Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370740 | XP_003591549.2 | 98.361 | 183 | 3 | 0 | 44 | 226 | 1 | 183 | 9.97e-128 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370740 | sp|P0C8Z0|Y8359_ORYSI | 67.692 | 130 | 40 | 1 | 44 | 173 | 1 | 128 | 2.97e-60 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370740 | G7IF81 | 98.361 | 183 | 3 | 0 | 44 | 226 | 1 | 183 | 4.76e-128 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031340 | Msa1370740 | 0.806580 | 7.676964e-50 | -8.615850e-47 |
| Msa0032260 | Msa1370740 | 0.802096 | 6.598862e-49 | -8.615850e-47 |
| Msa0056470 | Msa1370740 | 0.807968 | 3.900098e-50 | -8.615850e-47 |
| Msa0064350 | Msa1370740 | 0.820216 | 7.710672e-53 | -8.615850e-47 |
| Msa0069330 | Msa1370740 | 0.815585 | 8.574082e-52 | -8.615850e-47 |
| Msa0076000 | Msa1370740 | 0.816026 | 6.837470e-52 | -8.615850e-47 |
| Msa0078650 | Msa1370740 | 0.831119 | 1.999208e-55 | -8.615850e-47 |
| Msa0089360 | Msa1370740 | 0.802040 | 6.775212e-49 | -8.615850e-47 |
| Msa0090360 | Msa1370740 | 0.824912 | 6.242760e-54 | -8.615850e-47 |
| Msa0094470 | Msa1370740 | 0.800048 | 1.729856e-48 | -8.615850e-47 |
| Msa0104550 | Msa1370740 | 0.816432 | 5.548170e-52 | -8.615850e-47 |
| Msa1346730 | Msa1370740 | 0.809876 | 1.523151e-50 | -8.615850e-47 |
| Msa1353060 | Msa1370740 | 0.831835 | 1.332684e-55 | -8.615850e-47 |
| Msa1353980 | Msa1370740 | 0.801293 | 9.641316e-49 | -8.615850e-47 |
| Msa1356440 | Msa1370740 | 0.823464 | 1.365634e-53 | -8.615850e-47 |
| Msa1361100 | Msa1370740 | 0.800012 | 1.759546e-48 | -8.615850e-47 |
| Msa1367590 | Msa1370740 | 0.819248 | 1.283299e-52 | -8.615850e-47 |
| Msa1370070 | Msa1370740 | -0.804974 | 1.669229e-49 | -8.615850e-47 |
| Msa1370740 | Msa1385670 | 0.816620 | 5.034640e-52 | -8.615850e-47 |
| Msa1370740 | Msa1394290 | 0.803987 | 2.681553e-49 | -8.615850e-47 |
| Msa1370740 | Msa1402420 | -0.809667 | 1.689813e-50 | -8.615850e-47 |
| Msa1370740 | Msa1419870 | 0.808621 | 2.829949e-50 | -8.615850e-47 |
| Msa1370740 | Msa1433390 | 0.822696 | 2.063018e-53 | -8.615850e-47 |
| Msa1370740 | Msa1435370 | 0.809623 | 1.727074e-50 | -8.615850e-47 |
| Msa1370740 | Msa1443780 | 0.967029 | 1.021350e-126 | -8.615850e-47 |
| Msa1370740 | Msa1457910 | 0.802519 | 5.397455e-49 | -8.615850e-47 |
| Msa1370740 | Msa1461280 | 0.822298 | 2.552985e-53 | -8.615850e-47 |
| Msa1370740 | Msa1466300 | 0.811946 | 5.428446e-51 | -8.615850e-47 |
| Msa0607050 | Msa1370740 | 0.805908 | 1.063839e-49 | -8.615850e-47 |
| Msa0612960 | Msa1370740 | 0.830604 | 2.674075e-55 | -8.615850e-47 |
| Msa0639310 | Msa1370740 | 0.827670 | 1.376373e-54 | -8.615850e-47 |
| Msa0655560 | Msa1370740 | 0.807859 | 4.114604e-50 | -8.615850e-47 |
| Msa0661300 | Msa1370740 | 0.809621 | 1.728151e-50 | -8.615850e-47 |
| Msa0662500 | Msa1370740 | 0.817699 | 2.879394e-52 | -8.615850e-47 |
| Msa0663390 | Msa1370740 | 0.809741 | 1.628488e-50 | -8.615850e-47 |
| Msa0687630 | Msa1370740 | 0.804648 | 1.952791e-49 | -8.615850e-47 |
| Msa0689500 | Msa1370740 | 0.804695 | 1.909543e-49 | -8.615850e-47 |
| Msa0690150 | Msa1370740 | 0.819594 | 1.069899e-52 | -8.615850e-47 |
| Msa0709500 | Msa1370740 | 0.833711 | 4.557172e-56 | -8.615850e-47 |
| Msa0711890 | Msa1370740 | 0.804969 | 1.673586e-49 | -8.615850e-47 |
| Msa0713820 | Msa1370740 | 0.830983 | 2.159008e-55 | -8.615850e-47 |
| Msa0724830 | Msa1370740 | 0.803866 | 2.841840e-49 | -8.615850e-47 |
| Msa0749760 | Msa1370740 | 0.806439 | 8.221440e-50 | -8.615850e-47 |
| Msa0750170 | Msa1370740 | 0.822728 | 2.028503e-53 | -8.615850e-47 |
| Msa0750430 | Msa1370740 | 0.811583 | 6.511747e-51 | -8.615850e-47 |
| Msa0750880 | Msa1370740 | 0.832771 | 7.817602e-56 | -8.615850e-47 |
| Msa0756060 | Msa1370740 | 0.819002 | 1.459544e-52 | -8.615850e-47 |
| Msa0761940 | Msa1370740 | 0.820166 | 7.916657e-53 | -8.615850e-47 |
| Msa0790000 | Msa1370740 | 0.836190 | 1.081998e-56 | -8.615850e-47 |
| Msa0790850 | Msa1370740 | 0.824312 | 8.640875e-54 | -8.615850e-47 |
| Msa0794670 | Msa1370740 | 0.804703 | 1.902388e-49 | -8.615850e-47 |
| Msa0794730 | Msa1370740 | 0.814672 | 1.367334e-51 | -8.615850e-47 |
| Msa0797750 | Msa1370740 | 0.814453 | 1.528878e-51 | -8.615850e-47 |
| Msa0816590 | Msa1370740 | 0.800433 | 1.444759e-48 | -8.615850e-47 |
| Msa0820770 | Msa1370740 | 0.800293 | 1.542632e-48 | -8.615850e-47 |
| Msa0835280 | Msa1370740 | 0.820676 | 6.048085e-53 | -8.615850e-47 |
| Msa0126370 | Msa1370740 | 0.824888 | 6.324454e-54 | -8.615850e-47 |
| Msa0129060 | Msa1370740 | 0.941714 | 2.571237e-101 | -8.615850e-47 |
| Msa0137840 | Msa1370740 | 0.829987 | 3.783950e-55 | -8.615850e-47 |
| Msa0140780 | Msa1370740 | 0.818595 | 1.805699e-52 | -8.615850e-47 |
| Msa0148100 | Msa1370740 | 0.806274 | 8.905276e-50 | -8.615850e-47 |
