Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790000 | XP_003591549.2 | 97.814 | 183 | 4 | 0 | 1 | 183 | 1 | 183 | 1.03e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790000 | sp|P0C8Z0|Y8359_ORYSI | 68.462 | 130 | 39 | 1 | 1 | 130 | 1 | 128 | 2.01e-61 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790000 | G7IF81 | 97.814 | 183 | 4 | 0 | 1 | 183 | 1 | 183 | 4.93e-127 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0692040 | Msa0790000 | -0.817555 | 3.103282e-52 | -8.615850e-47 |
| Msa0715700 | Msa0790000 | 0.801123 | 1.044538e-48 | -8.615850e-47 |
| Msa0771720 | Msa0790000 | 0.803845 | 2.870040e-49 | -8.615850e-47 |
| Msa0790000 | Msa0993290 | 0.811779 | 5.903586e-51 | -8.615850e-47 |
| Msa0790000 | Msa0993600 | 0.811823 | 5.774585e-51 | -8.615850e-47 |
| Msa0790000 | Msa1253020 | 0.804154 | 2.474798e-49 | -8.615850e-47 |
| Msa0790000 | Msa1293510 | 0.822705 | 2.053011e-53 | -8.615850e-47 |
| Msa0790000 | Msa1327550 | 0.805637 | 1.212568e-49 | -8.615850e-47 |
| Msa0790000 | Msa1370740 | 0.836190 | 1.081998e-56 | -8.615850e-47 |
| Msa0790000 | Msa1443780 | 0.820019 | 8.557915e-53 | -8.615850e-47 |
| Msa0790000 | Msa1451550 | 0.823611 | 1.261777e-53 | -8.615850e-47 |
| Msa0129060 | Msa0790000 | 0.810697 | 1.013135e-50 | -8.615850e-47 |
| Msa0334360 | Msa0790000 | 0.830140 | 3.471905e-55 | -8.615850e-47 |
| Msa0592440 | Msa0790000 | 0.802072 | 6.672464e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790000 | MtrunA17_Chr1g0195701 | 97.814 | 183 | 4 | 0 | 1 | 183 | 1 | 183 | 9.49e-131 | 363 |
| Msa0790000 | MtrunA17_Chr7g0269271 | 77.778 | 108 | 24 | 0 | 1 | 108 | 1 | 108 | 2.03e-59 | 185 |
| Msa0790000 | MtrunA17_Chr6g0465301 | 48.148 | 135 | 65 | 1 | 1 | 130 | 1 | 135 | 1.23e-40 | 135 |
| Msa0790000 | MtrunA17_Chr6g0460991 | 49.541 | 109 | 54 | 1 | 1 | 109 | 1 | 108 | 2.46e-34 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0790000 | AT4G02450.2 | 62.400 | 125 | 44 | 2 | 1 | 123 | 1 | 124 | 3.48e-53 | 170 |
| Msa0790000 | AT4G02450.1 | 62.400 | 125 | 44 | 2 | 1 | 123 | 1 | 124 | 3.59e-53 | 170 |
| Msa0790000 | AT3G03773.1 | 48.252 | 143 | 68 | 4 | 1 | 143 | 1 | 137 | 4.00e-38 | 128 |
| Msa0790000 | AT3G03773.3 | 52.586 | 116 | 53 | 2 | 1 | 116 | 1 | 114 | 5.83e-38 | 127 |
| Msa0790000 | AT3G03773.2 | 47.552 | 143 | 69 | 4 | 1 | 143 | 55 | 191 | 2.99e-36 | 125 |
Find 71 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGTTGATTGGGATAAA+TGG | 0.226101 | 5_3:-633420 | Msa0790000:CDS |
| GTATGCGTTGTACCTCGTTT+TGG | 0.292489 | 5_3:+634899 | None:intergenic |
| CATAATACAAGCTAATGTTT+AGG | 0.316115 | 5_3:+631877 | None:intergenic |
| TGAAGGAAAGACACGGTATC+TGG | 0.322168 | 5_3:-631791 | Msa0790000:three_prime_UTR |
| CACATTATGTGAAAGTTGAT+TGG | 0.336982 | 5_3:-633429 | Msa0790000:CDS |
| CTATGTCACGATTCAGTTGC+CGG | 0.340941 | 5_3:-633973 | Msa0790000:CDS |
| ATGTTAAACGAAGAACATTC+TGG | 0.361010 | 5_3:-634962 | None:intergenic |
| ATGTGCTTGAAGCAGCTTCC+TGG | 0.366179 | 5_3:+632025 | None:intergenic |
| ATAATACAAGCTAATGTTTA+GGG | 0.373227 | 5_3:+631878 | None:intergenic |
| TTGAGATGTTTATTTATTGA+AGG | 0.382394 | 5_3:-631808 | Msa0790000:three_prime_UTR |
| GGACGGTGCTCTTGCCAGCT+TGG | 0.394866 | 5_3:+632046 | None:intergenic |
| AGGTCTCGGTGACCTGGACT+TGG | 0.409814 | 5_3:-633283 | Msa0790000:CDS |
| CTTGGGAGGGATGGATTTCT+CGG | 0.410768 | 5_3:-633265 | Msa0790000:intron |
