AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1293510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1293510 MtrunA17_Chr8g0360291 97.674 129 3 0 1 129 1 129 2.65e-91 259
Msa1293510 MtrunA17_Chr2g0316921 70.312 128 38 0 1 128 1 128 3.46e-63 189
Msa1293510 MtrunA17_Chr4g0046851 57.812 128 52 1 1 128 1 126 3.99e-49 153
Msa1293510 MtrunA17_Chr3g0113291 52.344 128 61 0 1 128 24 151 2.81e-46 147
Msa1293510 MtrunA17_Chr7g0242231 57.273 110 47 0 1 110 1 110 1.75e-44 141
Msa1293510 MtrunA17_Chr5g0436971 59.091 110 45 0 1 110 1 110 4.62e-44 140
Msa1293510 MtrunA17_Chr2g0316891 69.412 85 26 0 44 128 42 126 1.24e-38 126
Msa1293510 MtrunA17_Chr1g0188931 45.361 97 53 0 12 108 8 104 1.09e-31 108
Msa1293510 MtrunA17_Chr3g0127211 47.423 97 51 0 12 108 8 104 1.98e-31 107
Msa1293510 MtrunA17_Chr8g0346501 42.857 98 56 0 9 106 5 102 1.71e-26 95.1
Msa1293510 MtrunA17_Chr1g0188951 42.623 61 35 0 48 108 1 61 4.23e-15 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1293510 AT5G53940.1 69.531 128 39 0 1 128 1 128 5.33e-62 186
Msa1293510 AT2G40110.1 55.814 129 56 1 1 128 1 129 2.01e-47 149
Msa1293510 AT3G08990.2 51.562 128 62 0 1 128 1 128 5.16e-47 148
Msa1293510 AT3G08990.1 51.562 128 62 0 1 128 1 128 5.16e-47 148
Msa1293510 AT3G08990.3 51.562 128 62 0 1 128 1 128 5.16e-47 148
Msa1293510 AT2G40110.2 64.706 102 36 0 1 102 1 102 1.48e-46 146
Msa1293510 AT3G55890.4 58.095 105 44 0 1 105 1 105 6.50e-42 135
Msa1293510 AT3G55890.1 58.095 105 44 0 1 105 1 105 6.50e-42 135
Msa1293510 AT3G11230.1 50.781 128 63 0 1 128 1 128 2.08e-41 134
Msa1293510 AT3G55890.3 59.406 101 41 0 1 101 1 101 2.28e-41 133
Msa1293510 AT3G55890.2 59.406 101 41 0 1 101 1 101 2.28e-41 133
Msa1293510 AT3G11230.2 50.781 128 63 0 1 128 34 161 7.89e-41 134
Msa1293510 AT3G11230.4 57.843 102 43 0 1 102 1 102 1.29e-39 129
Msa1293510 AT3G11230.3 57.843 102 43 0 1 102 34 135 2.88e-39 129
Msa1293510 AT2G40110.4 61.446 83 32 0 1 83 1 83 1.94e-35 117
Msa1293510 AT2G40110.3 61.446 83 32 0 1 83 1 83 1.94e-35 117
Msa1293510 AT4G27745.2 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1293510 AT4G27745.3 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1293510 AT4G27745.1 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1293510 AT4G27745.4 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1293510 AT4G27740.1 39.130 92 56 0 14 105 10 101 6.48e-23 86.7

Find 42 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAAAGAGCGATGCTTTC+AGG 0.190195 8_3:-50688997 Msa1293510:CDS
ACTTTCCCTCTTTGTACTTT+TGG 0.194241 8_3:+50688762 None:intergenic
CTCATAGATGGCTAAGGATA+TGG 0.296863 8_3:-50688336 Msa1293510:three_prime_UTR
ACTTCCTCAAGATTCATAAA+AGG 0.314442 8_3:+50690280 None:intergenic
GAGCTGGATGGCAGAGTTTA+CGG 0.331875 8_3:-50690204 Msa1293510:CDS
TGTCGCTGCGGTCAGATAAT+TGG 0.336845 8_3:-50688946 Msa1293510:CDS
AATGAAATAGCAAAACAAAT+TGG 0.357882 8_3:+50688448 None:intergenic
TCCACTGAATTATGTGTTGA+GGG 0.392825 8_3:-50688604 Msa1293510:CDS
GAGTGATACTGAAGATGATT+AGG 0.429995 8_3:-50688569 Msa1293510:exon
GGAAGGATCGTTGATGAAAT+CGG 0.431542 8_3:-50688631 Msa1293510:CDS
GAGCGGTGACATCAATCAAA+TGG 0.436224 8_3:-50690244 Msa1293510:exon
ACCGCCAGTTTCCTCATAGA+TGG 0.443843 8_3:-50688348 Msa1293510:three_prime_UTR
TTAGCCATCTATGAGGAAAC+TGG 0.448525 8_3:+50688344 None:intergenic
CTCCACTGAATTATGTGTTG+AGG 0.454787 8_3:-50688605 Msa1293510:CDS
ATACTTACACATTATTGAAA+AGG 0.455887 8_3:+50690002 None:intergenic
TTTCCACTGATCTCATCTCC+AGG 0.460967 8_3:-50690152 Msa1293510:CDS
GAAAAGCCAAAAGTACAAAG+AGG 0.465104 8_3:-50688768 Msa1293510:CDS
AGGGAAAGTTTGTTCTTGAA+AGG 0.474035 8_3:-50688748 Msa1293510:intron
TGGAAAGAGCGATGCTTTCA+GGG 0.476055 8_3:-50688996 Msa1293510:CDS
AGCGGTGACATCAATCAAAT+GGG 0.480919 8_3:-50690243 Msa1293510:exon
AGATTAAGATGAACCAGGGC+AGG 0.485254 8_3:+50690316 None:intergenic
TGTGTAATTCGTGTATCAAA+AGG 0.485848 8_3:-50688378 Msa1293510:three_prime_UTR
AATAGTAATACTCCCTGCCC+TGG 0.535884 8_3:-50690329 Msa1293510:five_prime_UTR
AAGTGAAGAAGAAGAGTGAG+CGG 0.553078 8_3:-50690261 Msa1293510:five_prime_UTR
ATTCGTGTATCAAAAGGAGA+TGG 0.569514 8_3:-50688372 Msa1293510:three_prime_UTR
AAAAGCCAAAAGTACAAAGA+GGG 0.574439 8_3:-50688767 Msa1293510:CDS
TTCCACTGATCTCATCTCCA+GGG 0.580481 8_3:-50690151 Msa1293510:intron
