 3_2:+56013358 None:intergenic
AACCTGTTGCTGCTGTTCCA+AGG 0.609936 3_2:+56011143 None:intergenic
GCTATATTTGGTTGGAACCG+TGG 0.610518 3_2:-56010649 Msa0412580:CDS
ATGGAAACGGAGAAGGTGAA+TGG 0.615461 3_2:+56015371 None:intergenic
CCCTTGTAACAGATACACCT+CGG 0.616464 3_2:+56012165 None:intergenic
AACTGGAACCCCACCACTGT+AGG 0.618941 3_2:-56013912 Msa0412580:CDS
GTTGAGTTAAGAAGAAAGCA+GGG 0.621263 3_2:+56012013 None:intergenic
CCTTGTAACAGATACACCTC+GGG 0.624936 3_2:+56012166 None:intergenic
CGTTGCCACAATCCTAACTC+CGG 0.625961 3_2:-56013679 Msa0412580:CDS
CCAAAGGAGTAAAACACTGA+TGG 0.628506 3_2:+56013300 None:intergenic
ACAGGTTACATTCTGCAGCA+TGG 0.629656 3_2:-56011127 Msa0412580:intron
CCATACTGGTGAATCAGGAA+AGG 0.630298 3_2:+56013327 None:intergenic
ACTATCAGGGCCCAGACCGG+TGG 0.630408 3_2:+56012978 None:intergenic
TCTGTCAAAATGGGTTCCTG+TGG 0.632474 3_2:-56013424 Msa0412580:CDS
GAAATTGCCATAGTAAGCCA+TGG 0.638270 3_2:+56012227 None:intergenic
ATTTGGTTGGAACCGTGGTG+TGG 0.639464 3_2:-56010644 Msa0412580:CDS
TTTGTTCTGGTACGTGACAG+TGG 0.645348 3_2:+56015400 None:intergenic
CACTTGATGATCCTGAAATG+CGG 0.647130 3_2:-56013085 Msa0412580:CDS
TGCATTCATGGGAATTGGTG+AGG 0.647999 3_2:-56013616 Msa0412580:intron
ATACACAACACAGCCACCAC+AGG 0.650207 3_2:+56011973 None:intergenic
GTACTAAACCTACAGTGGTG+GGG 0.651673 3_2:+56013904 None:intergenic
AGCTACCGGAGTTAGGATTG+TGG 0.654301 3_2:+56013674 None:intergenic
TGTGTTGTGTGACAAAGTAT+CGG 0.654494 3_2:+56010575 None:intergenic
CACCTGCTGTGTCACCGGAG+AGG 0.665468 3_2:-56015346 Msa0412580:CDS
GAGCCACATTGATTCTCCTG+TGG 0.666663 3_2:-56011989 Msa0412580:CDS
AGACTGTACTAAACCTACAG+TGG 0.666932 3_2:+56013899 None:intergenic
TCACCGGAGAGGAAGAGGGA+AGG 0.672873 3_2:-56015335 Msa0412580:CDS
TCCACTTACAGAATATCTAG+GGG 0.679967 3_2:+56011334 None:intergenic
TGAAACCACATACCTGAGTG+AGG 0.683840 3_2:+56013856 None:intergenic
GCAGACACTCTTGTAACCCG+AGG 0.688978 3_2:-56012182 Msa0412580:CDS
ATATGGGCTGACACAGTGGG+AGG 0.689041 3_2:-56013738 Msa0412580:CDS
CGAGAAAAGGTTCCACACCA+CGG 0.697691 3_2:+56010632 None:intergenic
TCATTAGCTCTGGTATACAG+TGG 0.697906 3_2:-56013387 Msa0412580:CDS
AAGTGACTGAGTCTTCACCT+TGG 0.704980 3_2:-56015198 Msa0412580:CDS
AACCACATACCTGAGTGAGG+AGG 0.707329 3_2:+56013859 None:intergenic
CCACCACAGGAGAATCAATG+TGG 0.729771 3_2:+56011986 None:intergenic
CCTGTGAAGGAAATACCTTG+GGG 0.772599 3_2:-56013017 Msa0412580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAAATTACAAAATAGT+TGG - chr3_2:56010653-56010672 Msa0412580:CDS 10.0%
!! TTTAAATATATTCATAGAAG+AGG + chr3_2:56010641-56010660 None:intergenic 15.0%
!! GAATAAATCAAGTATAAATA+TGG + chr3_2:56013353-56013372 None:intergenic 15.0%
!!! TATTTTCAAATTTATATCAC+AGG - chr3_2:56013423-56013442 Msa0412580:CDS 15.0%
!! TTATTCTTACTAAATGTTAA+TGG - chr3_2:56014633-56014652 Msa0412580:intron 15.0%
!! ATTACAAAATAGTTGGATAT+TGG - chr3_2:56010660-56010679 Msa0412580:CDS 20.0%
!! AAGTGAAATGTAATTGATTA+AGG - chr3_2:56011051-56011070 Msa0412580:intron 20.0%
!! AGTGAAATGTAATTGATTAA+GGG - chr3_2:56011052-56011071 Msa0412580:intron 20.0%
!! AAAACAGTTTATAGCTTATA+CGG - chr3_2:56011184-56011203 Msa0412580:CDS 20.0%
!! AATAAGTTGTTTATCCAAAT+AGG - chr3_2:56011265-56011284 Msa0412580:intron 20.0%
!! ATAAGTTGTTTATCCAAATA+GGG - chr3_2:56011266-56011285 Msa0412580:intron 20.0%
!! GTTAAAAACTAATCTAAACT+AGG + chr3_2:56011299-56011318 None:intergenic 20.0%
!!! TTAGATTAGTTTTTAACCTA+TGG - chr3_2:56011302-56011321 Msa0412580:intron 20.0%
!! TTTCATTCTTATTAACTAAG+AGG - chr3_2:56011348-56011367 Msa0412580:CDS 20.0%
!! TCAAATCATTACTAATATCA+GGG + chr3_2:56012167-56012186 None:intergenic 20.0%
!! ATCAAATCATTACTAATATC+AGG + chr3_2:56012168-56012187 None:intergenic 20.0%
!! AATGATTTGATTCATATAGT+TGG - chr3_2:56012177-56012196 Msa0412580:CDS 20.0%
!!! TTTTGACAGAATATTATTCA+TGG + chr3_2:56012283-56012302 None:intergenic 20.0%
!! TGAATAATATTCTGTCAAAA+TGG - chr3_2:56012283-56012302 Msa0412580:intron 20.0%
!! GAATAATATTCTGTCAAAAT+GGG - chr3_2:56012284-56012303 Msa0412580:intron 20.0%
!!! CAAGTAAGTTTTTCTTTTTT+TGG - chr3_2:56012826-56012845 Msa0412580:intron 20.0%
!! AAAGAAATAGTTTCAATTTG+TGG + chr3_2:56012980-56012999 None:intergenic 20.0%
!! GTTTATTAATAGAAATACCT+TGG + chr3_2:56013035-56013054 None:intergenic 20.0%
!! ATGATAATTTCTCAATTCAA+TGG + chr3_2:56013211-56013230 None:intergenic 20.0%
!! AAGAAAAACTAAAAAAGAGA+AGG + chr3_2:56013608-56013627 None:intergenic 20.0%