| Msa0170570 | Msa1370740 | 0.802667 | 5.032674e-49 | -8.615850e-47 |
| Msa0171290 | Msa1370740 | 0.835764 | 1.387465e-56 | -8.615850e-47 |
| Msa0174860 | Msa1370740 | 0.895863 | 6.396599e-76 | -8.615850e-47 |
| Msa0184040 | Msa1370740 | 0.826962 | 2.034009e-54 | -8.615850e-47 |
| Msa0184960 | Msa1370740 | 0.800235 | 1.585086e-48 | -8.615850e-47 |
| Msa0191050 | Msa1370740 | 0.831011 | 2.125464e-55 | -8.615850e-47 |
| Msa0204980 | Msa1370740 | 0.812966 | 3.249655e-51 | -8.615850e-47 |
| Msa0216240 | Msa1370740 | 0.816765 | 4.670440e-52 | -8.615850e-47 |
| Msa0229760 | Msa1370740 | 0.806335 | 8.649384e-50 | -8.615850e-47 |
| Msa0231650 | Msa1370740 | 0.803077 | 4.139865e-49 | -8.615850e-47 |
| Msa0231980 | Msa1370740 | 0.812462 | 4.187591e-51 | -8.615850e-47 |
| Msa0233350 | Msa1370740 | 0.835480 | 1.637795e-56 | -8.615850e-47 |
| Msa1244610 | Msa1370740 | 0.802322 | 5.927579e-49 | -8.615850e-47 |
| Msa1251160 | Msa1370740 | 0.804084 | 2.560038e-49 | -8.615850e-47 |
| Msa1253020 | Msa1370740 | 0.800112 | 1.679184e-48 | -8.615850e-47 |
| Msa1283170 | Msa1370740 | 0.809464 | 1.867661e-50 | -8.615850e-47 |
| Msa1304820 | Msa1370740 | 0.802541 | 5.342243e-49 | -8.615850e-47 |
| Msa1305660 | Msa1370740 | 0.810503 | 1.115791e-50 | -8.615850e-47 |
| Msa1305710 | Msa1370740 | 0.808587 | 2.878978e-50 | -8.615850e-47 |
| Msa1307950 | Msa1370740 | 0.813496 | 2.485719e-51 | -8.615850e-47 |
| Msa1316830 | Msa1370740 | 0.802177 | 6.349514e-49 | -8.615850e-47 |
| Msa1331910 | Msa1370740 | 0.823385 | 1.425106e-53 | -8.615850e-47 |
| Msa1340650 | Msa1370740 | 0.805701 | 1.175573e-49 | -8.615850e-47 |
| Msa1342900 | Msa1370740 | 0.817063 | 4.005353e-52 | -8.615850e-47 |
| Msa0366890 | Msa1370740 | 0.813896 | 2.028992e-51 | -8.615850e-47 |
| Msa0369450 | Msa1370740 | 0.801612 | 8.295597e-49 | -8.615850e-47 |
| Msa0372660 | Msa1370740 | 0.813956 | 1.968404e-51 | -8.615850e-47 |
| Msa0372670 | Msa1370740 | 0.806278 | 8.889501e-50 | -8.615850e-47 |
| Msa0376300 | Msa1370740 | 0.825141 | 5.511203e-54 | -8.615850e-47 |
| Msa0376310 | Msa1370740 | 0.829189 | 5.917353e-55 | -8.615850e-47 |
| Msa0376690 | Msa1370740 | 0.802492 | 5.468261e-49 | -8.615850e-47 |
| Msa0387730 | Msa1370740 | 0.832904 | 7.242822e-56 | -8.615850e-47 |
| Msa0388700 | Msa1370740 | 0.822313 | 2.532294e-53 | -8.615850e-47 |
| Msa0395820 | Msa1370740 | 0.800994 | 1.109904e-48 | -8.615850e-47 |
| Msa0422400 | Msa1370740 | 0.801693 | 7.980975e-49 | -8.615850e-47 |
| Msa0469990 | Msa1370740 | 0.812415 | 4.288369e-51 | -8.615850e-47 |
| Msa0471590 | Msa1370740 | 0.802434 | 5.620677e-49 | -8.615850e-47 |
| Msa0474950 | Msa1370740 | 0.830085 | 3.580846e-55 | -8.615850e-47 |
| Msa0477080 | Msa1370740 | 0.803454 | 3.459157e-49 | -8.615850e-47 |
| Msa0481530 | Msa1370740 | 0.815587 | 8.566909e-52 | -8.615850e-47 |
| Msa1010350 | Msa1370740 | 0.827011 | 1.979694e-54 | -8.615850e-47 |
| Msa1013040 | Msa1370740 | 0.801816 | 7.532332e-49 | -8.615850e-47 |
| Msa1013400 | Msa1370740 | 0.813782 | 2.150424e-51 | -8.615850e-47 |
| Msa1014420 | Msa1370740 | 0.809673 | 1.684453e-50 | -8.615850e-47 |
| Msa1023920 | Msa1370740 | 0.805885 | 1.075521e-49 | -8.615850e-47 |
| Msa1034150 | Msa1370740 | 0.801919 | 7.174156e-49 | -8.615850e-47 |
| Msa1040400 | Msa1370740 | 0.812269 | 4.614932e-51 | -8.615850e-47 |
| Msa1043390 | Msa1370740 | 0.822499 | 2.292134e-53 | -8.615850e-47 |
| Msa1043450 | Msa1370740 | 0.820158 | 7.950819e-53 | -8.615850e-47 |
| Msa1062920 | Msa1370740 | 0.803643 | 3.160777e-49 | -8.615850e-47 |
| Msa1081150 | Msa1370740 | 0.808472 | 3.046329e-50 | -8.615850e-47 |
| Msa1093530 | Msa1370740 | 0.808518 | 2.976964e-50 | -8.615850e-47 |
| Msa1101600 | Msa1370740 | 0.800457 | 1.428634e-48 | -8.615850e-47 |
| Msa0243100 | Msa1370740 | 0.801158 | 1.027335e-48 | -8.615850e-47 |
| Msa0271810 | Msa1370740 | 0.801457 | 8.924916e-49 | -8.615850e-47 |
| Msa0282250 | Msa1370740 | 0.820410 | 6.960293e-53 | -8.615850e-47 |
| Msa0287650 | Msa1370740 | 0.830748 | 2.466338e-55 | -8.615850e-47 |
| Msa0311700 | Msa1370740 | 0.804235 | 2.381027e-49 | -8.615850e-47 |
| Msa0351810 | Msa1370740 | 0.802232 | 6.185425e-49 | -8.615850e-47 |
| Msa1107900 | Msa1370740 | 0.810760 | 9.818560e-51 | -8.615850e-47 |
| Msa1121440 | Msa1370740 | 0.803261 | 3.793875e-49 | -8.615850e-47 |
| Msa1125760 | Msa1370740 | 0.827265 | 1.720931e-54 | -8.615850e-47 |
| Msa1127890 | Msa1370740 | 0.807506 | 4.889608e-50 | -8.615850e-47 |
| Msa1147900 | Msa1370740 | 0.804214 | 2.404852e-49 | -8.615850e-47 |
| Msa1160590 | Msa1370740 | 0.810152 | 1.328769e-50 | -8.615850e-47 |
| Msa1165870 | Msa1370740 | 0.815876 | 7.383103e-52 | -8.615850e-47 |
| Msa1165920 | Msa1370740 | 0.813865 | 2.061673e-51 | -8.615850e-47 |
| Msa1165940 | Msa1370740 | 0.832898 | 7.268970e-56 | -8.615850e-47 |
