AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0619390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619390 MtrunA17_Chr8g0384741 97.000 200 6 0 1 200 343 542 4.92e-141 404
Msa0619390 MtrunA17_Chr3g0124811 59.296 199 81 0 1 199 292 490 4.50e-90 272
Msa0619390 MtrunA17_Chr8g0372381 47.959 196 102 0 1 196 283 478 3.59e-58 190
Msa0619390 MtrunA17_Chr2g0328781 46.429 196 105 0 2 197 298 493 7.30e-57 187
Msa0619390 MtrunA17_Chr1g0159811 60.150 133 53 0 1 133 290 422 4.58e-55 182
Msa0619390 MtrunA17_Chr4g0032441 50.000 184 92 0 2 185 283 466 1.29e-52 175
Msa0619390 MtrunA17_Chr3g0129271 45.570 79 43 0 1 79 141 219 4.65e-16 74.3
Msa0619390 MtrunA17_Chr2g0310091 30.147 136 92 2 30 164 404 537 1.28e-13 68.6
Msa0619390 MtrunA17_Chr2g0294411 25.962 208 137 5 5 196 370 576 2.35e-13 67.8
Msa0619390 MtrunA17_Chr3g0118081 25.786 159 112 2 2 156 359 515 8.25e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619390 AT4G34240.3 60.000 200 80 0 1 200 207 406 1.51e-88 266
Msa0619390 AT4G34240.4 60.000 200 80 0 1 200 334 533 2.56e-87 267
Msa0619390 AT4G34240.1 60.000 200 80 0 1 200 349 548 3.43e-87 267
Msa0619390 AT1G44170.3 58.883 197 81 0 1 197 223 419 2.70e-86 261
Msa0619390 AT1G44170.1 58.883 197 81 0 1 197 286 482 1.34e-85 261
Msa0619390 AT1G44170.2 58.883 197 81 0 1 197 286 482 1.34e-85 261
Msa0619390 AT4G36250.1 48.980 196 100 0 2 197 286 481 9.67e-59 191
Msa0619390 AT1G79440.1 33.803 142 89 3 19 157 382 521 6.45e-16 75.9
Msa0619390 AT3G66658.2 27.885 208 133 5 5 196 370 576 6.83e-14 69.7
Msa0619390 AT3G66658.1 28.834 163 110 2 5 161 370 532 3.50e-13 67.8
Msa0619390 AT1G74920.2 27.711 166 113 5 2 162 324 487 2.28e-12 65.5
Msa0619390 AT1G74920.1 27.711 166 113 5 2 162 329 492 2.42e-12 65.5

Find 134 sgRNAs with CRISPR-Local

Find 287 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACAGATAGCAGCTTTAA+AGG 0.191916 4_2:-70498079 Msa0619390:intron
GTTATGCAAGAGGAGATATT+TGG 0.197595 4_2:-70497766 Msa0619390:CDS
GATTGCTCCAACTATCTTAT+TGG 0.199481 4_2:-70497809 Msa0619390:CDS
TCCAGGAGTGCAGTTGTTTC+AGG 0.225324 4_2:+70499004 None:intergenic
AGTATATGGTTGGTGAAGTT+TGG 0.247638 4_2:+70500997 None:intergenic
ACAGTAATAATTGGCAAAAT+TGG 0.249721 4_2:+70497742 None:intergenic
GCAACTCGTGGTTTGCCTTT+TGG 0.265536 4_2:-70496897 Msa0619390:CDS
TATATAAAACTGATTTCTTA+TGG 0.269097 4_2:+70496814 None:intergenic
AGCAGCTTTAAAGGAAGAAT+TGG 0.292732 4_2:-70498070 Msa0619390:five_prime_UTR
ATAAATTTATTCACAGTGAT+TGG 0.311303 4_2:+70496539 None:intergenic
ATTTAAGGACGAAAAGTATA+TGG 0.319662 4_2:+70500983 None:intergenic
ATGGTACTCACAGTAATAAT+TGG 0.320472 4_2:+70497733 None:intergenic
CACTGCGTTGCCCGCGGAAA+TGG 0.344228 4_2:+70499132 None:intergenic
CAGATAATTCTTGCTTTGCT+TGG 0.345687 4_2:-70496699 Msa0619390:CDS
ATTCACAGTGATTGGGCCTC+TGG 0.347371 4_2:+70496547 None:intergenic
CTCTTCTAACATCTTCACTA+TGG 0.350829 4_2:+70500241 None:intergenic
CCATGGACTCACTTTAAGTT+AGG 0.361327 4_2:-70500911 Msa0619390:five_prime_UTR
GAAAATAAACAAGTATTTGA+TGG 0.363766 4_2:-70500356 Msa0619390:five_prime_UTR
TCCTGAAACAACTGCACTCC+TGG 0.366164 4_2:-70499005 Msa0619390:five_prime_UTR
GAAATAGAATTCAAGGTTGT+TGG 0.372438 4_2:+70500832 None:intergenic
AAAGTATCTTATCCCACTTC+TGG 0.373046 4_2:+70498981 None:intergenic
TAATTCTTGCTTTGCTTGGA+TGG 0.383020 4_2:-70496695 Msa0619390:CDS
GTATATGGTTGGTGAAGTTT+GGG 0.386054 4_2:+70500998 None:intergenic
TGTATATGGAGGGTACCTTA+TGG 0.386947 4_2:+70496770 None:intergenic
GTTATATATGCTTCTAGTCT+AGG 0.388649 4_2:+70500173 None:intergenic
TCAACTAGAAATAGAATTCA+AGG 0.390007 4_2:+70500825 None:intergenic
CGAATGGCGGATTTCCCAAT+TGG 0.395995 4_2:-70500267 Msa0619390:five_prime_UTR
TCTTCACTATGGCCTCCAAT+TGG 0.399929 4_2:+70500252 None:intergenic
GCAAGCAGGGATGATGTTGC+AGG 0.410513 4_2:+70499085 None:intergenic
TATGTGGACAAGATATCTTC+TGG 0.414474 4_2:-70497536 Msa0619390:CDS
TAAATTTATTCACAGTGATT+GGG 0.421081 4_2:+70496540 None:intergenic
GCGGAAATGGCTCCAATGAC+TGG 0.421715 4_2:+70499145 None:intergenic
TTATCATTGGATCCAGTCAT+TGG 0.424102 4_2:-70499157 Msa0619390:five_prime_UTR
AGATATGCAGCCAAAGGCTT+TGG 0.424118 4_2:+70497590 None:intergenic
GGAGGATAATAGCTGGCAAA+TGG 0.425073 4_2:-70498242 Msa0619390:five_prime_UTR
CCTACCTGCAGTGTTATCAT+TGG 0.425905 4_2:-70499170 Msa0619390:intron
AAAATCAAGGCCAAAGCCTT+TGG 0.435468 4_2:-70497600 Msa0619390:CDS
GGCAAATGGGCATGCAATAG+TGG 0.448828 4_2:-70498228 Msa0619390:five_prime_UTR
AGAGTTGAAATGAAGTTGCT+TGG 0.457326 4_2:+70500542 None:intergenic
TTATGCAAGAGGAGATATTT+GGG 0.457790 4_2:-70497765 Msa0619390:CDS
TAGAGTAGGTCGCATTGTTA+TGG 0.459468 4_2:-70498448 Msa0619390:five_prime_UTR
GAAACTCTTGAATGAGGATA+AGG 0.463840 4_2:-70497969 Msa0619390:CDS