| AGTCTGACTGTAGTATCGTT+TGG | 0.426310 | 5_3:-631939 | Msa0790000:three_prime_UTR |
| ACATTATGTGAAAGTTGATT+GGG | 0.435304 | 5_3:-633428 | Msa0790000:CDS |
| CTTTGAGCCCACTTGACCTC+CGG | 0.445693 | 5_3:+634008 | None:intergenic |
| AGCTGGCAAGAGCACCGTCC+AGG | 0.453170 | 5_3:-632043 | Msa0790000:CDS |
| CATATTCTGTGTAGTGCAAA+AGG | 0.457512 | 5_3:-633500 | Msa0790000:CDS |
| TCAAAACACCGTCTGGAGTA+AGG | 0.459550 | 5_3:+633928 | None:intergenic |
| TTTATTAGGTCTCGGTGACC+TGG | 0.461080 | 5_3:-633289 | Msa0790000:intron |
| AAGAACATTCTGGAAACAAC+AGG | 0.465456 | 5_3:-634952 | Msa0790000:five_prime_UTR |
| GAAAGTTGATTGGGATAAAT+GGG | 0.470728 | 5_3:-633419 | Msa0790000:CDS |
| GCTTGAATGCAGTCGTCATC+CGG | 0.473159 | 5_3:-634027 | Msa0790000:intron |
| GTCGTCATCCGGAGGTCAAG+TGG | 0.482409 | 5_3:-634016 | Msa0790000:CDS |
| CCTTGTCGAAGAGTGGCAAC+TGG | 0.486019 | 5_3:+633862 | None:intergenic |
| TGACCTGGACTTGGGAGGGA+TGG | 0.491935 | 5_3:-633274 | Msa0790000:CDS |
| GGAGGTCAAGTGGGCTCAAA+GGG | 0.493027 | 5_3:-634006 | Msa0790000:CDS |
| TGCAAAAGGCAGAGGATGAA+TGG | 0.496195 | 5_3:-633486 | Msa0790000:CDS |
| ACTATCGTACTTCAACTTGA+AGG | 0.498116 | 5_3:+631837 | None:intergenic |
| ACAAGAGGGTAATGATAATG+AGG | 0.504951 | 5_3:-632088 | Msa0790000:CDS |
| GCCAGCTTGGTCTCCAACCG+TGG | 0.507840 | 5_3:+632059 | None:intergenic |
| CAGAGGATGAATGGTGGAAA+AGG | 0.507991 | 5_3:-633477 | Msa0790000:CDS |
| CAGTTTAAGATCTTATACTC+AGG | 0.510705 | 5_3:-631992 | Msa0790000:three_prime_UTR |
| AATCCATCCCTCCCAAGTCC+AGG | 0.516889 | 5_3:+633271 | None:intergenic |
| CTCGGTGACCTGGACTTGGG+AGG | 0.517191 | 5_3:-633279 | Msa0790000:CDS |
| CAATCAACTTTCACATAATG+TGG | 0.527025 | 5_3:+633430 | None:intergenic |
| TTTGACGACGGTGATGATGA+AGG | 0.527145 | 5_3:-633126 | Msa0790000:intron |
| CGGAGGTCAAGTGGGCTCAA+AGG | 0.538850 | 5_3:-634007 | Msa0790000:CDS |
| TCGGTGACCTGGACTTGGGA+GGG | 0.538949 | 5_3:-633278 | Msa0790000:CDS |
| AATGAGGGAGGTTCCACGGT+TGG | 0.540422 | 5_3:-632072 | Msa0790000:CDS |
| TCCACGGTTGGAGACCAAGC+TGG | 0.546944 | 5_3:-632060 | Msa0790000:CDS |
| AACGAGGTACAACGCATACA+AGG | 0.548721 | 5_3:-634895 | Msa0790000:five_prime_UTR |
| CTGTGTAGTGCAAAAGGCAG+AGG | 0.555658 | 5_3:-633494 | Msa0790000:CDS |
| TTTGTGCTGCAGCAATTTGA+GGG | 0.567193 | 5_3:-633171 | Msa0790000:intron |
| GGGTGATGATGCAGTGGGTG+CGG | 0.586506 | 5_3:-633151 | Msa0790000:CDS |
| GGTCTCGGTGACCTGGACTT+GGG | 0.589648 | 5_3:-633282 | Msa0790000:CDS |
| CATTAGCTTGTATTATGATG+AGG | 0.593709 | 5_3:-631871 | Msa0790000:three_prime_UTR |
| AAAAGGTTACTGAAAGCAGA+AGG | 0.595204 | 5_3:-633460 | Msa0790000:CDS |
| TGATAATGAGGGAGGTTCCA+CGG | 0.595705 | 5_3:-632076 | Msa0790000:CDS |
| TCGTCATCCGGAGGTCAAGT+GGG | 0.596383 | 5_3:-634015 | Msa0790000:CDS |
| CAAGAGGGTAATGATAATGA+GGG | 0.603330 | 5_3:-632087 | Msa0790000:CDS |
| CTTCGACAAGGTTAATGTAG+AGG | 0.606463 | 5_3:-633850 | Msa0790000:intron |
| ACATTAACCTTGTCGAAGAG+TGG | 0.607273 | 5_3:+633855 | None:intergenic |
| GTGGATGAAGATGAAGATGC+GGG | 0.610763 | 5_3:-633397 | Msa0790000:intron |
| CCAGTTGCCACTCTTCGACA+AGG | 0.617754 | 5_3:-633862 | Msa0790000:CDS |
| GTGGCAACTGGAGCTCATAG+AGG | 0.620616 | 5_3:+633874 | None:intergenic |
| GTGGTCTTCAGCACCAGCAG+TGG | 0.621573 | 5_3:+633896 | None:intergenic |
| CAGGAGAGCAAAATTAACGT+AGG | 0.633027 | 5_3:-633532 | Msa0790000:CDS |
| TCAACTTTCACATAATGTGG+AGG | 0.635270 | 5_3:+633433 | None:intergenic |
| GCTTGAAGCAGCTTCCTGGA+CGG | 0.652191 | 5_3:+632029 | None:intergenic |