| Msa1166330 | Msa1370740 | 0.803507 | 3.372913e-49 | -8.615850e-47 |
| Msa1170170 | Msa1370740 | 0.806558 | 7.761847e-50 | -8.615850e-47 |
| Msa1171360 | Msa1370740 | 0.833709 | 4.563781e-56 | -8.615850e-47 |
| Msa1187840 | Msa1370740 | 0.800778 | 1.228585e-48 | -8.615850e-47 |
| Msa1190930 | Msa1370740 | 0.801407 | 9.135754e-49 | -8.615850e-47 |
| Msa1214890 | Msa1370740 | 0.814992 | 1.161350e-51 | -8.615850e-47 |
| Msa1218600 | Msa1370740 | 0.816245 | 6.107290e-52 | -8.615850e-47 |
| Msa0502100 | Msa1370740 | 0.809947 | 1.470447e-50 | -8.615850e-47 |
| Msa0518390 | Msa1370740 | 0.807651 | 4.555575e-50 | -8.615850e-47 |
| Msa0524500 | Msa1370740 | 0.803692 | 3.087458e-49 | -8.615850e-47 |
| Msa0545070 | Msa1370740 | 0.804982 | 1.662827e-49 | -8.615850e-47 |
| Msa0552810 | Msa1370740 | 0.815851 | 7.478640e-52 | -8.615850e-47 |
| Msa0556060 | Msa1370740 | 0.806389 | 8.425000e-50 | -8.615850e-47 |
| Msa0556100 | Msa1370740 | 0.817191 | 3.748412e-52 | -8.615850e-47 |
| Msa0558230 | Msa1370740 | 0.815998 | 6.934232e-52 | -8.615850e-47 |
| Msa0578860 | Msa1370740 | 0.808832 | 2.552045e-50 | -8.615850e-47 |
| Msa0869100 | Msa1370740 | 0.853922 | 1.734519e-61 | -8.615850e-47 |
| Msa0902760 | Msa1370740 | 0.809369 | 1.958148e-50 | -8.615850e-47 |
| Msa0930140 | Msa1370740 | 0.801598 | 8.350063e-49 | -8.615850e-47 |
| Msa0933230 | Msa1370740 | 0.843897 | 1.056416e-58 | -8.615850e-47 |
| Msa0933310 | Msa1370740 | 0.873344 | 1.581428e-67 | -8.615850e-47 |
| Msa0966400 | Msa1370740 | 0.800214 | 1.600877e-48 | -8.615850e-47 |
| Msa0968590 | Msa1370740 | 0.841465 | 4.675720e-58 | -8.615850e-47 |
| Msa0969340 | Msa1370740 | 0.800098 | 1.690345e-48 | -8.615850e-47 |
| Msa0969630 | Msa1370740 | 0.817914 | 2.575881e-52 | -8.615850e-47 |
| Msa0970030 | Msa1370740 | 0.822012 | 2.973880e-53 | -8.615850e-47 |
| Msa0971090 | Msa1370740 | 0.857171 | 1.957022e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370740 | MtrunA17_Chr1g0195701 | 98.361 | 183 | 3 | 0 | 44 | 226 | 1 | 183 | 9.17e-132 | 368 |
| Msa1370740 | MtrunA17_Chr7g0269271 | 77.778 | 108 | 24 | 0 | 44 | 151 | 1 | 108 | 1.08e-58 | 185 |
| Msa1370740 | MtrunA17_Chr6g0465301 | 45.890 | 146 | 74 | 1 | 44 | 184 | 1 | 146 | 7.86e-40 | 135 |
| Msa1370740 | MtrunA17_Chr6g0460991 | 49.541 | 109 | 54 | 1 | 44 | 152 | 1 | 108 | 1.76e-33 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1370740 | AT4G02450.2 | 61.600 | 125 | 45 | 2 | 44 | 166 | 1 | 124 | 3.81e-52 | 169 |
| Msa1370740 | AT4G02450.1 | 61.600 | 125 | 45 | 2 | 44 | 166 | 1 | 124 | 3.92e-52 | 169 |
| Msa1370740 | AT3G03773.1 | 48.252 | 143 | 68 | 4 | 44 | 186 | 1 | 137 | 1.59e-37 | 128 |
| Msa1370740 | AT3G03773.3 | 52.137 | 117 | 54 | 2 | 44 | 160 | 1 | 115 | 2.32e-37 | 127 |
| Msa1370740 | AT3G03773.2 | 45.395 | 152 | 77 | 4 | 35 | 186 | 46 | 191 | 2.57e-36 | 127 |
Find 72 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGTTGATTGGGATAAA+TGG | 0.226101 | tig0019143:-64696 | Msa1370740:CDS |
| GTATGCGTTGTACCTCGTTT+TGG | 0.292489 | tig0019143:+66199 | None:intergenic |
| CATAATACAAGCTAATGTTT+AGG | 0.316115 | tig0019143:+63143 | None:intergenic |
| TGAAGGAAAGACACGGTATC+TGG | 0.322168 | tig0019143:-63057 | Msa1370740:three_prime_UTR |
| CACATTATGTGAAAGTTGAT+TGG | 0.336982 | tig0019143:-64705 | Msa1370740:CDS |
| CTATGTCACGATTCAGTTGC+CGG | 0.340941 | tig0019143:-65243 | Msa1370740:CDS |
| ATGTTAAACGAAGAACATTC+TGG | 0.361010 | tig0019143:-66262 | None:intergenic |
| ATGTGCTTGAAGCAGCTTCC+TGG | 0.366179 | tig0019143:+63291 | None:intergenic |
| ATAATACAAGCTAATGTTTA+GGG | 0.373227 | tig0019143:+63144 | None:intergenic |
| TTGAGATGTTTATTTATTGA+AGG | 0.382394 | tig0019143:-63074 | Msa1370740:three_prime_UTR |
| GGACGGTGCTCTTGCCAGCT+TGG | 0.394866 | tig0019143:+63312 | None:intergenic |
| AGGTCTCGGTGACCTGGACT+TGG | 0.409814 | tig0019143:-64558 | Msa1370740:CDS |
| CTTGGGAGGGATGGATTTCT+CGG | 0.410768 | tig0019143:-64540 | Msa1370740:intron |
| AGTCTGACTGTAGTATCGTT+TGG | 0.426310 | tig0019143:-63205 | Msa1370740:three_prime_UTR |
| ACATTATGTGAAAGTTGATT+GGG | 0.435304 | tig0019143:-64704 | Msa1370740:CDS |
| CTTTGAGCCCACTTGACCTC+CGG | 0.445693 | tig0019143:+65278 | None:intergenic |
| AGCTGGCAAGAGCACCGTCC+AGG | 0.453170 | tig0019143:-63309 | Msa1370740:CDS |
| CATATTCTGTGTAGTGCAAA+AGG | 0.459449 | tig0019143:-64776 | Msa1370740:CDS |
| TCAAAACACCGTCTGGAGTA+AGG | 0.459550 | tig0019143:+65198 | None:intergenic |
| TTTATTAGGTCTCGGTGACC+TGG | 0.461080 | tig0019143:-64564 | Msa1370740:intron |
| AAGAACATTCTGGAAACAAC+AGG | 0.465456 | tig0019143:-66252 | Msa1370740:CDS |
| GAAAGTTGATTGGGATAAAT+GGG | 0.470728 | tig0019143:-64695 | Msa1370740:CDS |
| GCTTGAATGCAGTCGTCATC+CGG | 0.473159 | tig0019143:-65297 | Msa1370740:intron |
| GTCGTCATCCGGAGGTCAAG+TGG | 0.482409 | tig0019143:-65286 | Msa1370740:CDS |