GCTGCGGTCAGATAATTGGC+TGG 0.590004 8_3:-50688942 Msa1293510:CDS
CACAGTGTGAACTTCACTAG+TGG 0.591434 8_3:-50689027 Msa1293510:intron
GATTAAGATGAACCAGGGCA+GGG 0.595551 8_3:+50690317 None:intergenic
CTTCACTAGTGGAGAAGTGG+TGG 0.595583 8_3:-50689016 Msa1293510:CDS
GAAAGAGATTAAGATGAACC+AGG 0.595956 8_3:+50690311 None:intergenic
TCTCTCATAGGAAACTGTGC+AGG 0.598241 8_3:-50688792 Msa1293510:intron
AGTTTCCTCATAGATGGCTA+AGG 0.601151 8_3:-50688342 Msa1293510:three_prime_UTR
TGAGATCAGTGGAAAGAGCA+AGG 0.604806 8_3:+50690160 None:intergenic
CATATCCTTAGCCATCTATG+AGG 0.622869 8_3:+50688337 None:intergenic
GCCCTCAACACATAATTCAG+TGG 0.637258 8_3:+50688603 None:intergenic
AAAGAGATTAAGATGAACCA+GGG 0.646469 8_3:+50690312 None:intergenic
TACCCTGGAGATGAGATCAG+TGG 0.648534 8_3:+50690149 None:intergenic
GAACTTCACTAGTGGAGAAG+TGG 0.657506 8_3:-50689019 Msa1293510:CDS
GCCATCTATGAGGAAACTGG+CGG 0.672225 8_3:+50688347 None:intergenic
GCGGTGACATCAATCAAATG+GGG 0.714397 8_3:-50690242 Msa1293510:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCAATTTTTTTGGTTAATT+AGG - chr8_3:50688360-50688379 Msa1293510:three_prime_UTR 15.0%
!! AGTAATATAATATATTAGGT+GGG + chr8_3:50688719-50688738 None:intergenic 15.0%
!! AAGTAATATAATATATTAGG+TGG + chr8_3:50688720-50688739 None:intergenic 15.0%
!! GTGAAGTAATATAATATATT+AGG + chr8_3:50688723-50688742 None:intergenic 15.0%
!! TAAAAAATAATTTGAAAAGC+TGG + chr8_3:50688858-50688877 None:intergenic 15.0%
!! ATACAATCTAATTCTAATAT+CGG + chr8_3:50689335-50689354 None:intergenic 15.0%
!!! CAAATACAAAAGATTTTAAT+AGG + chr8_3:50689924-50689943 None:intergenic 15.0%
!!! TTAAAATCTTTTGTATTTGT+TGG - chr8_3:50689925-50689944 Msa1293510:intron 15.0%
!!! TTCAATTTTTTTGGTTAATT+AGG - chr8_3:50688360-50688379 Msa1293510:three_prime_UTR 15.0%
!! AGTAATATAATATATTAGGT+GGG + chr8_3:50688719-50688738 None:intergenic 15.0%
!! AAGTAATATAATATATTAGG+TGG + chr8_3:50688720-50688739 None:intergenic 15.0%
!! GTGAAGTAATATAATATATT+AGG + chr8_3:50688723-50688742 None:intergenic 15.0%
!! TAAAAAATAATTTGAAAAGC+TGG + chr8_3:50688858-50688877 None:intergenic 15.0%
!! ATACAATCTAATTCTAATAT+CGG + chr8_3:50689335-50689354 None:intergenic 15.0%
!!! CAAATACAAAAGATTTTAAT+AGG + chr8_3:50689924-50689943 None:intergenic 15.0%
!!! TTAAAATCTTTTGTATTTGT+TGG - chr8_3:50689925-50689944 Msa1293510:intron 15.0%
!! TTAACCAAAAAAATTGAAGA+AGG + chr8_3:50688358-50688377 None:intergenic 20.0%
!! ATACTTACACATTATTGAAA+AGG + chr8_3:50688468-50688487 None:intergenic 20.0%
!!! GACAGTTTTATTATCAATAA+TGG - chr8_3:50688555-50688574 Msa1293510:exon 20.0%
!! TCAATAATGGTATTATAGTA+AGG - chr8_3:50688568-50688587 Msa1293510:exon 20.0%
!!! AATGCAATTTTATTTTCAAC+TGG + chr8_3:50688624-50688643 None:intergenic 20.0%
!! AAAAATGAAAGATGATAGAA+TGG - chr8_3:50688905-50688924 Msa1293510:intron 20.0%
!! AAAATGAAAGATGATAGAAT+GGG - chr8_3:50688906-50688925 Msa1293510:intron 20.0%
!! AATTGTATGTTAAGTTATAC+TGG - chr8_3:50689129-50689148 Msa1293510:intron 20.0%
!! ATTGTATGTTAAGTTATACT+GGG - chr8_3:50689130-50689149 Msa1293510:intron 20.0%
!! AATGAAATAGCAAAACAAAT+TGG + chr8_3:50690022-50690041 None:intergenic 20.0%
!! TTAACCAAAAAAATTGAAGA+AGG + chr8_3:50688358-50688377 None:intergenic 20.0%
!! ATACTTACACATTATTGAAA+AGG + chr8_3:50688468-50688487 None:intergenic 20.0%
!!! GACAGTTTTATTATCAATAA+TGG - chr8_3:50688555-50688574 Msa1293510:exon 20.0%
!! TCAATAATGGTATTATAGTA+AGG - chr8_3:50688568-50688587 Msa1293510:exon 20.0%
!!! AATGCAATTTTATTTTCAAC+TGG + chr8_3:50688624-50688643 None:intergenic 20.0%
!! AAAAATGAAAGATGATAGAA+TGG - chr8_3:50688905-50688924 Msa1293510:intron 20.0%
!! AAAATGAAAGATGATAGAAT+GGG - chr8_3:50688906-50688925 Msa1293510:intron 20.0%
!! AATTGTATGTTAAGTTATAC+TGG - chr8_3:50689129-50689148 Msa1293510:intron 20.0%
!! ATTGTATGTTAAGTTATACT+GGG - chr8_3:50689130-50689149 Msa1293510:intron 20.0%
!! AATGAAATAGCAAAACAAAT+TGG + chr8_3:50690022-50690041 None:intergenic 20.0%
!!! TGATCCTTCTTCAATTTTTT+TGG - chr8_3:50688351-50688370 Msa1293510:three_prime_UTR 25.0%
! AGAAGAAAAGCAAACAATAA+GGG + chr8_3:50688413-50688432 None:intergenic 25.0%
!!! CATTTAAGATTTGTTACTGA+TGG + chr8_3:50688518-50688537 None:intergenic 25.0%
! GAGTATATAATGAAACTAGT+GGG + chr8_3:50688821-50688840 None:intergenic 25.0%