ACTCCAGTGATTCTTGAGCT+TGG 0.463911 4_2:-70498405 Msa0619390:five_prime_UTR
GACACAATCTCTGCTGATGA+TGG 0.464544 4_2:+70499554 None:intergenic
CTTCTAGTCTAGGTTTAGAA+AGG 0.464549 4_2:+70500183 None:intergenic
CAAGGTTTGAGGAAGAACTT+TGG 0.464714 4_2:+70500777 None:intergenic
TTTCTAGCAAATTTGCAAGC+AGG 0.466192 4_2:+70499071 None:intergenic
CTTCACTATGGCCTCCAATT+GGG 0.466557 4_2:+70500253 None:intergenic
GGTTGGTGAAGTTTGGGTAA+TGG 0.468925 4_2:+70501004 None:intergenic
CTTTGCTTGTTAGAGAGCTC+AGG 0.469563 4_2:-70500322 Msa0619390:five_prime_UTR
GTCATTGGAGCCATTTCCGC+GGG 0.470626 4_2:-70499142 Msa0619390:five_prime_UTR
TTTGGAGGAGTTGGAGAAAG+TGG 0.471512 4_2:-70496879 Msa0619390:CDS
TTCTAGCAAATTTGCAAGCA+GGG 0.472320 4_2:+70499072 None:intergenic
ACATTTGAATCAACAACAGC+TGG 0.482725 4_2:+70498372 None:intergenic
TTCCGCCATTGCTTGCTCCT+AGG 0.482912 4_2:-70500731 Msa0619390:intron
TATCAGTCTCTGATCTCTGA+TGG 0.485074 4_2:-70496639 Msa0619390:three_prime_UTR
TTGATTCCGATCCATCCATA+AGG 0.489103 4_2:-70496785 Msa0619390:CDS
TCTTATCCCACTTCTGGTCC+AGG 0.490487 4_2:+70498987 None:intergenic
ACGAGTCGTGCATATTGAGT+TGG 0.490817 4_2:+70497992 None:intergenic
GGAGTTGGAGAAAGTGGAAT+GGG 0.490988 4_2:-70496873 Msa0619390:CDS
CACTTCAAGAACTGAAACAC+TGG 0.491328 4_2:-70499693 Msa0619390:five_prime_UTR
CAAGGTTGTTGGTGATAATG+AGG 0.492261 4_2:+70500843 None:intergenic
TCCTTCTCAGGTGTATATGG+AGG 0.493263 4_2:+70496759 None:intergenic
CAAAGGCTCTGCTACCAACC+AGG 0.493432 4_2:+70500592 None:intergenic
CCTTCTCAGGTGTATATGGA+GGG 0.495634 4_2:+70496760 None:intergenic
GAGTTGAAATGAAGTTGCTT+GGG 0.495918 4_2:+70500543 None:intergenic
GGAACATCCAATAAGATAGT+TGG 0.497071 4_2:+70497802 None:intergenic
CAACACAACTCCTAGTGGTT+CGG 0.497401 4_2:+70499532 None:intergenic
CCTCCAAGCTCAAGAATCAC+TGG 0.501775 4_2:+70498402 None:intergenic
CTGCACTCCTGGACCAGAAG+TGG 0.504845 4_2:-70498994 Msa0619390:five_prime_UTR
ATCAGTCTCTGATCTCTGAT+GGG 0.511456 4_2:-70496638 Msa0619390:three_prime_UTR
AGAGCCAATCTTACAAGCGT+TGG 0.514311 4_2:+70498156 None:intergenic
AAACAATGAGCAACTGAAGA+AGG 0.517946 4_2:-70497561 Msa0619390:CDS
TGTTGTTAAATTGTTTGCAA+AGG 0.518370 4_2:+70500575 None:intergenic
AGTTCTTCATAACAGTGCCC+TGG 0.518511 4_2:-70500610 Msa0619390:five_prime_UTR
AGTGGAATGGGTTGCTACCA+TGG 0.521895 4_2:-70496861 Msa0619390:CDS
GGATGTTCCACAAGAAGCTA+TGG 0.525082 4_2:-70497788 Msa0619390:CDS
TGCATAACCATAGCTTCTTG+TGG 0.525176 4_2:+70497781 None:intergenic
TCATAGTAAAACAAGGTTTG+AGG 0.525805 4_2:+70500766 None:intergenic
GAGGATAATAGCTGGCAAAT+GGG 0.531521 4_2:-70498241 Msa0619390:five_prime_UTR
GATGTTAGAAGAGAAAGAGA+AGG 0.533255 4_2:-70500231 Msa0619390:five_prime_UTR
ATGGCGGATTTCCCAATTGG+AGG 0.535856 4_2:-70500264 Msa0619390:five_prime_UTR
TCTGCAGTAAGAGTTGTTGA+AGG 0.537984 4_2:-70499034 Msa0619390:five_prime_UTR
CATCACATGAAGATTTCGCC+TGG 0.539665 4_2:+70499719 None:intergenic
CCAGTGATTCTTGAGCTTGG+AGG 0.540889 4_2:-70498402 Msa0619390:five_prime_UTR
CTTTCTCCAACTCCTCCAAA+AGG 0.541724 4_2:+70496882 None:intergenic
AAGGACGAAAAGTATATGGT+TGG 0.549183 4_2:+70500987 None:intergenic
ACACTGGATGAAACCTGAAA+AGG 0.549602 4_2:-70499677 Msa0619390:intron
AGGAGTTGGAGAAAGTGGAA+TGG 0.554064 4_2:-70496874 Msa0619390:CDS
AGATTATGCAACATAGTCCA+TGG 0.555313 4_2:-70500928 Msa0619390:five_prime_UTR
GTGAAGTTTGGGTAATGGAA+AGG 0.557326 4_2:+70501009 None:intergenic
CCTAACTTAAAGTGAGTCCA+TGG 0.563870 4_2:+70500911 None:intergenic
TATGGAGGGTACCTTATGGA+TGG 0.573766 4_2:+70496774 None:intergenic
TATCAAAAGAGAACTTTCCA+TGG 0.574054 4_2:+70496844 None:intergenic
GCTTTAGTATAATAAAATCA+AGG 0.574080 4_2:-70497613 Msa0619390:CDS
GGTTTGAGGAAGAACTTTGG+TGG 0.575323 4_2:+70500780 None:intergenic
CATTTCCGCGGGCAACGCAG+TGG 0.577408 4_2:-70499131 Msa0619390:five_prime_UTR
CTGCAGTAAGAGTTGTTGAA+GGG 0.582509 4_2:-70499033 Msa0619390:five_prime_UTR
AGAAGCTATGGTTATGCAAG+AGG 0.586940 4_2:-70497776 Msa0619390:CDS
GCAACTGAAGAAGGATTATG+TGG 0.588911 4_2:-70497552 Msa0619390:CDS
TTTGTAAGGTTGAGGACCAG+AGG 0.589148 4_2:-70496563 Msa0619390:three_prime_UTR
CCCTCCATATACACCTGAGA+AGG 0.591816 4_2:-70496760 Msa0619390:CDS
AGGGTACCTTATGGATGGAT+CGG 0.593890 4_2:+70496779 None:intergenic
GAGATTGTGTCCGAACCACT+AGG 0.597033 4_2:-70499542 Msa0619390:five_prime_UTR
AGTCATTGGAGCCATTTCCG+CGG 0.600289 4_2:-70499143 Msa0619390:five_prime_UTR
TTGGTGCAGGTTGCAACTCG+TGG 0.603431 4_2:-70496909 Msa0619390:intron
CTTCATAACAGTGCCCTGGT+TGG 0.604404 4_2:-70500606 Msa0619390:five_prime_UTR
ACTGCGAGGAGGATAATAGC+TGG 0.604969 4_2:-70498249 Msa0619390:five_prime_UTR
CAAAACCACTGCGTTGCCCG+CGG 0.605069 4_2:+70499126 None:intergenic
GTGAAGAGATATGCAGCCAA+AGG 0.606873 4_2:+70497584 None:intergenic
GTGTTATGCAACTCTATCTG+TGG 0.608199 4_2:-70500390 Msa0619390:five_prime_UTR