| CCTTGTCGAAGAGTGGCAAC+TGG | 0.486019 | tig0019143:+65132 | None:intergenic |
| TGACCTGGACTTGGGAGGGA+TGG | 0.491935 | tig0019143:-64549 | Msa1370740:CDS |
| GGAGGTCAAGTGGGCTCAAA+GGG | 0.493027 | tig0019143:-65276 | Msa1370740:CDS |
| TGCAAAAGGCAGAGGATGAA+TGG | 0.496195 | tig0019143:-64762 | Msa1370740:CDS |
| ACTATCGTACTTCAACTTGA+AGG | 0.498116 | tig0019143:+63103 | None:intergenic |
| ACAAGAGGGTAATGATAATG+AGG | 0.504951 | tig0019143:-63354 | Msa1370740:CDS |
| GCCAGCTTGGTCTCCAACCG+TGG | 0.507840 | tig0019143:+63325 | None:intergenic |
| CAGAGGATGAATGGTGGAAA+AGG | 0.507991 | tig0019143:-64753 | Msa1370740:CDS |
| CAGTTTAAGATCTTATACTC+AGG | 0.510705 | tig0019143:-63258 | Msa1370740:three_prime_UTR |
| AATCCATCCCTCCCAAGTCC+AGG | 0.516889 | tig0019143:+64546 | None:intergenic |
| CTCGGTGACCTGGACTTGGG+AGG | 0.517191 | tig0019143:-64554 | Msa1370740:CDS |
| CAATCAACTTTCACATAATG+TGG | 0.527025 | tig0019143:+64706 | None:intergenic |
| TTTGACGACGGTGATGATGA+AGG | 0.527145 | tig0019143:-64401 | Msa1370740:intron |
| CGGAGGTCAAGTGGGCTCAA+AGG | 0.538850 | tig0019143:-65277 | Msa1370740:CDS |
| TCGGTGACCTGGACTTGGGA+GGG | 0.538949 | tig0019143:-64553 | Msa1370740:CDS |
| AATGAGGGAGGTTCCACGGT+TGG | 0.540422 | tig0019143:-63338 | Msa1370740:CDS |
| TCCACGGTTGGAGACCAAGC+TGG | 0.546944 | tig0019143:-63326 | Msa1370740:CDS |
| AACGAGGTACAACGCATACA+AGG | 0.548721 | tig0019143:-66195 | Msa1370740:CDS |
| CTGTGTAGTGCAAAAGGCAG+AGG | 0.555658 | tig0019143:-64770 | Msa1370740:CDS |
| TTTGTGCTGCAGCAATTTGA+GGG | 0.567193 | tig0019143:-64446 | Msa1370740:intron |
| AAAATTAACGTAGGAGTGAG+AGG | 0.580252 | tig0019143:-64799 | Msa1370740:CDS |
| GGGTGATGATGCAGTGGGTG+CGG | 0.586506 | tig0019143:-64426 | Msa1370740:CDS |
| GGTCTCGGTGACCTGGACTT+GGG | 0.589648 | tig0019143:-64557 | Msa1370740:CDS |
| CATTAGCTTGTATTATGATG+AGG | 0.593709 | tig0019143:-63137 | Msa1370740:three_prime_UTR |
| AAAAGGTTACTGAAAGCAGA+AGG | 0.595204 | tig0019143:-64736 | Msa1370740:CDS |
| TGATAATGAGGGAGGTTCCA+CGG | 0.595705 | tig0019143:-63342 | Msa1370740:CDS |
| TCGTCATCCGGAGGTCAAGT+GGG | 0.596383 | tig0019143:-65285 | Msa1370740:CDS |
| CAAGAGGGTAATGATAATGA+GGG | 0.603330 | tig0019143:-63353 | Msa1370740:CDS |
| CTTCGACAAGGTTAATGTAG+AGG | 0.606463 | tig0019143:-65120 | Msa1370740:intron |
| ACATTAACCTTGTCGAAGAG+TGG | 0.607273 | tig0019143:+65125 | None:intergenic |
| GTGGATGAAGATGAAGATGC+GGG | 0.610763 | tig0019143:-64673 | Msa1370740:intron |
| CCAGTTGCCACTCTTCGACA+AGG | 0.617754 | tig0019143:-65132 | Msa1370740:CDS |
| GTGGCAACTGGAGCTCATAG+AGG | 0.620616 | tig0019143:+65144 | None:intergenic |
| GTGGTCTTCAGCACCAGCAG+TGG | 0.621573 | tig0019143:+65166 | None:intergenic |
| CAGGAGAGCAAAATTAACGT+AGG | 0.633027 | tig0019143:-64808 | Msa1370740:CDS |
| TCAACTTTCACATAATGTGG+AGG | 0.635270 | tig0019143:+64709 | None:intergenic |
| GCTTGAAGCAGCTTCCTGGA+CGG | 0.652191 | tig0019143:+63295 | None:intergenic |
| AAAGTGAACCTTACTCCAGA+CGG | 0.655853 | tig0019143:-65206 | Msa1370740:CDS |
| GCAACTGGAGCTCATAGAGG+TGG | 0.662772 | tig0019143:+65147 | None:intergenic |
| GGTGGATGAAGATGAAGATG+CGG | 0.663693 | tig0019143:-64674 | Msa1370740:CDS |
| ATTTGAGGGTGATGATGCAG+TGG | 0.664488 | tig0019143:-64432 | Msa1370740:CDS |
| AAAGGTTACTGAAAGCAGAA+GGG | 0.668010 | tig0019143:-64735 | Msa1370740:CDS |
| TGAATGCAGTCGTCATCCGG+AGG | 0.670112 | tig0019143:-65294 | Msa1370740:intron |
| AGTTGATTGGGATAAATGGG+TGG | 0.672477 | tig0019143:-64692 | Msa1370740:CDS |
| GAGGGTAATGATAATGAGGG+AGG | 0.683148 | tig0019143:-63350 | Msa1370740:CDS |
| TTTGAGGGTGATGATGCAGT+GGG | 0.686057 | tig0019143:-64431 | Msa1370740:CDS |
| TATTTATTGAAGGAAAGACA+CGG | 0.700279 | tig0019143:-63064 | Msa1370740:three_prime_UTR |
| AAAAGGCAGAGGATGAATGG+TGG | 0.737688 | tig0019143:-64759 | Msa1370740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTGTTAAATTTATTT+TGG | - | tig0019143:63708-63727 | Msa1370740:intron | 10.0% |
| !!! | TTCATTTTTATGTTAAAATT+AGG | - | tig0019143:63852-63871 | Msa1370740:intron | 10.0% |
| !! | AATTTAACAAAAATGTTTCA+TGG | + | tig0019143:63703-63722 | None:intergenic | 15.0% |
| !! | TTTCCAAGAATAAATTAATA+CGG | + | tig0019143:65154-65173 | None:intergenic | 15.0% |
| !! | TTATTCTTGGAAAATTAAAT+AGG | - | tig0019143:65161-65180 | Msa1370740:CDS | 15.0% |
| !! | TTTCTTTAATCTTAAACAAA+CGG | - | tig0019143:65625-65644 | Msa1370740:intron | 15.0% |
| !! | TGTGAATAGTTTAATTGAAA+TGG | - | tig0019143:63338-63357 | Msa1370740:CDS | 20.0% |
| !! | AATTGTAACTATCAAGAATT+GGG | - | tig0019143:63389-63408 | Msa1370740:intron | 20.0% |
| !! | TAGATGGTTAATTCAATTTA+TGG | - | tig0019143:63526-63545 | Msa1370740:intron | 20.0% |
| !!! | TTTTATGTTAAAATTAGGCA+TGG | - | tig0019143:63857-63876 | Msa1370740:intron | 20.0% |
