AlfalfaGEDB | Msa0412580

M. sativa cultivar zhongmu-4 / Msa0412580

KEGG: K08193
GO: GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009314 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055035 GO:0055085
PFAM: PF07690.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412580	XP_013460180.1	98.062	516	6	1	1	512	1	516	0.0	1023

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412580	sp\|O82390\|ANTR1_ARATH	76.893	515	113	2	1	512	1	512	0.0	781

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412580	G7ZYH1	98.062	516	6	1	1	512	1	516	0.0	1023

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000370	Msa0412580	-0.808168	3.536306e-50	-8.615850e-47
Msa0000610	Msa0412580	0.863979	1.690846e-64	-8.615850e-47
Msa0000800	Msa0412580	-0.838913	2.168024e-57	-8.615850e-47
Msa0001040	Msa0412580	0.803946	2.735143e-49	-8.615850e-47
Msa0001510	Msa0412580	0.853452	2.367985e-61	-8.615850e-47
Msa0001550	Msa0412580	0.810549	1.090611e-50	-8.615850e-47
Msa0002110	Msa0412580	0.926535	4.103959e-91	-8.615850e-47
Msa0002690	Msa0412580	0.894981	1.477373e-75	-8.615850e-47
Msa0002700	Msa0412580	0.887291	1.622951e-72	-8.615850e-47
Msa0003340	Msa0412580	0.864192	1.450750e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412580	MtrunA17_Chr3g0104361	98.062	516	6	1	1	512	1	516	0.0	1023
Msa0412580	MtrunA17_Chr8g0348761	75.983	458	103	1	62	512	131	588	0.0	733
Msa0412580	MtrunA17_Chr7g0247871	78.704	432	92	0	81	512	103	534	0.0	729
Msa0412580	MtrunA17_Chr7g0241591	39.909	441	262	2	74	511	66	506	1.96e-112	342
Msa0412580	MtrunA17_Chr4g0064801	38.067	507	291	11	16	508	27	524	1.91e-109	335
Msa0412580	MtrunA17_Chr5g0429461	41.045	402	230	2	116	510	189	590	1.88e-95	301
Msa0412580	MtrunA17_Chr4g0013731	37.868	441	246	7	99	512	4	443	4.21e-83	265
Msa0412580	MtrunA17_Chr2g0290941	84.091	132	21	0	344	475	1	132	1.42e-77	240

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0412580	AT2G29650.1	76.893	515	113	2	1	512	1	512	0.0	781
Msa0412580	AT4G00370.1	76.484	455	103	1	62	512	87	541	0.0	732
Msa0412580	AT2G29650.3	87.310	394	50	0	119	512	7	400	0.0	708
Msa0412580	AT2G29650.4	87.692	390	48	0	123	512	1	390	0.0	703
Msa0412580	AT2G29650.2	72.319	401	105	2	1	398	1	398	0.0	561
Msa0412580	AT2G38060.1	38.900	509	277	8	29	510	10	511	6.29e-113	344
Msa0412580	AT5G20380.1	38.831	479	277	8	43	508	33	508	2.66e-106	327
Msa0412580	AT3G46980.1	40.000	470	269	5	54	510	58	527	4.14e-106	327
Msa0412580	AT3G46980.3	40.000	470	269	5	54	510	58	527	4.60e-106	327
Msa0412580	AT5G20380.2	38.831	479	277	8	43	508	85	560	7.47e-106	328