ACTCGTGAAACTCTTGAATG+AGG 0.610650 4_2:-70497975 Msa0619390:CDS
TGGACAAGATATCTTCTGGA+GGG 0.613322 4_2:-70497532 Msa0619390:CDS
TGCACTCCTGGACCAGAAGT+GGG 0.619653 4_2:-70498993 Msa0619390:five_prime_UTR
TGAAATTTCAGTTCACTGCG+AGG 0.626166 4_2:-70498263 Msa0619390:intron
TACCTAGGAGCAAGCAATGG+CGG 0.626311 4_2:+70500729 None:intergenic
CAAGCAATGGCGGAAGACAG+AGG 0.629441 4_2:+70500739 None:intergenic
TACTCAGGTAGTGCTAGAGT+AGG 0.631910 4_2:-70498462 Msa0619390:intron
TGCAGTAAGAGTTGTTGAAG+GGG 0.632245 4_2:-70499032 Msa0619390:five_prime_UTR
AGACAAAGAGCTACGAATGG+CGG 0.643657 4_2:-70500280 Msa0619390:five_prime_UTR
AAAGGCTCTGCTACCAACCA+GGG 0.646284 4_2:+70500593 None:intergenic
GTGGACAAGATATCTTCTGG+AGG 0.652280 4_2:-70497533 Msa0619390:CDS
GGTCTAAATGATGATGTGCA+AGG 0.655883 4_2:-70496674 Msa0619390:exon
GTCTAAATGATGATGTGCAA+GGG 0.657116 4_2:-70496673 Msa0619390:exon
ATGATCAACACAACTCCTAG+TGG 0.658303 4_2:+70499527 None:intergenic
TCAGTCTCTGATCTCTGATG+GGG 0.664207 4_2:-70496637 Msa0619390:three_prime_UTR
GCAAGACAAAGAGCTACGAA+TGG 0.673266 4_2:-70500283 Msa0619390:five_prime_UTR
ATGTACCTAGGAGCAAGCAA+TGG 0.680273 4_2:+70500726 None:intergenic
AATTTCAGTTCACTGCGAGG+AGG 0.681260 4_2:-70498260 Msa0619390:intron
TTGTGTTGATCATATCAACA+TGG 0.681886 4_2:-70499517 Msa0619390:five_prime_UTR
GTTTGGGTAATGGAAAGGAG+TGG 0.684376 4_2:+70501014 None:intergenic
GTTGCAGGAGAAACTTCTGA+TGG 0.692797 4_2:+70499100 None:intergenic
ACTAGAAGCATATATAACCG+AGG 0.707816 4_2:-70500168 Msa0619390:intron
TGGGATAAGATACTTTACAC+AGG 0.716272 4_2:-70498974 Msa0619390:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACAAAACAAAAAATT+TGG - chr4_2:70496589-70496608 Msa0619390:three_prime_UTR 10.0%
!! TTATTAATGTTAATAATTGT+TGG - chr4_2:70498815-70498834 Msa0619390:intron 10.0%
!! ATAAAAAAGTTACATATATT+TGG - chr4_2:70498931-70498950 Msa0619390:intron 10.0%
!!! AAACATTTTTTTAATATACG+AGG + chr4_2:70496521-70496540 None:intergenic 15.0%
!! AATTGTAATTTCATCATAAT+TGG - chr4_2:70496821-70496840 Msa0619390:CDS 15.0%
!!! CTTAATTTATCCTTTTATAT+AGG + chr4_2:70497504-70497523 None:intergenic 15.0%
!! CACAAAATAACAATTATAAA+TGG + chr4_2:70497600-70497619 None:intergenic 15.0%
!!! CATTTATAATTGTTATTTTG+TGG - chr4_2:70497598-70497617 Msa0619390:CDS 15.0%
!!! AGTTTTTATCTTTTCTTTTT+GGG - chr4_2:70498202-70498221 Msa0619390:five_prime_UTR 15.0%
!!! TATATAAAACTGATTTCTTA+TGG + chr4_2:70500658-70500677 None:intergenic 15.0%
!!! ATTTTTTTAATATACGAGGA+GGG + chr4_2:70496517-70496536 None:intergenic 20.0%
!!! TTTTTGTTTTGTTTTTTGAG+AGG + chr4_2:70496586-70496605 None:intergenic 20.0%
!! GTAAAGAAACAAAAAGTAAA+TGG + chr4_2:70496775-70496794 None:intergenic 20.0%
!!! TGATGAAATTACAATTTTCT+TGG + chr4_2:70496817-70496836 None:intergenic 20.0%
!! TTAATTCTATTTGCTTAAGA+AGG - chr4_2:70497018-70497037 Msa0619390:intron 20.0%
!!! ACAATAATGTTCTTTTTATG+TGG - chr4_2:70497042-70497061 Msa0619390:intron 20.0%
!! GAAAATAAACAAGTATTTGA+TGG - chr4_2:70497113-70497132 Msa0619390:intron 20.0%
!! ATAAACAATAGAAACAAAAG+AGG + chr4_2:70497341-70497360 None:intergenic 20.0%
!! TAAGATATTTACAATGCTAA+TGG + chr4_2:70497670-70497689 None:intergenic 20.0%
!! TAAATTGCATTTGGTTATAA+CGG - chr4_2:70498020-70498039 Msa0619390:CDS 20.0%
!! TTTGTGAAATTATATTTGAG+TGG + chr4_2:70498129-70498148 None:intergenic 20.0%
!!! CAGTTTTTATCTTTTCTTTT+TGG - chr4_2:70498201-70498220 Msa0619390:five_prime_UTR 20.0%
!! TAAAATCTTTATCAATGGAA+AGG + chr4_2:70498276-70498295 None:intergenic 20.0%
!! AATATAAACAACAAGTTCAA+GGG + chr4_2:70499143-70499162 None:intergenic 20.0%
!! AAATATAAACAACAAGTTCA+AGG + chr4_2:70499144-70499163 None:intergenic 20.0%
!! TATAGATGAAAATATGTTAC+TGG + chr4_2:70499178-70499197 None:intergenic 20.0%
!! GCTTTAGTATAATAAAATCA+AGG - chr4_2:70499856-70499875 Msa0619390:intron 20.0%
!! TTTCATAAATCTATTGTTCT+CGG - chr4_2:70500055-70500074 Msa0619390:intron 20.0%
!! TTCTCAAATTATTATTGTTG+TGG + chr4_2:70500360-70500379 None:intergenic 20.0%
!! AACCTTACAAAAAAAAATGT+AGG + chr4_2:70500897-70500916 None:intergenic 20.0%
!! TAAATTTATTCACAGTGATT+GGG + chr4_2:70500932-70500951 None:intergenic 20.0%
!! ATAAATTTATTCACAGTGAT+TGG + chr4_2:70500933-70500952 None:intergenic 20.0%
!! ATTTAAGGACGAAAAGTATA+TGG + chr4_2:70496489-70496508 None:intergenic 25.0%
!!! CATTTTTTTAATATACGAGG+AGG + chr4_2:70496518-70496537 None:intergenic 25.0%
!! AACAAAAAATTTGGTAGTCA+AGG - chr4_2:70496598-70496617 Msa0619390:three_prime_UTR 25.0%
! TCAACTAGAAATAGAATTCA+AGG + chr4_2:70496647-70496666 None:intergenic 25.0%
! TGTTGTTAAATTGTTTGCAA+AGG + chr4_2:70496897-70496916 None:intergenic 25.0%
! TTATGTGGTTTATATTGTGA+AGG - chr4_2:70497057-70497076 Msa0619390:intron 25.0%