| !! | ACAGTTTATGATAAAAGATT+TGG | - | tig0019143:63906-63925 | Msa1370740:intron | 20.0% |
| !!! | TTTATGATAAAAGATTTGGT+GGG | - | tig0019143:63910-63929 | Msa1370740:intron | 20.0% |
| !! | TTAGAATGAATATGAAACTA+AGG | + | tig0019143:64296-64315 | None:intergenic | 20.0% |
| !!! | TGTAACTAATTTTCTTGTTA+AGG | - | tig0019143:64329-64348 | Msa1370740:intron | 20.0% |
| !!! | TTAGTTTTTCCAAGTTATAA+AGG | - | tig0019143:64643-64662 | Msa1370740:intron | 20.0% |
| !!! | TAGTTTTTCCAAGTTATAAA+GGG | - | tig0019143:64644-64663 | Msa1370740:intron | 20.0% |
| !! | TAAAAATACCCTTTATAACT+TGG | + | tig0019143:64655-64674 | None:intergenic | 20.0% |
| !! | ATAATACAAGCTAATGTTTA+GGG | + | tig0019143:66122-66141 | None:intergenic | 20.0% |
| !! | TTGAGATGTTTATTTATTGA+AGG | - | tig0019143:66189-66208 | Msa1370740:CDS | 20.0% |
| !!! | ATCTGGATTTTCTATATTTT+TGG | - | tig0019143:66223-66242 | Msa1370740:CDS | 20.0% |
| !!! | TTAGGTGTTTTTGTTTCATA+TGG | - | tig0019143:63252-63271 | Msa1370740:three_prime_UTR | 25.0% |
| ! | CAATTAAACTATTCACAGTT+AGG | + | tig0019143:63335-63354 | None:intergenic | 25.0% |
| ! | GAATTGTAACTATCAAGAAT+TGG | - | tig0019143:63388-63407 | Msa1370740:intron | 25.0% |
| ! | ATTGTAACTATCAAGAATTG+GGG | - | tig0019143:63390-63409 | Msa1370740:intron | 25.0% |
| !!! | TATTTTAAACGTGATTAACC+AGG | + | tig0019143:63485-63504 | None:intergenic | 25.0% |
| ! | ACACTGAAAATTGTGAAATT+GGG | + | tig0019143:63592-63611 | None:intergenic | 25.0% |
| !!! | ATTTTCTAGTGTCTATTCAA+AGG | - | tig0019143:63746-63765 | Msa1370740:intron | 25.0% |
| ! | TCTCATTCAATTCATGTAAA+GGG | + | tig0019143:63774-63793 | None:intergenic | 25.0% |
| ! | TTCTCATTCAATTCATGTAA+AGG | + | tig0019143:63775-63794 | None:intergenic | 25.0% |
| ! | ATGAATTGAATGAGAATTGA+TGG | - | tig0019143:63779-63798 | Msa1370740:intron | 25.0% |
| ! | GTTTATGATAAAAGATTTGG+TGG | - | tig0019143:63909-63928 | Msa1370740:intron | 25.0% |
| ! | GAGAAAACATTTCTAATTCA+TGG | - | tig0019143:64167-64186 | Msa1370740:intron | 25.0% |
| !! | TTTTCCAATGAGTTAAATCA+TGG | - | tig0019143:64226-64245 | Msa1370740:intron | 25.0% |
| !! | ACATTATGTGAAAGTTGATT+GGG | - | tig0019143:64559-64578 | Msa1370740:CDS | 25.0% |
| ! | TACTTGACTATTATAAAGCA+TGG | - | tig0019143:64938-64957 | Msa1370740:intron | 25.0% |
| ! | TTGCATTTGTAGATTACATT+GGG | - | tig0019143:64996-65015 | Msa1370740:intron | 25.0% |
| ! | ATATCTAATGGTTTACTCTT+AGG | - | tig0019143:65114-65133 | Msa1370740:intron | 25.0% |
| ! | TATCTAATGGTTTACTCTTA+GGG | - | tig0019143:65115-65134 | Msa1370740:intron | 25.0% |
| ! | GAAAATTGAAATTGACTGTA+GGG | - | tig0019143:65235-65254 | Msa1370740:CDS | 25.0% |
| ! | AATAACTTAATCAGTTTCAC+TGG | + | tig0019143:65333-65352 | None:intergenic | 25.0% |
| !!! | TGTCAATTTTAACTTTTGGA+TGG | + | tig0019143:65770-65789 | None:intergenic | 25.0% |
| !!! | GGAATGTCAATTTTAACTTT+TGG | + | tig0019143:65774-65793 | None:intergenic | 25.0% |
| ! | ATATGACAATTAAGTTCCTT+AGG | + | tig0019143:65828-65847 | None:intergenic | 25.0% |
| ! | GAACTTAATTGTCATATTGT+TGG | - | tig0019143:65831-65850 | Msa1370740:intron | 25.0% |
| ! | CATAATACAAGCTAATGTTT+AGG | + | tig0019143:66123-66142 | None:intergenic | 25.0% |
| ! | TATTTATTGAAGGAAAGACA+CGG | - | tig0019143:66199-66218 | Msa1370740:CDS | 25.0% |
| CTTCTCTCAAACAAAAAATG+AGG | - | tig0019143:63124-63143 | Msa1370740:three_prime_UTR | 30.0% | |
| ! | CTGAAAAATTGTAAAAGTGC+AGG | + | tig0019143:63175-63194 | None:intergenic | 30.0% |
| ACTATTCACAGTTAGGATTT+AGG | + | tig0019143:63328-63347 | None:intergenic | 30.0% | |
| TTGTAACTATCAAGAATTGG+GGG | - | tig0019143:63391-63410 | Msa1370740:intron | 30.0% | |
| AATTAGTTCAGTTGAGTAGA+TGG | - | tig0019143:63510-63529 | Msa1370740:intron | 30.0% | |
| CACTGAAAATTGTGAAATTG+GGG | + | tig0019143:63591-63610 | None:intergenic | 30.0% | |
| CACACTGAAAATTGTGAAAT+TGG | + | tig0019143:63593-63612 | None:intergenic | 30.0% | |
| GTTAATTGCATGCATAATTG+TGG | + | tig0019143:63648-63667 | None:intergenic | 30.0% | |
| TATGTTAAAATTAGGCATGG+TGG | - | tig0019143:63860-63879 | Msa1370740:intron | 30.0% | |
| ATGTTAAAATTAGGCATGGT+GGG | - | tig0019143:63861-63880 | Msa1370740:intron | 30.0% | |
| CAAGCATTAGAAAATCAGAT+AGG | + | tig0019143:63951-63970 | None:intergenic | 30.0% | |
| !!! | ACTTTTGCATTTTTGGAATC+CGG | + | tig0019143:64042-64061 | None:intergenic | 30.0% |
| !! | AAGGTTCACTTTTGCATTTT+TGG | + | tig0019143:64049-64068 | None:intergenic | 30.0% |
| TTCTAATTCATGGATAGCAT+TGG | - | tig0019143:64177-64196 | Msa1370740:intron | 30.0% | |
| AATGCCATGATTTAACTCAT+TGG | + | tig0019143:64233-64252 | None:intergenic | 30.0% | |
| TAATACATGCATGCACTTAT+GGG | - | tig0019143:64256-64275 | Msa1370740:intron | 30.0% | |
| CAATCAACTTTCACATAATG+TGG | + | tig0019143:64560-64579 | None:intergenic | 30.0% | |