| AAAGTGAACCTTACTCCAGA+CGG | 0.655853 | 5_3:-633936 | Msa0790000:CDS |
| GCAACTGGAGCTCATAGAGG+TGG | 0.662772 | 5_3:+633877 | None:intergenic |
| GGTGGATGAAGATGAAGATG+CGG | 0.663693 | 5_3:-633398 | Msa0790000:CDS |
| ATTTGAGGGTGATGATGCAG+TGG | 0.664488 | 5_3:-633157 | Msa0790000:CDS |
| AAAGGTTACTGAAAGCAGAA+GGG | 0.668010 | 5_3:-633459 | Msa0790000:CDS |
| TGAATGCAGTCGTCATCCGG+AGG | 0.670112 | 5_3:-634024 | Msa0790000:intron |
| AGTTGATTGGGATAAATGGG+TGG | 0.672477 | 5_3:-633416 | Msa0790000:CDS |
| GAGGGTAATGATAATGAGGG+AGG | 0.683148 | 5_3:-632084 | Msa0790000:CDS |
| TTTGAGGGTGATGATGCAGT+GGG | 0.686057 | 5_3:-633156 | Msa0790000:CDS |
| TATTTATTGAAGGAAAGACA+CGG | 0.700279 | 5_3:-631798 | Msa0790000:three_prime_UTR |
| AAAAGGCAGAGGATGAATGG+TGG | 0.737688 | 5_3:-633483 | Msa0790000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTGTTAAATTTATTT+TGG | - | chr5_3:632414-632433 | Msa0790000:intron | 10.0% |
| !!! | TTCATTTTTATGTTAAAATT+AGG | - | chr5_3:632558-632577 | Msa0790000:intron | 10.0% |
| !! | AATTTAACAAAAATGTTTCA+TGG | + | chr5_3:632409-632428 | None:intergenic | 15.0% |
| !! | TTTCTTTAATCTTAAACAAA+CGG | - | chr5_3:634327-634346 | Msa0790000:intron | 15.0% |
| !! | TGTGAATAGTTTAATTGAAA+TGG | - | chr5_3:632073-632092 | Msa0790000:CDS | 20.0% |
| !! | TAGATGGTTAATTCAATTTA+TGG | - | chr5_3:632232-632251 | Msa0790000:intron | 20.0% |
| !!! | TTTTATGTTAAAATTAGGCA+TGG | - | chr5_3:632563-632582 | Msa0790000:intron | 20.0% |
| !! | ACAGTTTATGATAAAAGATT+TGG | - | chr5_3:632612-632631 | Msa0790000:intron | 20.0% |
| !!! | TTTATGATAAAAGATTTGGT+GGG | - | chr5_3:632616-632635 | Msa0790000:intron | 20.0% |
| !! | TTAGAATGAATATGAAACTA+AGG | + | chr5_3:633008-633027 | None:intergenic | 20.0% |
| !!! | TGTAACTAATTTTCTTGTTA+AGG | - | chr5_3:633041-633060 | Msa0790000:intron | 20.0% |
| !!! | TTAGTTTTTCCAAGTTATAA+AGG | - | chr5_3:633354-633373 | Msa0790000:intron | 20.0% |
| !!! | TAGTTTTTCCAAGTTATAAA+GGG | - | chr5_3:633355-633374 | Msa0790000:intron | 20.0% |
| !! | TAAAAATACCCTTTATAACT+TGG | + | chr5_3:633366-633385 | None:intergenic | 20.0% |
| !!! | ATATCTAATGGTTTACTTTT+AGG | - | chr5_3:633825-633844 | Msa0790000:intron | 20.0% |
| !!! | TATCTAATGGTTTACTTTTA+GGG | - | chr5_3:633826-633845 | Msa0790000:intron | 20.0% |
| !! | CCAACAAGAATAAATTAATA+CGG | + | chr5_3:633865-633884 | None:intergenic | 20.0% |
| !! | ATAATACAAGCTAATGTTTA+GGG | + | chr5_3:634824-634843 | None:intergenic | 20.0% |
| !! | TTGAGATGTTTATTTATTGA+AGG | - | chr5_3:634891-634910 | Msa0790000:five_prime_UTR | 20.0% |
| !!! | ATCTGGATTTTCTATATTTT+TGG | - | chr5_3:634925-634944 | Msa0790000:five_prime_UTR | 20.0% |
| !! | TGAAAAATTGTAAAAGTGCA+GGG | + | chr5_3:631910-631929 | None:intergenic | 25.0% |
| !!! | TTAGGTGTTTTTGTTTCATA+TGG | - | chr5_3:631987-632006 | Msa0790000:three_prime_UTR | 25.0% |
| ! | CAATTAAACTATTCACAGTT+AGG | + | chr5_3:632070-632089 | None:intergenic | 25.0% |
| !!! | TATTTTAAACGTGATTAACC+AGG | + | chr5_3:632191-632210 | None:intergenic | 25.0% |
| ! | ACACTGAAAATTGTGAAATT+GGG | + | chr5_3:632298-632317 | None:intergenic | 25.0% |
| !!! | ATTTTCTAGTGTCTATTCAA+AGG | - | chr5_3:632452-632471 | Msa0790000:intron | 25.0% |
| ! | TCTCATTCAATTCATGTAAA+TGG | + | chr5_3:632480-632499 | None:intergenic | 25.0% |
| ! | ATGAATTGAATGAGAATTGA+TGG | - | chr5_3:632485-632504 | Msa0790000:intron | 25.0% |
| ! | GTTTATGATAAAAGATTTGG+TGG | - | chr5_3:632615-632634 | Msa0790000:intron | 25.0% |
