AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0784840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0784840 MtrunA17_Chr5g0436701 100.000 289 0 0 1 289 1 289 0.0 585
Msa0784840 MtrunA17_Chr3g0113211 93.080 289 20 0 1 289 1 289 0.0 550
Msa0784840 MtrunA17_Chr8g0386961 87.063 286 35 1 4 289 3 286 0.0 513
Msa0784840 MtrunA17_Chr5g0397391 84.615 286 42 1 4 289 3 286 1.69e-179 496
Msa0784840 MtrunA17_Chr4g0006001 81.034 290 53 2 1 289 1 289 5.03e-174 482
Msa0784840 MtrunA17_Chr7g0264111 73.256 258 62 2 32 283 16 272 3.82e-136 386
Msa0784840 MtrunA17_Chr1g0199731 71.910 267 68 3 23 283 7 272 2.80e-135 384
Msa0784840 MtrunA17_Chr2g0326621 69.318 264 73 2 32 288 17 279 2.58e-134 381
Msa0784840 MtrunA17_Chr3g0145671 71.984 257 71 1 32 288 14 269 6.61e-133 377
Msa0784840 MtrunA17_Chr4g0029071 68.382 272 79 3 23 288 7 277 5.16e-131 373
Msa0784840 MtrunA17_Chr6g0478191 39.149 235 127 6 55 285 21 243 1.44e-32 120
Msa0784840 MtrunA17_Chr2g0331261 36.364 231 132 5 50 277 15 233 1.32e-31 117
Msa0784840 MtrunA17_Chr1g0188771 37.069 232 127 7 55 281 21 238 1.61e-31 117
Msa0784840 MtrunA17_Chr8g0340161 36.910 233 130 6 50 277 12 232 1.00e-30 115
Msa0784840 MtrunA17_Chr5g0399341 35.841 226 129 5 55 277 19 231 1.10e-27 107
Msa0784840 MtrunA17_Chr4g0030861 33.333 237 143 5 44 277 10 234 4.76e-27 105
Msa0784840 MtrunA17_Chr1g0212671 33.333 243 135 7 44 277 10 234 1.40e-26 104
Msa0784840 MtrunA17_Chr7g0264961 33.878 245 141 8 45 283 11 240 2.19e-26 103
Msa0784840 MtrunA17_Chr1g0146161 35.135 222 125 7 55 273 19 224 2.24e-25 101
Msa0784840 MtrunA17_Chr7g0222791 34.052 232 126 7 55 277 21 234 5.73e-24 97.8
Msa0784840 MtrunA17_Chr1g0146171 35.345 232 119 10 55 277 19 228 6.45e-24 97.4
Msa0784840 MtrunA17_Chr5g0435051 27.481 262 159 6 25 275 2 243 1.18e-21 91.7
Msa0784840 MtrunA17_Chr2g0284631 30.093 216 129 6 58 270 94 290 1.31e-19 87.0
Msa0784840 MtrunA17_Chr8g0379901 30.126 239 144 8 53 287 37 256 1.08e-18 84.0
Msa0784840 MtrunA17_Chr5g0426131 30.131 229 143 7 50 277 32 244 1.78e-18 82.8
Msa0784840 MtrunA17_Chr2g0284591 32.407 216 124 6 58 270 39 235 2.45e-18 82.8
Msa0784840 MtrunA17_Chr7g0217331 28.139 231 143 7 53 280 35 245 4.60e-17 79.3
Msa0784840 MtrunA17_Chr4g0020781 32.474 194 105 6 90 277 18 191 6.29e-17 77.8
Msa0784840 MtrunA17_Chr3g0079421 27.803 223 142 4 58 277 25 231 7.49e-17 78.6
Msa0784840 MtrunA17_Chr2g0284611 31.674 221 129 6 53 270 36 237 8.81e-17 78.6
Msa0784840 MtrunA17_Chr8g0379911 28.448 232 143 8 52 279 35 247 1.27e-16 77.8
Msa0784840 MtrunA17_Chr4g0044201 26.923 234 137 7 58 287 38 241 1.29e-16 77.8
Msa0784840 MtrunA17_Chr4g0038591 31.183 186 107 7 102 272 95 274 3.11e-16 77.8
Msa0784840 MtrunA17_Chr2g0284581 31.019 216 127 7 58 270 41 237 4.15e-16 76.6
Msa0784840 MtrunA17_Chr4g0001221 26.923 234 143 7 37 270 68 273 1.71e-15 75.1
Msa0784840 MtrunA17_Chr4g0038611 28.889 180 115 4 102 270 32 209 6.46e-15 73.2
Msa0784840 MtrunA17_Chr2g0284601 32.995 197 110 7 78 270 11 189 7.11e-15 72.4
Msa0784840 MtrunA17_Chr2g0333771 29.167 216 128 7 59 270 84 278 2.59e-14 72.0
Msa0784840 MtrunA17_Chr1g0201331 26.667 225 147 6 59 282 78 285 7.41e-13 67.8
Msa0784840 MtrunA17_Chr1g0184541 26.667 225 146 6 52 275 59 265 2.09e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0784840 AT4G00430.1 86.159 289 37 2 1 289 1 286 0.0 503
Msa0784840 AT2G45960.1 84.083 289 42 2 1 289 1 285 5.84e-179 494
Msa0784840 AT4G23400.1 85.121 289 40 2 1 289 1 286 2.19e-169 471
Msa0784840 AT3G61430.2 84.429 289 41 2 1 289 1 285 2.66e-169 470
Msa0784840 AT3G61430.1 84.429 289 41 2 1 289 1 285 2.66e-169 470
Msa0784840 AT1G01620.1 84.429 289 41 2 1 289 1 285 3.00e-168 468
Msa0784840 AT2G45960.2 83.398 259 39 2 1 259 1 255 6.19e-157 439
Msa0784840 AT2G45960.3 83.398 259 39 2 1 259 1 255 1.26e-155 436
Msa0784840 AT2G37180.1 72.243 263 66 3 32 288 14 275 2.29e-134 382
Msa0784840 AT2G37170.2 72.243 263 66 3 32 288 57 318 1.77e-133 381
Msa0784840 AT4G35100.1 72.374 257 70 1 32 288 15 270 4.07e-133 379
Msa0784840 AT4G35100.2 72.374 257 70 1 32 288 15 270 4.07e-133 379
Msa0784840 AT2G37170.1 72.243 263 66 3 32 288 14 275 4.80e-133 379
Msa0784840 AT3G53420.1 72.830 265 61 4 32 288 16 277 4.82e-133 379
Msa0784840 AT3G53420.2 72.830 265 61 4 32 288 16 277 4.82e-133 379
Msa0784840 AT2G16850.1 71.984 257 71 1 32 288 13 268 2.30e-131 374
Msa0784840 AT1G01620.2 86.916 214 27 1 76 289 1 213 4.71e-131 370
Msa0784840 AT3G54820.1 69.811 265 69 3 32 288 15 276 2.93e-130 371
Msa0784840 AT4G00430.2 82.488 217 35 2 1 217 1 214 2.26e-127 362