| ! | CACATTATGTGAAAGTTGAT+TGG | - | tig0019143:64558-64577 | Msa1370740:CDS | 30.0% |
| ! | TGAAAGTTGATTGGGATAAA+TGG | - | tig0019143:64567-64586 | Msa1370740:intron | 30.0% |
| ! | GAAAGTTGATTGGGATAAAT+GGG | - | tig0019143:64568-64587 | Msa1370740:intron | 30.0% |
| CAACTGATTGTCTGTTTATT+AGG | - | tig0019143:64685-64704 | Msa1370740:CDS | 30.0% | |
| ATTGTCTGTTTATTAGGTCT+CGG | - | tig0019143:64691-64710 | Msa1370740:CDS | 30.0% | |
| CAAACAACATTACTAAGAGA+AGG | + | tig0019143:64785-64804 | None:intergenic | 30.0% | |
| CTGCAGCACAAAAATTAATT+AGG | + | tig0019143:64809-64828 | None:intergenic | 30.0% | |
| CTATTATAAAGCATGGTTGA+CGG | - | tig0019143:64945-64964 | Msa1370740:intron | 30.0% | |
| CTTGCATTTGTAGATTACAT+TGG | - | tig0019143:64995-65014 | Msa1370740:intron | 30.0% | |
| ! | ACTGCTATTTAAGATACTCT+TGG | - | tig0019143:65025-65044 | Msa1370740:intron | 30.0% |
| ! | CTGCTATTTAAGATACTCTT+GGG | - | tig0019143:65026-65045 | Msa1370740:intron | 30.0% |
| ATCTAATGGTTTACTCTTAG+GGG | - | tig0019143:65116-65135 | Msa1370740:intron | 30.0% | |
| AGGCCGTATTAATTTATTCT+TGG | - | tig0019143:65148-65167 | Msa1370740:CDS | 30.0% | |
| !! | TTTCATTTCAGTTGATGAGA+TGG | - | tig0019143:65195-65214 | Msa1370740:CDS | 30.0% |
| GGAAAATTGAAATTGACTGT+AGG | - | tig0019143:65234-65253 | Msa1370740:CDS | 30.0% | |
| !! | ATGTTTTAGGCTAAAGTTTG+TGG | - | tig0019143:65263-65282 | Msa1370740:CDS | 30.0% |
| TTAAAGCTATTCTATCACTC+AGG | + | tig0019143:65536-65555 | None:intergenic | 30.0% | |
| !! | GTGATAGAATAGCTTTAAAC+TGG | - | tig0019143:65538-65557 | Msa1370740:intron | 30.0% |
| ACTATGATCAAGATCAGATT+TGG | + | tig0019143:65568-65587 | None:intergenic | 30.0% | |
| TCAAAACCTGAAAAACAAGA+GGG | - | tig0019143:65895-65914 | Msa1370740:intron | 30.0% | |
| ! | CAGTTTAAGATCTTATACTC+AGG | - | tig0019143:66005-66024 | Msa1370740:intron | 30.0% |
| !! | CATTAGCTTGTATTATGATG+AGG | - | tig0019143:66126-66145 | Msa1370740:intron | 30.0% |
| TCATCAAAAATCCCAAAACG+AGG | - | tig0019143:63052-63071 | Msa1370740:three_prime_UTR | 35.0% | |
| ! | GTTTCTTTTGTCTCTGACAA+GGG | - | tig0019143:63090-63109 | Msa1370740:three_prime_UTR | 35.0% |
| GTTCGATGCTTAGTTGTATT+AGG | - | tig0019143:63234-63253 | Msa1370740:three_prime_UTR | 35.0% | |
| !! | GGTGTTTTTGTTTCATATGG+TGG | - | tig0019143:63255-63274 | Msa1370740:three_prime_UTR | 35.0% |
| ! | GTTGGAGGTGTAGAAAAAAT+GGG | + | tig0019143:63461-63480 | None:intergenic | 35.0% |
| ! | TGTTGGAGGTGTAGAAAAAA+TGG | + | tig0019143:63462-63481 | None:intergenic | 35.0% |
| GGTTAACTCAGTTGAGTATA+TGG | + | tig0019143:63627-63646 | None:intergenic | 35.0% | |
| TGCAATTAACTACTTGTCGA+AGG | - | tig0019143:63658-63677 | Msa1370740:intron | 35.0% | |
| CTAATACATGCATGCACTTA+TGG | - | tig0019143:64255-64274 | Msa1370740:intron | 35.0% | |
| TCAATCTCTGCTATTGTTTC+AGG | - | tig0019143:64436-64455 | Msa1370740:CDS | 35.0% | |
| AAAATTAACGTAGGAGTGAG+AGG | - | tig0019143:64464-64483 | Msa1370740:intron | 35.0% | |
| CATATTCTGTGTAGTGCAAA+AGG | - | tig0019143:64487-64506 | Msa1370740:intron | 35.0% | |
| AAAAGGTTACTGAAAGCAGA+AGG | - | tig0019143:64527-64546 | Msa1370740:intron | 35.0% | |
| AAAGGTTACTGAAAGCAGAA+GGG | - | tig0019143:64528-64547 | Msa1370740:intron | 35.0% | |
| TCAACTTTCACATAATGTGG+AGG | + | tig0019143:64557-64576 | None:intergenic | 35.0% | |
| CATTTGTAGATTACATTGGG+TGG | - | tig0019143:64999-65018 | Msa1370740:intron | 35.0% | |
| GGAAAACTTTCATCTTGCAT+TGG | - | tig0019143:65047-65066 | Msa1370740:intron | 35.0% | |
| !! | TTTCATCTTGCATTGGTTGA+TGG | - | tig0019143:65054-65073 | Msa1370740:intron | 35.0% |
| !!! | TCAGTTGATGAGATGGTTTT+TGG | - | tig0019143:65202-65221 | Msa1370740:CDS | 35.0% |
| !!! | GATGGTTTTTGGTAGACATT+TGG | - | tig0019143:65213-65232 | Msa1370740:CDS | 35.0% |
| ! | AAAGTTTGTGGCTTTTCTAG+TGG | - | tig0019143:65275-65294 | Msa1370740:CDS | 35.0% |
| ! | TGATCAAGATCAGATTTGGT+GGG | + | tig0019143:65564-65583 | None:intergenic | 35.0% |
| ATGATCAAGATCAGATTTGG+TGG | + | tig0019143:65565-65584 | None:intergenic | 35.0% | |
| AAACGGTAATAGATGGTGAA+GGG | + | tig0019143:65652-65671 | None:intergenic | 35.0% | |
| TAAACGGTAATAGATGGTGA+AGG | + | tig0019143:65653-65672 | None:intergenic | 35.0% | |
| GTCACTTAAACGGTAATAGA+TGG | + | tig0019143:65659-65678 | None:intergenic | 35.0% | |
| AGTCGTAAGAGTCACTTAAA+CGG | + | tig0019143:65669-65688 | None:intergenic | 35.0% | |
| GTCAAAACCTGAAAAACAAG+AGG | - | tig0019143:65894-65913 | Msa1370740:intron | 35.0% | |
| !!! | TCATTACCCTCTTGTTTTTC+AGG | + | tig0019143:65904-65923 | None:intergenic | 35.0% |
| ! | ACAAGAGGGTAATGATAATG+AGG | - | tig0019143:65909-65928 | Msa1370740:intron | 35.0% |
| ! | CAAGAGGGTAATGATAATGA+GGG | - | tig0019143:65910-65929 | Msa1370740:intron | 35.0% |
| ACTATCGTACTTCAACTTGA+AGG | + | tig0019143:66163-66182 | None:intergenic | 35.0% | |