| ! | GAGAAAACATTTCTAATTCA+TGG | - | chr5_3:632873-632892 | Msa0790000:intron | 25.0% |
| !! | TTTTCCAATGAGTTAAATCA+TGG | - | chr5_3:632938-632957 | Msa0790000:intron | 25.0% |
| !! | ACATTATGTGAAAGTTGATT+GGG | - | chr5_3:633271-633290 | Msa0790000:CDS | 25.0% |
| ! | CAAACAACATTAATAAGAGA+AGG | + | chr5_3:633496-633515 | None:intergenic | 25.0% |
| ! | TACTTGACTATTATAAAGCA+TGG | - | chr5_3:633649-633668 | Msa0790000:intron | 25.0% |
| ! | TTGCATTTGTAGATTACATT+GGG | - | chr5_3:633707-633726 | Msa0790000:intron | 25.0% |
| !!! | ATCTAATGGTTTACTTTTAG+GGG | - | chr5_3:633827-633846 | Msa0790000:intron | 25.0% |
| ! | CCGTATTAATTTATTCTTGT+TGG | - | chr5_3:633862-633881 | Msa0790000:CDS | 25.0% |
| ! | GAAAATTGAAATTGACTGTA+GGG | - | chr5_3:633936-633955 | Msa0790000:CDS | 25.0% |
| ! | AATAACTTAATCAGTTTCAC+TGG | + | chr5_3:634034-634053 | None:intergenic | 25.0% |
| !! | TCAATAATTCAGTGTTTTTC+TGG | - | chr5_3:634102-634121 | Msa0790000:intron | 25.0% |
| !!! | TGTCAATTTTAACTTTTGGA+TGG | + | chr5_3:634472-634491 | None:intergenic | 25.0% |
| !!! | GGAATGTCAATTTTAACTTT+TGG | + | chr5_3:634476-634495 | None:intergenic | 25.0% |
| ! | ATATGACAATTAAGTTCCTT+AGG | + | chr5_3:634530-634549 | None:intergenic | 25.0% |
| ! | GAACTTAATTGTCATATTGT+TGG | - | chr5_3:634533-634552 | Msa0790000:intron | 25.0% |
| ! | CATAATACAAGCTAATGTTT+AGG | + | chr5_3:634825-634844 | None:intergenic | 25.0% |
| ! | TATTTATTGAAGGAAAGACA+CGG | - | chr5_3:634901-634920 | Msa0790000:five_prime_UTR | 25.0% |
| CTTCTCTCAAACAAAAAATG+AGG | - | chr5_3:631860-631879 | Msa0790000:three_prime_UTR | 30.0% | |
| ! | CTGAAAAATTGTAAAAGTGC+AGG | + | chr5_3:631911-631930 | None:intergenic | 30.0% |
| ACTATTCACAGTTAGGATTT+AGG | + | chr5_3:632063-632082 | None:intergenic | 30.0% | |
| !!! | GTTTGTGTTTTAGCTACATT+GGG | - | chr5_3:632095-632114 | Msa0790000:CDS | 30.0% |
| !!! | TTTGTGTTTTAGCTACATTG+GGG | - | chr5_3:632096-632115 | Msa0790000:CDS | 30.0% |
| AATTAGTTCAGTTGAGTAGA+TGG | - | chr5_3:632216-632235 | Msa0790000:intron | 30.0% | |
| CACTGAAAATTGTGAAATTG+GGG | + | chr5_3:632297-632316 | None:intergenic | 30.0% | |
| CACACTGAAAATTGTGAAAT+TGG | + | chr5_3:632299-632318 | None:intergenic | 30.0% | |
| GTTAATTGCATGCATAATTG+TGG | + | chr5_3:632354-632373 | None:intergenic | 30.0% | |
| TATGTTAAAATTAGGCATGG+TGG | - | chr5_3:632566-632585 | Msa0790000:intron | 30.0% | |
| ATGTTAAAATTAGGCATGGT+GGG | - | chr5_3:632567-632586 | Msa0790000:intron | 30.0% | |
| TAGAAAATCAGATAGGAAAC+TGG | + | chr5_3:632650-632669 | None:intergenic | 30.0% | |
| CAAGCATTAGAAAATCAGAT+AGG | + | chr5_3:632657-632676 | None:intergenic | 30.0% | |
| !!! | ACTTTTGCATTTTTGGAATC+CGG | + | chr5_3:632748-632767 | None:intergenic | 30.0% |
| !! | AAGGTTCACTTTTGCATTTT+TGG | + | chr5_3:632755-632774 | None:intergenic | 30.0% |
| TTCTAATTCATGGATAGCAT+TGG | - | chr5_3:632883-632902 | Msa0790000:intron | 30.0% | |
| AATGCCATGATTTAACTCAT+TGG | + | chr5_3:632945-632964 | None:intergenic | 30.0% | |
| TAATACATGCATGCACTTAT+GGG | - | chr5_3:632968-632987 | Msa0790000:intron | 30.0% | |
| CAATCAACTTTCACATAATG+TGG | + | chr5_3:633272-633291 | None:intergenic | 30.0% | |
| ! | CACATTATGTGAAAGTTGAT+TGG | - | chr5_3:633270-633289 | Msa0790000:CDS | 30.0% |
| ! | TGAAAGTTGATTGGGATAAA+TGG | - | chr5_3:633279-633298 | Msa0790000:CDS | 30.0% |
| ! | GAAAGTTGATTGGGATAAAT+GGG | - | chr5_3:633280-633299 | Msa0790000:CDS | 30.0% |