!! AACTCTATTATATCTCTTAA+TGG - chr3_2:56014679-56014698 Msa0412580:intron 20.0%
!!! TAAGATTTCATCAAAGTATT+AGG + chr3_2:56014965-56014984 None:intergenic 20.0%
!! TGCTTTTCTTCTATGTAATA+TGG - chr3_2:56010589-56010608 Msa0412580:exon 25.0%
! GTAGATACACTTACTAATTT+AGG - chr3_2:56010744-56010763 Msa0412580:intron 25.0%
! AGGTAAAAATTAAATGTGCA+TGG + chr3_2:56010981-56011000 None:intergenic 25.0%
!!! ATGCACATTTAATTTTTACC+TGG - chr3_2:56010980-56010999 Msa0412580:intron 25.0%
! GTTATTACTCGTATTGTAAT+TGG - chr3_2:56011022-56011041 Msa0412580:intron 25.0%
!! TTTTCAGCTTATAGGATTAT+AGG - chr3_2:56011151-56011170 Msa0412580:CDS 25.0%
! CTTATAGGATTATAGGATAA+CGG - chr3_2:56011158-56011177 Msa0412580:CDS 25.0%
! ATTCACAATCCTTCATATTA+CGG - chr3_2:56011463-56011482 Msa0412580:intron 25.0%
!! CATAAAAAACCTTGATGTTT+TGG - chr3_2:56011505-56011524 Msa0412580:intron 25.0%
!!! AGAAACTGTTTTTGAAATAC+TGG - chr3_2:56011543-56011562 Msa0412580:intron 25.0%
!! CTTGTTACTTAGAAGATTTA+TGG - chr3_2:56011595-56011614 Msa0412580:intron 25.0%
! ATTTATGGCTATGTAATCAT+AGG - chr3_2:56011610-56011629 Msa0412580:intron 25.0%
! TTTATGGCTATGTAATCATA+GGG - chr3_2:56011611-56011630 Msa0412580:intron 25.0%
!! AACTTCTTTTTGATCTTACT+AGG - chr3_2:56012242-56012261 Msa0412580:CDS 25.0%
!! ACTTCTTTTTGATCTTACTA+GGG - chr3_2:56012243-56012262 Msa0412580:CDS 25.0%
! TGCTTCCTTTATGAAATATA+TGG - chr3_2:56012520-56012539 Msa0412580:intron 25.0%
!!! CCAAATTTCTGTGTTTTTTT+GGG - chr3_2:56012588-56012607 Msa0412580:intron 25.0%
! CTTACTTGATTATAGTATGT+TGG + chr3_2:56012814-56012833 None:intergenic 25.0%
!! ATGATAAGCAAATGTACTTT+TGG - chr3_2:56012948-56012967 Msa0412580:CDS 25.0%
! AGAAGATAATCAACCTAAAA+GGG + chr3_2:56013156-56013175 None:intergenic 25.0%
! AAGAAGATAATCAACCTAAA+AGG + chr3_2:56013157-56013176 None:intergenic 25.0%
! CAATAGATTATGTTACTATC+AGG + chr3_2:56013235-56013254 None:intergenic 25.0%
! GTCTCATCATTAAATATTTC+TGG - chr3_2:56013866-56013885 Msa0412580:intron 25.0%
!! GCTTAACATCATCTAAAATT+AGG - chr3_2:56014238-56014257 Msa0412580:intron 25.0%
! AGGAAAAATTTAAACAAGTG+AGG + chr3_2:56014305-56014324 None:intergenic 25.0%
!! TGTTTAAATTTTTCCTGAAC+AGG - chr3_2:56014309-56014328 Msa0412580:intron 25.0%
!! GTTTAAATTTTTCCTGAACA+GGG - chr3_2:56014310-56014329 Msa0412580:intron 25.0%
! ATTTCCTATATATCTTCTCA+GGG - chr3_2:56014506-56014525 Msa0412580:intron 25.0%
! ATGTTAATGGTCAATTATCT+CGG - chr3_2:56014646-56014665 Msa0412580:intron 25.0%
! AGAAATATATACTCATTCCT+GGG + chr3_2:56014875-56014894 None:intergenic 25.0%
!!! CAATCTGAAAAGTATCAATT+TGG - chr3_2:56014903-56014922 Msa0412580:intron 25.0%
! AAATAAGTAAAGAGAATGGA+AGG + chr3_2:56015010-56015029 None:intergenic 25.0%
! CTGAAAATAAGTAAAGAGAA+TGG + chr3_2:56015014-56015033 None:intergenic 25.0%
!!! CATTCTCTTTACTTATTTTC+AGG - chr3_2:56015012-56015031 Msa0412580:intron 25.0%
!! ACAAAATTTACCATTTTGTC+CGG + chr3_2:56015261-56015280 None:intergenic 25.0%
! GAACATGAAGATATACAATA+AGG + chr3_2:56015365-56015384 None:intergenic 25.0%
GTTCATAAGAAAGTAGTAAG+TGG - chr3_2:56010470-56010489 Msa0412580:three_prime_UTR 30.0%
TAAGAAAGTAGTAAGTGGTT+TGG - chr3_2:56010475-56010494 Msa0412580:three_prime_UTR 30.0%
ATAACAATAACCCATCTCTT+AGG + chr3_2:56010557-56010576 None:intergenic 30.0%
AACTTAACGAGTTAGTTAGT+TGG + chr3_2:56010929-56010948 None:intergenic 30.0%
!! ATTTAATTTTTACCTGGTCC+AGG - chr3_2:56010986-56011005 Msa0412580:intron 30.0%
ACTTATTTGAGCTTATCTAC+CGG - chr3_2:56011088-56011107 Msa0412580:intron 30.0%
!! ATAAGCTGTTTTCAGCTTAT+AGG - chr3_2:56011143-56011162 Msa0412580:CDS 30.0%
ACTAATCTAAACTAGGCTTA+AGG + chr3_2:56011292-56011311 None:intergenic 30.0%
CTCTAATTAGAAACTTCCAT+AGG + chr3_2:56011321-56011340 None:intergenic 30.0%
! CAGTTATTTCCAAAACATCA+AGG + chr3_2:56011517-56011536 None:intergenic 30.0%
!!! TGATGTTTTGGAAATAACTG+TGG - chr3_2:56011517-56011536 Msa0412580:intron 30.0%
! TTTGCTCTTTTCACATTTAC+AGG - chr3_2:56011741-56011760 Msa0412580:intron 30.0%
! TAGTACAGTCTTCTTTCTTT+TGG - chr3_2:56011830-56011849 Msa0412580:intron 30.0%
! AGTACAGTCTTCTTTCTTTT+GGG - chr3_2:56011831-56011850 Msa0412580:intron 30.0%
GGCTTGTAGTTCAAAATTAA+GGG + chr3_2:56011913-56011932 None:intergenic 30.0%
! TGGCTTGTAGTTCAAAATTA+AGG + chr3_2:56011914-56011933 None:intergenic 30.0%
! TAATTTTGAACTACAAGCCA+TGG - chr3_2:56011914-56011933 Msa0412580:intron 30.0%