| ! | TATGCGTTGTACCTCGTTTT+GGG | + | tig0019143:63066-63085 | None:intergenic | 40.0% |
| ! | GGTTTCTTTTGTCTCTGACA+AGG | - | tig0019143:63089-63108 | Msa1370740:three_prime_UTR | 40.0% |
| AAACGTGATTAACCAGGTGT+TGG | + | tig0019143:63479-63498 | None:intergenic | 40.0% | |
| ! | TAACTACTTGTCGAAGGTGT+AGG | - | tig0019143:63664-63683 | Msa1370740:intron | 40.0% |
| CAGTGCTAATTGAACAGTCA+TGG | - | tig0019143:63803-63822 | Msa1370740:intron | 40.0% | |
| AAAGTGAACCTTACTCCAGA+CGG | - | tig0019143:64057-64076 | Msa1370740:intron | 40.0% | |
| GAAAAAGTCAAAACACCGTC+TGG | + | tig0019143:64075-64094 | None:intergenic | 40.0% | |
| ACATTAACCTTGTCGAAGAG+TGG | + | tig0019143:64141-64160 | None:intergenic | 40.0% | |
| CTTCGACAAGGTTAATGTAG+AGG | - | tig0019143:64143-64162 | Msa1370740:intron | 40.0% | |
| CAGGAGAGCAAAATTAACGT+AGG | - | tig0019143:64455-64474 | Msa1370740:intron | 40.0% | |
| AGTTGATTGGGATAAATGGG+TGG | - | tig0019143:64571-64590 | Msa1370740:intron | 40.0% | |
| ! | TTTTGTGCTGCAGCAATTTG+AGG | - | tig0019143:64816-64835 | Msa1370740:intron | 40.0% |
| TTTGTGCTGCAGCAATTTGA+GGG | - | tig0019143:64817-64836 | Msa1370740:intron | 40.0% | |
| CCAGACACAAAAGATGAAAC+AGG | + | tig0019143:65086-65105 | None:intergenic | 40.0% | |
| ! | CCTGTTTCATCTTTTGTGTC+TGG | - | tig0019143:65083-65102 | Msa1370740:intron | 40.0% |
| CTGGCTGACACTATATCTAA+TGG | - | tig0019143:65102-65121 | Msa1370740:intron | 40.0% | |
| ! | CTGTAGGGCAACTATGTTTT+AGG | - | tig0019143:65250-65269 | Msa1370740:CDS | 40.0% |
| ATATCATATCTTACCCCACC+TGG | - | tig0019143:65471-65490 | Msa1370740:intron | 40.0% | |
| TATCACTCAGGAATCCAGAA+TGG | + | tig0019143:65524-65543 | None:intergenic | 40.0% | |
| ! | GAGGCACTATAAACAACAGT+AGG | + | tig0019143:65795-65814 | None:intergenic | 40.0% |
| AGTCTGACTGTAGTATCGTT+TGG | - | tig0019143:66058-66077 | Msa1370740:intron | 40.0% | |
| ! | GTATGCGTTGTACCTCGTTT+TGG | + | tig0019143:63067-63086 | None:intergenic | 45.0% |
| AACGAGGTACAACGCATACA+AGG | - | tig0019143:63068-63087 | Msa1370740:three_prime_UTR | 45.0% | |
| ! | TTTTCTACACCTCCAACACC+TGG | - | tig0019143:63464-63483 | Msa1370740:intron | 45.0% |
| ! | GTCGAAGGTGTAGGAAAAGT+TGG | - | tig0019143:63673-63692 | Msa1370740:intron | 45.0% |
| CTATGTCACGATTCAGTTGC+CGG | - | tig0019143:64020-64039 | Msa1370740:intron | 45.0% | |
| ! | TCAAAACACCGTCTGGAGTA+AGG | + | tig0019143:64068-64087 | None:intergenic | 45.0% |
| !! | TTGACTTTTTCTGCCACTGC+TGG | - | tig0019143:64084-64103 | Msa1370740:intron | 45.0% |
| TGCAAAAGGCAGAGGATGAA+TGG | - | tig0019143:64501-64520 | Msa1370740:intron | 45.0% | |
| AAAAGGCAGAGGATGAATGG+TGG | - | tig0019143:64504-64523 | Msa1370740:intron | 45.0% | |
| ! | CAGAGGATGAATGGTGGAAA+AGG | - | tig0019143:64510-64529 | Msa1370740:intron | 45.0% |
| GGTGGATGAAGATGAAGATG+CGG | - | tig0019143:64589-64608 | Msa1370740:intron | 45.0% | |
| GTGGATGAAGATGAAGATGC+GGG | - | tig0019143:64590-64609 | Msa1370740:intron | 45.0% | |
| TTTATTAGGTCTCGGTGACC+TGG | - | tig0019143:64699-64718 | Msa1370740:CDS | 45.0% | |
| ! | ATTTGAGGGTGATGATGCAG+TGG | - | tig0019143:64831-64850 | Msa1370740:intron | 45.0% |
| ! | TTTGAGGGTGATGATGCAGT+GGG | - | tig0019143:64832-64851 | Msa1370740:intron | 45.0% |
| ! | TTTGACGACGGTGATGATGA+AGG | - | tig0019143:64862-64881 | Msa1370740:intron | 45.0% |
| GACGGTACATGCATATGTTG+TGG | - | tig0019143:64963-64982 | Msa1370740:intron | 45.0% | |
| CAGGTTTGATTACCTGCATG+AGG | - | tig0019143:65441-65460 | Msa1370740:intron | 45.0% | |
| AATCCAGAATGGTGCAACTG+GGG | + | tig0019143:65513-65532 | None:intergenic | 45.0% | |
| GAATCCAGAATGGTGCAACT+GGG | + | tig0019143:65514-65533 | None:intergenic | 45.0% | |
| TTCCTTAGGTCTACAGCTTG+AGG | + | tig0019143:65814-65833 | None:intergenic | 45.0% | |
| ! | GAGGGTAATGATAATGAGGG+AGG | - | tig0019143:65913-65932 | Msa1370740:intron | 45.0% |
| ! | TGATAATGAGGGAGGTTCCA+CGG | - | tig0019143:65921-65940 | Msa1370740:intron | 45.0% |
| TGAAGGAAAGACACGGTATC+TGG | - | tig0019143:66206-66225 | Msa1370740:CDS | 45.0% | |
| !! | CGTGATTAACCAGGTGTTGG+AGG | + | tig0019143:63476-63495 | None:intergenic | 50.0% |
| GCTTGAATGCAGTCGTCATC+CGG | - | tig0019143:63966-63985 | Msa1370740:intron | 50.0% | |
| CTGTGTAGTGCAAAAGGCAG+AGG | - | tig0019143:64493-64512 | Msa1370740:intron | 50.0% | |
| ! | CTTGGGAGGGATGGATTTCT+CGG | - | tig0019143:64723-64742 | Msa1370740:CDS | 50.0% |
| AGTGAACTAGTAGCCTACGC+AGG | - | tig0019143:65422-65441 | Msa1370740:intron | 50.0% | |
| GCAGGTAATCAAACCTGCGT+AGG | + | tig0019143:65438-65457 | None:intergenic | 50.0% | |
| GATATCAAGCAGCCTCATGC+AGG | + | tig0019143:65456-65475 | None:intergenic | 50.0% | |
| CATATCTTACCCCACCTGGA+TGG | - | tig0019143:65475-65494 | Msa1370740:intron | 50.0% | |
| ATCCAGAATGGTGCAACTGG+GGG | + | tig0019143:65512-65531 | None:intergenic | 50.0% | |