!! ATTTATCCTTTTATATAGGC+TGG + chr4_2:70497500-70497519 None:intergenic 25.0%
! CAAACTTATTGCCAATAAAT+GGG - chr4_2:70497571-70497590 Msa0619390:CDS 25.0%
!! AGGTAATTAAATTGATGGTA+AGG + chr4_2:70497694-70497713 None:intergenic 25.0%
! AAAATGTACACACATAGAAA+CGG + chr4_2:70497717-70497736 None:intergenic 25.0%
!! TTCTTTGTAATTACCTTTTC+AGG + chr4_2:70497808-70497827 None:intergenic 25.0%
!! TTTCTTTTTCTCCTTCTTTT+AGG - chr4_2:70497869-70497888 Msa0619390:intron 25.0%
! ATATATATACTACATGACAG+TGG + chr4_2:70498072-70498091 None:intergenic 25.0%
! TATATTAATGTCCGAAAACT+TGG - chr4_2:70498089-70498108 Msa0619390:intron 25.0%
! GGAGATAAAATCTTTATCAA+TGG + chr4_2:70498281-70498300 None:intergenic 25.0%
! AGATATGCAATGATTTCATA+GGG + chr4_2:70498555-70498574 None:intergenic 25.0%
! TAGATATGCAATGATTTCAT+AGG + chr4_2:70498556-70498575 None:intergenic 25.0%
! ATAAAACCTTATAGCAGAAT+TGG + chr4_2:70498970-70498989 None:intergenic 25.0%
!! ATAATAGACCAATTTTACTC+AGG - chr4_2:70498992-70499011 Msa0619390:five_prime_UTR 25.0%
!! GTATCAGACAAAATTGTTTT+AGG - chr4_2:70499522-70499541 Msa0619390:five_prime_UTR 25.0%
! ACAGTAATAATTGGCAAAAT+TGG + chr4_2:70499730-70499749 None:intergenic 25.0%
!!! AACATTTACTTTTCCCTTTA+TGG + chr4_2:70499758-70499777 None:intergenic 25.0%
! TAATCCCTTAATTTCATCAA+AGG - chr4_2:70500193-70500212 Msa0619390:five_prime_UTR 25.0%
! TCTACCTTTGATGAAATTAA+GGG + chr4_2:70500200-70500219 None:intergenic 25.0%
! TTCTACCTTTGATGAAATTA+AGG + chr4_2:70500201-70500220 None:intergenic 25.0%
!! TTACGATCTAAATTTTGTAC+AGG - chr4_2:70500261-70500280 Msa0619390:five_prime_UTR 25.0%
! AAATATCACATTGACACATT+TGG - chr4_2:70500395-70500414 Msa0619390:intron 25.0%
! ATGTAGTACATATCTATGTA+TGG - chr4_2:70500474-70500493 Msa0619390:intron 25.0%
! TCATGTCTATATCTTACATT+TGG + chr4_2:70500505-70500524 None:intergenic 25.0%
!! TGAGAAGGAAAAAATTTTGA+GGG - chr4_2:70500724-70500743 Msa0619390:intron 25.0%
! AAAAATATTGCCACCAAAAA+TGG + chr4_2:70500750-70500769 None:intergenic 25.0%
!!! CTCCTACATTTTTTTTTGTA+AGG - chr4_2:70500892-70500911 Msa0619390:five_prime_UTR 25.0%
!!! CATTTTTTTTTGTAAGGTTG+AGG - chr4_2:70500898-70500917 Msa0619390:five_prime_UTR 25.0%
GAAATAGAATTCAAGGTTGT+TGG + chr4_2:70496640-70496659 None:intergenic 30.0%
TCATAGTAAAACAAGGTTTG+AGG + chr4_2:70496706-70496725 None:intergenic 30.0%
! AGGCTTTTCATAGTAAAACA+AGG + chr4_2:70496713-70496732 None:intergenic 30.0%
AAATGGAAAAAGATGTACCT+AGG + chr4_2:70496758-70496777 None:intergenic 30.0%
! TTTTCTTGGCAACATATTTG+TGG + chr4_2:70496803-70496822 None:intergenic 30.0%
GTTATATATGCTTCTAGTCT+AGG + chr4_2:70497299-70497318 None:intergenic 30.0%
TGGTAAAATAAGAGCAATTG+TGG + chr4_2:70497443-70497462 None:intergenic 30.0%
CGATGTGAATCTTTATATTG+TGG + chr4_2:70497463-70497482 None:intergenic 30.0%
AGGATAAATTAAGCTCTTCA+AGG - chr4_2:70497511-70497530 Msa0619390:CDS 30.0%
CCATTTATTGGCAATAAGTT+TGG + chr4_2:70497573-70497592 None:intergenic 30.0%
CCAAACTTATTGCCAATAAA+TGG - chr4_2:70497570-70497589 Msa0619390:CDS 30.0%
ATAAATGGACACCCATTTAT+TGG + chr4_2:70497585-70497604 None:intergenic 30.0%
TAAATGCCATCATAACAAGA+GGG + chr4_2:70497637-70497656 None:intergenic 30.0%
AACGGAGGTAATTAAATTGA+TGG + chr4_2:70497699-70497718 None:intergenic 30.0%
! ATTTTAAATGCAGATTGTCC+AGG - chr4_2:70497732-70497751 Msa0619390:intron 30.0%
! TTGTGTTGATCATATCAACA+TGG - chr4_2:70497952-70497971 Msa0619390:CDS 30.0%
AACATGTTCTACATACACAT+AGG + chr4_2:70497984-70498003 None:intergenic 30.0%
CAGACATTCTAAATTGCATT+TGG - chr4_2:70498011-70498030 Msa0619390:CDS 30.0%
! GAACTATAGTTCCAAGTTTT+CGG + chr4_2:70498103-70498122 None:intergenic 30.0%
TCTTTATCAATGGAAAGGAA+AGG + chr4_2:70498271-70498290 None:intergenic 30.0%
!! GGGTATTGATGTGATAATAT+AGG + chr4_2:70498535-70498554 None:intergenic 30.0%
ATAATGTGATTGAGTTAGAG+TGG - chr4_2:70498601-70498620 Msa0619390:intron 30.0%
TGGTTAATAAGCTCCAAATA+AGG - chr4_2:70498621-70498640 Msa0619390:intron 30.0%
!! TATTTGGTCTTTTAACACTC+CGG + chr4_2:70498758-70498777 None:intergenic 30.0%
CTTAAGAGTTAAGACTTTAG+AGG + chr4_2:70498850-70498869 None:intergenic 30.0%
!! CTCTAAAGTCTTAACTCTTA+AGG - chr4_2:70498848-70498867 Msa0619390:intron 30.0%
! GAAGAATTGGAGCAATTTTT+GGG - chr4_2:70499412-70499431 Msa0619390:intron 30.0%
!! AATTTTTGGGAAAGATCTGA+TGG - chr4_2:70499425-70499444 Msa0619390:intron 30.0%
!!! TCAGACAAAATTGTTTTAGG+AGG - chr4_2:70499525-70499544 Msa0619390:five_prime_UTR 30.0%
TCCATCTTGGTTATAAAGAT+TGG - chr4_2:70499582-70499601 Msa0619390:intron 30.0%
TCCAATCTTTATAACCAAGA+TGG + chr4_2:70499586-70499605 None:intergenic 30.0%
TTATGCAAGAGGAGATATTT+GGG - chr4_2:70499704-70499723 Msa0619390:five_prime_UTR 30.0%