Msa0784840 AT5G60660.1 68.679 265 72 4 32 288 16 277 6.32e-127 363
Msa0784840 AT2G39010.1 67.300 263 79 2 32 288 15 276 2.03e-126 362
Msa0784840 AT2G39010.2 64.894 188 59 2 32 213 15 201 1.58e-81 245
Msa0784840 AT3G16240.1 37.168 226 127 5 55 277 19 232 2.05e-31 117
Msa0784840 AT5G47450.1 37.662 231 129 7 50 277 14 232 1.32e-30 115
Msa0784840 AT4G01470.1 35.593 236 137 5 45 277 11 234 3.86e-30 114
Msa0784840 AT1G73190.1 37.083 240 130 7 55 285 24 251 6.32e-30 114
Msa0784840 AT1G17810.1 35.146 239 134 7 55 284 24 250 8.82e-30 114
Msa0784840 AT4G17340.1 36.283 226 129 6 55 277 19 232 5.22e-27 106
Msa0784840 AT2G36830.1 32.389 247 136 8 44 279 10 236 1.96e-26 104
Msa0784840 AT3G26520.1 32.231 242 137 7 42 277 15 235 1.14e-25 102
Msa0784840 AT2G25810.1 35.652 230 130 7 55 281 19 233 7.08e-24 97.8
Msa0784840 AT3G47440.1 31.687 243 135 8 50 281 18 240 1.28e-22 94.4
Msa0784840 AT1G31885.1 29.150 247 154 6 26 270 22 249 6.76e-20 88.2
Msa0784840 AT4G19030.1 27.985 268 175 7 26 288 26 280 3.93e-19 85.9
Msa0784840 AT5G37820.2 29.032 217 128 7 58 269 82 277 2.39e-16 78.2
Msa0784840 AT5G37820.1 29.032 217 128 7 58 269 46 241 2.52e-16 77.8
Msa0784840 AT1G31885.2 29.082 196 129 4 77 270 8 195 5.84e-16 76.6
Msa0784840 AT4G18910.1 27.509 269 175 8 26 287 21 276 7.56e-16 76.6
Msa0784840 AT2G34390.1 26.071 280 178 9 6 277 2 260 1.83e-15 75.5
Msa0784840 AT4G10380.1 24.901 253 158 6 33 270 41 276 1.80e-12 67.0
Msa0784840 AT5G37810.1 27.189 217 132 7 58 269 46 241 1.98e-12 66.6
Msa0784840 AT1G80760.1 25.301 249 166 6 32 280 60 288 2.55e-12 66.6
Msa0784840 AT2G34390.2 26.667 225 145 7 58 277 9 218 4.11e-12 65.1

Find 94 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCCAAGTGGTTGTCTTTC+TGG 0.098743 5_2:+69579243 None:intergenic
TATTCTTGCAGTGGATCTTC+TGG 0.169058 5_2:-69577723 Msa0784840:intron
CAAGGAATTGCTTGGGCTTT+TGG 0.173907 5_2:-69579018 Msa0784840:CDS
TTAATACCAGTTCCAGTAAT+TGG 0.193062 5_2:+69577914 None:intergenic
CTAATATTATTATGATTATT+AGG 0.215526 5_2:-69577509 Msa0784840:three_prime_UTR
TTCTGGGTGGGACCATTTAT+TGG 0.238352 5_2:-69577706 Msa0784840:CDS
TTTGAAGGAAAGACAAGATT+TGG 0.252728 5_2:-69578278 Msa0784840:CDS
CGCTGTGTTCTTGGTTCACT+TGG 0.261822 5_2:-69577945 Msa0784840:CDS
GCAAGAGCTGCTCCAATAAA+TGG 0.306781 5_2:+69577694 None:intergenic
AATTGGGTTCGCTGTGTTCT+TGG 0.323972 5_2:-69577954 Msa0784840:CDS
AAACAGTGATATAAAGAAAA+AGG 0.328096 5_2:+69579094 None:intergenic
ACAAGATTTGGAGATCTAAA+AGG 0.340417 5_2:-69578266 Msa0784840:CDS
GGTGGCTCTTGATAGTCCTT+AGG 0.343217 5_2:+69579198 None:intergenic
TCCCAAGTGGTTGTCTTTCT+GGG 0.348961 5_2:+69579244 None:intergenic
CTACATGGTGATGCAGTGTT+TGG 0.355162 5_2:-69578333 Msa0784840:CDS
AGCCATCTGAACTGACTTCA+TGG 0.369669 5_2:-69579158 Msa0784840:CDS
AAAGAACAGGATGTGTCTTT+AGG 0.370646 5_2:-69579279 Msa0784840:CDS
ATTCTTGCAGTGGATCTTCT+GGG 0.373293 5_2:-69577722 Msa0784840:intron
TTGGGTGCTATTTGTGGTGC+TGG 0.377061 5_2:-69578314 Msa0784840:CDS
TCAAAAGCATAGGAAAATTT+AGG 0.380309 5_2:+69577458 None:intergenic
GATAGTCCTTAGGGTCATCT+TGG 0.381110 5_2:+69579208 None:intergenic
TACTGTACTGCTGGAATCTC+AGG 0.389203 5_2:-69578973 Msa0784840:intron
TTGTCTTTCTGGGAATTTGT+TGG 0.391781 5_2:+69579254 None:intergenic
TTGGCCACTATCCCAATTAC+TGG 0.392883 5_2:-69577926 Msa0784840:CDS
GCTCTTGTTTACTGTACTGC+TGG 0.392947 5_2:-69578982 Msa0784840:CDS
CATGAATCATGATAGTGTTA+AGG 0.397274 5_2:+69577332 None:intergenic
ATAAACCCAGCAGTGACATT+TGG 0.404529 5_2:-69578398 Msa0784840:CDS
TGTAAGACTGTGGGAATTCA+AGG 0.405446 5_2:-69579036 Msa0784840:CDS
TAAACCCAGCAGTGACATTT+GGG 0.405583 5_2:-69578397 Msa0784840:CDS
TAATACCAGTTCCAGTAATT+GGG 0.410603 5_2:+69577915 None:intergenic
CAGTGTTTGGGTGCTATTTG+TGG 0.412618 5_2:-69578320 Msa0784840:CDS
TCATGGTCTTTCTATAGAGC+TGG 0.423680 5_2:-69579141 Msa0784840:CDS
ACTATCCCAATTACTGGAAC+TGG 0.426227 5_2:-69577920 Msa0784840:CDS
GGTGCCAACTTTGTTGCTCC+TGG 0.427799 5_2:-69578242 Msa0784840:CDS
ATTTGATCACTTAGACTTGA+AGG 0.433397 5_2:+69577636 None:intergenic
AGCACCAAGACCATCACCTT+TGG 0.435976 5_2:+69578214 None:intergenic
TGGGAATTCAAGGAATTGCT+TGG 0.439167 5_2:-69579026 Msa0784840:CDS
TACATGGTGATGCAGTGTTT+GGG 0.439412 5_2:-69578332 Msa0784840:CDS
ATGAATCATGATAGTGTTAA+GGG 0.445539 5_2:+69577333 None:intergenic
TCCAGCTCGTGTGTGATGTA+CGG 0.451169 5_2:-69577419 Msa0784840:three_prime_UTR
CTTCAACAAGGACCTTGGTT+GGG 0.451717 5_2:-69577861 Msa0784840:CDS
AATAGCCCAAATGTCACTGC+TGG 0.456045 5_2:+69578392 None:intergenic
GGGAATTCAAGGAATTGCTT+GGG 0.463084 5_2:-69579025 Msa0784840:CDS
GTGGCTCTTGATAGTCCTTA+GGG 0.463360 5_2:+69579199 None:intergenic