! AGAGTATATAATGAAACTAG+TGG + chr8_3:50688822-50688841 None:intergenic 25.0%
! TTAGAAACAAGCATAAACAT+CGG + chr8_3:50689055-50689074 None:intergenic 25.0%
! GATAAGTATTTCAACATTCA+GGG + chr8_3:50689255-50689274 None:intergenic 25.0%
! AGATAAGTATTTCAACATTC+AGG + chr8_3:50689256-50689275 None:intergenic 25.0%
! TTTGTAAAAATAAGAGAGGA+TGG + chr8_3:50689569-50689588 None:intergenic 25.0%
!! TCGATTTGTAAAAATAAGAG+AGG + chr8_3:50689573-50689592 None:intergenic 25.0%
! ATCAGTAAAAACACACATTA+AGG + chr8_3:50689786-50689805 None:intergenic 25.0%
!!! ATCTTTTGTATTTGTTGGAT+CGG - chr8_3:50689930-50689949 Msa1293510:intron 25.0%
!!! TCATGGAAGTATTTTAACAA+CGG + chr8_3:50690159-50690178 None:intergenic 25.0%
!!! TGATCCTTCTTCAATTTTTT+TGG - chr8_3:50688351-50688370 Msa1293510:three_prime_UTR 25.0%
! AGAAGAAAAGCAAACAATAA+GGG + chr8_3:50688413-50688432 None:intergenic 25.0%
!!! CATTTAAGATTTGTTACTGA+TGG + chr8_3:50688518-50688537 None:intergenic 25.0%
! GAGTATATAATGAAACTAGT+GGG + chr8_3:50688821-50688840 None:intergenic 25.0%
! AGAGTATATAATGAAACTAG+TGG + chr8_3:50688822-50688841 None:intergenic 25.0%
! TTAGAAACAAGCATAAACAT+CGG + chr8_3:50689055-50689074 None:intergenic 25.0%
! GATAAGTATTTCAACATTCA+GGG + chr8_3:50689255-50689274 None:intergenic 25.0%
! AGATAAGTATTTCAACATTC+AGG + chr8_3:50689256-50689275 None:intergenic 25.0%
! TTTGTAAAAATAAGAGAGGA+TGG + chr8_3:50689569-50689588 None:intergenic 25.0%
!! TCGATTTGTAAAAATAAGAG+AGG + chr8_3:50689573-50689592 None:intergenic 25.0%
! ATCAGTAAAAACACACATTA+AGG + chr8_3:50689786-50689805 None:intergenic 25.0%
!!! ATCTTTTGTATTTGTTGGAT+CGG - chr8_3:50689930-50689949 Msa1293510:intron 25.0%
!!! TCATGGAAGTATTTTAACAA+CGG + chr8_3:50690159-50690178 None:intergenic 25.0%
AAAGAGATTAAGATGAACCA+GGG + chr8_3:50688158-50688177 None:intergenic 30.0%
! TGTACCTTTTATGAATCTTG+AGG - chr8_3:50688183-50688202 Msa1293510:intron 30.0%
ACTTCCTCAAGATTCATAAA+AGG + chr8_3:50688190-50688209 None:intergenic 30.0%
GATCATGATATATAATACCC+TGG + chr8_3:50688336-50688355 None:intergenic 30.0%
AAACAATAAGGGTTAACGAA+TGG + chr8_3:50688402-50688421 None:intergenic 30.0%
GAGAAGAAAAGCAAACAATA+AGG + chr8_3:50688414-50688433 None:intergenic 30.0%
!! TATTGTTTGCTTTTCTTCTC+AGG - chr8_3:50688414-50688433 Msa1293510:three_prime_UTR 30.0%
!! ATTGTTTGCTTTTCTTCTCA+GGG - chr8_3:50688415-50688434 Msa1293510:three_prime_UTR 30.0%
TCCATTTATACCACCAAAAT+GGG + chr8_3:50688695-50688714 None:intergenic 30.0%
ATCCATTTATACCACCAAAA+TGG + chr8_3:50688696-50688715 None:intergenic 30.0%
AAACCAATAACACTTTGTCA+GGG + chr8_3:50689008-50689027 None:intergenic 30.0%
AAAACCAATAACACTTTGTC+AGG + chr8_3:50689009-50689028 None:intergenic 30.0%
!!! TGACAAAGTGTTATTGGTTT+TGG - chr8_3:50689008-50689027 Msa1293510:CDS 30.0%
! TTTAGAAGGATCAAAAGTAC+TGG + chr8_3:50689647-50689666 None:intergenic 30.0%
TAAAATTGCATCTCTCTCAT+AGG - chr8_3:50689663-50689682 Msa1293510:intron 30.0%
! AAAAGCCAAAAGTACAAAGA+GGG - chr8_3:50689700-50689719 Msa1293510:intron 30.0%
!! TCTTTTGTATTTGTTGGATC+GGG - chr8_3:50689931-50689950 Msa1293510:intron 30.0%
! TCTGATTCTGAACATTTTCA+AGG + chr8_3:50689998-50690017 None:intergenic 30.0%
TGTGTAATTCGTGTATCAAA+AGG - chr8_3:50690089-50690108 Msa1293510:intron 30.0%
AAAGAGATTAAGATGAACCA+GGG + chr8_3:50688158-50688177 None:intergenic 30.0%
! TGTACCTTTTATGAATCTTG+AGG - chr8_3:50688183-50688202 Msa1293510:intron 30.0%
ACTTCCTCAAGATTCATAAA+AGG + chr8_3:50688190-50688209 None:intergenic 30.0%
GATCATGATATATAATACCC+TGG + chr8_3:50688336-50688355 None:intergenic 30.0%
AAACAATAAGGGTTAACGAA+TGG + chr8_3:50688402-50688421 None:intergenic 30.0%
GAGAAGAAAAGCAAACAATA+AGG + chr8_3:50688414-50688433 None:intergenic 30.0%
!! TATTGTTTGCTTTTCTTCTC+AGG - chr8_3:50688414-50688433 Msa1293510:three_prime_UTR 30.0%
!! ATTGTTTGCTTTTCTTCTCA+GGG - chr8_3:50688415-50688434 Msa1293510:three_prime_UTR 30.0%
TCCATTTATACCACCAAAAT+GGG + chr8_3:50688695-50688714 None:intergenic 30.0%
ATCCATTTATACCACCAAAA+TGG + chr8_3:50688696-50688715 None:intergenic 30.0%
AAACCAATAACACTTTGTCA+GGG + chr8_3:50689008-50689027 None:intergenic 30.0%
AAAACCAATAACACTTTGTC+AGG + chr8_3:50689009-50689028 None:intergenic 30.0%
!!! TGACAAAGTGTTATTGGTTT+TGG - chr8_3:50689008-50689027 Msa1293510:CDS 30.0%
! TTTAGAAGGATCAAAAGTAC+TGG + chr8_3:50689647-50689666 None:intergenic 30.0%