ATGGTACTCACAGTAATAAT+TGG + chr4_2:70499739-70499758 None:intergenic 30.0%
TATTACTGTGAGTACCATAA+AGG - chr4_2:70499741-70499760 Msa0619390:intron 30.0%
ATTACTGTGAGTACCATAAA+GGG - chr4_2:70499742-70499761 Msa0619390:intron 30.0%
TACTACATTTGATGAATGAG+AGG + chr4_2:70500462-70500481 None:intergenic 30.0%
GTAAGATATAGACATGATGA+TGG - chr4_2:70500508-70500527 Msa0619390:intron 30.0%
ACTTGTTTGTACAACAATGT+TGG - chr4_2:70500541-70500560 Msa0619390:five_prime_UTR 30.0%
TATCAAAAGAGAACTTTCCA+TGG + chr4_2:70500628-70500647 None:intergenic 30.0%
!!! CTCAAAATTTTTTCCTTCTC+AGG + chr4_2:70500725-70500744 None:intergenic 30.0%
! CTGAGAAGGAAAAAATTTTG+AGG - chr4_2:70500723-70500742 Msa0619390:intron 30.0%
!! AAAATTTTGAGGGCCATTTT+TGG - chr4_2:70500734-70500753 Msa0619390:five_prime_UTR 30.0%
ACAAAAAAAAATGTAGGAGC+AGG + chr4_2:70500891-70500910 None:intergenic 30.0%
!! GTATATGGTTGGTGAAGTTT+GGG + chr4_2:70496474-70496493 None:intergenic 35.0%
!! AGTATATGGTTGGTGAAGTT+TGG + chr4_2:70496475-70496494 None:intergenic 35.0%
! AAGGACGAAAAGTATATGGT+TGG + chr4_2:70496485-70496504 None:intergenic 35.0%
AGATTATGCAACATAGTCCA+TGG - chr4_2:70496541-70496560 Msa0619390:three_prime_UTR 35.0%
GAGTTGAAATGAAGTTGCTT+GGG + chr4_2:70496929-70496948 None:intergenic 35.0%
AGAGTTGAAATGAAGTTGCT+TGG + chr4_2:70496930-70496949 None:intergenic 35.0%
CTCTTCTAACATCTTCACTA+TGG + chr4_2:70497231-70497250 None:intergenic 35.0%
GATGTTAGAAGAGAAAGAGA+AGG - chr4_2:70497238-70497257 Msa0619390:intron 35.0%
CTTCTAGTCTAGGTTTAGAA+AGG + chr4_2:70497289-70497308 None:intergenic 35.0%
! ACTAGAAGCATATATAACCG+AGG - chr4_2:70497301-70497320 Msa0619390:intron 35.0%
AGGAAATTGATTGAAGACCT+CGG + chr4_2:70497321-70497340 None:intergenic 35.0%
TCAGAACCAGCCTATATAAA+AGG - chr4_2:70497491-70497510 Msa0619390:intron 35.0%
! AGTTTGGTTTCTCTTAAGCA+AGG + chr4_2:70497557-70497576 None:intergenic 35.0%
CTAAATGCCATCATAACAAG+AGG + chr4_2:70497638-70497657 None:intergenic 35.0%
! TGAAGTACTCACCTAAAAGA+AGG + chr4_2:70497883-70497902 None:intergenic 35.0%
TTATCATTGGATCCAGTCAT+TGG - chr4_2:70498312-70498331 Msa0619390:intron 35.0%
TTCTAGCAAATTTGCAAGCA+GGG + chr4_2:70498400-70498419 None:intergenic 35.0%
! TTTCTAGCAAATTTGCAAGC+AGG + chr4_2:70498401-70498420 None:intergenic 35.0%
! AAAGTATCTTATCCCACTTC+TGG + chr4_2:70498491-70498510 None:intergenic 35.0%
TGGGATAAGATACTTTACAC+AGG - chr4_2:70498495-70498514 Msa0619390:intron 35.0%
AAAAGATTCATCAAACCGTG+CGG - chr4_2:70498575-70498594 Msa0619390:intron 35.0%
CAATCACATTATTATCCGCA+CGG + chr4_2:70498593-70498612 None:intergenic 35.0%
TTGAACGATTCGTCCTTATT+TGG + chr4_2:70498637-70498656 None:intergenic 35.0%
ATCGTAGCTGGAATAATCAT+TGG - chr4_2:70498673-70498692 Msa0619390:intron 35.0%
TGGTAATCGGGAATTTAAGT+AGG + chr4_2:70498716-70498735 None:intergenic 35.0%
TACTTAAATTCCCGATTACC+AGG - chr4_2:70498715-70498734 Msa0619390:intron 35.0%
TAGTCGCAAAGACTGATATT+TGG + chr4_2:70498774-70498793 None:intergenic 35.0%
! AGAGTTAAGACTTTAGAGGA+GGG + chr4_2:70498846-70498865 None:intergenic 35.0%
! AAGAGTTAAGACTTTAGAGG+AGG + chr4_2:70498847-70498866 None:intergenic 35.0%
TAGCACTACCTGAGTAAAAT+TGG + chr4_2:70499003-70499022 None:intergenic 35.0%
ACATTTGAATCAACAACAGC+TGG + chr4_2:70499100-70499119 None:intergenic 35.0%
! TACACAGATAGCAGCTTTAA+AGG - chr4_2:70499390-70499409 Msa0619390:intron 35.0%
!! AGCAGCTTTAAAGGAAGAAT+TGG - chr4_2:70499399-70499418 Msa0619390:intron 35.0%
! GGAAGAATTGGAGCAATTTT+TGG - chr4_2:70499411-70499430 Msa0619390:intron 35.0%
GAAACTCTTGAATGAGGATA+AGG - chr4_2:70499500-70499519 Msa0619390:intron 35.0%
!!! AAATTGTTTTAGGAGGTCAG+AGG - chr4_2:70499532-70499551 Msa0619390:five_prime_UTR 35.0%
!!! AATTGTTTTAGGAGGTCAGA+GGG - chr4_2:70499533-70499552 Msa0619390:five_prime_UTR 35.0%
AAGAGGGAGAATTGATGTTA+TGG + chr4_2:70499629-70499648 None:intergenic 35.0%
GATTGCTCCAACTATCTTAT+TGG - chr4_2:70499660-70499679 Msa0619390:intron 35.0%
GGAACATCCAATAAGATAGT+TGG + chr4_2:70499670-70499689 None:intergenic 35.0%
GTTATGCAAGAGGAGATATT+TGG - chr4_2:70499703-70499722 Msa0619390:five_prime_UTR 35.0%
! TCTTTTCCTCACATTTTTGC+AGG - chr4_2:70499815-70499834 Msa0619390:intron 35.0%
AAACAATGAGCAACTGAAGA+AGG - chr4_2:70499908-70499927 Msa0619390:intron 35.0%
TATGTGGACAAGATATCTTC+TGG - chr4_2:70499933-70499952 Msa0619390:intron 35.0%
ATCAGTAGACAGAAAAGGAA+AGG - chr4_2:70500086-70500105 Msa0619390:intron 35.0%
TCAAAGGTAGAAACATATGC+AGG - chr4_2:70500209-70500228 Msa0619390:five_prime_UTR 35.0%
! TTTTCCTTCTCAGGTGTATA+TGG + chr4_2:70500716-70500735 None:intergenic 35.0%
CAGATAATTCTTGCTTTGCT+TGG - chr4_2:70500770-70500789 Msa0619390:five_prime_UTR 35.0%
TAATTCTTGCTTTGCTTGGA+TGG - chr4_2:70500774-70500793 Msa0619390:five_prime_UTR 35.0%