| CAACTGATTGTCTGTTTATT+AGG | - | chr5_3:633396-633415 | Msa0790000:intron | 30.0% | |
| ATTGTCTGTTTATTAGGTCT+CGG | - | chr5_3:633402-633421 | Msa0790000:CDS | 30.0% | |
| CTGCAGCACAAAAATTAATT+AGG | + | chr5_3:633520-633539 | None:intergenic | 30.0% | |
| CTATTATAAAGCATGGTTGA+CGG | - | chr5_3:633656-633675 | Msa0790000:intron | 30.0% | |
| CTTGCATTTGTAGATTACAT+TGG | - | chr5_3:633706-633725 | Msa0790000:intron | 30.0% | |
| ! | ACTGCTATTTAAGATACTCT+TGG | - | chr5_3:633736-633755 | Msa0790000:intron | 30.0% |
| ! | CTGCTATTTAAGATACTCTT+GGG | - | chr5_3:633737-633756 | Msa0790000:intron | 30.0% |
| !! | TTTCATTTCAGTTGATGAGA+TGG | - | chr5_3:633896-633915 | Msa0790000:CDS | 30.0% |
| GGAAAATTGAAATTGACTGT+AGG | - | chr5_3:633935-633954 | Msa0790000:CDS | 30.0% | |
| !! | ATGTTTTAGGCTAAAGTTTG+TGG | - | chr5_3:633964-633983 | Msa0790000:CDS | 30.0% |
| TTAAAGCTATTCTATCACTC+AGG | + | chr5_3:634238-634257 | None:intergenic | 30.0% | |
| !! | GTGATAGAATAGCTTTAAAC+TGG | - | chr5_3:634240-634259 | Msa0790000:intron | 30.0% |
| ACTATGATCAAGATCAGATT+TGG | + | chr5_3:634270-634289 | None:intergenic | 30.0% | |
| TCAAAACCTGAAAAACAAGA+GGG | - | chr5_3:634597-634616 | Msa0790000:intron | 30.0% | |
| ! | CAGTTTAAGATCTTATACTC+AGG | - | chr5_3:634707-634726 | Msa0790000:intron | 30.0% |
| !! | CATTAGCTTGTATTATGATG+AGG | - | chr5_3:634828-634847 | Msa0790000:intron | 30.0% |
| ! | AAGAACATTCTGGAAACAAC+AGG | - | chr5_3:631747-631766 | Msa0790000:three_prime_UTR | 35.0% |
| TCATCAAAAATCCCAAAACG+AGG | - | chr5_3:631788-631807 | Msa0790000:three_prime_UTR | 35.0% | |
| GTTCGATGCTTAGTTGTATT+AGG | - | chr5_3:631969-631988 | Msa0790000:three_prime_UTR | 35.0% | |
| !! | GGTGTTTTTGTTTCATATGG+TGG | - | chr5_3:631990-632009 | Msa0790000:three_prime_UTR | 35.0% |
| !!! | GGTTTGTGTTTTAGCTACAT+TGG | - | chr5_3:632094-632113 | Msa0790000:CDS | 35.0% |
| !!! | TTGTGTTTTAGCTACATTGG+GGG | - | chr5_3:632097-632116 | Msa0790000:CDS | 35.0% |
| ! | GTTGGAGGTGTAGAAAAAAT+GGG | + | chr5_3:632167-632186 | None:intergenic | 35.0% |
| ! | TGTTGGAGGTGTAGAAAAAA+TGG | + | chr5_3:632168-632187 | None:intergenic | 35.0% |
| GGTTAACTCAGTTGAGTATA+TGG | + | chr5_3:632333-632352 | None:intergenic | 35.0% | |
| TGCAATTAACTACTTGTCGA+AGG | - | chr5_3:632364-632383 | Msa0790000:intron | 35.0% | |
| CTAATACATGCATGCACTTA+TGG | - | chr5_3:632967-632986 | Msa0790000:intron | 35.0% | |
| TCAATCTCTGCTATTGTTTC+AGG | - | chr5_3:633148-633167 | Msa0790000:CDS | 35.0% | |
| CATATTCTGTGTAGTGCAAA+AGG | - | chr5_3:633199-633218 | Msa0790000:intron | 35.0% | |
| AAAAGGTTACTGAAAGCAGA+AGG | - | chr5_3:633239-633258 | Msa0790000:intron | 35.0% | |
| AAAGGTTACTGAAAGCAGAA+GGG | - | chr5_3:633240-633259 | Msa0790000:intron | 35.0% | |
| TCAACTTTCACATAATGTGG+AGG | + | chr5_3:633269-633288 | None:intergenic | 35.0% | |
| CATTTGTAGATTACATTGGG+TGG | - | chr5_3:633710-633729 | Msa0790000:intron | 35.0% | |
| GGAAAACTTTCATCTTGCAT+TGG | - | chr5_3:633758-633777 | Msa0790000:intron | 35.0% | |
| !! | TTTCATCTTGCATTGGTTGA+TGG | - | chr5_3:633765-633784 | Msa0790000:intron | 35.0% |
| ! | AAAGTTTGTGGCTTTTCTAG+TGG | - | chr5_3:633976-633995 | Msa0790000:CDS | 35.0% |
| ! | TGATCAAGATCAGATTTGGT+GGG | + | chr5_3:634266-634285 | None:intergenic | 35.0% |
| ATGATCAAGATCAGATTTGG+TGG | + | chr5_3:634267-634286 | None:intergenic | 35.0% | |
| AAACGGTAATAGATGGTGAA+GGG | + | chr5_3:634354-634373 | None:intergenic | 35.0% | |