TAAAATTGCATCTCTCTCAT+AGG - chr8_3:50689663-50689682 Msa1293510:intron 30.0%
! AAAAGCCAAAAGTACAAAGA+GGG - chr8_3:50689700-50689719 Msa1293510:intron 30.0%
!! TCTTTTGTATTTGTTGGATC+GGG - chr8_3:50689931-50689950 Msa1293510:intron 30.0%
! TCTGATTCTGAACATTTTCA+AGG + chr8_3:50689998-50690017 None:intergenic 30.0%
TGTGTAATTCGTGTATCAAA+AGG - chr8_3:50690089-50690108 Msa1293510:intron 30.0%
GAAAGAGATTAAGATGAACC+AGG + chr8_3:50688159-50688178 None:intergenic 35.0%
! CAGGGATTTTATTGTCATAG+AGG - chr8_3:50688433-50688452 Msa1293510:three_prime_UTR 35.0%
ATTTATACCACCAAAATGGG+TGG + chr8_3:50688692-50688711 None:intergenic 35.0%
!! ACCCATTTTGGTGGTATAAA+TGG - chr8_3:50688691-50688710 Msa1293510:intron 35.0%
!!! ACTTTAGAGTTTTTGGTGAG+TGG + chr8_3:50688794-50688813 None:intergenic 35.0%
!! CTCACCAAAAACTCTAAAGT+TGG - chr8_3:50688794-50688813 Msa1293510:intron 35.0%
CTCAACAAATTGAAATGCCT+CGG + chr8_3:50689098-50689117 None:intergenic 35.0%
TATACTGGGATTGTTGTAAC+CGG - chr8_3:50689144-50689163 Msa1293510:intron 35.0%
! TGTCAGTTTTCATGGTTGAA+TGG - chr8_3:50689173-50689192 Msa1293510:intron 35.0%
! AGTTTTCATGGTTGAATGGT+GGG - chr8_3:50689177-50689196 Msa1293510:intron 35.0%
!! GATATATTTTGTTGTCGCTG+CGG - chr8_3:50689509-50689528 Msa1293510:intron 35.0%
GTAAAAATAAGAGAGGATGG+TGG + chr8_3:50689566-50689585 None:intergenic 35.0%
! GAGAGAGATGCAATTTTAGA+AGG + chr8_3:50689661-50689680 None:intergenic 35.0%
! GAAAAGCCAAAAGTACAAAG+AGG - chr8_3:50689699-50689718 Msa1293510:intron 35.0%
! ACTTTCCCTCTTTGTACTTT+TGG + chr8_3:50689708-50689727 None:intergenic 35.0%
! AGGGAAAGTTTGTTCTTGAA+AGG - chr8_3:50689719-50689738 Msa1293510:intron 35.0%
TCCACTGAATTATGTGTTGA+GGG - chr8_3:50689863-50689882 Msa1293510:intron 35.0%
GAGTGATACTGAAGATGATT+AGG - chr8_3:50689898-50689917 Msa1293510:intron 35.0%
ATTCGTGTATCAAAAGGAGA+TGG - chr8_3:50690095-50690114 Msa1293510:intron 35.0%
AATACTTCCATGACATTGCT+TGG - chr8_3:50690166-50690185 Msa1293510:CDS 35.0%
ATACTTCCATGACATTGCTT+GGG - chr8_3:50690167-50690186 Msa1293510:CDS 35.0%
! TCAAGTCTTGTCCAAAACAA+GGG + chr8_3:50690321-50690340 None:intergenic 35.0%
! AAGACTTGACTCTTTTCACA+TGG - chr8_3:50690332-50690351 Msa1293510:five_prime_UTR 35.0%
! AGACTTGACTCTTTTCACAT+GGG - chr8_3:50690333-50690352 Msa1293510:five_prime_UTR 35.0%
GAAAGAGATTAAGATGAACC+AGG + chr8_3:50688159-50688178 None:intergenic 35.0%
! CAGGGATTTTATTGTCATAG+AGG - chr8_3:50688433-50688452 Msa1293510:three_prime_UTR 35.0%
ATTTATACCACCAAAATGGG+TGG + chr8_3:50688692-50688711 None:intergenic 35.0%
!! ACCCATTTTGGTGGTATAAA+TGG - chr8_3:50688691-50688710 Msa1293510:intron 35.0%
!!! ACTTTAGAGTTTTTGGTGAG+TGG + chr8_3:50688794-50688813 None:intergenic 35.0%
!! CTCACCAAAAACTCTAAAGT+TGG - chr8_3:50688794-50688813 Msa1293510:intron 35.0%
CTCAACAAATTGAAATGCCT+CGG + chr8_3:50689098-50689117 None:intergenic 35.0%
TATACTGGGATTGTTGTAAC+CGG - chr8_3:50689144-50689163 Msa1293510:intron 35.0%
! TGTCAGTTTTCATGGTTGAA+TGG - chr8_3:50689173-50689192 Msa1293510:intron 35.0%
! AGTTTTCATGGTTGAATGGT+GGG - chr8_3:50689177-50689196 Msa1293510:intron 35.0%
!! GATATATTTTGTTGTCGCTG+CGG - chr8_3:50689509-50689528 Msa1293510:intron 35.0%
GTAAAAATAAGAGAGGATGG+TGG + chr8_3:50689566-50689585 None:intergenic 35.0%
! GAGAGAGATGCAATTTTAGA+AGG + chr8_3:50689661-50689680 None:intergenic 35.0%
! GAAAAGCCAAAAGTACAAAG+AGG - chr8_3:50689699-50689718 Msa1293510:intron 35.0%
! ACTTTCCCTCTTTGTACTTT+TGG + chr8_3:50689708-50689727 None:intergenic 35.0%
! AGGGAAAGTTTGTTCTTGAA+AGG - chr8_3:50689719-50689738 Msa1293510:intron 35.0%
TCCACTGAATTATGTGTTGA+GGG - chr8_3:50689863-50689882 Msa1293510:intron 35.0%
GAGTGATACTGAAGATGATT+AGG - chr8_3:50689898-50689917 Msa1293510:intron 35.0%
ATTCGTGTATCAAAAGGAGA+TGG - chr8_3:50690095-50690114 Msa1293510:intron 35.0%
AATACTTCCATGACATTGCT+TGG - chr8_3:50690166-50690185 Msa1293510:CDS 35.0%
ATACTTCCATGACATTGCTT+GGG - chr8_3:50690167-50690186 Msa1293510:CDS 35.0%
! TCAAGTCTTGTCCAAAACAA+GGG + chr8_3:50690321-50690340 None:intergenic 35.0%
! AAGACTTGACTCTTTTCACA+TGG - chr8_3:50690332-50690351 Msa1293510:five_prime_UTR 35.0%
! AGACTTGACTCTTTTCACAT+GGG - chr8_3:50690333-50690352 Msa1293510:five_prime_UTR 35.0%
AAGTGAAGAAGAAGAGTGAG+CGG - chr8_3:50688206-50688225 Msa1293510:intron 40.0%