! GTCTAAATGATGATGTGCAA+GGG - chr4_2:70500796-70500815 Msa0619390:five_prime_UTR 35.0%
!! GTGAAGTTTGGGTAATGGAA+AGG + chr4_2:70496463-70496482 None:intergenic 40.0%
!!! ACGAGGAGGGTTTTGATTTA+AGG + chr4_2:70496504-70496523 None:intergenic 40.0%
CCTAACTTAAAGTGAGTCCA+TGG + chr4_2:70496561-70496580 None:intergenic 40.0%
! CCATGGACTCACTTTAAGTT+AGG - chr4_2:70496558-70496577 Msa0619390:three_prime_UTR 40.0%
!! CAAGGTTGTTGGTGATAATG+AGG + chr4_2:70496629-70496648 None:intergenic 40.0%
CAAGGTTTGAGGAAGAACTT+TGG + chr4_2:70496695-70496714 None:intergenic 40.0%
GTGTTATGCAACTCTATCTG+TGG - chr4_2:70497079-70497098 Msa0619390:intron 40.0%
!! CTCAGGAAGAATTTTGACAC+TGG - chr4_2:70497164-70497183 Msa0619390:intron 40.0%
GTATTTCAGTTGTCGCATTG+CGG + chr4_2:70497388-70497407 None:intergenic 40.0%
GTTTCTCTTAAGCAAGGTCT+TGG + chr4_2:70497551-70497570 None:intergenic 40.0%
! TCCATTCCCTCTTGTTATGA+TGG - chr4_2:70497628-70497647 Msa0619390:CDS 40.0%
ATGTACACACATAGAAACGG+AGG + chr4_2:70497714-70497733 None:intergenic 40.0%
CACTTCAAGAACTGAAACAC+TGG - chr4_2:70497776-70497795 Msa0619390:CDS 40.0%
ACACTGGATGAAACCTGAAA+AGG - chr4_2:70497792-70497811 Msa0619390:CDS 40.0%
ATGATCAACACAACTCCTAG+TGG + chr4_2:70497945-70497964 None:intergenic 40.0%
CATGACAGTGGTGAATGATA+TGG + chr4_2:70498060-70498079 None:intergenic 40.0%
TCTGCAGTAAGAGTTGTTGA+AGG - chr4_2:70498435-70498454 Msa0619390:five_prime_UTR 40.0%
CTGCAGTAAGAGTTGTTGAA+GGG - chr4_2:70498436-70498455 Msa0619390:five_prime_UTR 40.0%
TGCAGTAAGAGTTGTTGAAG+GGG - chr4_2:70498437-70498456 Msa0619390:five_prime_UTR 40.0%
TTCCAGCTACGATTCAAACT+CGG + chr4_2:70498666-70498685 None:intergenic 40.0%
! GAGTTAAGACTTTAGAGGAG+GGG + chr4_2:70498845-70498864 None:intergenic 40.0%
AGCAGAATTGGCATGCTAAT+TGG + chr4_2:70498958-70498977 None:intergenic 40.0%
AGCATGCCAATTCTGCTATA+AGG - chr4_2:70498961-70498980 Msa0619390:intron 40.0%
TAGAGTAGGTCGCATTGTTA+TGG - chr4_2:70499021-70499040 Msa0619390:five_prime_UTR 40.0%
TGAAATTTCAGTTCACTGCG+AGG - chr4_2:70499206-70499225 Msa0619390:intron 40.0%
GAGGATAATAGCTGGCAAAT+GGG - chr4_2:70499228-70499247 Msa0619390:intron 40.0%
ACTCGTGAAACTCTTGAATG+AGG - chr4_2:70499494-70499513 Msa0619390:intron 40.0%
GTGAGTTTGCATTTCCATCT+TGG - chr4_2:70499569-70499588 Msa0619390:five_prime_UTR 40.0%
CAATCCTTCTGCAACAAAGA+GGG + chr4_2:70499645-70499664 None:intergenic 40.0%
TGCATAACCATAGCTTCTTG+TGG + chr4_2:70499691-70499710 None:intergenic 40.0%
AGAAGCTATGGTTATGCAAG+AGG - chr4_2:70499693-70499712 Msa0619390:five_prime_UTR 40.0%
TGTCTACCTGCAAAAATGTG+AGG + chr4_2:70499824-70499843 None:intergenic 40.0%
AAAATCAAGGCCAAAGCCTT+TGG - chr4_2:70499869-70499888 Msa0619390:intron 40.0%
GCAACTGAAGAAGGATTATG+TGG - chr4_2:70499917-70499936 Msa0619390:intron 40.0%
TGGACAAGATATCTTCTGGA+GGG - chr4_2:70499937-70499956 Msa0619390:intron 40.0%
GTTGCATCAGTAGACAGAAA+AGG - chr4_2:70500081-70500100 Msa0619390:intron 40.0%
TTGTACAACAATGTTGGTGC+AGG - chr4_2:70500547-70500566 Msa0619390:five_prime_UTR 40.0%
TTGATTCCGATCCATCCATA+AGG - chr4_2:70500684-70500703 Msa0619390:intron 40.0%
!! TGTATATGGAGGGTACCTTA+TGG + chr4_2:70500702-70500721 None:intergenic 40.0%
!!! ATTTTGAGGGCCATTTTTGG+TGG - chr4_2:70500737-70500756 Msa0619390:five_prime_UTR 40.0%
! GGTCTAAATGATGATGTGCA+AGG - chr4_2:70500795-70500814 Msa0619390:five_prime_UTR 40.0%
TATCAGTCTCTGATCTCTGA+TGG - chr4_2:70500830-70500849 Msa0619390:five_prime_UTR 40.0%
ATCAGTCTCTGATCTCTGAT+GGG - chr4_2:70500831-70500850 Msa0619390:five_prime_UTR 40.0%
! GATGGGGTGTGTTTTTCTAT+AGG - chr4_2:70500848-70500867 Msa0619390:five_prime_UTR 40.0%
!! GTTTGGGTAATGGAAAGGAG+TGG + chr4_2:70496458-70496477 None:intergenic 45.0%
!! GGTTGGTGAAGTTTGGGTAA+TGG + chr4_2:70496468-70496487 None:intergenic 45.0%
GGTTTGAGGAAGAACTTTGG+TGG + chr4_2:70496692-70496711 None:intergenic 45.0%
ATGTACCTAGGAGCAAGCAA+TGG + chr4_2:70496746-70496765 None:intergenic 45.0%
! GGGCACTGTTATGAAGAACT+AGG + chr4_2:70496859-70496878 None:intergenic 45.0%
AGTTCTTCATAACAGTGCCC+TGG - chr4_2:70496859-70496878 Msa0619390:CDS 45.0%
! CTTTGCTTGTTAGAGAGCTC+AGG - chr4_2:70497147-70497166 Msa0619390:intron 45.0%
GCAAGACAAAGAGCTACGAA+TGG - chr4_2:70497186-70497205 Msa0619390:intron 45.0%
AGACAAAGAGCTACGAATGG+CGG - chr4_2:70497189-70497208 Msa0619390:intron 45.0%
CTTCACTATGGCCTCCAATT+GGG + chr4_2:70497219-70497238 None:intergenic 45.0%
TCTTCACTATGGCCTCCAAT+TGG + chr4_2:70497220-70497239 None:intergenic 45.0%
GCCATCATAACAAGAGGGAA+TGG + chr4_2:70497632-70497651 None:intergenic 45.0%
CATCACATGAAGATTTCGCC+TGG + chr4_2:70497753-70497772 None:intergenic 45.0%
GACACAATCTCTGCTGATGA+TGG + chr4_2:70497918-70497937 None:intergenic 45.0%