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Find 157 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTAGTAAGTGGTTTGGA+TGG	0.562988	3_2:-56015238	Msa0412580:CDS
AACCACATACCTGAGTGAGG+AGG	0.707329	3_2:+56013859	None:intergenic
AACCTGTGAAGGAAATACCT+TGG	0.548334	3_2:-56013019	Msa0412580:CDS
AACCTGTTGCTGCTGTTCCA+AGG	0.609936	3_2:+56011143	None:intergenic
AACTGGAACCCCACCACTGT+AGG	0.618941	3_2:-56013912	Msa0412580:CDS
AACTGTTCCTAGAGAACCAA+AGG	0.579562	3_2:+56013284	None:intergenic
AAGAAGTTGATTGCTACAAA+TGG	0.439320	3_2:-56013053	Msa0412580:CDS
AAGTGACTGAGTCTTCACCT+TGG	0.704980	3_2:-56015198	Msa0412580:CDS
AAGTTCAATCTTACAGAATC+TGG	0.297006	3_2:-56012266	Msa0412580:CDS
AATACTGCTGGAGTGCTAGC+TGG	0.544126	3_2:-56011169	Msa0412580:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTCATAAGAAAGTAGTAAG+TGG	-	chr3_2:56010470-56010489	Msa0412580:three_prime_UTR	30.0%
TAAGAAAGTAGTAAGTGGTT+TGG	-	chr3_2:56010475-56010494	Msa0412580:three_prime_UTR	30.0%
ATAACAATAACCCATCTCTT+AGG	+	chr3_2:56010557-56010576	None:intergenic	30.0%
AACTTAACGAGTTAGTTAGT+TGG	+	chr3_2:56010929-56010948	None:intergenic	30.0%
ACTTATTTGAGCTTATCTAC+CGG	-	chr3_2:56011088-56011107	Msa0412580:intron	30.0%
ACTAATCTAAACTAGGCTTA+AGG	+	chr3_2:56011292-56011311	None:intergenic	30.0%
CTCTAATTAGAAACTTCCAT+AGG	+	chr3_2:56011321-56011340	None:intergenic	30.0%
GGCTTGTAGTTCAAAATTAA+GGG	+	chr3_2:56011913-56011932	None:intergenic	30.0%
ACTAATATCAGGGACAATAT+CGG	+	chr3_2:56012157-56012176	None:intergenic	30.0%
CGTGTCCATATATTTCATAA+AGG	+	chr3_2:56012528-56012547	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	56010221	56015518	56010221	ID=Msa0412580;Name=Msa0412580
chr3_2	mRNA	56010221	56015518	56010221	ID=Msa0412580-mRNA-1;Parent=Msa0412580;Name=Msa0412580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=36\|1\|1\|1\|1\|1\|10\|387\|512
chr3_2	exon	56010221	56010705	56010221	ID=Msa0412580-mRNA-1:exon:11421;Parent=Msa0412580-mRNA-1
chr3_2	exon	56011128	56011212	56011128	ID=Msa0412580-mRNA-1:exon:11420;Parent=Msa0412580-mRNA-1
chr3_2	exon	56011343	56011408	56011343	ID=Msa0412580-mRNA-1:exon:11419;Parent=Msa0412580-mRNA-1
chr3_2	exon	56011960	56012061	56011960	ID=Msa0412580-mRNA-1:exon:11418;Parent=Msa0412580-mRNA-1
chr3_2	exon	56012157	56012294	56012157	ID=Msa0412580-mRNA-1:exon:11417;Parent=Msa0412580-mRNA-1
chr3_2	exon	56012911	56013120	56012911	ID=Msa0412580-mRNA-1:exon:11416;Parent=Msa0412580-mRNA-1
chr3_2	exon	56013260	56013475	56013260	ID=Msa0412580-mRNA-1:exon:11415;Parent=Msa0412580-mRNA-1
chr3_2	exon	56013617	56013772	56013617	ID=Msa0412580-mRNA-1:exon:11414;Parent=Msa0412580-mRNA-1
chr3_2	exon	56013869	56013976	56013869	ID=Msa0412580-mRNA-1:exon:11413;Parent=Msa0412580-mRNA-1
chr3_2	exon	56015123	56015518	56015123	ID=Msa0412580-mRNA-1:exon:11412;Parent=Msa0412580-mRNA-1
chr3_2	five_prime_UTR	56015483	56015518	56015483	ID=Msa0412580-mRNA-1:five_prime_utr;Parent=Msa0412580-mRNA-1
chr3_2	CDS	56015123	56015482	56015123	ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2	CDS	56013869	56013976	56013869	ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2	CDS	56013617	56013772	56013617	ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2	CDS	56013260	56013475	56013260	ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2	CDS	56012911	56013120	56012911	ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2	CDS	56012157	56012294	56012157	ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2	CDS	56011960	56012061	56011960	ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2	CDS	56011343	56011408	56011343	ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2	CDS	56011128	56011212	56011128	ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2	CDS	56010608	56010705	56010608	ID=Msa0412580-mRNA-1:cds;Parent=Msa0412580-mRNA-1
chr3_2	three_prime_UTR	56010221	56010607	56010221	ID=Msa0412580-mRNA-1:three_prime_utr;Parent=Msa0412580-mRNA-1