ACTAATATCAGGGACAATAT+CGG + chr3_2:56012157-56012176 None:intergenic 30.0%
! AAAAAGAAGTTAGCTTCACA+TGG + chr3_2:56012233-56012252 None:intergenic 30.0%
!!! GAACAGTTTGGTTTTGTATA+TGG - chr3_2:56012448-56012467 Msa0412580:intron 30.0%
! GTTTTGTATATGGCTTAGTA+AGG - chr3_2:56012458-56012477 Msa0412580:intron 30.0%
!! TAAAGGAAGCATTTATGTGA+AGG + chr3_2:56012511-56012530 None:intergenic 30.0%
CGTGTCCATATATTTCATAA+AGG + chr3_2:56012528-56012547 None:intergenic 30.0%
!!! GCCAAATTTCTGTGTTTTTT+TGG - chr3_2:56012587-56012606 Msa0412580:intron 30.0%
CCCAAAAAAACACAGAAATT+TGG + chr3_2:56012591-56012610 None:intergenic 30.0%
! AAGAAGTTGATTGCTACAAA+TGG - chr3_2:56012664-56012683 Msa0412580:intron 30.0%
! ATTAATTTTGTCGAAACCAC+CGG - chr3_2:56012723-56012742 Msa0412580:intron 30.0%
GAACTTTCATTCTTCTTACA+TGG - chr3_2:56012785-56012804 Msa0412580:intron 30.0%
TGTTTACTAAGTATGCTGTT+TGG - chr3_2:56012851-56012870 Msa0412580:intron 30.0%
! TAAGCAAATGTACTTTTGGT+TGG - chr3_2:56012952-56012971 Msa0412580:CDS 30.0%
!!! CTTTTAGTTTTTACAGTCCA+AGG - chr3_2:56013015-56013034 Msa0412580:CDS 30.0%
! GGCATTTTCACAAATAGAAT+CGG + chr3_2:56013190-56013209 None:intergenic 30.0%
AAGTTCAATCTTACAGAATC+TGG - chr3_2:56013451-56013470 Msa0412580:CDS 30.0%
! ATGGCAATTTCTGCAAATTT+TGG - chr3_2:56013502-56013521 Msa0412580:intron 30.0%
GAGAAGGAAAAAAAGTTGAA+GGG + chr3_2:56013592-56013611 None:intergenic 30.0%
AGAGAAGGAAAAAAAGTTGA+AGG + chr3_2:56013593-56013612 None:intergenic 30.0%
!!! GTTTGCTTCTTGTTTTGTAT+TGG - chr3_2:56013780-56013799 Msa0412580:intron 30.0%
TTGCGAATAGCAGAAAATAA+TGG - chr3_2:56013933-56013952 Msa0412580:CDS 30.0%
GAGATTATGTTGTCAAATAG+TGG + chr3_2:56014099-56014118 None:intergenic 30.0%
AGAAAGTTCAATGGAACTAA+TGG + chr3_2:56014278-56014297 None:intergenic 30.0%
ATCCACTTACAGAATATCTA+GGG + chr3_2:56014387-56014406 None:intergenic 30.0%
AATCCACTTACAGAATATCT+AGG + chr3_2:56014388-56014407 None:intergenic 30.0%
CATTTCCTATATATCTTCTC+AGG - chr3_2:56014505-56014524 Msa0412580:intron 30.0%
TTTCCTATATATCTTCTCAG+GGG - chr3_2:56014507-56014526 Msa0412580:intron 30.0%
CAGAAATATATACTCATTCC+TGG + chr3_2:56014876-56014895 None:intergenic 30.0%
!! TTTACTTATTTTCAGGCTCA+TGG - chr3_2:56015019-56015038 Msa0412580:intron 30.0%
!! TTACTTATTTTCAGGCTCAT+GGG - chr3_2:56015020-56015039 Msa0412580:intron 30.0%
!! ATGTTTTCAAGGTTTCAGTT+GGG - chr3_2:56015046-56015065 Msa0412580:intron 30.0%
! TTAGTCTATGATCTTTTCAC+CGG + chr3_2:56015112-56015131 None:intergenic 30.0%
AGAACTACAAGAGAAGAAAA+TGG - chr3_2:56015199-56015218 Msa0412580:CDS 30.0%
! TCTTCATCAGAATTTTATGC+CGG - chr3_2:56015239-56015258 Msa0412580:CDS 30.0%
! GGACAAAATGGTAAATTTTG+TGG - chr3_2:56015260-56015279 Msa0412580:CDS 30.0%
! CATGTTCATTTTCCCATATT+TGG - chr3_2:56015378-56015397 Msa0412580:CDS 30.0%
! TTCATTTTCCCATATTTGGT+GGG - chr3_2:56015382-56015401 Msa0412580:CDS 30.0%
ATGAATTTCCCACCAAATAT+GGG + chr3_2:56015393-56015412 None:intergenic 30.0%
TATGAATTTCCCACCAAATA+TGG + chr3_2:56015394-56015413 None:intergenic 30.0%
TGTCACAAAATTGATGTGTT+TGG + chr3_2:56015464-56015483 None:intergenic 30.0%
! ATGTTAAGTCTGAGAAGCAT+GGG - chr3_2:56010414-56010433 Msa0412580:three_prime_UTR 35.0%
! AAAGTAGTAAGTGGTTTGGA+TGG - chr3_2:56010479-56010498 Msa0412580:three_prime_UTR 35.0%
! GGAAGTTTTTCCTAAGAGAT+GGG - chr3_2:56010544-56010563 Msa0412580:three_prime_UTR 35.0%
CATAGAAGAGGTTGAAAAAG+TGG + chr3_2:56010629-56010648 None:intergenic 35.0%
! TAGCTAACACTTTTGATGGA+AGG + chr3_2:56010852-56010871 None:intergenic 35.0%
!! AAGTTTGTTGCTAATGTACC+AGG + chr3_2:56010875-56010894 None:intergenic 35.0%
ATAACATAAACAGCTTCTCC+TGG + chr3_2:56011007-56011026 None:intergenic 35.0%
AGTACCATGAGTGTTTATTC+CGG + chr3_2:56011110-56011129 None:intergenic 35.0%
AAAAGTTCAGCTAGTGAACA+AGG - chr3_2:56011422-56011441 Msa0412580:intron 35.0%
GCAACTTTACCGTAATATGA+AGG + chr3_2:56011475-56011494 None:intergenic 35.0%
TCCAATACTCCAATGAATTG+CGG - chr3_2:56011634-56011653 Msa0412580:intron 35.0%
ACCTTAGATTAGTATTGCAG+TGG - chr3_2:56011688-56011707 Msa0412580:intron 35.0%
ACCACTGCAATACTAATCTA+AGG + chr3_2:56011692-56011711 None:intergenic 35.0%
! GTACAGTCTTCTTTCTTTTG+GGG - chr3_2:56011832-56011851 Msa0412580:intron 35.0%
CAATCTGCAACAAGTATCTA+CGG + chr3_2:56011951-56011970 None:intergenic 35.0%
!! GGAAAGCAAGTTTTAGCATT+TGG - chr3_2:56012000-56012019 Msa0412580:CDS 35.0%