AGCGGTGACATCAATCAAAT+GGG - chr8_3:50688224-50688243 Msa1293510:intron 40.0%
! GAGAATTTTTGCAGTTGAGC+TGG - chr8_3:50688247-50688266 Msa1293510:intron 40.0%
! ATTTTTGCAGTTGAGCTGGA+TGG - chr8_3:50688251-50688270 Msa1293510:intron 40.0%
! ATTCTGCTTCTGTGTTGATG+TGG - chr8_3:50688641-50688660 Msa1293510:intron 40.0%
!!! AGAGTTTTTGGTGAGTGGTA+TGG + chr8_3:50688789-50688808 None:intergenic 40.0%
!!! GGGACCAACTTTAGAGTTTT+TGG + chr8_3:50688801-50688820 None:intergenic 40.0%
GATGATAGAATGGGAGAGAA+AGG - chr8_3:50688915-50688934 Msa1293510:intron 40.0%
CAGTTCTTTAATTAGCACCG+TGG + chr8_3:50688959-50688978 None:intergenic 40.0%
! CACGGTGCTAATTAAAGAAC+TGG - chr8_3:50688957-50688976 Msa1293510:CDS 40.0%
! CAACCCTGACAAAGTGTTAT+TGG - chr8_3:50689002-50689021 Msa1293510:CDS 40.0%
!! TAAACATCGGTTGACTTGGT+GGG + chr8_3:50689042-50689061 None:intergenic 40.0%
!! ATAAACATCGGTTGACTTGG+TGG + chr8_3:50689043-50689062 None:intergenic 40.0%
! AGCATAAACATCGGTTGACT+TGG + chr8_3:50689046-50689065 None:intergenic 40.0%
CTAATACCAAACTAATGCCG+AGG - chr8_3:50689078-50689097 Msa1293510:intron 40.0%
ATGAAAACTGACAAGCTAGC+CGG + chr8_3:50689166-50689185 None:intergenic 40.0%
! CAGTTTTCATGGTTGAATGG+TGG - chr8_3:50689176-50689195 Msa1293510:intron 40.0%
ACAAAACTCCCACATACGTA+AGG + chr8_3:50689216-50689235 None:intergenic 40.0%
!! TATGTGGGAGTTTTGTACAC+CGG - chr8_3:50689220-50689239 Msa1293510:intron 40.0%
! CATGTGCATGCTTGTGTTTT+TGG - chr8_3:50689410-50689429 Msa1293510:intron 40.0%
CATGCTTGTCCATTTAACAG+AGG - chr8_3:50689815-50689834 Msa1293510:intron 40.0%
CTTGTCCATTTAACAGAGGA+AGG - chr8_3:50689819-50689838 Msa1293510:intron 40.0%
ACGATCCTTCCTCTGTTAAA+TGG + chr8_3:50689827-50689846 None:intergenic 40.0%
! GGAAGGATCGTTGATGAAAT+CGG - chr8_3:50689836-50689855 Msa1293510:intron 40.0%
CTCCACTGAATTATGTGTTG+AGG - chr8_3:50689862-50689881 Msa1293510:intron 40.0%
TTAGCCATCTATGAGGAAAC+TGG + chr8_3:50690126-50690145 None:intergenic 40.0%
AGTTTCCTCATAGATGGCTA+AGG - chr8_3:50690125-50690144 Msa1293510:intron 40.0%
CATATCCTTAGCCATCTATG+AGG + chr8_3:50690133-50690152 None:intergenic 40.0%
CTCATAGATGGCTAAGGATA+TGG - chr8_3:50690131-50690150 Msa1293510:intron 40.0%
! GTCAAGTCTTGTCCAAAACA+AGG + chr8_3:50690322-50690341 None:intergenic 40.0%
! GACTTGACTCTTTTCACATG+GGG - chr8_3:50690334-50690353 Msa1293510:five_prime_UTR 40.0%
! ACTTGACTCTTTTCACATGG+GGG - chr8_3:50690335-50690354 Msa1293510:five_prime_UTR 40.0%
AAGTGAAGAAGAAGAGTGAG+CGG - chr8_3:50688206-50688225 Msa1293510:intron 40.0%
AGCGGTGACATCAATCAAAT+GGG - chr8_3:50688224-50688243 Msa1293510:intron 40.0%
! GAGAATTTTTGCAGTTGAGC+TGG - chr8_3:50688247-50688266 Msa1293510:intron 40.0%
! ATTTTTGCAGTTGAGCTGGA+TGG - chr8_3:50688251-50688270 Msa1293510:intron 40.0%
! ATTCTGCTTCTGTGTTGATG+TGG - chr8_3:50688641-50688660 Msa1293510:intron 40.0%
!!! AGAGTTTTTGGTGAGTGGTA+TGG + chr8_3:50688789-50688808 None:intergenic 40.0%
!!! GGGACCAACTTTAGAGTTTT+TGG + chr8_3:50688801-50688820 None:intergenic 40.0%
GATGATAGAATGGGAGAGAA+AGG - chr8_3:50688915-50688934 Msa1293510:intron 40.0%
CAGTTCTTTAATTAGCACCG+TGG + chr8_3:50688959-50688978 None:intergenic 40.0%
! CACGGTGCTAATTAAAGAAC+TGG - chr8_3:50688957-50688976 Msa1293510:CDS 40.0%
! CAACCCTGACAAAGTGTTAT+TGG - chr8_3:50689002-50689021 Msa1293510:CDS 40.0%
!! TAAACATCGGTTGACTTGGT+GGG + chr8_3:50689042-50689061 None:intergenic 40.0%
!! ATAAACATCGGTTGACTTGG+TGG + chr8_3:50689043-50689062 None:intergenic 40.0%
! AGCATAAACATCGGTTGACT+TGG + chr8_3:50689046-50689065 None:intergenic 40.0%
CTAATACCAAACTAATGCCG+AGG - chr8_3:50689078-50689097 Msa1293510:intron 40.0%
ATGAAAACTGACAAGCTAGC+CGG + chr8_3:50689166-50689185 None:intergenic 40.0%
! CAGTTTTCATGGTTGAATGG+TGG - chr8_3:50689176-50689195 Msa1293510:intron 40.0%
ACAAAACTCCCACATACGTA+AGG + chr8_3:50689216-50689235 None:intergenic 40.0%
!! TATGTGGGAGTTTTGTACAC+CGG - chr8_3:50689220-50689239 Msa1293510:intron 40.0%
! CATGTGCATGCTTGTGTTTT+TGG - chr8_3:50689410-50689429 Msa1293510:intron 40.0%
CATGCTTGTCCATTTAACAG+AGG - chr8_3:50689815-50689834 Msa1293510:intron 40.0%
CTTGTCCATTTAACAGAGGA+AGG - chr8_3:50689819-50689838 Msa1293510:intron 40.0%
ACGATCCTTCCTCTGTTAAA+TGG + chr8_3:50689827-50689846 None:intergenic 40.0%
! GGAAGGATCGTTGATGAAAT+CGG - chr8_3:50689836-50689855 Msa1293510:intron 40.0%