Gene Sequence

>Msa0412580

ATGAGTAGCAGAGCTCTACTCTTCTCTTTCTCTCCACCATCACCTTCTTCTTCTTCTTCACCACTGTCACGTACCAGAACAAACCTCAACCATTCACCTTCTCCGTTTCCATTGCACCTGCTGTGTCACCGGAGAGGAAGAGGGAAGGTGTGGGCAGATGTTAAGTCTGAGAAGCATGGGCCAGAGGCATCAAGTAAGTATGAGGATCTTGCAGTTCATAAGAAAGTAGTAAGTGGTTTGGATGGTGTTGATGTTGAGGAAGAAGTGACTGAGTCTTCACCTTGGTGGGAAGTTTTTCCTAAGAGATGGGTTATTGTTATTCTATGTTTCTCTGCTTTTCTTCTATGTAATATGGATAGAGTAAATATGAGCATTGCTATACTTCCAATGTCAGCAGAGTACAACTGGAACCCCACCACTGTAGGTTTAGTACAGTCTTCTTTCTTTTGGGGATACCTCCTCACTCAGATTGCTGGTGGAATATGGGCTGACACAGTGGGAGGAAAGCAAGTTTTAGCATTTGGCGTCATTTGGTGGTCCGTTGCCACAATCCTAACTCCGGTAGCTGCCAAACTTGGATTGCCTTTTCTATTAGTTGCCCGTGCATTCATGGGAATTGGTGAGGGTGTTGCTATGCCGGCCATGAATAATATTCTGTCAAAATGGGTTCCTGTGGCGGAGAGAAGTAGATCATTAGCTCTGGTATACAGTGGTATGTACCTTGGATCGGTCACTGGATTGGCCTTTTCACCTTTCCTGATTCACCAGTATGGATGGCCATCAGTGTTTTACTCCTTTGGTTCTCTAGGAACAGTTTGGTTTTGTATATGGCTTAGTAAGGCACATAGTTCGCCACTTGATGATCCTGAAATGCGGCCAGAAGAAAAGAAGTTGATTGCTACAAATGGTTTTTCCAAGGAACCTGTGAAGGAAATACCTTGGGGATTAATTTTGTCGAAACCACCGGTCTGGGCCCTGATAGTGTCCCACTTTTGCCACAACTGGGGAACTTTCATTCTTCTTACATGGATGCCAACATACTATAATCAAGTGTTGAAGTTCAATCTTACAGAATCTGGACTATTTTGCGTTTTACCATGGCTTACTATGGCAATTTCTGCAAATTTTGGTGGTTGGATTGCAGACACTCTTGTAACCCGAGGTGTATCTGTTACAAGGGTTCGCAAGATAATGCAAACAGTTGGGTTTCTTGGCCCTGCTTTCTTCTTAACTCAACTGAGCCACATTGATTCTCCTGTGGTGGCTGTGTTGTGTATGACTTGCAGTCAGGGAACTGACGCATTCTCGCAGTCTGGATTATATTCAAACCATCAAGATATAGCCCCTAGATATTCTGGGATATTGCTCGGTCTATCCAATACTGCTGGAGTGCTAGCTGGTGTCCTTGGAACAGCAGCAACAGGTTACATTCTGCAGCATGGCTCATGGGATGATGTTTTCAAGGTTTCAGTTGGGCTATATTTGGTTGGAACCGTGGTGTGGAACCTTTTCTCGACCGGTGAAAAGATCATAGACTAA

Protein sequence

>Msa0412580

MSSRALLFSFSPPSPSSSSSPLSRTRTNLNHSPSPFPLHLLCHRRGRGKVWADVKSEKHGPEASSKYEDLAVHKKVVSGLDGVDVEEEVTESSPWWEVFPKRWVIVILCFSAFLLCNMDRVNMSIAILPMSAEYNWNPTTVGLVQSSFFWGYLLTQIAGGIWADTVGGKQVLAFGVIWWSVATILTPVAAKLGLPFLLVARAFMGIGEGVAMPAMNNILSKWVPVAERSRSLALVYSGMYLGSVTGLAFSPFLIHQYGWPSVFYSFGSLGTVWFCIWLSKAHSSPLDDPEMRPEEKKLIATNGFSKEPVKEIPWGLILSKPPVWALIVSHFCHNWGTFILLTWMPTYYNQVLKFNLTESGLFCVLPWLTMAISANFGGWIADTLVTRGVSVTRVRKIMQTVGFLGPAFFLTQLSHIDSPVVAVLCMTCSQGTDAFSQSGLYSNHQDIAPRYSGILLGLSNTAGVLAGVLGTAATGYILQHGSWDDVFKVSVGLYLVGTVVWNLFSTGEKIID*