CAACACAACTCCTAGTGGTT+CGG + chr4_2:70497940-70497959 None:intergenic 45.0%
CCAATGATAACACTGCAGGT+AGG + chr4_2:70498302-70498321 None:intergenic 45.0%
CCTACCTGCAGTGTTATCAT+TGG - chr4_2:70498299-70498318 Msa0619390:intron 45.0%
GGATCCAATGATAACACTGC+AGG + chr4_2:70498306-70498325 None:intergenic 45.0%
GTTGCAGGAGAAACTTCTGA+TGG + chr4_2:70498372-70498391 None:intergenic 45.0%
ATCCGAGTTTGAATCGTAGC+TGG - chr4_2:70498661-70498680 Msa0619390:intron 45.0%
TACTCAGGTAGTGCTAGAGT+AGG - chr4_2:70499007-70499026 Msa0619390:five_prime_UTR 45.0%
ACTCCAGTGATTCTTGAGCT+TGG - chr4_2:70499064-70499083 Msa0619390:five_prime_UTR 45.0%
AATTTCAGTTCACTGCGAGG+AGG - chr4_2:70499209-70499228 Msa0619390:intron 45.0%
GGAGGATAATAGCTGGCAAA+TGG - chr4_2:70499227-70499246 Msa0619390:intron 45.0%
AGAGCCAATCTTACAAGCGT+TGG + chr4_2:70499316-70499335 None:intergenic 45.0%
ACGAGTCGTGCATATTGAGT+TGG + chr4_2:70499480-70499499 None:intergenic 45.0%
TTCTCCCTCTTTGTTGCAGA+AGG - chr4_2:70499638-70499657 Msa0619390:intron 45.0%
GCAATCCTTCTGCAACAAAG+AGG + chr4_2:70499646-70499665 None:intergenic 45.0%
GGATGTTCCACAAGAAGCTA+TGG - chr4_2:70499681-70499700 Msa0619390:five_prime_UTR 45.0%
AGATATGCAGCCAAAGGCTT+TGG + chr4_2:70499882-70499901 None:intergenic 45.0%
GTGAAGAGATATGCAGCCAA+AGG + chr4_2:70499888-70499907 None:intergenic 45.0%
GTGGACAAGATATCTTCTGG+AGG - chr4_2:70499936-70499955 Msa0619390:intron 45.0%
GTCGAGTGACTGTGTTTCAT+AGG + chr4_2:70500316-70500335 None:intergenic 45.0%
TGAAACACAGTCACTCGACA+CGG - chr4_2:70500317-70500336 Msa0619390:five_prime_UTR 45.0%
CTTTCTCCAACTCCTCCAAA+AGG + chr4_2:70500590-70500609 None:intergenic 45.0%
TTTGGAGGAGTTGGAGAAAG+TGG - chr4_2:70500590-70500609 Msa0619390:five_prime_UTR 45.0%
AGGAGTTGGAGAAAGTGGAA+TGG - chr4_2:70500595-70500614 Msa0619390:five_prime_UTR 45.0%
GGAGTTGGAGAAAGTGGAAT+GGG - chr4_2:70500596-70500615 Msa0619390:five_prime_UTR 45.0%
! AGGGTACCTTATGGATGGAT+CGG + chr4_2:70500693-70500712 None:intergenic 45.0%
!! TATGGAGGGTACCTTATGGA+TGG + chr4_2:70500698-70500717 None:intergenic 45.0%
CCTTCTCAGGTGTATATGGA+GGG + chr4_2:70500712-70500731 None:intergenic 45.0%
TCCTTCTCAGGTGTATATGG+AGG + chr4_2:70500713-70500732 None:intergenic 45.0%
TCAGTCTCTGATCTCTGATG+GGG - chr4_2:70500832-70500851 Msa0619390:five_prime_UTR 45.0%
TTTGTAAGGTTGAGGACCAG+AGG - chr4_2:70500906-70500925 Msa0619390:five_prime_UTR 45.0%
TACCTAGGAGCAAGCAATGG+CGG + chr4_2:70496743-70496762 None:intergenic 50.0%
CTTCATAACAGTGCCCTGGT+TGG - chr4_2:70496863-70496882 Msa0619390:CDS 50.0%
AAAGGCTCTGCTACCAACCA+GGG + chr4_2:70496879-70496898 None:intergenic 50.0%
!! CGAATGGCGGATTTCCCAAT+TGG - chr4_2:70497202-70497221 Msa0619390:intron 50.0%
!! ATGGCGGATTTCCCAATTGG+AGG - chr4_2:70497205-70497224 Msa0619390:intron 50.0%
GAGATTGTGTCCGAACCACT+AGG - chr4_2:70497927-70497946 Msa0619390:CDS 50.0%
AGTCATTGGAGCCATTTCCG+CGG - chr4_2:70498326-70498345 Msa0619390:intron 50.0%
TCCTGAAACAACTGCACTCC+TGG - chr4_2:70498464-70498483 Msa0619390:intron 50.0%
! TCCAGGAGTGCAGTTGTTTC+AGG + chr4_2:70498468-70498487 None:intergenic 50.0%
TCTTATCCCACTTCTGGTCC+AGG + chr4_2:70498485-70498504 None:intergenic 50.0%
AGAGAACGGGTCCTGGTAAT+CGG + chr4_2:70498729-70498748 None:intergenic 50.0%
ATTACCAGGACCCGTTCTCT+TGG - chr4_2:70498729-70498748 Msa0619390:intron 50.0%
TTACCAGGACCCGTTCTCTT+GGG - chr4_2:70498730-70498749 Msa0619390:intron 50.0%
CCTCCAAGCTCAAGAATCAC+TGG + chr4_2:70499070-70499089 None:intergenic 50.0%
CCAGTGATTCTTGAGCTTGG+AGG - chr4_2:70499067-70499086 Msa0619390:five_prime_UTR 50.0%
ACTGCGAGGAGGATAATAGC+TGG - chr4_2:70499220-70499239 Msa0619390:intron 50.0%
GGCAAATGGGCATGCAATAG+TGG - chr4_2:70499241-70499260 Msa0619390:intron 50.0%
CGCTCCAACGCTTGTAAGAT+TGG - chr4_2:70499309-70499328 Msa0619390:intron 50.0%
!! GCAACTCGTGGTTTGCCTTT+TGG - chr4_2:70500572-70500591 Msa0619390:five_prime_UTR 50.0%
!! ACTCGTGGTTTGCCTTTTGG+AGG - chr4_2:70500575-70500594 Msa0619390:five_prime_UTR 50.0%
!! GGTTTGCCTTTTGGAGGAGT+TGG - chr4_2:70500581-70500600 Msa0619390:five_prime_UTR 50.0%
!! AGTGGAATGGGTTGCTACCA+TGG - chr4_2:70500608-70500627 Msa0619390:five_prime_UTR 50.0%
CCCTCCATATACACCTGAGA+AGG - chr4_2:70500709-70500728 Msa0619390:intron 50.0%
ATTCACAGTGATTGGGCCTC+TGG + chr4_2:70500925-70500944 None:intergenic 50.0%
! CAAGCAATGGCGGAAGACAG+AGG + chr4_2:70496733-70496752 None:intergenic 55.0%
TTCCGCCATTGCTTGCTCCT+AGG - chr4_2:70496738-70496757 Msa0619390:CDS 55.0%
CAAAGGCTCTGCTACCAACC+AGG + chr4_2:70496880-70496899 None:intergenic 55.0%
GCGGAAATGGCTCCAATGAC+TGG + chr4_2:70498327-70498346 None:intergenic 55.0%
GTCATTGGAGCCATTTCCGC+GGG - chr4_2:70498327-70498346 Msa0619390:intron 55.0%
GCAAGCAGGGATGATGTTGC+AGG + chr4_2:70498387-70498406 None:intergenic 55.0%