ATTAACCCTGCTCGTAGTCT+TGG 0.478309 5_2:-69577896 Msa0784840:CDS
TGTGGTGCTGGTGTTGTGAA+AGG 0.479519 5_2:-69578302 Msa0784840:CDS
TCAAACAACGGTGCTGGTGG+TGG 0.481920 5_2:+69579180 None:intergenic
GGTCTTGGTGCTGAAATTGT+TGG 0.490732 5_2:-69578203 Msa0784840:CDS
TACGGGAACATGAGAGTCTC+TGG 0.492319 5_2:+69578127 None:intergenic
TCTTCAACAAGGACCTTGGT+TGG 0.493563 5_2:-69577862 Msa0784840:CDS
AAGAACACAGCGAACCCAAT+TGG 0.494251 5_2:+69577956 None:intergenic
ATCAATCAAGACATGTTTGT+GGG 0.494409 5_2:-69577600 Msa0784840:three_prime_UTR
CCCGTACATCACACACGAGC+TGG 0.495054 5_2:+69577418 None:intergenic
CCAGCTCGTGTGTGATGTAC+GGG 0.499990 5_2:-69577418 Msa0784840:three_prime_UTR
GATGGCTCAAACAACGGTGC+TGG 0.510215 5_2:+69579174 None:intergenic
AGTTCCAGTAATTGGGATAG+TGG 0.513529 5_2:+69577922 None:intergenic
CATGGTCTTTCTATAGAGCT+GGG 0.520612 5_2:-69579140 Msa0784840:CDS
AGTTCAGATGGCTCAAACAA+CGG 0.521397 5_2:+69579168 None:intergenic
ATTATCTTCAACAAGGACCT+TGG 0.525491 5_2:-69577866 Msa0784840:CDS
GACCATGAAGTCAGTTCAGA+TGG 0.532853 5_2:+69579156 None:intergenic
TTGCAGTGGATCTTCTGGGT+GGG 0.533501 5_2:-69577718 Msa0784840:intron
GTCTAAGTGATCAAATCAAA+CGG 0.537584 5_2:-69577629 Msa0784840:exon
GTTGCTCCTGGTTACACCAA+AGG 0.542015 5_2:-69578230 Msa0784840:CDS
TCACTTAGACTTGAAGGGAA+TGG 0.553226 5_2:+69577642 None:intergenic
TACACCAAAGGTGATGGTCT+TGG 0.554514 5_2:-69578218 Msa0784840:CDS
CATGTGTGTGTGTTGAGTAA+TGG 0.554858 5_2:-69577481 Msa0784840:three_prime_UTR
GACAAGAGCATTGTTCTACA+TGG 0.557563 5_2:-69578348 Msa0784840:CDS
TTTGATCACTTAGACTTGAA+GGG 0.559600 5_2:+69577637 None:intergenic
CCTGGTTACACCAAAGGTGA+TGG 0.563447 5_2:-69578224 Msa0784840:CDS
GATCAATCAAGACATGTTTG+TGG 0.564316 5_2:-69577601 Msa0784840:three_prime_UTR
CCATCACCTTTGGTGTAACC+AGG 0.566415 5_2:+69578224 None:intergenic
AGCATCGGTGGCTGAGAAGA+CGG 0.570780 5_2:+69578160 None:intergenic
GGCGCTACGTTTAGCATCGG+TGG 0.574723 5_2:+69578148 None:intergenic
TATTTCCAACTCAAAAGCAT+AGG 0.579075 5_2:+69577448 None:intergenic
GCAGCACCAAGACTACGAGC+AGG 0.585086 5_2:+69577890 None:intergenic
TCAAAGCCAAGATGACCCTA+AGG 0.586870 5_2:-69579214 Msa0784840:CDS
GATTCTAAGTGTAAGACTGT+GGG 0.592644 5_2:-69579045 Msa0784840:CDS
TCCCAGAAAGACAACCACTT+GGG 0.597140 5_2:-69579245 Msa0784840:CDS
ATAGCCCAAATGTCACTGCT+GGG 0.598118 5_2:+69578393 None:intergenic
CTTGCAGTGGATCTTCTGGG+TGG 0.604626 5_2:-69577719 Msa0784840:intron
GTAGAACAATGCTCTTGTCA+AGG 0.615840 5_2:+69578352 None:intergenic
CTTTGAGCTGCAATCCCAAG+TGG 0.615951 5_2:+69579231 None:intergenic
TTCCCAGAAAGACAACCACT+TGG 0.616137 5_2:-69579246 Msa0784840:CDS
GGCTCAAACAACGGTGCTGG+TGG 0.625378 5_2:+69579177 None:intergenic
TGATTCTAAGTGTAAGACTG+TGG 0.626711 5_2:-69579046 Msa0784840:CDS
GTAACCAGGAGCAACAAAGT+TGG 0.636963 5_2:+69578238 None:intergenic
ACAGCGAACCCAATTGGCAA+TGG 0.642498 5_2:+69577962 None:intergenic
TGCTGCTATTATCTTCAACA+AGG 0.649253 5_2:-69577873 Msa0784840:CDS
TCTGGCGCTACGTTTAGCAT+CGG 0.662595 5_2:+69578145 None:intergenic
CAGCACCAAGACTACGAGCA+GGG 0.662928 5_2:+69577891 None:intergenic
AGATTTGGAGATCTAAAAGG+TGG 0.683343 5_2:-69578263 Msa0784840:CDS
TTACGTGATCATCCCAACCA+AGG 0.707418 5_2:+69577849 None:intergenic
TGGCTCTGATTACGACCACG+TGG 0.762119 5_2:+69577662 None:intergenic
TCTTGCAGCACTCTACCACG+TGG 0.776974 5_2:-69577677 Msa0784840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTATTTTTCTGTTAT+AGG - chr5_2:69577818-69577837 Msa0784840:intron 10.0%
!! CTAATATTATTATGATTATT+AGG - chr5_2:69579158-69579177 Msa0784840:CDS 10.0%
!!! AATTTTTATTTTTCTGTTAT+AGG - chr5_2:69577818-69577837 Msa0784840:intron 10.0%
!! CTAATATTATTATGATTATT+AGG - chr5_2:69579158-69579177 Msa0784840:CDS 10.0%
!!! TTAGTACTTATAATTTTTGA+AGG - chr5_2:69577771-69577790 Msa0784840:intron 15.0%
!! GTCAAATGTTTATAATAATT+CGG + chr5_2:69578596-69578615 None:intergenic 15.0%
!!! TTTATTTTATGAGTAGATTT+TGG - chr5_2:69578680-69578699 Msa0784840:intron 15.0%
!!! TTAGTACTTATAATTTTTGA+AGG - chr5_2:69577771-69577790 Msa0784840:intron 15.0%
!! GTCAAATGTTTATAATAATT+CGG + chr5_2:69578596-69578615 None:intergenic 15.0%
!!! TTTATTTTATGAGTAGATTT+TGG - chr5_2:69578680-69578699 Msa0784840:intron 15.0%
!! AAACAGTGATATAAAGAAAA+AGG + chr5_2:69577576-69577595 None:intergenic 20.0%
!!! TACATATATGTTGCTATTTA+AGG + chr5_2:69577740-69577759 None:intergenic 20.0%
!!! ACTAAATTTAGTTTTTCCTA+TGG - chr5_2:69577841-69577860 Msa0784840:intron 20.0%
!! TACATAAATTTCATTCAAAC+TGG + chr5_2:69577868-69577887 None:intergenic 20.0%
!!! TCTAAGAAAGTGTAATTATA+TGG - chr5_2:69577897-69577916 Msa0784840:CDS 20.0%