CTCCACTGAATTATGTGTTG+AGG - chr8_3:50689862-50689881 Msa1293510:intron 40.0%
TTAGCCATCTATGAGGAAAC+TGG + chr8_3:50690126-50690145 None:intergenic 40.0%
AGTTTCCTCATAGATGGCTA+AGG - chr8_3:50690125-50690144 Msa1293510:intron 40.0%
CATATCCTTAGCCATCTATG+AGG + chr8_3:50690133-50690152 None:intergenic 40.0%
CTCATAGATGGCTAAGGATA+TGG - chr8_3:50690131-50690150 Msa1293510:intron 40.0%
! GTCAAGTCTTGTCCAAAACA+AGG + chr8_3:50690322-50690341 None:intergenic 40.0%
! GACTTGACTCTTTTCACATG+GGG - chr8_3:50690334-50690353 Msa1293510:five_prime_UTR 40.0%
! ACTTGACTCTTTTCACATGG+GGG - chr8_3:50690335-50690354 Msa1293510:five_prime_UTR 40.0%
AATAGTAATACTCCCTGCCC+TGG - chr8_3:50688138-50688157 Msa1293510:three_prime_UTR 45.0%
GATTAAGATGAACCAGGGCA+GGG + chr8_3:50688153-50688172 None:intergenic 45.0%
AGATTAAGATGAACCAGGGC+AGG + chr8_3:50688154-50688173 None:intergenic 45.0%
GAGCGGTGACATCAATCAAA+TGG - chr8_3:50688223-50688242 Msa1293510:intron 45.0%
GCGGTGACATCAATCAAATG+GGG - chr8_3:50688225-50688244 Msa1293510:intron 45.0%
! AAGAGCAAGGTGAGTTTTGC+AGG + chr8_3:50688297-50688316 None:intergenic 45.0%
TGAGATCAGTGGAAAGAGCA+AGG + chr8_3:50688310-50688329 None:intergenic 45.0%
TTTCCACTGATCTCATCTCC+AGG - chr8_3:50688315-50688334 Msa1293510:intron 45.0%
TTCCACTGATCTCATCTCCA+GGG - chr8_3:50688316-50688335 Msa1293510:intron 45.0%
AACACTTTGTCAGGGTTGCA+AGG + chr8_3:50689000-50689019 None:intergenic 45.0%
GAAATGCCTCGGCATTAGTT+TGG + chr8_3:50689087-50689106 None:intergenic 45.0%
!!! GGCTAGCTTGTCAGTTTTCA+TGG - chr8_3:50689165-50689184 Msa1293510:intron 45.0%
CATACGTAAGGTCCTGGAAA+GGG + chr8_3:50689204-50689223 None:intergenic 45.0%
ACATACGTAAGGTCCTGGAA+AGG + chr8_3:50689205-50689224 None:intergenic 45.0%
TTTCCAGGACCTTACGTATG+TGG - chr8_3:50689204-50689223 Msa1293510:intron 45.0%
TTCCAGGACCTTACGTATGT+GGG - chr8_3:50689205-50689224 Msa1293510:intron 45.0%
GTGAAGTTCACACTGTGTCA+TGG + chr8_3:50689437-50689456 None:intergenic 45.0%
CACAGTGTGAACTTCACTAG+TGG - chr8_3:50689440-50689459 Msa1293510:intron 45.0%
GAACTTCACTAGTGGAGAAG+TGG - chr8_3:50689448-50689467 Msa1293510:intron 45.0%
TGGAAAGAGCGATGCTTTCA+GGG - chr8_3:50689471-50689490 Msa1293510:intron 45.0%
TCTCTCATAGGAAACTGTGC+AGG - chr8_3:50689675-50689694 Msa1293510:intron 45.0%
GCCCTCAACACATAATTCAG+TGG + chr8_3:50689867-50689886 None:intergenic 45.0%
GATTGCATCAATGGCACCAA+TGG + chr8_3:50690195-50690214 None:intergenic 45.0%
CACCCATCAACACACATCAA+CGG + chr8_3:50690222-50690241 None:intergenic 45.0%
! TTGATGTGTGTTGATGGGTG+TGG - chr8_3:50690222-50690241 Msa1293510:CDS 45.0%
! TGATGTGTGTTGATGGGTGT+GGG - chr8_3:50690223-50690242 Msa1293510:CDS 45.0%
ACACAACTATGGCACCAAAG+TGG - chr8_3:50690293-50690312 Msa1293510:five_prime_UTR 45.0%
CCAAAACAAGGGTTCCACTT+TGG + chr8_3:50690310-50690329 None:intergenic 45.0%
!! CCAAAGTGGAACCCTTGTTT+TGG - chr8_3:50690307-50690326 Msa1293510:five_prime_UTR 45.0%
GGGGGCGAAGTTAGATAATA+TGG - chr8_3:50690353-50690372 Msa1293510:five_prime_UTR 45.0%
AATAGTAATACTCCCTGCCC+TGG - chr8_3:50688138-50688157 Msa1293510:three_prime_UTR 45.0%
GATTAAGATGAACCAGGGCA+GGG + chr8_3:50688153-50688172 None:intergenic 45.0%
AGATTAAGATGAACCAGGGC+AGG + chr8_3:50688154-50688173 None:intergenic 45.0%
GAGCGGTGACATCAATCAAA+TGG - chr8_3:50688223-50688242 Msa1293510:intron 45.0%
GCGGTGACATCAATCAAATG+GGG - chr8_3:50688225-50688244 Msa1293510:intron 45.0%
! AAGAGCAAGGTGAGTTTTGC+AGG + chr8_3:50688297-50688316 None:intergenic 45.0%
TGAGATCAGTGGAAAGAGCA+AGG + chr8_3:50688310-50688329 None:intergenic 45.0%
TTTCCACTGATCTCATCTCC+AGG - chr8_3:50688315-50688334 Msa1293510:intron 45.0%
TTCCACTGATCTCATCTCCA+GGG - chr8_3:50688316-50688335 Msa1293510:intron 45.0%
AACACTTTGTCAGGGTTGCA+AGG + chr8_3:50689000-50689019 None:intergenic 45.0%
GAAATGCCTCGGCATTAGTT+TGG + chr8_3:50689087-50689106 None:intergenic 45.0%
!!! GGCTAGCTTGTCAGTTTTCA+TGG - chr8_3:50689165-50689184 Msa1293510:intron 45.0%
CATACGTAAGGTCCTGGAAA+GGG + chr8_3:50689204-50689223 None:intergenic 45.0%
ACATACGTAAGGTCCTGGAA+AGG + chr8_3:50689205-50689224 None:intergenic 45.0%
TTTCCAGGACCTTACGTATG+TGG - chr8_3:50689204-50689223 Msa1293510:intron 45.0%
TTCCAGGACCTTACGTATGT+GGG - chr8_3:50689205-50689224 Msa1293510:intron 45.0%