TGCACTCCTGGACCAGAAGT+GGG - chr4_2:70498476-70498495 Msa0619390:intron 55.0%
GAGAACGGGTCCTGGTAATC+GGG + chr4_2:70498728-70498747 None:intergenic 55.0%
ACTCCGGTTCCCAAGAGAAC+GGG + chr4_2:70498742-70498761 None:intergenic 55.0%
CACTCCGGTTCCCAAGAGAA+CGG + chr4_2:70498743-70498762 None:intergenic 55.0%
TTGGTGCAGGTTGCAACTCG+TGG - chr4_2:70500560-70500579 Msa0619390:five_prime_UTR 55.0%
CAAAACCACTGCGTTGCCCG+CGG + chr4_2:70498346-70498365 None:intergenic 60.0%
CTGCACTCCTGGACCAGAAG+TGG - chr4_2:70498475-70498494 Msa0619390:intron 60.0%
GTTCCCAAGAGAACGGGTCC+TGG + chr4_2:70498736-70498755 None:intergenic 60.0%
GGACCCGTTCTCTTGGGAAC+CGG - chr4_2:70498736-70498755 Msa0619390:intron 60.0%
CACTGCGTTGCCCGCGGAAA+TGG + chr4_2:70498340-70498359 None:intergenic 65.0%
CATTTCCGCGGGCAACGCAG+TGG - chr4_2:70498338-70498357 Msa0619390:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 70496443 70501048 70496443 ID=Msa0619390;Name=Msa0619390
chr4_2 mRNA 70496443 70501048 70496443 ID=Msa0619390-mRNA-1;Parent=Msa0619390;Name=Msa0619390-mRNA-1;_AED=0.16;_eAED=0.16;_QI=1317|1|1|1|0.72|0.75|12|243|200
chr4_2 exon 70496443 70496922 70496443 ID=Msa0619390-mRNA-1:exon:20643;Parent=Msa0619390-mRNA-1
chr4_2 exon 70497505 70497654 70497505 ID=Msa0619390-mRNA-1:exon:20642;Parent=Msa0619390-mRNA-1
chr4_2 exon 70497744 70497834 70497744 ID=Msa0619390-mRNA-1:exon:20641;Parent=Msa0619390-mRNA-1
chr4_2 exon 70497923 70498094 70497923 ID=Msa0619390-mRNA-1:exon:20640;Parent=Msa0619390-mRNA-1
chr4_2 exon 70498170 70498274 70498170 ID=Msa0619390-mRNA-1:exon:20639;Parent=Msa0619390-mRNA-1
chr4_2 exon 70498362 70498477 70498362 ID=Msa0619390-mRNA-1:exon:20638;Parent=Msa0619390-mRNA-1
chr4_2 exon 70498975 70499181 70498975 ID=Msa0619390-mRNA-1:exon:20637;Parent=Msa0619390-mRNA-1
chr4_2 exon 70499504 70499600 70499504 ID=Msa0619390-mRNA-1:exon:20636;Parent=Msa0619390-mRNA-1
chr4_2 exon 70499678 70499746 70499678 ID=Msa0619390-mRNA-1:exon:20635;Parent=Msa0619390-mRNA-1
chr4_2 exon 70500169 70500412 70500169 ID=Msa0619390-mRNA-1:exon:20634;Parent=Msa0619390-mRNA-1
chr4_2 exon 70500516 70500630 70500516 ID=Msa0619390-mRNA-1:exon:20633;Parent=Msa0619390-mRNA-1
chr4_2 exon 70500732 70501048 70500732 ID=Msa0619390-mRNA-1:exon:20632;Parent=Msa0619390-mRNA-1
chr4_2 five_prime_UTR 70500732 70501048 70500732 ID=Msa0619390-mRNA-1:five_prime_utr;Parent=Msa0619390-mRNA-1
chr4_2 five_prime_UTR 70500516 70500630 70500516 ID=Msa0619390-mRNA-1:five_prime_utr;Parent=Msa0619390-mRNA-1
chr4_2 five_prime_UTR 70500169 70500412 70500169 ID=Msa0619390-mRNA-1:five_prime_utr;Parent=Msa0619390-mRNA-1
chr4_2 five_prime_UTR 70499678 70499746 70499678 ID=Msa0619390-mRNA-1:five_prime_utr;Parent=Msa0619390-mRNA-1
chr4_2 five_prime_UTR 70499504 70499600 70499504 ID=Msa0619390-mRNA-1:five_prime_utr;Parent=Msa0619390-mRNA-1
chr4_2 five_prime_UTR 70498975 70499181 70498975 ID=Msa0619390-mRNA-1:five_prime_utr;Parent=Msa0619390-mRNA-1
chr4_2 five_prime_UTR 70498362 70498477 70498362 ID=Msa0619390-mRNA-1:five_prime_utr;Parent=Msa0619390-mRNA-1
chr4_2 five_prime_UTR 70498170 70498274 70498170 ID=Msa0619390-mRNA-1:five_prime_utr;Parent=Msa0619390-mRNA-1
chr4_2 five_prime_UTR 70498048 70498094 70498048 ID=Msa0619390-mRNA-1:five_prime_utr;Parent=Msa0619390-mRNA-1
chr4_2 CDS 70497923 70498047 70497923 ID=Msa0619390-mRNA-1:cds;Parent=Msa0619390-mRNA-1
chr4_2 CDS 70497744 70497834 70497744 ID=Msa0619390-mRNA-1:cds;Parent=Msa0619390-mRNA-1
chr4_2 CDS 70497505 70497654 70497505 ID=Msa0619390-mRNA-1:cds;Parent=Msa0619390-mRNA-1
chr4_2 CDS 70496686 70496922 70496686 ID=Msa0619390-mRNA-1:cds;Parent=Msa0619390-mRNA-1
chr4_2 three_prime_UTR 70496443 70496685 70496443 ID=Msa0619390-mRNA-1:three_prime_utr;Parent=Msa0619390-mRNA-1
Gene Sequence

>Msa0619390

ATGGAATCGAAAGACATGTCTCGTATTGTGTCTCCAACTCAATATGCACGACTCGTGAAACTCTTGAATGAGGATAAGGTATCAGACAAAATTGTTTTAGGAGGTCAGAGGGATGAGAAGAAATTAAGGATTGCTCCAACTATCTTATTGGATGTTCCACAAGAAGCTATGGTTATGCAAGAGGAGATATTTGGGCCAATTTTGCCAATTATTACTGTAGACAACATTGAAGATAGCTTTAGTATAATAAAATCAAGGCCAAAGCCTTTGGCTGCATATCTCTTCACAAACAATGAGCAACTGAAGAAGGATTATGTGGACAAGATATCTTCTGGAGGGATGCTCATCAACGACGCTGTCATACATGTTGCAACTCGTGGTTTGCCTTTTGGAGGAGTTGGAGAAAGTGGAATGGGTTGCTACCATGGAAAGTTCTCTTTTGATAGTTTCAGCCATAAGAAATCAGTTTTATATAAAACTTTTGATTCCGATCCATCCATAAGGTACCCTCCATATACACCTGAGAAGGAAAAAATTTTGAGGGCCATTTTTGGTGGCAATATTTTTCAGATAATTCTTGCTTTGCTTGGATGGTCTAAATGA

Protein sequence

>Msa0619390

MESKDMSRIVSPTQYARLVKLLNEDKVSDKIVLGGQRDEKKLRIAPTILLDVPQEAMVMQEEIFGPILPIITVDNIEDSFSIIKSRPKPLAAYLFTNNEQLKKDYVDKISSGGMLINDAVIHVATRGLPFGGVGESGMGCYHGKFSFDSFSHKKSVLYKTFDSDPSIRYPPYTPEKEKILRAIFGGNIFQIILALLGWSK*