!!! TATATTAGTAGTTTTTTGTG+TGG - chr5_2:69577988-69578007 Msa0784840:intron 20.0%
!! TTAATTTATTATTCTTGCAG+TGG - chr5_2:69578935-69578954 Msa0784840:intron 20.0%
!! AAACAGTGATATAAAGAAAA+AGG + chr5_2:69577576-69577595 None:intergenic 20.0%
!!! TACATATATGTTGCTATTTA+AGG + chr5_2:69577740-69577759 None:intergenic 20.0%
!!! ACTAAATTTAGTTTTTCCTA+TGG - chr5_2:69577841-69577860 Msa0784840:intron 20.0%
!! TACATAAATTTCATTCAAAC+TGG + chr5_2:69577868-69577887 None:intergenic 20.0%
!!! TCTAAGAAAGTGTAATTATA+TGG - chr5_2:69577897-69577916 Msa0784840:CDS 20.0%
!!! TATATTAGTAGTTTTTTGTG+TGG - chr5_2:69577988-69578007 Msa0784840:intron 20.0%
!! TTAATTTATTATTCTTGCAG+TGG - chr5_2:69578935-69578954 Msa0784840:intron 20.0%
! ATATCGATCTAATGTTAGTT+TGG - chr5_2:69578179-69578198 Msa0784840:CDS 25.0%
!!! TTTTTTGAAGGAAAAGGAAA+AGG + chr5_2:69579110-69579129 None:intergenic 25.0%
!!! ACTTGATTTTTTGAAGGAAA+AGG + chr5_2:69579116-69579135 None:intergenic 25.0%
!!! TACAACACTTGATTTTTTGA+AGG + chr5_2:69579122-69579141 None:intergenic 25.0%
!! TCAAAAGCATAGGAAAATTT+AGG + chr5_2:69579212-69579231 None:intergenic 25.0%
!!! CTTGAGTGTTATTTTAGATT+TGG + chr5_2:69579292-69579311 None:intergenic 25.0%
!! ATGAATCATGATAGTGTTAA+GGG + chr5_2:69579337-69579356 None:intergenic 25.0%
! ATATCGATCTAATGTTAGTT+TGG - chr5_2:69578179-69578198 Msa0784840:CDS 25.0%
!!! TTTTTTGAAGGAAAAGGAAA+AGG + chr5_2:69579110-69579129 None:intergenic 25.0%
!!! ACTTGATTTTTTGAAGGAAA+AGG + chr5_2:69579116-69579135 None:intergenic 25.0%
!!! TACAACACTTGATTTTTTGA+AGG + chr5_2:69579122-69579141 None:intergenic 25.0%
!! TCAAAAGCATAGGAAAATTT+AGG + chr5_2:69579212-69579231 None:intergenic 25.0%
!!! CTTGAGTGTTATTTTAGATT+TGG + chr5_2:69579292-69579311 None:intergenic 25.0%
!! ATGAATCATGATAGTGTTAA+GGG + chr5_2:69579337-69579356 None:intergenic 25.0%
AAAAATGGAAGCTAAAGAAC+AGG - chr5_2:69577375-69577394 Msa0784840:three_prime_UTR 30.0%
!!! TATCACTGTTTTGACTGTTA+TGG - chr5_2:69577585-69577604 Msa0784840:three_prime_UTR 30.0%
!!! ATCACTGTTTTGACTGTTAT+GGG - chr5_2:69577586-69577605 Msa0784840:three_prime_UTR 30.0%
AAGTAACAACTACCATGATA+AGG - chr5_2:69578085-69578104 Msa0784840:intron 30.0%
TTATGGATATGTCCTTATCA+TGG + chr5_2:69578100-69578119 None:intergenic 30.0%
TTTGAAGGAAAGACAAGATT+TGG - chr5_2:69578389-69578408 Msa0784840:CDS 30.0%
ACAAGATTTGGAGATCTAAA+AGG - chr5_2:69578401-69578420 Msa0784840:CDS 30.0%
TAATACCAGTTCCAGTAATT+GGG + chr5_2:69578755-69578774 None:intergenic 30.0%
TTAATACCAGTTCCAGTAAT+TGG + chr5_2:69578756-69578775 None:intergenic 30.0%
TTTGATCACTTAGACTTGAA+GGG + chr5_2:69579033-69579052 None:intergenic 30.0%
ATTTGATCACTTAGACTTGA+AGG + chr5_2:69579034-69579053 None:intergenic 30.0%
GTCTAAGTGATCAAATCAAA+CGG - chr5_2:69579038-69579057 Msa0784840:CDS 30.0%
ATCAATCAAGACATGTTTGT+GGG - chr5_2:69579067-69579086 Msa0784840:CDS 30.0%
!! ATTTTCCTATGCTTTTGAGT+TGG - chr5_2:69579214-69579233 Msa0784840:CDS 30.0%
! TATTTCCAACTCAAAAGCAT+AGG + chr5_2:69579222-69579241 None:intergenic 30.0%
!!! TGCTTTTGAGTTGGAAATAA+TGG - chr5_2:69579223-69579242 Msa0784840:CDS 30.0%
!!! GCTTTTGAGTTGGAAATAAT+GGG - chr5_2:69579224-69579243 Msa0784840:CDS 30.0%
!!! CTTTTGAGTTGGAAATAATG+GGG - chr5_2:69579225-69579244 Msa0784840:CDS 30.0%
! CATGAATCATGATAGTGTTA+AGG + chr5_2:69579338-69579357 None:intergenic 30.0%
AAAAATGGAAGCTAAAGAAC+AGG - chr5_2:69577375-69577394 Msa0784840:three_prime_UTR 30.0%
!!! TATCACTGTTTTGACTGTTA+TGG - chr5_2:69577585-69577604 Msa0784840:three_prime_UTR 30.0%
!!! ATCACTGTTTTGACTGTTAT+GGG - chr5_2:69577586-69577605 Msa0784840:three_prime_UTR 30.0%
AAGTAACAACTACCATGATA+AGG - chr5_2:69578085-69578104 Msa0784840:intron 30.0%
TTATGGATATGTCCTTATCA+TGG + chr5_2:69578100-69578119 None:intergenic 30.0%
TTTGAAGGAAAGACAAGATT+TGG - chr5_2:69578389-69578408 Msa0784840:CDS 30.0%
ACAAGATTTGGAGATCTAAA+AGG - chr5_2:69578401-69578420 Msa0784840:CDS 30.0%
TAATACCAGTTCCAGTAATT+GGG + chr5_2:69578755-69578774 None:intergenic 30.0%
TTAATACCAGTTCCAGTAAT+TGG + chr5_2:69578756-69578775 None:intergenic 30.0%
TTTGATCACTTAGACTTGAA+GGG + chr5_2:69579033-69579052 None:intergenic 30.0%
ATTTGATCACTTAGACTTGA+AGG + chr5_2:69579034-69579053 None:intergenic 30.0%
GTCTAAGTGATCAAATCAAA+CGG - chr5_2:69579038-69579057 Msa0784840:CDS 30.0%
ATCAATCAAGACATGTTTGT+GGG - chr5_2:69579067-69579086 Msa0784840:CDS 30.0%
!! ATTTTCCTATGCTTTTGAGT+TGG - chr5_2:69579214-69579233 Msa0784840:CDS 30.0%
! TATTTCCAACTCAAAAGCAT+AGG + chr5_2:69579222-69579241 None:intergenic 30.0%
!!! TGCTTTTGAGTTGGAAATAA+TGG - chr5_2:69579223-69579242 Msa0784840:CDS 30.0%