! TTTTAGCATTTGGCGTCATT+TGG - chr3_2:56012010-56012029 Msa0412580:CDS 35.0%
TAGAAAAGGCAATCCAAGTT+TGG + chr3_2:56012070-56012089 None:intergenic 35.0%
CTAATATCAGGGACAATATC+GGG + chr3_2:56012156-56012175 None:intergenic 35.0%
GACAGAATATTATTCATGGC+CGG + chr3_2:56012279-56012298 None:intergenic 35.0%
!!! TTTTACTCCTTTGGTTCTCT+AGG - chr3_2:56012426-56012445 Msa0412580:intron 35.0%
! GCAATCAACTTCTTTTCTTC+TGG + chr3_2:56012658-56012677 None:intergenic 35.0%
! TGCTACAAATGGTTTTTCCA+AGG - chr3_2:56012675-56012694 Msa0412580:intron 35.0%
TTCGACAAAATTAATCCCCA+AGG + chr3_2:56012718-56012737 None:intergenic 35.0%
! TTTTCGGCAAAAGAACAAAG+AGG + chr3_2:56013124-56013143 None:intergenic 35.0%
! AAAAGGGAGACTAAGGTTTT+CGG + chr3_2:56013140-56013159 None:intergenic 35.0%
! AAAACCTTAGTCTCCCTTTT+AGG - chr3_2:56013140-56013159 Msa0412580:intron 35.0%
CACAAATAGAATCGGAAGAA+TGG + chr3_2:56013182-56013201 None:intergenic 35.0%
! GACTATTTTGCGTTTTACCA+TGG - chr3_2:56013473-56013492 Msa0412580:intron 35.0%
! GCAATTTCTGCAAATTTTGG+TGG - chr3_2:56013505-56013524 Msa0412580:intron 35.0%
!! TTTCTGCAAATTTTGGTGGT+TGG - chr3_2:56013509-56013528 Msa0412580:intron 35.0%
TTGCAGATAATGCAAACAGT+TGG - chr3_2:56013672-56013691 Msa0412580:CDS 35.0%
TGCAGATAATGCAAACAGTT+GGG - chr3_2:56013673-56013692 Msa0412580:CDS 35.0%
ATTCTACAAGACTCTGACTT+TGG + chr3_2:56014121-56014140 None:intergenic 35.0%
TCCACTTACAGAATATCTAG+GGG + chr3_2:56014386-56014405 None:intergenic 35.0%
! GTAAGTGGATTTATTGTTCC+TGG - chr3_2:56014397-56014416 Msa0412580:intron 35.0%
TATCCCCTGAGAAGATATAT+AGG + chr3_2:56014513-56014532 None:intergenic 35.0%
TTAATGGTCAATTATCTCGG+AGG - chr3_2:56014649-56014668 Msa0412580:intron 35.0%
TCTCTTAATGGTGAAGAATG+AGG - chr3_2:56014691-56014710 Msa0412580:intron 35.0%
TTAATGGTGAAGAATGAGGA+TGG - chr3_2:56014695-56014714 Msa0412580:intron 35.0%
AATACTTCCATGACATTGCT+TGG - chr3_2:56014720-56014739 Msa0412580:intron 35.0%
ATACTTCCATGACATTGCTT+GGG - chr3_2:56014721-56014740 Msa0412580:intron 35.0%
!! GATGTTTTCAAGGTTTCAGT+TGG - chr3_2:56015045-56015064 Msa0412580:intron 35.0%
TGTGTTGTGTGACAAAGTAT+CGG + chr3_2:56015145-56015164 None:intergenic 35.0%
! GAATTTTATGCCGGACAAAA+TGG - chr3_2:56015248-56015267 Msa0412580:CDS 35.0%
! GTTCATTTTCCCATATTTGG+TGG - chr3_2:56015381-56015400 Msa0412580:CDS 35.0%
GAAGAAGAAGAAGAAGGTGA+TGG + chr3_2:56010296-56010315 None:intergenic 40.0%
AGTGGTGAAGAAGAAGAAGA+AGG + chr3_2:56010302-56010321 None:intergenic 40.0%
! TGAATGGTTGAGGTTTGTTC+TGG + chr3_2:56010333-56010352 None:intergenic 40.0%
GATGTTAAGTCTGAGAAGCA+TGG - chr3_2:56010413-56010432 Msa0412580:three_prime_UTR 40.0%
TCATACTTACTTGATGCCTC+TGG + chr3_2:56010440-56010459 None:intergenic 40.0%
!! AGAGGCATCAAGTAAGTATG+AGG - chr3_2:56010439-56010458 Msa0412580:three_prime_UTR 40.0%
!! TTTGGATGGTGTTGATGTTG+AGG - chr3_2:56010493-56010512 Msa0412580:three_prime_UTR 40.0%
TTAGGAAAAACTTCCCACCA+AGG + chr3_2:56010539-56010558 None:intergenic 40.0%
! GGGAAGTTTTTCCTAAGAGA+TGG - chr3_2:56010543-56010562 Msa0412580:three_prime_UTR 40.0%
CACATATCAGTGTTAGAGTC+CGG + chr3_2:56010813-56010832 None:intergenic 40.0%
! CAGGTAGCTAACACTTTTGA+TGG + chr3_2:56010856-56010875 None:intergenic 40.0%
!! CATCAAAAGTGTTAGCTACC+TGG - chr3_2:56010854-56010873 Msa0412580:intron 40.0%
TCTACCGGAATAAACACTCA+TGG - chr3_2:56011103-56011122 Msa0412580:intron 40.0%
ACCGCAATTCATTGGAGTAT+TGG + chr3_2:56011638-56011657 None:intergenic 40.0%
TGTACTAAACCTACAGTGGT+GGG + chr3_2:56011817-56011836 None:intergenic 40.0%
AGACTGTACTAAACCTACAG+TGG + chr3_2:56011821-56011840 None:intergenic 40.0%
! AGATACTTGTTGCAGATTGC+TGG - chr3_2:56011952-56011971 Msa0412580:intron 40.0%
GAGAAGTAGATCATTAGCTC+TGG - chr3_2:56012320-56012339 Msa0412580:intron 40.0%
!! TCATTAGCTCTGGTATACAG+TGG - chr3_2:56012330-56012349 Msa0412580:intron 40.0%
GTATACAGTGGTATGTACCT+TGG - chr3_2:56012342-56012361 Msa0412580:intron 40.0%
GTGAATCAGGAAAGGTGAAA+AGG + chr3_2:56012385-56012404 None:intergenic 40.0%
CCAAAGGAGTAAAACACTGA+TGG + chr3_2:56012420-56012439 None:intergenic 40.0%
! CCATCAGTGTTTTACTCCTT+TGG - chr3_2:56012417-56012436 Msa0412580:intron 40.0%
AACTGTTCCTAGAGAACCAA+AGG + chr3_2:56012436-56012455 None:intergenic 40.0%
! TTGGTTCTCTAGGAACAGTT+TGG - chr3_2:56012436-56012455 Msa0412580:intron 40.0%
!!! TGTGTTTTTTTGGGACCTGT+AGG - chr3_2:56012597-56012616 Msa0412580:intron 40.0%