| TAAACGGTAATAGATGGTGA+AGG | + | chr5_3:634355-634374 | None:intergenic | 35.0% | |
| GTCACTTAAACGGTAATAGA+TGG | + | chr5_3:634361-634380 | None:intergenic | 35.0% | |
| AGTCGTAAGAGTCACTTAAA+CGG | + | chr5_3:634371-634390 | None:intergenic | 35.0% | |
| GTCAAAACCTGAAAAACAAG+AGG | - | chr5_3:634596-634615 | Msa0790000:intron | 35.0% | |
| !!! | TCATTACCCTCTTGTTTTTC+AGG | + | chr5_3:634606-634625 | None:intergenic | 35.0% |
| ! | ACAAGAGGGTAATGATAATG+AGG | - | chr5_3:634611-634630 | Msa0790000:intron | 35.0% |
| ! | CAAGAGGGTAATGATAATGA+GGG | - | chr5_3:634612-634631 | Msa0790000:intron | 35.0% |
| ACTATCGTACTTCAACTTGA+AGG | + | chr5_3:634865-634884 | None:intergenic | 35.0% | |
| ! | TATGCGTTGTACCTCGTTTT+GGG | + | chr5_3:631802-631821 | None:intergenic | 40.0% |
| AAACGTGATTAACCAGGTGT+TGG | + | chr5_3:632185-632204 | None:intergenic | 40.0% | |
| ! | TAACTACTTGTCGAAGGTGT+AGG | - | chr5_3:632370-632389 | Msa0790000:intron | 40.0% |
| CAGTGCTAATTGAACAGTCA+TGG | - | chr5_3:632509-632528 | Msa0790000:intron | 40.0% | |
| AAAGTGAACCTTACTCCAGA+CGG | - | chr5_3:632763-632782 | Msa0790000:intron | 40.0% | |
| GAAAAAGTCAAAACACCGTC+TGG | + | chr5_3:632781-632800 | None:intergenic | 40.0% | |
| ACATTAACCTTGTCGAAGAG+TGG | + | chr5_3:632847-632866 | None:intergenic | 40.0% | |
| CTTCGACAAGGTTAATGTAG+AGG | - | chr5_3:632849-632868 | Msa0790000:intron | 40.0% | |
| CAGGAGAGCAAAATTAACGT+AGG | - | chr5_3:633167-633186 | Msa0790000:intron | 40.0% | |
| AGTTGATTGGGATAAATGGG+TGG | - | chr5_3:633283-633302 | Msa0790000:CDS | 40.0% | |
| ! | TTTTGTGCTGCAGCAATTTG+AGG | - | chr5_3:633527-633546 | Msa0790000:CDS | 40.0% |
| TTTGTGCTGCAGCAATTTGA+GGG | - | chr5_3:633528-633547 | Msa0790000:CDS | 40.0% | |
| CTGGCTGACACTATATCTAA+TGG | - | chr5_3:633813-633832 | Msa0790000:intron | 40.0% | |
| !! | TCAGTTGATGAGATGGTCTT+TGG | - | chr5_3:633903-633922 | Msa0790000:CDS | 40.0% |
| GATGGTCTTTGGTAGACATT+TGG | - | chr5_3:633914-633933 | Msa0790000:CDS | 40.0% | |
| ! | CTGTAGGGCAACTATGTTTT+AGG | - | chr5_3:633951-633970 | Msa0790000:CDS | 40.0% |
| ATATCATATCTTACCCCACC+TGG | - | chr5_3:634173-634192 | Msa0790000:intron | 40.0% | |
| TATCACTCAGGAATCCAGAA+TGG | + | chr5_3:634226-634245 | None:intergenic | 40.0% | |
| ! | GAGGCACTATAAACAACAGT+AGG | + | chr5_3:634497-634516 | None:intergenic | 40.0% |
| AGTCTGACTGTAGTATCGTT+TGG | - | chr5_3:634760-634779 | Msa0790000:intron | 40.0% | |
| ! | GTATGCGTTGTACCTCGTTT+TGG | + | chr5_3:631803-631822 | None:intergenic | 45.0% |
| AACGAGGTACAACGCATACA+AGG | - | chr5_3:631804-631823 | Msa0790000:three_prime_UTR | 45.0% | |
| ! | TTTTCTACACCTCCAACACC+TGG | - | chr5_3:632170-632189 | Msa0790000:intron | 45.0% |
| ! | GTCGAAGGTGTAGGAAAAGT+TGG | - | chr5_3:632379-632398 | Msa0790000:intron | 45.0% |
| CTATGTCACGATTCAGTTGC+CGG | - | chr5_3:632726-632745 | Msa0790000:intron | 45.0% | |
| ! | TCAAAACACCGTCTGGAGTA+AGG | + | chr5_3:632774-632793 | None:intergenic | 45.0% |
| !! | TTGACTTTTTCTGCCACTGC+TGG | - | chr5_3:632790-632809 | Msa0790000:intron | 45.0% |
| TGCAAAAGGCAGAGGATGAA+TGG | - | chr5_3:633213-633232 | Msa0790000:intron | 45.0% | |
| AAAAGGCAGAGGATGAATGG+TGG | - | chr5_3:633216-633235 | Msa0790000:intron | 45.0% | |
| ! | CAGAGGATGAATGGTGGAAA+AGG | - | chr5_3:633222-633241 | Msa0790000:intron | 45.0% |
| GGTGGATGAAGATGAAGATG+CGG | - | chr5_3:633301-633320 | Msa0790000:intron | 45.0% | |