GTGAAGTTCACACTGTGTCA+TGG + chr8_3:50689437-50689456 None:intergenic 45.0%
CACAGTGTGAACTTCACTAG+TGG - chr8_3:50689440-50689459 Msa1293510:intron 45.0%
GAACTTCACTAGTGGAGAAG+TGG - chr8_3:50689448-50689467 Msa1293510:intron 45.0%
TGGAAAGAGCGATGCTTTCA+GGG - chr8_3:50689471-50689490 Msa1293510:intron 45.0%
TCTCTCATAGGAAACTGTGC+AGG - chr8_3:50689675-50689694 Msa1293510:intron 45.0%
GCCCTCAACACATAATTCAG+TGG + chr8_3:50689867-50689886 None:intergenic 45.0%
GATTGCATCAATGGCACCAA+TGG + chr8_3:50690195-50690214 None:intergenic 45.0%
CACCCATCAACACACATCAA+CGG + chr8_3:50690222-50690241 None:intergenic 45.0%
! TTGATGTGTGTTGATGGGTG+TGG - chr8_3:50690222-50690241 Msa1293510:CDS 45.0%
! TGATGTGTGTTGATGGGTGT+GGG - chr8_3:50690223-50690242 Msa1293510:CDS 45.0%
ACACAACTATGGCACCAAAG+TGG - chr8_3:50690293-50690312 Msa1293510:five_prime_UTR 45.0%
CCAAAACAAGGGTTCCACTT+TGG + chr8_3:50690310-50690329 None:intergenic 45.0%
!! CCAAAGTGGAACCCTTGTTT+TGG - chr8_3:50690307-50690326 Msa1293510:five_prime_UTR 45.0%
GAGCTGGATGGCAGAGTTTA+CGG - chr8_3:50688263-50688282 Msa1293510:intron 50.0%
TACCCTGGAGATGAGATCAG+TGG + chr8_3:50688321-50688340 None:intergenic 50.0%
CAAAATGGGTGGCATGGATG+TGG + chr8_3:50688681-50688700 None:intergenic 50.0%
! CACATCCATGCCACCCATTT+TGG - chr8_3:50688679-50688698 Msa1293510:intron 50.0%
! ATCCATGCCACCCATTTTGG+TGG - chr8_3:50688682-50688701 Msa1293510:intron 50.0%
TACCACCAAAATGGGTGGCA+TGG + chr8_3:50688687-50688706 None:intergenic 50.0%
AATGGGAGAGAAAGGAACCG+TGG - chr8_3:50688923-50688942 Msa1293510:intron 50.0%
ACCGTGGTATTGCAGAACCA+CGG - chr8_3:50688939-50688958 Msa1293510:CDS 50.0%
! ACCGTGGTTCTGCAATACCA+CGG + chr8_3:50688943-50688962 None:intergenic 50.0%
!! TGGGAGTTTTGTACACCGGA+CGG - chr8_3:50689224-50689243 Msa1293510:intron 50.0%
CTTCACTAGTGGAGAAGTGG+TGG - chr8_3:50689451-50689470 Msa1293510:intron 50.0%
GTGGAAAGAGCGATGCTTTC+AGG - chr8_3:50689470-50689489 Msa1293510:intron 50.0%
TGTCGCTGCGGTCAGATAAT+TGG - chr8_3:50689521-50689540 Msa1293510:intron 50.0%
ACCGCCAGTTTCCTCATAGA+TGG - chr8_3:50690119-50690138 Msa1293510:intron 50.0%
GCCATCTATGAGGAAACTGG+CGG + chr8_3:50690123-50690142 None:intergenic 50.0%
ATGGCACCCAAGCAATGTCA+TGG + chr8_3:50690176-50690195 None:intergenic 50.0%
! TGACATTGCTTGGGTGCCAT+TGG - chr8_3:50690176-50690195 Msa1293510:CDS 50.0%
!! TGGTGCCATTGATGCAATCC+TGG - chr8_3:50690196-50690215 Msa1293510:CDS 50.0%
AACGGCCAGGATTGCATCAA+TGG + chr8_3:50690204-50690223 None:intergenic 50.0%
ATCAACACACATCAACGGCC+AGG + chr8_3:50690217-50690236 None:intergenic 50.0%
TGGCCGTTGATGTGTGTTGA+TGG - chr8_3:50690216-50690235 Msa1293510:CDS 50.0%
! GGCCGTTGATGTGTGTTGAT+GGG - chr8_3:50690217-50690236 Msa1293510:CDS 50.0%
! GATGTGTGTTGATGGGTGTG+GGG - chr8_3:50690224-50690243 Msa1293510:CDS 50.0%
GTGTGTGTGATGTGTGTGTG+TGG - chr8_3:50690249-50690268 Msa1293510:five_prime_UTR 50.0%
GTGGAGATGGCACACAACTA+TGG - chr8_3:50690282-50690301 Msa1293510:five_prime_UTR 50.0%
GAGCTGGATGGCAGAGTTTA+CGG - chr8_3:50688263-50688282 Msa1293510:intron 50.0%
TACCCTGGAGATGAGATCAG+TGG + chr8_3:50688321-50688340 None:intergenic 50.0%
CAAAATGGGTGGCATGGATG+TGG + chr8_3:50688681-50688700 None:intergenic 50.0%
! CACATCCATGCCACCCATTT+TGG - chr8_3:50688679-50688698 Msa1293510:intron 50.0%
! ATCCATGCCACCCATTTTGG+TGG - chr8_3:50688682-50688701 Msa1293510:intron 50.0%
TACCACCAAAATGGGTGGCA+TGG + chr8_3:50688687-50688706 None:intergenic 50.0%
AATGGGAGAGAAAGGAACCG+TGG - chr8_3:50688923-50688942 Msa1293510:intron 50.0%
ACCGTGGTATTGCAGAACCA+CGG - chr8_3:50688939-50688958 Msa1293510:CDS 50.0%
! ACCGTGGTTCTGCAATACCA+CGG + chr8_3:50688943-50688962 None:intergenic 50.0%
!! TGGGAGTTTTGTACACCGGA+CGG - chr8_3:50689224-50689243 Msa1293510:intron 50.0%
CTTCACTAGTGGAGAAGTGG+TGG - chr8_3:50689451-50689470 Msa1293510:intron 50.0%
GTGGAAAGAGCGATGCTTTC+AGG - chr8_3:50689470-50689489 Msa1293510:intron 50.0%
TGTCGCTGCGGTCAGATAAT+TGG - chr8_3:50689521-50689540 Msa1293510:intron 50.0%
ACCGCCAGTTTCCTCATAGA+TGG - chr8_3:50690119-50690138 Msa1293510:intron 50.0%
GCCATCTATGAGGAAACTGG+CGG + chr8_3:50690123-50690142 None:intergenic 50.0%
ATGGCACCCAAGCAATGTCA+TGG + chr8_3:50690176-50690195 None:intergenic 50.0%
! TGACATTGCTTGGGTGCCAT+TGG - chr8_3:50690176-50690195 Msa1293510:CDS 50.0%
!! TGGTGCCATTGATGCAATCC+TGG - chr8_3:50690196-50690215 Msa1293510:CDS 50.0%
AACGGCCAGGATTGCATCAA+TGG + chr8_3:50690204-50690223 None:intergenic 50.0%
ATCAACACACATCAACGGCC+AGG + chr8_3:50690217-50690236 None:intergenic 50.0%
TGGCCGTTGATGTGTGTTGA+TGG - chr8_3:50690216-50690235 Msa1293510:CDS 50.0%
! GGCCGTTGATGTGTGTTGAT+GGG - chr8_3:50690217-50690236 Msa1293510:CDS 50.0%
! GATGTGTGTTGATGGGTGTG+GGG - chr8_3:50690224-50690243 Msa1293510:CDS 50.0%
GTGTGTGTGATGTGTGTGTG+TGG - chr8_3:50690249-50690268 Msa1293510:five_prime_UTR 50.0%
GTGGAGATGGCACACAACTA+TGG - chr8_3:50690282-50690301 Msa1293510:five_prime_UTR 50.0%
!! ACATCGGTTGACTTGGTGGG+TGG + chr8_3:50689039-50689058 None:intergenic 55.0%
! TGAATGGTGGGACCCTTTCC+AGG - chr8_3:50689189-50689208 Msa1293510:intron 55.0%
CTCCCACATACGTAAGGTCC+TGG + chr8_3:50689210-50689229 None:intergenic 55.0%
!! GGGAGTTTTGTACACCGGAC+GGG - chr8_3:50689225-50689244 Msa1293510:intron 55.0%
GCTGCGGTCAGATAATTGGC+TGG - chr8_3:50689525-50689544 Msa1293510:intron 55.0%
GTGTGTGTGTGGTGTGTGTG+TGG - chr8_3:50690260-50690279 Msa1293510:five_prime_UTR 55.0%
TGTGTGTGGTGTGTGTGTGG+TGG - chr8_3:50690263-50690282 Msa1293510:five_prime_UTR 55.0%
! TGGTGTGTGTGTGGTGGAGA+TGG - chr8_3:50690269-50690288 Msa1293510:five_prime_UTR 55.0%
!! ACATCGGTTGACTTGGTGGG+TGG + chr8_3:50689039-50689058 None:intergenic 55.0%
! TGAATGGTGGGACCCTTTCC+AGG - chr8_3:50689189-50689208 Msa1293510:intron 55.0%
CTCCCACATACGTAAGGTCC+TGG + chr8_3:50689210-50689229 None:intergenic 55.0%
!! GGGAGTTTTGTACACCGGAC+GGG - chr8_3:50689225-50689244 Msa1293510:intron 55.0%
GCTGCGGTCAGATAATTGGC+TGG - chr8_3:50689525-50689544 Msa1293510:intron 55.0%
GTGTGTGTGTGGTGTGTGTG+TGG - chr8_3:50690260-50690279 Msa1293510:five_prime_UTR 55.0%
TGTGTGTGGTGTGTGTGTGG+TGG - chr8_3:50690263-50690282 Msa1293510:five_prime_UTR 55.0%
! TGGTGTGTGTGTGGTGGAGA+TGG - chr8_3:50690269-50690288 Msa1293510:five_prime_UTR 55.0%
ACATTCAGGGCAGTCCCGTC+CGG + chr8_3:50689242-50689261 None:intergenic 60.0%
ACATTCAGGGCAGTCCCGTC+CGG + chr8_3:50689242-50689261 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 50688114 50690375 50688114 ID=Msa1293510;Name=Msa1293510
chr8_3 mRNA 50688114 50690375 50688114 ID=Msa1293510-mRNA-1;Parent=Msa1293510;Name=Msa1293510-mRNA-1;_AED=0.16;_eAED=0.16;_QI=128|1|1|1|0.8|0.66|6|294|129
chr8_3 exon 50688114 50688165 50688114 ID=Msa1293510-mRNA-1:exon:14164;Parent=Msa1293510-mRNA-1
chr8_3 exon 50688328 50688654 50688328 ID=Msa1293510-mRNA-1:exon:14163;Parent=Msa1293510-mRNA-1
chr8_3 exon 50688749 50688804 50688749 ID=Msa1293510-mRNA-1:exon:14162;Parent=Msa1293510-mRNA-1
chr8_3 exon 50688936 50689044 50688936 ID=Msa1293510-mRNA-1:exon:14161;Parent=Msa1293510-mRNA-1
chr8_3 exon 50690010 50690053 50690010 ID=Msa1293510-mRNA-1:exon:14160;Parent=Msa1293510-mRNA-1
chr8_3 exon 50690152 50690375 50690152 ID=Msa1293510-mRNA-1:exon:14159;Parent=Msa1293510-mRNA-1
chr8_3 five_prime_UTR 50690248 50690375 50690248 ID=Msa1293510-mRNA-1:five_prime_utr;Parent=Msa1293510-mRNA-1
chr8_3 CDS 50690152 50690247 50690152 ID=Msa1293510-mRNA-1:cds;Parent=Msa1293510-mRNA-1
chr8_3 CDS 50690010 50690053 50690010 ID=Msa1293510-mRNA-1:cds;Parent=Msa1293510-mRNA-1
chr8_3 CDS 50688936 50689044 50688936 ID=Msa1293510-mRNA-1:cds;Parent=Msa1293510-mRNA-1
chr8_3 CDS 50688749 50688804 50688749 ID=Msa1293510-mRNA-1:cds;Parent=Msa1293510-mRNA-1
chr8_3 CDS 50688570 50688654 50688570 ID=Msa1293510-mRNA-1:cds;Parent=Msa1293510-mRNA-1
chr8_3 three_prime_UTR 50688328 50688569 50688328 ID=Msa1293510-mRNA-1:three_prime_utr;Parent=Msa1293510-mRNA-1
chr8_3 three_prime_UTR 50688114 50688165 50688114 ID=Msa1293510-mRNA-1:three_prime_utr;Parent=Msa1293510-mRNA-1
Gene Sequence

>Msa1293510

ATGGGGAGAATTTTTGCAGTTGAGCTGGATGGCAGAGTTTACGGCTGCAAGTCCTGCAAAACTCACCTTGCTCTTTCCACTGATCTCATCTCCAGGGGATTTTATTGTCATAGAGGAAAAGCATACCTTTTCAATAATGTTGTGAACTTCACTAGTGGAGAAGTGGTGGAAAGAGCGATGCTTTCAGGGATGCATACTGTTGCAGATATATTTTGTTGTCGCTGCGGTCAGATAATTGGCTGGAAATACGAAACTGTGCAGGAGAAAAGCCAAAAGTACAAAGAGGGAAAGTTTGTTCTTGAAAGAGGAAGGATCGTTGATGAAATCGGTTTCTCCACTGAATTATGTGTTGAGGGCTGTGTCAGCATGAGTGATACTGAAGATGATTAG

Protein sequence

>Msa1293510

MGRIFAVELDGRVYGCKSCKTHLALSTDLISRGFYCHRGKAYLFNNVVNFTSGEVVERAMLSGMHTVADIFCCRCGQIIGWKYETVQEKSQKYKEGKFVLERGRIVDEIGFSTELCVEGCVSMSDTEDD*