! CACTTGATGATCCTGAAATG+CGG - chr3_2:56012632-56012651 Msa0412580:intron 40.0%
! TTTTTCCAAGGAACCTGTGA+AGG - chr3_2:56012687-56012706 Msa0412580:intron 40.0%
TATTTCCTTCACAGGTTCCT+TGG + chr3_2:56012695-56012714 None:intergenic 40.0%
AACCTGTGAAGGAAATACCT+TGG - chr3_2:56012698-56012717 Msa0412580:intron 40.0%
ACCTGTGAAGGAAATACCTT+GGG - chr3_2:56012699-56012718 Msa0412580:intron 40.0%
! ACTAAGTATGCTGTTTGGTG+TGG - chr3_2:56012856-56012875 Msa0412580:intron 40.0%
TCAACCTAAAAGGGAGACTA+AGG + chr3_2:56013147-56013166 None:intergenic 40.0%
! CGTTTTACCATGGCTTACTA+TGG - chr3_2:56013483-56013502 Msa0412580:intron 40.0%
GAAATTGCCATAGTAAGCCA+TGG + chr3_2:56013493-56013512 None:intergenic 40.0%
ATGCAAACAGTTGGGTTTCT+TGG - chr3_2:56013681-56013700 Msa0412580:CDS 40.0%
ATGATGAGACACACAAGAAC+TGG + chr3_2:56013856-56013875 None:intergenic 40.0%
TTGAAGTTACTGTACGCAAC+AGG - chr3_2:56013960-56013979 Msa0412580:intron 40.0%
TGAAGTTACTGTACGCAACA+GGG - chr3_2:56013961-56013980 Msa0412580:intron 40.0%
! GTTGCAGAATATGAAGCATC+TGG + chr3_2:56014168-56014187 None:intergenic 40.0%
TGAGGAACGAGAAAGTTCAA+TGG + chr3_2:56014287-56014306 None:intergenic 40.0%
ATCTAGGGGCTATATCTTGA+TGG + chr3_2:56014372-56014391 None:intergenic 40.0%
! TCAGTGCTACTGAAAATTCC+AGG + chr3_2:56014418-56014437 None:intergenic 40.0%
ACATAACTATGGCACCAAAG+TGG - chr3_2:56014847-56014866 Msa0412580:intron 40.0%
!! AGAGAATGGAAGGTGTCATA+TGG + chr3_2:56015000-56015019 None:intergenic 40.0%
! CTCATGGGATGATGTTTTCA+AGG - chr3_2:56015035-56015054 Msa0412580:intron 40.0%
GGTTTCAGTTGGGCTATATT+TGG - chr3_2:56015056-56015075 Msa0412580:intron 40.0%
TCAGTTGGGCTATATTTGGT+TGG - chr3_2:56015060-56015079 Msa0412580:intron 40.0%
CTTGAGTACTTTCTCACAGA+AGG - chr3_2:56015176-56015195 Msa0412580:CDS 40.0%
CTAATCCAATCCTTCTTCCA+AGG + chr3_2:56015331-56015350 None:intergenic 40.0%
! GAAGAAGAAGAAGGTGATGG+TGG + chr3_2:56010293-56010312 None:intergenic 45.0%
TTTGTTCTGGTACGTGACAG+TGG + chr3_2:56010320-56010339 None:intergenic 45.0%
ATGGAAACGGAGAAGGTGAA+TGG + chr3_2:56010349-56010368 None:intergenic 45.0%
AAGTGACTGAGTCTTCACCT+TGG - chr3_2:56010519-56010538 Msa0412580:three_prime_UTR 45.0%
!! CTTTTGATGGAAGGTGTGTC+TGG + chr3_2:56010843-56010862 None:intergenic 45.0%
ACTAGGCTTAAGGCCCTATT+TGG + chr3_2:56011282-56011301 None:intergenic 45.0%
TCTCTCTCACCGCAATTCAT+TGG + chr3_2:56011646-56011665 None:intergenic 45.0%
CAGTTGTACTCTGCTGACAT+TGG + chr3_2:56011790-56011809 None:intergenic 45.0%
CAATGTCAGCAGAGTACAAC+TGG - chr3_2:56011788-56011807 Msa0412580:intron 45.0%
GTACTAAACCTACAGTGGTG+GGG + chr3_2:56011816-56011835 None:intergenic 45.0%
CTGTACTAAACCTACAGTGG+TGG + chr3_2:56011818-56011837 None:intergenic 45.0%
TGAAACCACATACCTGAGTG+AGG + chr3_2:56011864-56011883 None:intergenic 45.0%
! TACTTGTTGCAGATTGCTGG+TGG - chr3_2:56011955-56011974 Msa0412580:intron 45.0%
TGCAGATTGCTGGTGGAATA+TGG - chr3_2:56011962-56011981 Msa0412580:CDS 45.0%
GCAGATTGCTGGTGGAATAT+GGG - chr3_2:56011963-56011982 Msa0412580:CDS 45.0%
TAGCATTTGGCGTCATTTGG+TGG - chr3_2:56012013-56012032 Msa0412580:CDS 45.0%
AATCCAAGTTTGGCAGCTAC+CGG + chr3_2:56012060-56012079 None:intergenic 45.0%
GCACGGGCAACTAATAGAAA+AGG + chr3_2:56012084-56012103 None:intergenic 45.0%
ATTAGTTGCCCGTGCATTCA+TGG - chr3_2:56012089-56012108 Msa0412580:intron 45.0%
TTAGTTGCCCGTGCATTCAT+GGG - chr3_2:56012090-56012109 Msa0412580:intron 45.0%
ACCAATTCCCATGAATGCAC+GGG + chr3_2:56012100-56012119 None:intergenic 45.0%
CACCAATTCCCATGAATGCA+CGG + chr3_2:56012101-56012120 None:intergenic 45.0%
TGCATTCATGGGAATTGGTG+AGG - chr3_2:56012101-56012120 Msa0412580:intron 45.0%
!! TTACTAGGGTGTTGCTATGC+CGG - chr3_2:56012257-56012276 Msa0412580:CDS 45.0%
! TCTGTCAAAATGGGTTCCTG+TGG - chr3_2:56012293-56012312 Msa0412580:intron 45.0%
CAGTGGTATGTACCTTGGAT+CGG - chr3_2:56012347-56012366 Msa0412580:intron 45.0%
CCATACTGGTGAATCAGGAA+AGG + chr3_2:56012393-56012412 None:intergenic 45.0%
CCTTTCCTGATTCACCAGTA+TGG - chr3_2:56012390-56012409 Msa0412580:intron 45.0%
TCCTGATTCACCAGTATGGA+TGG - chr3_2:56012394-56012413 Msa0412580:intron 45.0%
CGCATTTCAGGATCATCAAG+TGG + chr3_2:56012634-56012653 None:intergenic 45.0%
! TTTTCTTCTGGCCGCATTTC+AGG + chr3_2:56012646-56012665 None:intergenic 45.0%
CCTGTGAAGGAAATACCTTG+GGG - chr3_2:56012700-56012719 Msa0412580:intron 45.0%