| GTGGATGAAGATGAAGATGC+GGG | - | chr5_3:633302-633321 | Msa0790000:intron | 45.0% | |
| TTTATTAGGTCTCGGTGACC+TGG | - | chr5_3:633410-633429 | Msa0790000:CDS | 45.0% | |
| ! | ATTTGAGGGTGATGATGCAG+TGG | - | chr5_3:633542-633561 | Msa0790000:intron | 45.0% |
| ! | TTTGAGGGTGATGATGCAGT+GGG | - | chr5_3:633543-633562 | Msa0790000:intron | 45.0% |
| ! | TTTGACGACGGTGATGATGA+AGG | - | chr5_3:633573-633592 | Msa0790000:intron | 45.0% |
| GACGGTACATGCATATGTTG+TGG | - | chr5_3:633674-633693 | Msa0790000:intron | 45.0% | |
| CCAGACACGAAAGATGAAAC+AGG | + | chr5_3:633797-633816 | None:intergenic | 45.0% | |
| CCTGTTTCATCTTTCGTGTC+TGG | - | chr5_3:633794-633813 | Msa0790000:intron | 45.0% | |
| CAGGTAATCAAACCTGCGTA+AGG | + | chr5_3:634139-634158 | None:intergenic | 45.0% | |
| CAGGTTTGATTACCTGCATG+AGG | - | chr5_3:634143-634162 | Msa0790000:intron | 45.0% | |
| AATCCAGAATGGTGCAACTG+GGG | + | chr5_3:634215-634234 | None:intergenic | 45.0% | |
| GAATCCAGAATGGTGCAACT+GGG | + | chr5_3:634216-634235 | None:intergenic | 45.0% | |
| TTCCTTAGGTCTACAGCTTG+AGG | + | chr5_3:634516-634535 | None:intergenic | 45.0% | |
| ! | GAGGGTAATGATAATGAGGG+AGG | - | chr5_3:634615-634634 | Msa0790000:intron | 45.0% |
| ! | TGATAATGAGGGAGGTTCCA+CGG | - | chr5_3:634623-634642 | Msa0790000:intron | 45.0% |
| TGAAGGAAAGACACGGTATC+TGG | - | chr5_3:634908-634927 | Msa0790000:five_prime_UTR | 45.0% | |
| !! | CGTGATTAACCAGGTGTTGG+AGG | + | chr5_3:632182-632201 | None:intergenic | 50.0% |
| GCTTGAATGCAGTCGTCATC+CGG | - | chr5_3:632672-632691 | Msa0790000:intron | 50.0% | |
| CTGTGTAGTGCAAAAGGCAG+AGG | - | chr5_3:633205-633224 | Msa0790000:intron | 50.0% | |
| ! | CTTGGGAGGGATGGATTTCT+CGG | - | chr5_3:633434-633453 | Msa0790000:CDS | 50.0% |
| !! | ACTTTTAGGGGCGTGTCTGT+AGG | - | chr5_3:633839-633858 | Msa0790000:intron | 50.0% |
| ! | GTGAACTAGTAGCCTTACGC+AGG | - | chr5_3:634124-634143 | Msa0790000:intron | 50.0% |
| GATATCAAGCAGCCTCATGC+AGG | + | chr5_3:634158-634177 | None:intergenic | 50.0% | |
| CATATCTTACCCCACCTGGA+TGG | - | chr5_3:634177-634196 | Msa0790000:intron | 50.0% | |
| ATCCAGAATGGTGCAACTGG+GGG | + | chr5_3:634214-634233 | None:intergenic | 50.0% | |
| GGAATCCAGAATGGTGCAAC+TGG | + | chr5_3:634217-634236 | None:intergenic | 50.0% | |
| TGCCTCAAGCTGTAGACCTA+AGG | - | chr5_3:634511-634530 | Msa0790000:intron | 50.0% | |
| ATGTGCTTGAAGCAGCTTCC+TGG | + | chr5_3:634677-634696 | None:intergenic | 50.0% | |
| TGAATGCAGTCGTCATCCGG+AGG | - | chr5_3:632675-632694 | Msa0790000:intron | 55.0% | |
| TCGTCATCCGGAGGTCAAGT+GGG | - | chr5_3:632684-632703 | Msa0790000:intron | 55.0% | |
| CTTTGAGCCCACTTGACCTC+CGG | + | chr5_3:632694-632713 | None:intergenic | 55.0% | |
| ! | GGAGGTCAAGTGGGCTCAAA+GGG | - | chr5_3:632693-632712 | Msa0790000:intron | 55.0% |
| GCAACTGGAGCTCATAGAGG+TGG | + | chr5_3:632825-632844 | None:intergenic | 55.0% | |
| GTGGCAACTGGAGCTCATAG+AGG | + | chr5_3:632828-632847 | None:intergenic | 55.0% | |
| CCTTGTCGAAGAGTGGCAAC+TGG | + | chr5_3:632840-632859 | None:intergenic | 55.0% | |
| CCAGTTGCCACTCTTCGACA+AGG | - | chr5_3:632837-632856 | Msa0790000:intron | 55.0% | |
| AATCCATCCCTCCCAAGTCC+AGG | + | chr5_3:633431-633450 | None:intergenic | 55.0% | |
| !! | GTGGGTGCGGATTTTGACGA+CGG | - | chr5_3:633561-633580 | Msa0790000:intron | 55.0% |
| AACACGGTAGCCATCCAGGT+GGG | + | chr5_3:634190-634209 | None:intergenic | 55.0% | |