!!! GCTTTTGAGTTGGAAATAAT+GGG - chr5_2:69579224-69579243 Msa0784840:CDS 30.0%
!!! CTTTTGAGTTGGAAATAATG+GGG - chr5_2:69579225-69579244 Msa0784840:CDS 30.0%
! CATGAATCATGATAGTGTTA+AGG + chr5_2:69579338-69579357 None:intergenic 30.0%
!!! AGGTTTGTGTTTTTGGATTG+AGG + chr5_2:69577349-69577368 None:intergenic 35.0%
CAATCCAAAAACACAAACCT+AGG - chr5_2:69577349-69577368 Msa0784840:three_prime_UTR 35.0%
! TGTTCCTAGGTTTGTGTTTT+TGG + chr5_2:69577356-69577375 None:intergenic 35.0%
CACAAACCTAGGAACAAAAA+TGG - chr5_2:69577360-69577379 Msa0784840:three_prime_UTR 35.0%
!! TAGCTTCCATTTTTGTTCCT+AGG + chr5_2:69577369-69577388 None:intergenic 35.0%
AAAGAACAGGATGTGTCTTT+AGG - chr5_2:69577388-69577407 Msa0784840:three_prime_UTR 35.0%
! TTGTCTTTCTGGGAATTTGT+TGG + chr5_2:69577416-69577435 None:intergenic 35.0%
TGATTCTAAGTGTAAGACTG+TGG - chr5_2:69577621-69577640 Msa0784840:three_prime_UTR 35.0%
GATTCTAAGTGTAAGACTGT+GGG - chr5_2:69577622-69577641 Msa0784840:three_prime_UTR 35.0%
TTTCATTCAAACTGGTCCAT+AGG + chr5_2:69577860-69577879 None:intergenic 35.0%
!! AGTGACATTTGGGCTATTTT+TGG - chr5_2:69578280-69578299 Msa0784840:CDS 35.0%
AGATTTGGAGATCTAAAAGG+TGG - chr5_2:69578404-69578423 Msa0784840:CDS 35.0%
ACAGTGTAAAAGAGACTTAC+GGG + chr5_2:69578560-69578579 None:intergenic 35.0%
GACAGTGTAAAAGAGACTTA+CGG + chr5_2:69578561-69578580 None:intergenic 35.0%
TGCTGCTATTATCTTCAACA+AGG - chr5_2:69578794-69578813 Msa0784840:intron 35.0%
ATTATCTTCAACAAGGACCT+TGG - chr5_2:69578801-69578820 Msa0784840:intron 35.0%
GATCAATCAAGACATGTTTG+TGG - chr5_2:69579066-69579085 Msa0784840:CDS 35.0%
!!! AGGTTTGTGTTTTTGGATTG+AGG + chr5_2:69577349-69577368 None:intergenic 35.0%
CAATCCAAAAACACAAACCT+AGG - chr5_2:69577349-69577368 Msa0784840:three_prime_UTR 35.0%
! TGTTCCTAGGTTTGTGTTTT+TGG + chr5_2:69577356-69577375 None:intergenic 35.0%
CACAAACCTAGGAACAAAAA+TGG - chr5_2:69577360-69577379 Msa0784840:three_prime_UTR 35.0%
!! TAGCTTCCATTTTTGTTCCT+AGG + chr5_2:69577369-69577388 None:intergenic 35.0%
AAAGAACAGGATGTGTCTTT+AGG - chr5_2:69577388-69577407 Msa0784840:three_prime_UTR 35.0%
! TTGTCTTTCTGGGAATTTGT+TGG + chr5_2:69577416-69577435 None:intergenic 35.0%
TGATTCTAAGTGTAAGACTG+TGG - chr5_2:69577621-69577640 Msa0784840:three_prime_UTR 35.0%
GATTCTAAGTGTAAGACTGT+GGG - chr5_2:69577622-69577641 Msa0784840:three_prime_UTR 35.0%
TTTCATTCAAACTGGTCCAT+AGG + chr5_2:69577860-69577879 None:intergenic 35.0%
!! AGTGACATTTGGGCTATTTT+TGG - chr5_2:69578280-69578299 Msa0784840:CDS 35.0%
AGATTTGGAGATCTAAAAGG+TGG - chr5_2:69578404-69578423 Msa0784840:CDS 35.0%
ACAGTGTAAAAGAGACTTAC+GGG + chr5_2:69578560-69578579 None:intergenic 35.0%
GACAGTGTAAAAGAGACTTA+CGG + chr5_2:69578561-69578580 None:intergenic 35.0%
TGCTGCTATTATCTTCAACA+AGG - chr5_2:69578794-69578813 Msa0784840:intron 35.0%
ATTATCTTCAACAAGGACCT+TGG - chr5_2:69578801-69578820 Msa0784840:intron 35.0%
GATCAATCAAGACATGTTTG+TGG - chr5_2:69579066-69579085 Msa0784840:CDS 35.0%
AGTTCAGATGGCTCAAACAA+CGG + chr5_2:69577502-69577521 None:intergenic 40.0%
TCATGGTCTTTCTATAGAGC+TGG - chr5_2:69577526-69577545 Msa0784840:three_prime_UTR 40.0%
CATGGTCTTTCTATAGAGCT+GGG - chr5_2:69577527-69577546 Msa0784840:three_prime_UTR 40.0%
TGTAAGACTGTGGGAATTCA+AGG - chr5_2:69577631-69577650 Msa0784840:exon 40.0%
TGGGAATTCAAGGAATTGCT+TGG - chr5_2:69577641-69577660 Msa0784840:exon 40.0%
GGGAATTCAAGGAATTGCTT+GGG - chr5_2:69577642-69577661 Msa0784840:CDS 40.0%
AATTATGTACCGTGTGTTGC+AGG - chr5_2:69578239-69578258 Msa0784840:CDS 40.0%
ATTATGTACCGTGTGTTGCA+GGG - chr5_2:69578240-69578259 Msa0784840:CDS 40.0%
ATAAACCCAGCAGTGACATT+TGG - chr5_2:69578269-69578288 Msa0784840:CDS 40.0%
TAAACCCAGCAGTGACATTT+GGG - chr5_2:69578270-69578289 Msa0784840:CDS 40.0%
GTAGAACAATGCTCTTGTCA+AGG + chr5_2:69578318-69578337 None:intergenic 40.0%
!! GACAAGAGCATTGTTCTACA+TGG - chr5_2:69578319-69578338 Msa0784840:CDS 40.0%
! TACATGGTGATGCAGTGTTT+GGG - chr5_2:69578335-69578354 Msa0784840:CDS 40.0%
!! GGTGTTGTGAAAGGTTTTGA+AGG - chr5_2:69578374-69578393 Msa0784840:CDS 40.0%
!! ATTTTGGCACCATTGCCAAT+TGG - chr5_2:69578696-69578715 Msa0784840:intron 40.0%
! TTTTGGCACCATTGCCAATT+GGG - chr5_2:69578697-69578716 Msa0784840:intron 40.0%
AGTTCCAGTAATTGGGATAG+TGG + chr5_2:69578748-69578767 None:intergenic 40.0%
ACTATCCCAATTACTGGAAC+TGG - chr5_2:69578747-69578766 Msa0784840:intron 40.0%
TATTCTTGCAGTGGATCTTC+TGG - chr5_2:69578944-69578963 Msa0784840:intron 40.0%
ATTCTTGCAGTGGATCTTCT+GGG - chr5_2:69578945-69578964 Msa0784840:intron 40.0%
TCACTTAGACTTGAAGGGAA+TGG + chr5_2:69579028-69579047 None:intergenic 40.0%