GCAAAAGTGGGACACTATCA+GGG + chr3_2:56012755-56012774 None:intergenic 45.0%
GAATGAAAGTTCCCCAGTTG+TGG + chr3_2:56012777-56012796 None:intergenic 45.0%
!! TGTTTGGTGTGGACGAAGTT+AGG - chr3_2:56012867-56012886 Msa0412580:intron 45.0%
CCTTGTAACAGATACACCTC+GGG + chr3_2:56013554-56013573 None:intergenic 45.0%
CCCTTGTAACAGATACACCT+CGG + chr3_2:56013555-56013574 None:intergenic 45.0%
CCGAGGTGTATCTGTTACAA+GGG - chr3_2:56013552-56013571 Msa0412580:intron 45.0%
ATCTGTTACAAGGGTTCGCA+AGG - chr3_2:56013561-56013580 Msa0412580:intron 45.0%
! GTTGTGTATGACTTGCAGTC+AGG - chr3_2:56013758-56013777 Msa0412580:intron 45.0%
GCCCCTAGATATTCTGTAAG+TGG - chr3_2:56014382-56014401 Msa0412580:intron 45.0%
TCTTCTCAGGGGATATTGCT+CGG - chr3_2:56014518-56014537 Msa0412580:intron 45.0%
ACAGGTTACATTCTGCAGCA+TGG - chr3_2:56014590-56014609 Msa0412580:intron 45.0%
CACCCATCAACACACATCAA+CGG + chr3_2:56014776-56014795 None:intergenic 45.0%
! TTGATGTGTGTTGATGGGTG+TGG - chr3_2:56014776-56014795 Msa0412580:intron 45.0%
! TGATGTGTGTTGATGGGTGT+GGG - chr3_2:56014777-56014796 Msa0412580:intron 45.0%
GCACCAATGGCACATAACTA+TGG - chr3_2:56014836-56014855 Msa0412580:intron 45.0%
GTGCCATAGTTATGTGCCAT+TGG + chr3_2:56014842-56014861 None:intergenic 45.0%
! TGAAAGATGCACTGCTGCTT+TGG + chr3_2:56014942-56014961 None:intergenic 45.0%
GCTATATTTGGTTGGAACCG+TGG - chr3_2:56015068-56015087 Msa0412580:intron 45.0%
! TCTTTTCACCGGTCGAGAAA+AGG + chr3_2:56015101-56015120 None:intergenic 45.0%
CCAACAAGGACTCGTGTAAT+CGG + chr3_2:56015308-56015327 None:intergenic 45.0%
ACGGAGAAGGTGAATGGTTG+AGG + chr3_2:56010343-56010362 None:intergenic 50.0%
AGGTGCAATGGAAACGGAGA+AGG + chr3_2:56010356-56010375 None:intergenic 50.0%
CACAGCAGGTGCAATGGAAA+CGG + chr3_2:56010362-56010381 None:intergenic 50.0%
TGACTGAGTCTTCACCTTGG+TGG - chr3_2:56010522-56010541 Msa0412580:three_prime_UTR 50.0%
GACTGAGTCTTCACCTTGGT+GGG - chr3_2:56010523-56010542 Msa0412580:three_prime_UTR 50.0%
TACATGTCTCAGCGTCATGC+CGG - chr3_2:56010791-56010810 Msa0412580:intron 50.0%
TAAACAGCTTCTCCTGGACC+AGG + chr3_2:56011001-56011020 None:intergenic 50.0%
TACCTCCTCACTCAGGTATG+TGG - chr3_2:56011856-56011875 Msa0412580:intron 50.0%
AACCACATACCTGAGTGAGG+AGG + chr3_2:56011861-56011880 None:intergenic 50.0%
! TGGAATATGGGCTGACACAG+TGG - chr3_2:56011975-56011994 Msa0412580:CDS 50.0%
! GGAATATGGGCTGACACAGT+GGG - chr3_2:56011976-56011995 Msa0412580:CDS 50.0%
CGGAGTTAGGATTGTGGCAA+CGG + chr3_2:56012040-56012059 None:intergenic 50.0%
CGTTGCCACAATCCTAACTC+CGG - chr3_2:56012038-56012057 Msa0412580:CDS 50.0%
AGCTACCGGAGTTAGGATTG+TGG + chr3_2:56012046-56012065 None:intergenic 50.0%
GGACAATATCGGGTGCAACA+AGG + chr3_2:56012146-56012165 None:intergenic 50.0%
! GTCAAAATGGGTTCCTGTGG+CGG - chr3_2:56012296-56012315 Msa0412580:intron 50.0%
ATGTACCTTGGATCGGTCAC+TGG - chr3_2:56012354-56012373 Msa0412580:intron 50.0%
GCCATCCATACTGGTGAATC+AGG + chr3_2:56012398-56012417 None:intergenic 50.0%
ACACTGATGGCCATCCATAC+TGG + chr3_2:56012407-56012426 None:intergenic 50.0%
! CCCCAAGGTATTTCCTTCAC+AGG + chr3_2:56012703-56012722 None:intergenic 50.0%
! TTTTGTCGAAACCACCGGTC+TGG - chr3_2:56012728-56012747 Msa0412580:intron 50.0%
TTTGTCGAAACCACCGGTCT+GGG - chr3_2:56012729-56012748 Msa0412580:intron 50.0%
GGCAAAAGTGGGACACTATC+AGG + chr3_2:56012756-56012775 None:intergenic 50.0%
!! TGTCCCACTTTTGCCACAAC+TGG - chr3_2:56012761-56012780 Msa0412580:intron 50.0%
!! GTCCCACTTTTGCCACAACT+GGG - chr3_2:56012762-56012781 Msa0412580:intron 50.0%
!! TCCCACTTTTGCCACAACTG+GGG - chr3_2:56012763-56012782 Msa0412580:intron 50.0%
TCCCCAGTTGTGGCAAAAGT+GGG + chr3_2:56012767-56012786 None:intergenic 50.0%
TTCCCCAGTTGTGGCAAAAG+TGG + chr3_2:56012768-56012787 None:intergenic 50.0%
CCCGAGGTGTATCTGTTACA+AGG - chr3_2:56013551-56013570 Msa0412580:intron 50.0%
!! GAGCCACATTGATTCTCCTG+TGG - chr3_2:56013728-56013747 Msa0412580:CDS 50.0%
CCACCACAGGAGAATCAATG+TGG + chr3_2:56013734-56013753 None:intergenic 50.0%
!! CCACATTGATTCTCCTGTGG+TGG - chr3_2:56013731-56013750 Msa0412580:CDS 50.0%
ATACACAACACAGCCACCAC+AGG + chr3_2:56013747-56013766 None:intergenic 50.0%
AATGCGTCAGTTCCCTGTTC+AGG + chr3_2:56014325-56014344 None:intergenic 50.0%
CTCGGTCTATCCAATACTGC+TGG - chr3_2:56014536-56014555 Msa0412580:intron 50.0%
AGCTAGCACTCCAGCAGTAT+TGG + chr3_2:56014549-56014568 None:intergenic 50.0%
! AATACTGCTGGAGTGCTAGC+TGG - chr3_2:56014548-56014567 Msa0412580:intron 50.0%