| TAACACGGTAGCCATCCAGG+TGG | + | chr5_3:634191-634210 | None:intergenic | 55.0% | |
| TGGTGCAACTGGGGGTAACA+CGG | + | chr5_3:634206-634225 | None:intergenic | 55.0% | |
| TACCCCCAGTTGCACCATTC+TGG | - | chr5_3:634209-634228 | Msa0790000:intron | 55.0% | |
| AATGAGGGAGGTTCCACGGT+TGG | - | chr5_3:634627-634646 | Msa0790000:intron | 55.0% | |
| GCTTGAAGCAGCTTCCTGGA+CGG | + | chr5_3:634673-634692 | None:intergenic | 55.0% | |
| GTCGTCATCCGGAGGTCAAG+TGG | - | chr5_3:632683-632702 | Msa0790000:intron | 60.0% | |
| ! | CGGAGGTCAAGTGGGCTCAA+AGG | - | chr5_3:632692-632711 | Msa0790000:intron | 60.0% |
| GTGGTCTTCAGCACCAGCAG+TGG | + | chr5_3:632806-632825 | None:intergenic | 60.0% | |
| AGGTCTCGGTGACCTGGACT+TGG | - | chr5_3:633416-633435 | Msa0790000:CDS | 60.0% | |
| GGTCTCGGTGACCTGGACTT+GGG | - | chr5_3:633417-633436 | Msa0790000:CDS | 60.0% | |
| TCGGTGACCTGGACTTGGGA+GGG | - | chr5_3:633421-633440 | Msa0790000:CDS | 60.0% | |
| TGACCTGGACTTGGGAGGGA+TGG | - | chr5_3:633425-633444 | Msa0790000:CDS | 60.0% | |
| ! | GGGTGATGATGCAGTGGGTG+CGG | - | chr5_3:633548-633567 | Msa0790000:intron | 60.0% |
| ACACGGTAGCCATCCAGGTG+GGG | + | chr5_3:634189-634208 | None:intergenic | 60.0% | |
| GGGTAACACGGTAGCCATCC+AGG | + | chr5_3:634194-634213 | None:intergenic | 60.0% | |
| TCCACGGTTGGAGACCAAGC+TGG | - | chr5_3:634639-634658 | Msa0790000:intron | 60.0% | |
| CTCGGTGACCTGGACTTGGG+AGG | - | chr5_3:633420-633439 | Msa0790000:CDS | 65.0% | |
| GCCAGCTTGGTCTCCAACCG+TGG | + | chr5_3:634643-634662 | None:intergenic | 65.0% | |
| GGACGGTGCTCTTGCCAGCT+TGG | + | chr5_3:634656-634675 | None:intergenic | 65.0% | |
| !! | AGCTGGCAAGAGCACCGTCC+AGG | - | chr5_3:634656-634675 | Msa0790000:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 631746 | 634975 | 631746 | ID=Msa0790000;Name=Msa0790000 |
| chr5_3 | mRNA | 631746 | 634975 | 631746 | ID=Msa0790000-mRNA-1;Parent=Msa0790000;Name=Msa0790000-mRNA-1;_AED=0.09;_eAED=0.09;_QI=131|1|1|1|1|1|6|277|183 |
| chr5_3 | exon | 631746 | 632135 | 631746 | ID=Msa0790000-mRNA-1:exon:246;Parent=Msa0790000-mRNA-1 |
| chr5_3 | exon | 633127 | 633181 | 633127 | ID=Msa0790000-mRNA-1:exon:245;Parent=Msa0790000-mRNA-1 |
| chr5_3 | exon | 633266 | 633303 | 633266 | ID=Msa0790000-mRNA-1:exon:244;Parent=Msa0790000-mRNA-1 |
| chr5_3 | exon | 633398 | 633551 | 633398 | ID=Msa0790000-mRNA-1:exon:243;Parent=Msa0790000-mRNA-1 |
| chr5_3 | exon | 633851 | 634037 | 633851 | ID=Msa0790000-mRNA-1:exon:242;Parent=Msa0790000-mRNA-1 |
| chr5_3 | exon | 634840 | 634975 | 634840 | ID=Msa0790000-mRNA-1:exon:241;Parent=Msa0790000-mRNA-1 |
| chr5_3 | five_prime_UTR | 634845 | 634975 | 634845 | ID=Msa0790000-mRNA-1:five_prime_utr;Parent=Msa0790000-mRNA-1 |
| chr5_3 | CDS | 634840 | 634844 | 634840 | ID=Msa0790000-mRNA-1:cds;Parent=Msa0790000-mRNA-1 |
| chr5_3 | CDS | 633851 | 634037 | 633851 | ID=Msa0790000-mRNA-1:cds;Parent=Msa0790000-mRNA-1 |
| chr5_3 | CDS | 633398 | 633551 | 633398 | ID=Msa0790000-mRNA-1:cds;Parent=Msa0790000-mRNA-1 |
| chr5_3 | CDS | 633266 | 633303 | 633266 | ID=Msa0790000-mRNA-1:cds;Parent=Msa0790000-mRNA-1 |
| chr5_3 | CDS | 633127 | 633181 | 633127 | ID=Msa0790000-mRNA-1:cds;Parent=Msa0790000-mRNA-1 |
| chr5_3 | CDS | 632023 | 632135 | 632023 | ID=Msa0790000-mRNA-1:cds;Parent=Msa0790000-mRNA-1 |
| chr5_3 | three_prime_UTR | 631746 | 632022 | 631746 | ID=Msa0790000-mRNA-1:three_prime_utr;Parent=Msa0790000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