CATGTGTGTGTGTTGAGTAA+TGG - chr5_2:69579186-69579205 Msa0784840:CDS 40.0%
AGTTCAGATGGCTCAAACAA+CGG + chr5_2:69577502-69577521 None:intergenic 40.0%
TCATGGTCTTTCTATAGAGC+TGG - chr5_2:69577526-69577545 Msa0784840:three_prime_UTR 40.0%
CATGGTCTTTCTATAGAGCT+GGG - chr5_2:69577527-69577546 Msa0784840:three_prime_UTR 40.0%
TGTAAGACTGTGGGAATTCA+AGG - chr5_2:69577631-69577650 Msa0784840:exon 40.0%
TGGGAATTCAAGGAATTGCT+TGG - chr5_2:69577641-69577660 Msa0784840:exon 40.0%
GGGAATTCAAGGAATTGCTT+GGG - chr5_2:69577642-69577661 Msa0784840:CDS 40.0%
AATTATGTACCGTGTGTTGC+AGG - chr5_2:69578239-69578258 Msa0784840:CDS 40.0%
ATTATGTACCGTGTGTTGCA+GGG - chr5_2:69578240-69578259 Msa0784840:CDS 40.0%
ATAAACCCAGCAGTGACATT+TGG - chr5_2:69578269-69578288 Msa0784840:CDS 40.0%
TAAACCCAGCAGTGACATTT+GGG - chr5_2:69578270-69578289 Msa0784840:CDS 40.0%
GTAGAACAATGCTCTTGTCA+AGG + chr5_2:69578318-69578337 None:intergenic 40.0%
!! GACAAGAGCATTGTTCTACA+TGG - chr5_2:69578319-69578338 Msa0784840:CDS 40.0%
! TACATGGTGATGCAGTGTTT+GGG - chr5_2:69578335-69578354 Msa0784840:CDS 40.0%
!! GGTGTTGTGAAAGGTTTTGA+AGG - chr5_2:69578374-69578393 Msa0784840:CDS 40.0%
!! ATTTTGGCACCATTGCCAAT+TGG - chr5_2:69578696-69578715 Msa0784840:intron 40.0%
! TTTTGGCACCATTGCCAATT+GGG - chr5_2:69578697-69578716 Msa0784840:intron 40.0%
AGTTCCAGTAATTGGGATAG+TGG + chr5_2:69578748-69578767 None:intergenic 40.0%
ACTATCCCAATTACTGGAAC+TGG - chr5_2:69578747-69578766 Msa0784840:intron 40.0%
TATTCTTGCAGTGGATCTTC+TGG - chr5_2:69578944-69578963 Msa0784840:intron 40.0%
ATTCTTGCAGTGGATCTTCT+GGG - chr5_2:69578945-69578964 Msa0784840:intron 40.0%
TCACTTAGACTTGAAGGGAA+TGG + chr5_2:69579028-69579047 None:intergenic 40.0%
CATGTGTGTGTGTTGAGTAA+TGG - chr5_2:69579186-69579205 Msa0784840:CDS 40.0%
TTCCCAGAAAGACAACCACT+TGG - chr5_2:69577421-69577440 Msa0784840:three_prime_UTR 45.0%
TCCCAGAAAGACAACCACTT+GGG - chr5_2:69577422-69577441 Msa0784840:three_prime_UTR 45.0%
TCCCAAGTGGTTGTCTTTCT+GGG + chr5_2:69577426-69577445 None:intergenic 45.0%
ATCCCAAGTGGTTGTCTTTC+TGG + chr5_2:69577427-69577446 None:intergenic 45.0%
TCAAAGCCAAGATGACCCTA+AGG - chr5_2:69577453-69577472 Msa0784840:three_prime_UTR 45.0%
GATAGTCCTTAGGGTCATCT+TGG + chr5_2:69577462-69577481 None:intergenic 45.0%
! GTGGCTCTTGATAGTCCTTA+GGG + chr5_2:69577471-69577490 None:intergenic 45.0%
! AGCCATCTGAACTGACTTCA+TGG - chr5_2:69577509-69577528 Msa0784840:three_prime_UTR 45.0%
GACCATGAAGTCAGTTCAGA+TGG + chr5_2:69577514-69577533 None:intergenic 45.0%
! CAAGGAATTGCTTGGGCTTT+TGG - chr5_2:69577649-69577668 Msa0784840:CDS 45.0%
! GCTCTTGTTTACTGTACTGC+TGG - chr5_2:69577685-69577704 Msa0784840:CDS 45.0%
TACTGTACTGCTGGAATCTC+AGG - chr5_2:69577694-69577713 Msa0784840:CDS 45.0%
TTATGTACCGTGTGTTGCAG+GGG - chr5_2:69578241-69578260 Msa0784840:CDS 45.0%
ATAGCCCAAATGTCACTGCT+GGG + chr5_2:69578277-69578296 None:intergenic 45.0%
AATAGCCCAAATGTCACTGC+TGG + chr5_2:69578278-69578297 None:intergenic 45.0%
!!! CATTTGGGCTATTTTTGGCG+AGG - chr5_2:69578285-69578304 Msa0784840:CDS 45.0%
! CTACATGGTGATGCAGTGTT+TGG - chr5_2:69578334-69578353 Msa0784840:CDS 45.0%
!! CAGTGTTTGGGTGCTATTTG+TGG - chr5_2:69578347-69578366 Msa0784840:CDS 45.0%
GTAACCAGGAGCAACAAAGT+TGG + chr5_2:69578432-69578451 None:intergenic 45.0%
! TACACCAAAGGTGATGGTCT+TGG - chr5_2:69578449-69578468 Msa0784840:intron 45.0%
!! GGTCTTGGTGCTGAAATTGT+TGG - chr5_2:69578464-69578483 Msa0784840:intron 45.0%
AAGAACACAGCGAACCCAAT+TGG + chr5_2:69578714-69578733 None:intergenic 45.0%
AATTGGGTTCGCTGTGTTCT+TGG - chr5_2:69578713-69578732 Msa0784840:intron 45.0%
TTGGCCACTATCCCAATTAC+TGG - chr5_2:69578741-69578760 Msa0784840:intron 45.0%
ATTAACCCTGCTCGTAGTCT+TGG - chr5_2:69578771-69578790 Msa0784840:intron 45.0%
TCTTCAACAAGGACCTTGGT+TGG - chr5_2:69578805-69578824 Msa0784840:intron 45.0%
CTTCAACAAGGACCTTGGTT+GGG - chr5_2:69578806-69578825 Msa0784840:intron 45.0%
TTACGTGATCATCCCAACCA+AGG + chr5_2:69578821-69578840 None:intergenic 45.0%
TTCTGGGTGGGACCATTTAT+TGG - chr5_2:69578961-69578980 Msa0784840:intron 45.0%
GCAAGAGCTGCTCCAATAAA+TGG + chr5_2:69578976-69578995 None:intergenic 45.0%
TTCCCAGAAAGACAACCACT+TGG - chr5_2:69577421-69577440 Msa0784840:three_prime_UTR 45.0%
TCCCAGAAAGACAACCACTT+GGG - chr5_2:69577422-69577441 Msa0784840:three_prime_UTR 45.0%
TCCCAAGTGGTTGTCTTTCT+GGG + chr5_2:69577426-69577445 None:intergenic 45.0%
ATCCCAAGTGGTTGTCTTTC+TGG + chr5_2:69577427-69577446 None:intergenic 45.0%
TCAAAGCCAAGATGACCCTA+AGG - chr5_2:69577453-69577472 Msa0784840:three_prime_UTR 45.0%
GATAGTCCTTAGGGTCATCT+TGG + chr5_2:69577462-69577481 None:intergenic 45.0%
! GTGGCTCTTGATAGTCCTTA+GGG + chr5_2:69577471-69577490 None:intergenic 45.0%
! AGCCATCTGAACTGACTTCA+TGG - chr5_2:69577509-69577528 Msa0784840:three_prime_UTR 45.0%
GACCATGAAGTCAGTTCAGA+TGG + chr5_2:69577514-69577533 None:intergenic 45.0%
! CAAGGAATTGCTTGGGCTTT+TGG - chr5_2:69577649-69577668 Msa0784840:CDS 45.0%
! GCTCTTGTTTACTGTACTGC+TGG - chr5_2:69577685-69577704 Msa0784840:CDS 45.0%
TACTGTACTGCTGGAATCTC+AGG - chr5_2:69577694-69577713 Msa0784840:CDS 45.0%
TTATGTACCGTGTGTTGCAG+GGG - chr5_2:69578241-69578260 Msa0784840:CDS 45.0%
ATAGCCCAAATGTCACTGCT+GGG + chr5_2:69578277-69578296 None:intergenic 45.0%
AATAGCCCAAATGTCACTGC+TGG + chr5_2:69578278-69578297 None:intergenic 45.0%
!!! CATTTGGGCTATTTTTGGCG+AGG - chr5_2:69578285-69578304 Msa0784840:CDS 45.0%
! CTACATGGTGATGCAGTGTT+TGG - chr5_2:69578334-69578353 Msa0784840:CDS 45.0%
!! CAGTGTTTGGGTGCTATTTG+TGG - chr5_2:69578347-69578366 Msa0784840:CDS 45.0%
GTAACCAGGAGCAACAAAGT+TGG + chr5_2:69578432-69578451 None:intergenic 45.0%
! TACACCAAAGGTGATGGTCT+TGG - chr5_2:69578449-69578468 Msa0784840:intron 45.0%
!! GGTCTTGGTGCTGAAATTGT+TGG - chr5_2:69578464-69578483 Msa0784840:intron 45.0%
AAGAACACAGCGAACCCAAT+TGG + chr5_2:69578714-69578733 None:intergenic 45.0%
AATTGGGTTCGCTGTGTTCT+TGG - chr5_2:69578713-69578732 Msa0784840:intron 45.0%
TTGGCCACTATCCCAATTAC+TGG - chr5_2:69578741-69578760 Msa0784840:intron 45.0%
ATTAACCCTGCTCGTAGTCT+TGG - chr5_2:69578771-69578790 Msa0784840:intron 45.0%
TCTTCAACAAGGACCTTGGT+TGG - chr5_2:69578805-69578824 Msa0784840:intron 45.0%
CTTCAACAAGGACCTTGGTT+GGG - chr5_2:69578806-69578825 Msa0784840:intron 45.0%
TTACGTGATCATCCCAACCA+AGG + chr5_2:69578821-69578840 None:intergenic 45.0%
TTCTGGGTGGGACCATTTAT+TGG - chr5_2:69578961-69578980 Msa0784840:intron 45.0%
GCAAGAGCTGCTCCAATAAA+TGG + chr5_2:69578976-69578995 None:intergenic 45.0%
!!! AATATTTTATCAAATTATTA+TGG + chr5_2:69578117-69578136 None:intergenic 5.0%
!!! AATATTTTATCAAATTATTA+TGG + chr5_2:69578117-69578136 None:intergenic 5.0%
CTTTGAGCTGCAATCCCAAG+TGG + chr5_2:69577439-69577458 None:intergenic 50.0%
! GGTGGCTCTTGATAGTCCTT+AGG + chr5_2:69577472-69577491 None:intergenic 50.0%
! GGAATTGCTTGGGCTTTTGG+TGG - chr5_2:69577652-69577671 Msa0784840:CDS 50.0%
TATGTACCGTGTGTTGCAGG+GGG - chr5_2:69578242-69578261 Msa0784840:CDS 50.0%
!! TTGGGTGCTATTTGTGGTGC+TGG - chr5_2:69578353-69578372 Msa0784840:CDS 50.0%
!! TGTGGTGCTGGTGTTGTGAA+AGG - chr5_2:69578365-69578384 Msa0784840:CDS 50.0%
GTTGCTCCTGGTTACACCAA+AGG - chr5_2:69578437-69578456 Msa0784840:intron 50.0%
! CCATCACCTTTGGTGTAACC+AGG + chr5_2:69578446-69578465 None:intergenic 50.0%
CCTGGTTACACCAAAGGTGA+TGG - chr5_2:69578443-69578462 Msa0784840:intron 50.0%
AGCACCAAGACCATCACCTT+TGG + chr5_2:69578456-69578475 None:intergenic 50.0%
TCTGGCGCTACGTTTAGCAT+CGG + chr5_2:69578525-69578544 None:intergenic 50.0%
TACGGGAACATGAGAGTCTC+TGG + chr5_2:69578543-69578562 None:intergenic 50.0%
ACAGCGAACCCAATTGGCAA+TGG + chr5_2:69578708-69578727 None:intergenic 50.0%
CGCTGTGTTCTTGGTTCACT+TGG - chr5_2:69578722-69578741 Msa0784840:intron 50.0%
TTGCAGTGGATCTTCTGGGT+GGG - chr5_2:69578949-69578968 Msa0784840:intron 50.0%
TCCAGCTCGTGTGTGATGTA+CGG - chr5_2:69579248-69579267 Msa0784840:CDS 50.0%
CTTTGAGCTGCAATCCCAAG+TGG + chr5_2:69577439-69577458 None:intergenic 50.0%
! GGTGGCTCTTGATAGTCCTT+AGG + chr5_2:69577472-69577491 None:intergenic 50.0%
! GGAATTGCTTGGGCTTTTGG+TGG - chr5_2:69577652-69577671 Msa0784840:CDS 50.0%
TATGTACCGTGTGTTGCAGG+GGG - chr5_2:69578242-69578261 Msa0784840:CDS 50.0%
!! TTGGGTGCTATTTGTGGTGC+TGG - chr5_2:69578353-69578372 Msa0784840:CDS 50.0%
!! TGTGGTGCTGGTGTTGTGAA+AGG - chr5_2:69578365-69578384 Msa0784840:CDS 50.0%
GTTGCTCCTGGTTACACCAA+AGG - chr5_2:69578437-69578456 Msa0784840:intron 50.0%
! CCATCACCTTTGGTGTAACC+AGG + chr5_2:69578446-69578465 None:intergenic 50.0%
CCTGGTTACACCAAAGGTGA+TGG - chr5_2:69578443-69578462 Msa0784840:intron 50.0%
AGCACCAAGACCATCACCTT+TGG + chr5_2:69578456-69578475 None:intergenic 50.0%
TCTGGCGCTACGTTTAGCAT+CGG + chr5_2:69578525-69578544 None:intergenic 50.0%
TACGGGAACATGAGAGTCTC+TGG + chr5_2:69578543-69578562 None:intergenic 50.0%
ACAGCGAACCCAATTGGCAA+TGG + chr5_2:69578708-69578727 None:intergenic 50.0%
CGCTGTGTTCTTGGTTCACT+TGG - chr5_2:69578722-69578741 Msa0784840:intron 50.0%
TTGCAGTGGATCTTCTGGGT+GGG - chr5_2:69578949-69578968 Msa0784840:intron 50.0%
TCCAGCTCGTGTGTGATGTA+CGG - chr5_2:69579248-69579267 Msa0784840:CDS 50.0%
!! TCAAACAACGGTGCTGGTGG+TGG + chr5_2:69577490-69577509 None:intergenic 55.0%
GATGGCTCAAACAACGGTGC+TGG + chr5_2:69577496-69577515 None:intergenic 55.0%
ATGTGACCCCCTGCAACACA+CGG + chr5_2:69578251-69578270 None:intergenic 55.0%
GGTGCCAACTTTGTTGCTCC+TGG - chr5_2:69578425-69578444 Msa0784840:intron 55.0%
!! AGCATCGGTGGCTGAGAAGA+CGG + chr5_2:69578510-69578529 None:intergenic 55.0%
CAGCACCAAGACTACGAGCA+GGG + chr5_2:69578779-69578798 None:intergenic 55.0%
CTTGCAGTGGATCTTCTGGG+TGG - chr5_2:69578948-69578967 Msa0784840:intron 55.0%
TCTTGCAGCACTCTACCACG+TGG - chr5_2:69578990-69579009 Msa0784840:CDS 55.0%
!! TGGCTCTGATTACGACCACG+TGG + chr5_2:69579008-69579027 None:intergenic 55.0%
CCAGCTCGTGTGTGATGTAC+GGG - chr5_2:69579249-69579268 Msa0784840:CDS 55.0%
!! TCAAACAACGGTGCTGGTGG+TGG + chr5_2:69577490-69577509 None:intergenic 55.0%
GATGGCTCAAACAACGGTGC+TGG + chr5_2:69577496-69577515 None:intergenic 55.0%
ATGTGACCCCCTGCAACACA+CGG + chr5_2:69578251-69578270 None:intergenic 55.0%
GGTGCCAACTTTGTTGCTCC+TGG - chr5_2:69578425-69578444 Msa0784840:intron 55.0%
!! AGCATCGGTGGCTGAGAAGA+CGG + chr5_2:69578510-69578529 None:intergenic 55.0%
CAGCACCAAGACTACGAGCA+GGG + chr5_2:69578779-69578798 None:intergenic 55.0%
CTTGCAGTGGATCTTCTGGG+TGG - chr5_2:69578948-69578967 Msa0784840:intron 55.0%
TCTTGCAGCACTCTACCACG+TGG - chr5_2:69578990-69579009 Msa0784840:CDS 55.0%
!! TGGCTCTGATTACGACCACG+TGG + chr5_2:69579008-69579027 None:intergenic 55.0%
CCAGCTCGTGTGTGATGTAC+GGG - chr5_2:69579249-69579268 Msa0784840:CDS 55.0%
! GGCTCAAACAACGGTGCTGG+TGG + chr5_2:69577493-69577512 None:intergenic 60.0%
! GGCGCTACGTTTAGCATCGG+TGG + chr5_2:69578522-69578541 None:intergenic 60.0%
GCAGCACCAAGACTACGAGC+AGG + chr5_2:69578780-69578799 None:intergenic 60.0%
CCCGTACATCACACACGAGC+TGG + chr5_2:69579252-69579271 None:intergenic 60.0%
! GGCTCAAACAACGGTGCTGG+TGG + chr5_2:69577493-69577512 None:intergenic 60.0%
! GGCGCTACGTTTAGCATCGG+TGG + chr5_2:69578522-69578541 None:intergenic 60.0%
GCAGCACCAAGACTACGAGC+AGG + chr5_2:69578780-69578799 None:intergenic 60.0%
CCCGTACATCACACACGAGC+TGG + chr5_2:69579252-69579271 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 69577327 69579362 69577327 ID=Msa0784840;Name=Msa0784840
chr5_2 mRNA 69577327 69579362 69577327 ID=Msa0784840-mRNA-1;Parent=Msa0784840;Name=Msa0784840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=52|1|1|1|1|1|4|315|289
chr5_2 exon 69577327 69577734 69577327 ID=Msa0784840-mRNA-1:exon:20937;Parent=Msa0784840-mRNA-1
chr5_2 exon 69577853 69577993 69577853 ID=Msa0784840-mRNA-1:exon:20936;Parent=Msa0784840-mRNA-1
chr5_2 exon 69578130 69578428 69578130 ID=Msa0784840-mRNA-1:exon:20935;Parent=Msa0784840-mRNA-1
chr5_2 exon 69578974 69579362 69578974 ID=Msa0784840-mRNA-1:exon:20934;Parent=Msa0784840-mRNA-1
chr5_2 five_prime_UTR 69579311 69579362 69579311 ID=Msa0784840-mRNA-1:five_prime_utr;Parent=Msa0784840-mRNA-1
chr5_2 CDS 69578974 69579310 69578974 ID=Msa0784840-mRNA-1:cds;Parent=Msa0784840-mRNA-1
chr5_2 CDS 69578130 69578428 69578130 ID=Msa0784840-mRNA-1:cds;Parent=Msa0784840-mRNA-1
chr5_2 CDS 69577853 69577993 69577853 ID=Msa0784840-mRNA-1:cds;Parent=Msa0784840-mRNA-1
chr5_2 CDS 69577642 69577734 69577642 ID=Msa0784840-mRNA-1:cds;Parent=Msa0784840-mRNA-1
chr5_2 three_prime_UTR 69577327 69577641 69577327 ID=Msa0784840-mRNA-1:three_prime_utr;Parent=Msa0784840-mRNA-1
Gene Sequence

>Msa0784840

ATGGAAGCTAAAGAACAGGATGTGTCTTTAGGAGCCAACAAATTCCCAGAAAGACAACCACTTGGGATTGCAGCTCAAAGCCAAGATGACCCTAAGGACTATCAAGAGCCACCACCAGCACCGTTGTTTGAGCCATCTGAACTGACTTCATGGTCTTTCTATAGAGCTGGGATAGCTGAGTTCGTTGCTACTTTCCTTTTTCTTTATATCACTGTTTTGACTGTTATGGGTGTTGTTAGAGCTGATTCTAAGTGTAAGACTGTGGGAATTCAAGGAATTGCTTGGGCTTTTGGTGGCATGATCTTTGCTCTTGTTTACTGTACTGCTGGAATCTCAGGGGGTCACATAAACCCAGCAGTGACATTTGGGCTATTTTTGGCGAGGAAATTGTCCTTGACAAGAGCATTGTTCTACATGGTGATGCAGTGTTTGGGTGCTATTTGTGGTGCTGGTGTTGTGAAAGGTTTTGAAGGAAAGACAAGATTTGGAGATCTAAAAGGTGGTGCCAACTTTGTTGCTCCTGGTTACACCAAAGGTGATGGTCTTGGTGCTGAAATTGTTGGCACTTTCATTCTTGTCTACACCGTCTTCTCAGCCACCGATGCTAAACGTAGCGCCAGAGACTCTCATGTTCCCATTTTGGCACCATTGCCAATTGGGTTCGCTGTGTTCTTGGTTCACTTGGCCACTATCCCAATTACTGGAACTGGTATTAACCCTGCTCGTAGTCTTGGTGCTGCTATTATCTTCAACAAGGACCTTGGTTGGGATGATCACTGGATCTTCTGGGTGGGACCATTTATTGGAGCAGCTCTTGCAGCACTCTACCACGTGGTCGTAATCAGAGCCATTCCCTTCAAGTCTAAGTGA
Protein sequence

>Msa0784840

MEAKEQDVSLGANKFPERQPLGIAAQSQDDPKDYQEPPPAPLFEPSELTSWSFYRAGIAEFVATFLFLYITVLTVMGVVRADSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYMVMQCLGAICGAGVVKGFEGKTRFGDLKGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDLGWDDHWIFWVGPFIGAALAALYHVVVIRAIPFKSK*