AACCTGTTGCTGCTGTTCCA+AGG + chr3_2:56014577-56014596 None:intergenic 50.0%
ATGGCACCCAAGCAATGTCA+TGG + chr3_2:56014730-56014749 None:intergenic 50.0%
! TGACATTGCTTGGGTGCCAT+TGG - chr3_2:56014730-56014749 Msa0412580:intron 50.0%
GATTGCACCAATGGCACCAA+TGG + chr3_2:56014749-56014768 None:intergenic 50.0%
ATCAACACACATCAACGGCC+AGG + chr3_2:56014771-56014790 None:intergenic 50.0%
TGGCCGTTGATGTGTGTTGA+TGG - chr3_2:56014770-56014789 Msa0412580:intron 50.0%
! GGCCGTTGATGTGTGTTGAT+GGG - chr3_2:56014771-56014790 Msa0412580:intron 50.0%
! GATGTGTGTTGATGGGTGTG+GGG - chr3_2:56014778-56014797 Msa0412580:intron 50.0%
GTGTGTGATGTGTGTGTGTG+TGG - chr3_2:56014805-56014824 Msa0412580:intron 50.0%
TGTGATGTGTGTGTGTGTGG+TGG - chr3_2:56014808-56014827 Msa0412580:intron 50.0%
CTCATTCCTGGGTTCCACTT+TGG + chr3_2:56014864-56014883 None:intergenic 50.0%
ATTTGGTTGGAACCGTGGTG+TGG - chr3_2:56015073-56015092 Msa0412580:intron 50.0%
CGAGAAAAGGTTCCACACCA+CGG + chr3_2:56015088-56015107 None:intergenic 50.0%
! GTGTGGAACCTTTTCTCGAC+CGG - chr3_2:56015090-56015109 Msa0412580:intron 50.0%
CCGATTACACGAGTCCTTGT+TGG - chr3_2:56015305-56015324 Msa0412580:CDS 50.0%
!! TCCTTGTTGGCCTTGGAAGA+AGG - chr3_2:56015318-56015337 Msa0412580:CDS 50.0%
TCCTTCTTCCAAGGCCAACA+AGG + chr3_2:56015322-56015341 None:intergenic 50.0%
!! GTTGGCCTTGGAAGAAGGAT+TGG - chr3_2:56015323-56015342 Msa0412580:CDS 50.0%
CATTGCACCTGCTGTGTCAC+CGG - chr3_2:56010366-56010385 Msa0412580:three_prime_UTR 55.0%
TGTGTCACCGGAGAGGAAGA+GGG - chr3_2:56010378-56010397 Msa0412580:three_prime_UTR 55.0%
ACACCTTCCCTCTTCCTCTC+CGG + chr3_2:56010388-56010407 None:intergenic 55.0%
! GAGAGGAAGAGGGAAGGTGT+GGG - chr3_2:56010388-56010407 Msa0412580:three_prime_UTR 55.0%
GCGGTGAGAGAGAGAACAGA+TGG - chr3_2:56011653-56011672 Msa0412580:intron 55.0%
AACTGGAACCCCACCACTGT+AGG - chr3_2:56011805-56011824 Msa0412580:intron 55.0%
TTGGGGATACCTCCTCACTC+AGG - chr3_2:56011849-56011868 Msa0412580:intron 55.0%
CTACGGATGCATCAGAGCCA+TGG + chr3_2:56011934-56011953 None:intergenic 55.0%
! ATATGGGCTGACACAGTGGG+AGG - chr3_2:56011979-56011998 Msa0412580:CDS 55.0%
GTTTGGCAGCTACCGGAGTT+AGG + chr3_2:56012053-56012072 None:intergenic 55.0%
ACTCCGGTAGCTGCCAAACT+TGG - chr3_2:56012054-56012073 Msa0412580:intron 55.0%
GCCCGTGCATTCATGGGAAT+TGG - chr3_2:56012096-56012115 Msa0412580:intron 55.0%
GATCTACTTCTCTCCGCCAC+AGG + chr3_2:56012312-56012331 None:intergenic 55.0%
CCAATCCAGTGACCGATCCA+AGG + chr3_2:56012362-56012381 None:intergenic 55.0%
CCTTGGATCGGTCACTGGAT+TGG - chr3_2:56012359-56012378 Msa0412580:intron 55.0%
GTGGCGAACTATGTGCCTAC+AGG + chr3_2:56012615-56012634 None:intergenic 55.0%
GCAGACACTCTTGTAACCCG+AGG - chr3_2:56013535-56013554 Msa0412580:intron 55.0%
ACTGACGCATTCTCGCAGTC+TGG - chr3_2:56014334-56014353 Msa0412580:intron 55.0%
GTCCTTGGAACAGCAGCAAC+AGG - chr3_2:56014572-56014591 Msa0412580:intron 55.0%
!! TTGGGTGCCATTGGTGCCAT+TGG - chr3_2:56014739-56014758 Msa0412580:intron 55.0%
!! TGGTGCCATTGGTGCAATCC+TGG - chr3_2:56014750-56014769 Msa0412580:intron 55.0%
AACGGCCAGGATTGCACCAA+TGG + chr3_2:56014758-56014777 None:intergenic 55.0%
! GTGTGTGTGTGTGGTGGAGA+TGG - chr3_2:56014814-56014833 Msa0412580:intron 55.0%
! TGTGGTGGAGATGGCACCAA+TGG - chr3_2:56014823-56014842 Msa0412580:intron 55.0%
ATGGCACCAAAGTGGAACCC+AGG - chr3_2:56014855-56014874 Msa0412580:intron 55.0%
! ACACGAGTCCTTGTTGGCCT+TGG - chr3_2:56015311-56015330 Msa0412580:CDS 55.0%
CGGTGACACAGCAGGTGCAA+TGG + chr3_2:56010368-56010387 None:intergenic 60.0%
TTCCTCTCCGGTGACACAGC+AGG + chr3_2:56010376-56010395 None:intergenic 60.0%
CTGTGTCACCGGAGAGGAAG+AGG - chr3_2:56010377-56010396 Msa0412580:three_prime_UTR 60.0%
TCACCGGAGAGGAAGAGGGA+AGG - chr3_2:56010382-56010401 Msa0412580:three_prime_UTR 60.0%
GGAGAGGAAGAGGGAAGGTG+TGG - chr3_2:56010387-56010406 Msa0412580:three_prime_UTR 60.0%
! GTCTGAGAAGCATGGGCCAG+AGG - chr3_2:56010421-56010440 Msa0412580:three_prime_UTR 60.0%
GACACTATCAGGGCCCAGAC+CGG + chr3_2:56012745-56012764 None:intergenic 60.0%
! GGAGTGCTAGCTGGTGTCCT+TGG - chr3_2:56014557-56014576 Msa0412580:intron 60.0%
CACCTGCTGTGTCACCGGAG+AGG - chr3_2:56010371-56010390 Msa0412580:three_prime_UTR 65.0%
ACTATCAGGGCCCAGACCGG+TGG + chr3_2:56012742-56012761 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 56010221 56015518 56010221 ID=Msa0412580;Name=Msa0412580