| GGAATCCAGAATGGTGCAAC+TGG | + | tig0019143:65515-65534 | None:intergenic | 50.0% | |
| TGCCTCAAGCTGTAGACCTA+AGG | - | tig0019143:65809-65828 | Msa1370740:intron | 50.0% | |
| ATGTGCTTGAAGCAGCTTCC+TGG | + | tig0019143:65975-65994 | None:intergenic | 50.0% | |
| TGAATGCAGTCGTCATCCGG+AGG | - | tig0019143:63969-63988 | Msa1370740:intron | 55.0% | |
| TCGTCATCCGGAGGTCAAGT+GGG | - | tig0019143:63978-63997 | Msa1370740:intron | 55.0% | |
| CTTTGAGCCCACTTGACCTC+CGG | + | tig0019143:63988-64007 | None:intergenic | 55.0% | |
| ! | GGAGGTCAAGTGGGCTCAAA+GGG | - | tig0019143:63987-64006 | Msa1370740:intron | 55.0% |
| GCAACTGGAGCTCATAGAGG+TGG | + | tig0019143:64119-64138 | None:intergenic | 55.0% | |
| GTGGCAACTGGAGCTCATAG+AGG | + | tig0019143:64122-64141 | None:intergenic | 55.0% | |
| CCTTGTCGAAGAGTGGCAAC+TGG | + | tig0019143:64134-64153 | None:intergenic | 55.0% | |
| CCAGTTGCCACTCTTCGACA+AGG | - | tig0019143:64131-64150 | Msa1370740:intron | 55.0% | |
| AATCCATCCCTCCCAAGTCC+AGG | + | tig0019143:64720-64739 | None:intergenic | 55.0% | |
| !! | GTGGGTGCGGATTTTGACGA+CGG | - | tig0019143:64850-64869 | Msa1370740:intron | 55.0% |
| ! | ACTCTTAGGGGCGTGTCTGT+AGG | - | tig0019143:65128-65147 | Msa1370740:CDS | 55.0% |
| AACACGGTAGCCATCCAGGT+GGG | + | tig0019143:65488-65507 | None:intergenic | 55.0% | |
| TAACACGGTAGCCATCCAGG+TGG | + | tig0019143:65489-65508 | None:intergenic | 55.0% | |
| TGGTGCAACTGGGGGTAACA+CGG | + | tig0019143:65504-65523 | None:intergenic | 55.0% | |
| TACCCCCAGTTGCACCATTC+TGG | - | tig0019143:65507-65526 | Msa1370740:intron | 55.0% | |
| AATGAGGGAGGTTCCACGGT+TGG | - | tig0019143:65925-65944 | Msa1370740:intron | 55.0% | |
| GCTTGAAGCAGCTTCCTGGA+CGG | + | tig0019143:65971-65990 | None:intergenic | 55.0% | |
| GTCGTCATCCGGAGGTCAAG+TGG | - | tig0019143:63977-63996 | Msa1370740:intron | 60.0% | |
| ! | CGGAGGTCAAGTGGGCTCAA+AGG | - | tig0019143:63986-64005 | Msa1370740:intron | 60.0% |
| GTGGTCTTCAGCACCAGCAG+TGG | + | tig0019143:64100-64119 | None:intergenic | 60.0% | |
| AGGTCTCGGTGACCTGGACT+TGG | - | tig0019143:64705-64724 | Msa1370740:CDS | 60.0% | |
| GGTCTCGGTGACCTGGACTT+GGG | - | tig0019143:64706-64725 | Msa1370740:CDS | 60.0% | |
| TCGGTGACCTGGACTTGGGA+GGG | - | tig0019143:64710-64729 | Msa1370740:CDS | 60.0% | |
| TGACCTGGACTTGGGAGGGA+TGG | - | tig0019143:64714-64733 | Msa1370740:CDS | 60.0% | |
| ! | GGGTGATGATGCAGTGGGTG+CGG | - | tig0019143:64837-64856 | Msa1370740:intron | 60.0% |
| ACACGGTAGCCATCCAGGTG+GGG | + | tig0019143:65487-65506 | None:intergenic | 60.0% | |
| GGGTAACACGGTAGCCATCC+AGG | + | tig0019143:65492-65511 | None:intergenic | 60.0% | |
| TCCACGGTTGGAGACCAAGC+TGG | - | tig0019143:65937-65956 | Msa1370740:intron | 60.0% | |
| CTCGGTGACCTGGACTTGGG+AGG | - | tig0019143:64709-64728 | Msa1370740:CDS | 65.0% | |
| GCCAGCTTGGTCTCCAACCG+TGG | + | tig0019143:65941-65960 | None:intergenic | 65.0% | |
| GGACGGTGCTCTTGCCAGCT+TGG | + | tig0019143:65954-65973 | None:intergenic | 65.0% | |
| !! | AGCTGGCAAGAGCACCGTCC+AGG | - | tig0019143:65954-65973 | Msa1370740:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019143 | gene | 63012 | 66273 | 63012 | ID=Msa1370740;Name=Msa1370740 |
| tig0019143 | mRNA | 63012 | 66273 | 63012 | ID=Msa1370740-mRNA-1;Parent=Msa1370740;Name=Msa1370740-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|1|1|1|1|6|277|226 |
| tig0019143 | exon | 63012 | 63401 | 63012 | ID=Msa1370740-mRNA-1:exon:1905;Parent=Msa1370740-mRNA-1 |
| tig0019143 | exon | 64402 | 64456 | 64402 | ID=Msa1370740-mRNA-1:exon:1904;Parent=Msa1370740-mRNA-1 |
| tig0019143 | exon | 64541 | 64578 | 64541 | ID=Msa1370740-mRNA-1:exon:1903;Parent=Msa1370740-mRNA-1 |
| tig0019143 | exon | 64674 | 64827 | 64674 | ID=Msa1370740-mRNA-1:exon:1902;Parent=Msa1370740-mRNA-1 |
| tig0019143 | exon | 65121 | 65307 | 65121 | ID=Msa1370740-mRNA-1:exon:1901;Parent=Msa1370740-mRNA-1 |
| tig0019143 | exon | 66140 | 66273 | 66140 | ID=Msa1370740-mRNA-1:exon:1900;Parent=Msa1370740-mRNA-1 |
| tig0019143 | CDS | 66140 | 66273 | 66140 | ID=Msa1370740-mRNA-1:cds;Parent=Msa1370740-mRNA-1 |
| tig0019143 | CDS | 65121 | 65307 | 65121 | ID=Msa1370740-mRNA-1:cds;Parent=Msa1370740-mRNA-1 |
| tig0019143 | CDS | 64674 | 64827 | 64674 | ID=Msa1370740-mRNA-1:cds;Parent=Msa1370740-mRNA-1 |
| tig0019143 | CDS | 64541 | 64578 | 64541 | ID=Msa1370740-mRNA-1:cds;Parent=Msa1370740-mRNA-1 |
| tig0019143 | CDS | 64402 | 64456 | 64402 | ID=Msa1370740-mRNA-1:cds;Parent=Msa1370740-mRNA-1 |
| tig0019143 | CDS | 63289 | 63401 | 63289 | ID=Msa1370740-mRNA-1:cds;Parent=Msa1370740-mRNA-1 |
| tig0019143 | three_prime_UTR | 63012 | 63288 | 63012 | ID=Msa1370740-mRNA-1:three_prime_utr;Parent=Msa1370740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