chr3_2 mRNA 56010221 56015518 56010221 ID=Msa0412580-mRNA-1;Parent=Msa0412580;Name=Msa0412580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=36|1|1|1|1|1|10|387|512
chr3_2 exon 56010221 56010705 56010221 ID=Msa0412580-mRNA-1:exon:11421;Parent=Msa0412580-mRNA-1
chr3_2 exon 56011128 56011212 56011128 ID=Msa0412580-mRNA-1:exon:11420;Parent=Msa0412580-mRNA-1
chr3_2 exon 56011343 56011408 56011343 ID=Msa0412580-mRNA-1:exon:11419;Parent=Msa0412580-mRNA-1
chr3_2 exon 56011960 56012061 56011960 ID=Msa0412580-mRNA-1:exon:11418;Parent=Msa0412580-mRNA-1
chr3_2 exon 56012157 56012294 56012157 ID=Msa0412580-mRNA-1:exon:11417;Parent=Msa0412580-mRNA-1
chr3_2 exon 56012911 56013120 56012911 ID=Msa0412580-mRNA-1:exon:11416;Parent=Msa0412580-mRNA-1
chr3_2 exon 56013260 56013475 56013260 ID=Msa0412580-mRNA-1:exon:11415;Parent=Msa0412580-mRNA-1
chr3_2 exon 56013617 56013772 56013617 ID=Msa0412580-mRNA-1:exon:11414;Parent=Msa0412580-mRNA-1
chr3_2 exon 56013869 56013976 56013869 ID=Msa0412580-mRNA-1:exon:11413;Parent=Msa0412580-mRNA-1
chr3_2 exon 56015123 56015518 56015123 ID=Msa0412580-mRNA-1:exon:11412;Parent=Msa0412580-mRNA-1
chr3_2 five_prime_UTR 56015483 56015518 56015483 ID=Msa0412580-mRNA-1:five_prime_utr;Parent=Msa0412580-mRNA-1
chr3_2 CDS 56015123 56015482 56015123 ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2 CDS 56013869 56013976 56013869 ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2 CDS 56013617 56013772 56013617 ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2 CDS 56013260 56013475 56013260 ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2 CDS 56012911 56013120 56012911 ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2 CDS 56012157 56012294 56012157 ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2 CDS 56011960 56012061 56011960 ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2 CDS 56011343 56011408 56011343 ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2 CDS 56011128 56011212 56011128 ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2 CDS 56010608 56010705 56010608 ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2 three_prime_UTR 56010221 56010607 56010221 ID=Msa0412580-mRNA-1:three_prime_utr;Parent=Msa0412580-mRNA-1
Gene Sequence

>Msa0412580

ATGAGTAGCAGAGCTCTACTCTTCTCTTTCTCTCCACCATCACCTTCTTCTTCTTCTTCACCACTGTCACGTACCAGAACAAACCTCAACCATTCACCTTCTCCGTTTCCATTGCACCTGCTGTGTCACCGGAGAGGAAGAGGGAAGGTGTGGGCAGATGTTAAGTCTGAGAAGCATGGGCCAGAGGCATCAAGTAAGTATGAGGATCTTGCAGTTCATAAGAAAGTAGTAAGTGGTTTGGATGGTGTTGATGTTGAGGAAGAAGTGACTGAGTCTTCACCTTGGTGGGAAGTTTTTCCTAAGAGATGGGTTATTGTTATTCTATGTTTCTCTGCTTTTCTTCTATGTAATATGGATAGAGTAAATATGAGCATTGCTATACTTCCAATGTCAGCAGAGTACAACTGGAACCCCACCACTGTAGGTTTAGTACAGTCTTCTTTCTTTTGGGGATACCTCCTCACTCAGATTGCTGGTGGAATATGGGCTGACACAGTGGGAGGAAAGCAAGTTTTAGCATTTGGCGTCATTTGGTGGTCCGTTGCCACAATCCTAACTCCGGTAGCTGCCAAACTTGGATTGCCTTTTCTATTAGTTGCCCGTGCATTCATGGGAATTGGTGAGGGTGTTGCTATGCCGGCCATGAATAATATTCTGTCAAAATGGGTTCCTGTGGCGGAGAGAAGTAGATCATTAGCTCTGGTATACAGTGGTATGTACCTTGGATCGGTCACTGGATTGGCCTTTTCACCTTTCCTGATTCACCAGTATGGATGGCCATCAGTGTTTTACTCCTTTGGTTCTCTAGGAACAGTTTGGTTTTGTATATGGCTTAGTAAGGCACATAGTTCGCCACTTGATGATCCTGAAATGCGGCCAGAAGAAAAGAAGTTGATTGCTACAAATGGTTTTTCCAAGGAACCTGTGAAGGAAATACCTTGGGGATTAATTTTGTCGAAACCACCGGTCTGGGCCCTGATAGTGTCCCACTTTTGCCACAACTGGGGAACTTTCATTCTTCTTACATGGATGCCAACATACTATAATCAAGTGTTGAAGTTCAATCTTACAGAATCTGGACTATTTTGCGTTTTACCATGGCTTACTATGGCAATTTCTGCAAATTTTGGTGGTTGGATTGCAGACACTCTTGTAACCCGAGGTGTATCTGTTACAAGGGTTCGCAAGATAATGCAAACAGTTGGGTTTCTTGGCCCTGCTTTCTTCTTAACTCAACTGAGCCACATTGATTCTCCTGTGGTGGCTGTGTTGTGTATGACTTGCAGTCAGGGAACTGACGCATTCTCGCAGTCTGGATTATATTCAAACCATCAAGATATAGCCCCTAGATATTCTGGGATATTGCTCGGTCTATCCAATACTGCTGGAGTGCTAGCTGGTGTCCTTGGAACAGCAGCAACAGGTTACATTCTGCAGCATGGCTCATGGGATGATGTTTTCAAGGTTTCAGTTGGGCTATATTTGGTTGGAACCGTGGTGTGGAACCTTTTCTCGACCGGTGAAAAGATCATAGACTAA

Protein sequence

>Msa0412580

MSSRALLFSFSPPSPSSSSSPLSRTRTNLNHSPSPFPLHLLCHRRGRGKVWADVKSEKHGPEASSKYEDLAVHKKVVSGLDGVDVEEEVTESSPWWEVFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWADTVGGKQVLAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTVWFCIWLSKAHSSPLDDPEMRPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSVTRVRKIMQTVGFLGPAFFLTQLSHIDSPVVAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYSGILLGLSNTAGVLAGVLGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIID*