Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129060 | XP_003591549.2 | 96.175 | 183 | 3 | 1 | 1 | 179 | 1 | 183 | 2.17e-122 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129060 | sp|P0C8Z0|Y8359_ORYSI | 64.615 | 130 | 40 | 2 | 1 | 126 | 1 | 128 | 1.04e-55 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129060 | G7IF81 | 96.175 | 183 | 3 | 1 | 1 | 179 | 1 | 183 | 1.04e-122 | 353 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002490 | Msa0129060 | 0.812471 | 4.170295e-51 | -8.615850e-47 |
| Msa0004860 | Msa0129060 | 0.809805 | 1.578160e-50 | -8.615850e-47 |
| Msa0004920 | Msa0129060 | 0.809613 | 1.735650e-50 | -8.615850e-47 |
| Msa0008090 | Msa0129060 | 0.809749 | 1.622407e-50 | -8.615850e-47 |
| Msa0008410 | Msa0129060 | 0.806807 | 6.875626e-50 | -8.615850e-47 |
| Msa0032260 | Msa0129060 | 0.819319 | 1.236308e-52 | -8.615850e-47 |
| Msa0056470 | Msa0129060 | 0.817395 | 3.371732e-52 | -8.615850e-47 |
| Msa0064350 | Msa0129060 | 0.822317 | 2.527034e-53 | -8.615850e-47 |
| Msa0073480 | Msa0129060 | 0.809637 | 1.715162e-50 | -8.615850e-47 |
| Msa0076000 | Msa0129060 | 0.823713 | 1.194073e-53 | -8.615850e-47 |
| Msa0078650 | Msa0129060 | 0.836677 | 8.131938e-57 | -8.615850e-47 |
| Msa0082280 | Msa0129060 | 0.800588 | 1.343461e-48 | -8.615850e-47 |
| Msa0083070 | Msa0129060 | 0.818852 | 1.578539e-52 | -8.615850e-47 |
| Msa0090360 | Msa0129060 | 0.820103 | 8.185652e-53 | -8.615850e-47 |
| Msa0094470 | Msa0129060 | 0.823177 | 1.593702e-53 | -8.615850e-47 |
| Msa0125540 | Msa0129060 | 0.809871 | 1.527151e-50 | -8.615850e-47 |
| Msa0126370 | Msa0129060 | 0.826680 | 2.375435e-54 | -8.615850e-47 |
| Msa0127310 | Msa0129060 | 0.806942 | 6.436835e-50 | -8.615850e-47 |
| Msa0129060 | Msa0137840 | 0.828157 | 1.050716e-54 | -8.615850e-47 |
| Msa0129060 | Msa0140780 | 0.801861 | 7.373392e-49 | -8.615850e-47 |
| Msa0129060 | Msa0148100 | 0.800493 | 1.404424e-48 | -8.615850e-47 |
| Msa0129060 | Msa0149390 | 0.807434 | 5.064312e-50 | -8.615850e-47 |
| Msa0129060 | Msa0171290 | 0.826453 | 2.690345e-54 | -8.615850e-47 |
| Msa0129060 | Msa0174860 | 0.918482 | 1.475970e-86 | -8.615850e-47 |
| Msa0129060 | Msa0184040 | 0.823146 | 1.620802e-53 | -8.615850e-47 |
| Msa0129060 | Msa0184780 | 0.801663 | 8.095305e-49 | -8.615850e-47 |
| Msa0129060 | Msa0191050 | 0.847217 | 1.330159e-59 | -8.615850e-47 |
| Msa0129060 | Msa0199690 | 0.804365 | 2.237142e-49 | -8.615850e-47 |
| Msa0129060 | Msa0199880 | 0.810731 | 9.962943e-51 | -8.615850e-47 |
| Msa0129060 | Msa0204980 | 0.814763 | 1.305734e-51 | -8.615850e-47 |
| Msa0129060 | Msa0216240 | 0.828703 | 7.758494e-55 | -8.615850e-47 |
| Msa0129060 | Msa0229760 | 0.827623 | 1.412300e-54 | -8.615850e-47 |
| Msa0129060 | Msa0231980 | 0.804194 | 2.428189e-49 | -8.615850e-47 |
| Msa0129060 | Msa0233350 | 0.850875 | 1.279350e-60 | -8.615850e-47 |
| Msa0129060 | Msa0267970 | 0.831336 | 1.768520e-55 | -8.615850e-47 |
| Msa0129060 | Msa0271810 | 0.807399 | 5.152282e-50 | -8.615850e-47 |
| Msa0129060 | Msa0280610 | 0.808320 | 3.282624e-50 | -8.615850e-47 |
| Msa0129060 | Msa0282250 | 0.803107 | 4.082663e-49 | -8.615850e-47 |
| Msa0129060 | Msa0287650 | 0.820410 | 6.961244e-53 | -8.615850e-47 |
| Msa0129060 | Msa0300120 | 0.811085 | 8.350083e-51 | -8.615850e-47 |
| Msa0129060 | Msa0311700 | 0.814964 | 1.177905e-51 | -8.615850e-47 |
| Msa0129060 | Msa0334360 | 0.803418 | 3.519573e-49 | -8.615850e-47 |
| Msa0129060 | Msa0343810 | 0.808486 | 3.025527e-50 | -8.615850e-47 |
| Msa0129060 | Msa0355270 | 0.818078 | 2.365008e-52 | -8.615850e-47 |
| Msa0129060 | Msa0366890 | 0.825888 | 3.667141e-54 | -8.615850e-47 |
| Msa0129060 | Msa0369450 | 0.818029 | 2.426185e-52 | -8.615850e-47 |
| Msa0129060 | Msa0372660 | 0.811828 | 5.760505e-51 | -8.615850e-47 |
| Msa0129060 | Msa0372670 | 0.816565 | 5.180803e-52 | -8.615850e-47 |
| Msa0129060 | Msa0376300 | 0.846739 | 1.797243e-59 | -8.615850e-47 |
| Msa0129060 | Msa0376310 | 0.840637 | 7.711986e-58 | -8.615850e-47 |
| Msa0129060 | Msa0376690 | 0.826221 | 3.054871e-54 | -8.615850e-47 |
| Msa0129060 | Msa0380300 | 0.802929 | 4.442803e-49 | -8.615850e-47 |
| Msa0129060 | Msa0385580 | 0.802624 | 5.135466e-49 | -8.615850e-47 |
| Msa0129060 | Msa0387730 | 0.853229 | 2.742923e-61 | -8.615850e-47 |
| Msa0129060 | Msa0388700 | 0.812287 | 4.574796e-51 | -8.615850e-47 |
| Msa0129060 | Msa0402330 | 0.816002 | 6.920777e-52 | -8.615850e-47 |
| Msa0129060 | Msa0414800 | 0.807425 | 5.086164e-50 | -8.615850e-47 |
| Msa0129060 | Msa0422400 | 0.813181 | 2.914877e-51 | -8.615850e-47 |
| Msa0129060 | Msa0425220 | 0.821783 | 3.360225e-53 | -8.615850e-47 |
| Msa0129060 | Msa0458060 | 0.801731 | 7.839761e-49 | -8.615850e-47 |
| Msa0129060 | Msa0469990 | 0.808914 | 2.450546e-50 | -8.615850e-47 |
| Msa0129060 | Msa0471440 | 0.810371 | 1.191716e-50 | -8.615850e-47 |
| Msa0129060 | Msa0471590 | 0.833530 | 5.058388e-56 | -8.615850e-47 |
| Msa0129060 | Msa0474950 | 0.838676 | 2.496078e-57 | -8.615850e-47 |
| Msa0129060 | Msa0477080 | 0.812711 | 3.694674e-51 | -8.615850e-47 |
| Msa0129060 | Msa0481530 | 0.801564 | 8.485204e-49 | -8.615850e-47 |
| Msa0129060 | Msa0513650 | 0.807715 | 4.414994e-50 | -8.615850e-47 |
| Msa0129060 | Msa0518390 | 0.814899 | 1.217970e-51 | -8.615850e-47 |
| Msa0129060 | Msa0518450 | 0.808350 | 3.234349e-50 | -8.615850e-47 |
| Msa0129060 | Msa0524500 | 0.803123 | 4.050949e-49 | -8.615850e-47 |
| Msa0129060 | Msa0547360 | 0.802720 | 4.906146e-49 | -8.615850e-47 |
| Msa0129060 | Msa0552810 | 0.842468 | 2.538859e-58 | -8.615850e-47 |
| Msa0129060 | Msa0556060 | 0.812296 | 4.554297e-51 | -8.615850e-47 |
| Msa0129060 | Msa0580710 | 0.801205 | 1.004816e-48 | -8.615850e-47 |
| Msa0129060 | Msa0585960 | 0.808405 | 3.148200e-50 | -8.615850e-47 |
| Msa0129060 | Msa0610530 | 0.814002 | 1.922889e-51 | -8.615850e-47 |
| Msa0129060 | Msa0610560 | 0.802819 | 4.680490e-49 | -8.615850e-47 |
| Msa0129060 | Msa0612960 | 0.810864 | 9.326120e-51 | -8.615850e-47 |
| Msa0129060 | Msa0619070 | 0.804097 | 2.544068e-49 | -8.615850e-47 |
| Msa0129060 | Msa0622960 | 0.802862 | 4.586525e-49 | -8.615850e-47 |
| Msa0129060 | Msa0623700 | 0.802085 | 6.631327e-49 | -8.615850e-47 |
| Msa0129060 | Msa0639310 | 0.812473 | 4.165176e-51 | -8.615850e-47 |
| Msa0129060 | Msa0641190 | 0.801337 | 9.444413e-49 | -8.615850e-47 |
| Msa0129060 | Msa0647500 | 0.813485 | 2.499892e-51 | -8.615850e-47 |
| Msa0129060 | Msa0655560 | 0.802325 | 5.918028e-49 | -8.615850e-47 |
| Msa0129060 | Msa0661300 | 0.817924 | 2.562370e-52 | -8.615850e-47 |
| Msa0129060 | Msa0662500 | 0.809749 | 1.622274e-50 | -8.615850e-47 |
| Msa0129060 | Msa0682900 | 0.804826 | 1.792960e-49 | -8.615850e-47 |
| Msa0129060 | Msa0687630 | 0.827584 | 1.443113e-54 | -8.615850e-47 |
| Msa0129060 | Msa0689500 | 0.810762 | 9.812403e-51 | -8.615850e-47 |
| Msa0129060 | Msa0690150 | 0.821390 | 4.141594e-53 | -8.615850e-47 |
| Msa0129060 | Msa0691900 | 0.805909 | 1.063136e-49 | -8.615850e-47 |
| Msa0129060 | Msa0692840 | 0.821104 | 4.820541e-53 | -8.615850e-47 |
| Msa0129060 | Msa0692940 | 0.810386 | 1.182693e-50 | -8.615850e-47 |
| Msa0129060 | Msa0697940 | 0.811212 | 7.836296e-51 | -8.615850e-47 |
| Msa0129060 | Msa0708520 | 0.803449 | 3.467365e-49 | -8.615850e-47 |
| Msa0129060 | Msa0709500 | 0.826318 | 2.896606e-54 | -8.615850e-47 |
| Msa0129060 | Msa0711890 | 0.814225 | 1.717260e-51 | -8.615850e-47 |
| Msa0129060 | Msa0713820 | 0.833417 | 5.398719e-56 | -8.615850e-47 |
| Msa0129060 | Msa0724830 | 0.805390 | 1.366001e-49 | -8.615850e-47 |
| Msa0129060 | Msa0746420 | 0.818379 | 2.021547e-52 | -8.615850e-47 |
| Msa0129060 | Msa0749760 | 0.822179 | 2.721183e-53 | -8.615850e-47 |
| Msa0129060 | Msa0750170 | 0.812036 | 5.188195e-51 | -8.615850e-47 |
| Msa0129060 | Msa0750430 | 0.819213 | 1.307072e-52 | -8.615850e-47 |
| Msa0129060 | Msa0750880 | 0.834463 | 2.953738e-56 | -8.615850e-47 |
| Msa0129060 | Msa0756060 | 0.815000 | 1.156875e-51 | -8.615850e-47 |
| Msa0129060 | Msa0761940 | 0.815386 | 9.493082e-52 | -8.615850e-47 |
| Msa0129060 | Msa0786270 | 0.801914 | 7.191273e-49 | -8.615850e-47 |
| Msa0129060 | Msa0790000 | 0.810697 | 1.013135e-50 | -8.615850e-47 |
| Msa0129060 | Msa0790850 | 0.818255 | 2.155984e-52 | -8.615850e-47 |
| Msa0129060 | Msa0794670 | 0.810432 | 1.156191e-50 | -8.615850e-47 |
| Msa0129060 | Msa0797750 | 0.820914 | 5.331920e-53 | -8.615850e-47 |
| Msa0129060 | Msa0808270 | 0.802071 | 6.674625e-49 | -8.615850e-47 |
| Msa0129060 | Msa0818310 | 0.803091 | 4.112156e-49 | -8.615850e-47 |
| Msa0129060 | Msa0823090 | 0.801054 | 1.079167e-48 | -8.615850e-47 |
| Msa0129060 | Msa0824640 | 0.809076 | 2.262885e-50 | -8.615850e-47 |
| Msa0129060 | Msa0835280 | 0.802555 | 5.307222e-49 | -8.615850e-47 |
| Msa0129060 | Msa0842830 | 0.811044 | 8.523285e-51 | -8.615850e-47 |
| Msa0129060 | Msa0847080 | 0.801783 | 7.650507e-49 | -8.615850e-47 |
| Msa0129060 | Msa0858770 | 0.801750 | 7.770083e-49 | -8.615850e-47 |
| Msa0129060 | Msa0864010 | 0.809074 | 2.264919e-50 | -8.615850e-47 |
| Msa0129060 | Msa0869100 | 0.849103 | 4.007620e-60 | -8.615850e-47 |
| Msa0129060 | Msa0902760 | 0.811260 | 7.653459e-51 | -8.615850e-47 |
| Msa0129060 | Msa0933230 | 0.830971 | 2.174427e-55 | -8.615850e-47 |
| Msa0129060 | Msa0933310 | 0.860867 | 1.531379e-63 | -8.615850e-47 |
| Msa0129060 | Msa0966400 | 0.803094 | 4.106731e-49 | -8.615850e-47 |
| Msa0129060 | Msa0968590 | 0.860030 | 2.743287e-63 | -8.615850e-47 |
| Msa0129060 | Msa0969630 | 0.810108 | 1.357982e-50 | -8.615850e-47 |
| Msa0129060 | Msa0970030 | 0.819816 | 9.520241e-53 | -8.615850e-47 |
| Msa0129060 | Msa0971090 | 0.851661 | 7.673536e-61 | -8.615850e-47 |
| Msa0129060 | Msa1010350 | 0.811265 | 7.631901e-51 | -8.615850e-47 |
| Msa0129060 | Msa1013400 | 0.814222 | 1.719646e-51 | -8.615850e-47 |
| Msa0129060 | Msa1014420 | 0.823316 | 1.479165e-53 | -8.615850e-47 |
| Msa0129060 | Msa1055410 | 0.804565 | 2.032484e-49 | -8.615850e-47 |
| Msa0129060 | Msa1081150 | 0.830753 | 2.459384e-55 | -8.615850e-47 |
| Msa0129060 | Msa1093530 | 0.809183 | 2.146239e-50 | -8.615850e-47 |
| Msa0129060 | Msa1101600 | 0.829650 | 4.572481e-55 | -8.615850e-47 |
| Msa0129060 | Msa1104140 | 0.805511 | 1.288723e-49 | -8.615850e-47 |
| Msa0129060 | Msa1119200 | 0.813893 | 2.032887e-51 | -8.615850e-47 |
| Msa0129060 | Msa1121440 | 0.813329 | 2.704948e-51 | -8.615850e-47 |
| Msa0129060 | Msa1125760 | 0.814308 | 1.646048e-51 | -8.615850e-47 |
| Msa0129060 | Msa1126510 | 0.824580 | 7.474611e-54 | -8.615850e-47 |
| Msa0129060 | Msa1126770 | 0.810919 | 9.070874e-51 | -8.615850e-47 |
| Msa0129060 | Msa1127890 | 0.832464 | 9.313927e-56 | -8.615850e-47 |
| Msa0129060 | Msa1165870 | 0.830397 | 3.005832e-55 | -8.615850e-47 |
| Msa0129060 | Msa1165920 | 0.823452 | 1.374813e-53 | -8.615850e-47 |
| Msa0129060 | Msa1165940 | 0.852060 | 5.911904e-61 | -8.615850e-47 |
| Msa0129060 | Msa1166330 | 0.834958 | 2.217511e-56 | -8.615850e-47 |
| Msa0129060 | Msa1166340 | 0.830968 | 2.177524e-55 | -8.615850e-47 |
| Msa0129060 | Msa1166860 | 0.808245 | 3.405657e-50 | -8.615850e-47 |
| Msa0129060 | Msa1171360 | 0.827534 | 1.483784e-54 | -8.615850e-47 |
| Msa0129060 | Msa1179950 | 0.829540 | 4.862830e-55 | -8.615850e-47 |
| Msa0129060 | Msa1179980 | 0.806760 | 7.034581e-50 | -8.615850e-47 |
| Msa0129060 | Msa1187840 | 0.820670 | 6.066821e-53 | -8.615850e-47 |
| Msa0129060 | Msa1207270 | 0.808923 | 2.439134e-50 | -8.615850e-47 |
| Msa0129060 | Msa1211890 | 0.803709 | 3.063393e-49 | -8.615850e-47 |
| Msa0129060 | Msa1214890 | 0.809212 | 2.115149e-50 | -8.615850e-47 |
| Msa0129060 | Msa1218600 | 0.818976 | 1.479895e-52 | -8.615850e-47 |
| Msa0129060 | Msa1218960 | 0.807795 | 4.246006e-50 | -8.615850e-47 |
| Msa0129060 | Msa1251160 | 0.802736 | 4.869785e-49 | -8.615850e-47 |
| Msa0129060 | Msa1254510 | 0.804123 | 2.512157e-49 | -8.615850e-47 |
| Msa0129060 | Msa1255040 | -0.815657 | 8.262566e-52 | -8.615850e-47 |
| Msa0129060 | Msa1270690 | 0.805149 | 1.534241e-49 | -8.615850e-47 |
| Msa0129060 | Msa1283170 | 0.828118 | 1.073615e-54 | -8.615850e-47 |
| Msa0129060 | Msa1304820 | 0.829457 | 5.093335e-55 | -8.615850e-47 |
| Msa0129060 | Msa1305710 | 0.804724 | 1.883090e-49 | -8.615850e-47 |
| Msa0129060 | Msa1306990 | 0.829073 | 6.312794e-55 | -8.615850e-47 |
| Msa0129060 | Msa1307950 | 0.838538 | 2.710421e-57 | -8.615850e-47 |
| Msa0129060 | Msa1316780 | 0.809909 | 1.498636e-50 | -8.615850e-47 |
| Msa0129060 | Msa1316830 | 0.817930 | 2.553801e-52 | -8.615850e-47 |
| Msa0129060 | Msa1321630 | 0.813499 | 2.481438e-51 | -8.615850e-47 |
| Msa0129060 | Msa1331910 | 0.820230 | 7.654520e-53 | -8.615850e-47 |
| Msa0129060 | Msa1335940 | 0.802299 | 5.991592e-49 | -8.615850e-47 |
| Msa0129060 | Msa1342900 | 0.805081 | 1.585351e-49 | -8.615850e-47 |
| Msa0129060 | Msa1346730 | 0.813913 | 2.011939e-51 | -8.615850e-47 |
| Msa0129060 | Msa1353060 | 0.832709 | 8.098321e-56 | -8.615850e-47 |
| Msa0129060 | Msa1356440 | 0.821417 | 4.083178e-53 | -8.615850e-47 |
| Msa0129060 | Msa1361100 | 0.813097 | 3.040751e-51 | -8.615850e-47 |
| Msa0129060 | Msa1367590 | 0.831080 | 2.043841e-55 | -8.615850e-47 |
| Msa0129060 | Msa1368120 | 0.805875 | 1.080779e-49 | -8.615850e-47 |
| Msa0129060 | Msa1370740 | 0.941714 | 2.571237e-101 | -8.615850e-47 |
| Msa0129060 | Msa1385670 | 0.813261 | 2.799334e-51 | -8.615850e-47 |
| Msa0129060 | Msa1394290 | 0.816811 | 4.562720e-52 | -8.615850e-47 |
| Msa0129060 | Msa1397810 | 0.804887 | 1.740530e-49 | -8.615850e-47 |
| Msa0129060 | Msa1402420 | -0.808159 | 3.551402e-50 | -8.615850e-47 |
| Msa0129060 | Msa1404010 | 0.805223 | 1.480639e-49 | -8.615850e-47 |
| Msa0129060 | Msa1404190 | 0.825204 | 5.325515e-54 | -8.615850e-47 |
| Msa0129060 | Msa1407460 | 0.822845 | 1.904375e-53 | -8.615850e-47 |
| Msa0129060 | Msa1418340 | 0.801968 | 7.009360e-49 | -8.615850e-47 |
| Msa0129060 | Msa1433390 | 0.817692 | 2.889802e-52 | -8.615850e-47 |
| Msa0129060 | Msa1443780 | 0.947881 | 2.830352e-106 | -8.615850e-47 |
| Msa0129060 | Msa1451560 | 0.807923 | 3.987773e-50 | -8.615850e-47 |
| Msa0129060 | Msa1461280 | 0.828811 | 7.306562e-55 | -8.615850e-47 |
| Msa0129060 | Msa1465080 | 0.811487 | 6.831412e-51 | -8.615850e-47 |
| Msa0129060 | Msa1466300 | 0.818017 | 2.441489e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129060 | MtrunA17_Chr1g0195701 | 96.175 | 183 | 3 | 1 | 1 | 179 | 1 | 183 | 1.99e-126 | 353 |
| Msa0129060 | MtrunA17_Chr7g0269271 | 74.074 | 108 | 24 | 1 | 1 | 104 | 1 | 108 | 3.95e-54 | 171 |
| Msa0129060 | MtrunA17_Chr6g0465301 | 47.407 | 135 | 62 | 2 | 1 | 126 | 1 | 135 | 5.14e-37 | 126 |
| Msa0129060 | MtrunA17_Chr6g0460991 | 48.624 | 109 | 51 | 2 | 1 | 105 | 1 | 108 | 3.56e-31 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0129060 | AT4G02450.2 | 58.400 | 125 | 45 | 3 | 1 | 119 | 1 | 124 | 1.35e-47 | 155 |
| Msa0129060 | AT4G02450.1 | 58.400 | 125 | 45 | 3 | 1 | 119 | 1 | 124 | 1.39e-47 | 155 |
| Msa0129060 | AT3G03773.1 | 47.887 | 142 | 66 | 4 | 1 | 139 | 1 | 137 | 4.39e-37 | 125 |
| Msa0129060 | AT3G03773.3 | 52.174 | 115 | 51 | 2 | 1 | 112 | 1 | 114 | 9.12e-37 | 124 |
| Msa0129060 | AT3G03773.2 | 47.183 | 142 | 67 | 4 | 1 | 139 | 55 | 191 | 4.98e-35 | 122 |
Find 71 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGTTGATTGGGATAAA+TGG | 0.226101 | 1_3:+58878425 | Msa0129060:CDS |
| GTATGCGTTGTACCTCGTTT+TGG | 0.292489 | 1_3:-58876921 | None:intergenic |
| CATAATACAAGCTAATGTTT+AGG | 0.316115 | 1_3:-58879981 | None:intergenic |
| TGAAGGAAAGACACGGTATC+TGG | 0.322168 | 1_3:+58880128 | Msa0129060:three_prime_UTR |
| CACATTATGTGAAAGTTGAT+TGG | 0.336982 | 1_3:+58878416 | Msa0129060:CDS |
| CTATGTCACGATTCAGTTGC+CGG | 0.340941 | 1_3:+58877878 | Msa0129060:CDS |
| ATGTTAAACGAAGAACATTC+TGG | 0.361010 | 1_3:+58876858 | None:intergenic |
| ATGTGCTTGAAGCAGCTTCC+TGG | 0.366179 | 1_3:-58879833 | None:intergenic |
| ATAATACAAGCTAATGTTTA+GGG | 0.373227 | 1_3:-58879980 | None:intergenic |
| TTGAGATGTTTATTTATTGA+AGG | 0.382394 | 1_3:+58880111 | Msa0129060:three_prime_UTR |
| GGACGGTGCTCTTGCCAGCT+TGG | 0.394866 | 1_3:-58879812 | None:intergenic |
| AGGTCTCGGTGACCTGGACT+TGG | 0.409814 | 1_3:+58878563 | Msa0129060:intron |
| CTTGGGAGGGATGGATTTCT+CGG | 0.410768 | 1_3:+58878581 | Msa0129060:CDS |
| AGTCTGACTGTAGTATCGTT+TGG | 0.426310 | 1_3:+58879919 | Msa0129060:three_prime_UTR |
| ACATTATGTGAAAGTTGATT+GGG | 0.435304 | 1_3:+58878417 | Msa0129060:CDS |
| CTTTGAGCCCACTTGACCTC+CGG | 0.445693 | 1_3:-58877843 | None:intergenic |
| AGCTGGCAAGAGCACCGTCC+AGG | 0.453170 | 1_3:+58879815 | Msa0129060:CDS |
| CATATTCTGTGTAGTGCAAA+AGG | 0.459449 | 1_3:+58878345 | Msa0129060:CDS |
| TCAAAACACCGTCTGGAGTA+AGG | 0.459550 | 1_3:-58877923 | None:intergenic |
| TTTATTAGGTCTCGGTGACC+TGG | 0.461080 | 1_3:+58878557 | Msa0129060:intron |
| AAGAACATTCTGGAAACAAC+AGG | 0.465456 | 1_3:+58876868 | Msa0129060:five_prime_UTR |
| GAAAGTTGATTGGGATAAAT+GGG | 0.470728 | 1_3:+58878426 | Msa0129060:CDS |
| GCTTGAATGCAGTCGTCATC+CGG | 0.473159 | 1_3:+58877824 | Msa0129060:intron |
| GTCGTCATCCGGAGGTCAAG+TGG | 0.482409 | 1_3:+58877835 | Msa0129060:intron |
| CCTTGTCGAAGAGTGGCAAC+TGG | 0.486019 | 1_3:-58877989 | None:intergenic |
| TGACCTGGACTTGGGAGGGA+TGG | 0.491935 | 1_3:+58878572 | Msa0129060:CDS |
| GGAGGTCAAGTGGGCTCAAA+GGG | 0.493027 | 1_3:+58877845 | Msa0129060:CDS |
| TGCAAAAGGCAGAGGATGAA+TGG | 0.496195 | 1_3:+58878359 | Msa0129060:CDS |
| ACTATCGTACTTCAACTTGA+AGG | 0.498116 | 1_3:-58880021 | None:intergenic |
| ACAAGAGGGTAATGATAATG+AGG | 0.504951 | 1_3:+58879770 | Msa0129060:CDS |
| GCCAGCTTGGTCTCCAACCG+TGG | 0.507840 | 1_3:-58879799 | None:intergenic |
| CAGAGGATGAATGGTGGAAA+AGG | 0.507991 | 1_3:+58878368 | Msa0129060:CDS |
| CAGTTTAAGATCTTATACTC+AGG | 0.510705 | 1_3:+58879866 | Msa0129060:three_prime_UTR |
| AATCCATCCCTCCCAAGTCC+AGG | 0.516889 | 1_3:-58878575 | None:intergenic |
| CTCGGTGACCTGGACTTGGG+AGG | 0.517191 | 1_3:+58878567 | Msa0129060:CDS |
| CAATCAACTTTCACATAATG+TGG | 0.527025 | 1_3:-58878415 | None:intergenic |
| TTTGACGACGGTGATGATGA+AGG | 0.527145 | 1_3:+58878720 | Msa0129060:CDS |
| CGGAGGTCAAGTGGGCTCAA+AGG | 0.538850 | 1_3:+58877844 | Msa0129060:CDS |
| TCGGTGACCTGGACTTGGGA+GGG | 0.538949 | 1_3:+58878568 | Msa0129060:CDS |
| AATGAGGGAGGTTCCACGGT+TGG | 0.540422 | 1_3:+58879786 | Msa0129060:CDS |
| TCCACGGTTGGAGACCAAGC+TGG | 0.546944 | 1_3:+58879798 | Msa0129060:CDS |
| AACGAGGTACAACGCATACA+AGG | 0.548721 | 1_3:+58876925 | Msa0129060:five_prime_UTR |
| CTGTGTAGTGCAAAAGGCAG+AGG | 0.555658 | 1_3:+58878351 | Msa0129060:CDS |
| TTTGTGCTGCAGCAATTTGA+GGG | 0.567193 | 1_3:+58878675 | Msa0129060:intron |
| AAAATTAACGTAGGAGTGAG+AGG | 0.580252 | 1_3:+58878322 | Msa0129060:CDS |
| GGGTGATGATGCAGTGGGTG+CGG | 0.586506 | 1_3:+58878695 | Msa0129060:CDS |
| GGTCTCGGTGACCTGGACTT+GGG | 0.589648 | 1_3:+58878564 | Msa0129060:intron |
| CATTAGCTTGTATTATGATG+AGG | 0.593709 | 1_3:+58879987 | Msa0129060:three_prime_UTR |
| AAAAGGTTACTGAAAGCAGA+AGG | 0.595204 | 1_3:+58878385 | Msa0129060:CDS |
| TGATAATGAGGGAGGTTCCA+CGG | 0.595705 | 1_3:+58879782 | Msa0129060:CDS |
| TCGTCATCCGGAGGTCAAGT+GGG | 0.596383 | 1_3:+58877836 | Msa0129060:CDS |
| CAAGAGGGTAATGATAATGA+GGG | 0.603330 | 1_3:+58879771 | Msa0129060:CDS |
| ACATTAACCTTGTCGAAGAG+TGG | 0.607273 | 1_3:-58877996 | None:intergenic |
| GTGGATGAAGATGAAGATGC+GGG | 0.610763 | 1_3:+58878448 | Msa0129060:CDS |
| CCAGTTGCCACTCTTCGACA+AGG | 0.617754 | 1_3:+58877989 | Msa0129060:CDS |
| GTGGCAACTGGAGCTCATAG+AGG | 0.620616 | 1_3:-58877977 | None:intergenic |
| GTGGTCTTCAGCACCAGCAG+TGG | 0.621573 | 1_3:-58877955 | None:intergenic |
| CAGGAGAGCAAAATTAACGT+AGG | 0.633027 | 1_3:+58878313 | Msa0129060:intron |
| TCAACTTTCACATAATGTGG+AGG | 0.635270 | 1_3:-58878412 | None:intergenic |
| GCTTGAAGCAGCTTCCTGGA+CGG | 0.652191 | 1_3:-58879829 | None:intergenic |
| AAAGTGAACCTTACTCCAGA+CGG | 0.655853 | 1_3:+58877915 | Msa0129060:CDS |
| GCAACTGGAGCTCATAGAGG+TGG | 0.662772 | 1_3:-58877974 | None:intergenic |
| GGTGGATGAAGATGAAGATG+CGG | 0.663693 | 1_3:+58878447 | Msa0129060:CDS |
| ATTTGAGGGTGATGATGCAG+TGG | 0.664488 | 1_3:+58878689 | Msa0129060:CDS |
| AAAGGTTACTGAAAGCAGAA+GGG | 0.668010 | 1_3:+58878386 | Msa0129060:CDS |
| TGAATGCAGTCGTCATCCGG+AGG | 0.670112 | 1_3:+58877827 | Msa0129060:intron |
| AGTTGATTGGGATAAATGGG+TGG | 0.672477 | 1_3:+58878429 | Msa0129060:CDS |
| GAGGGTAATGATAATGAGGG+AGG | 0.683148 | 1_3:+58879774 | Msa0129060:CDS |
| TTTGAGGGTGATGATGCAGT+GGG | 0.686057 | 1_3:+58878690 | Msa0129060:CDS |
| TATTTATTGAAGGAAAGACA+CGG | 0.700279 | 1_3:+58880121 | Msa0129060:three_prime_UTR |
| AAAAGGCAGAGGATGAATGG+TGG | 0.737688 | 1_3:+58878362 | Msa0129060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTGTTAAATTTATTT+TGG | + | chr1_3:58877566-58877585 | Msa0129060:intron | 10.0% |
| !!! | TTCATTTTTATGTTAAAATT+AGG | + | chr1_3:58877710-58877729 | Msa0129060:intron | 10.0% |
| !! | AATTTAACAAAAATGTTTCA+TGG | - | chr1_3:58877561-58877580 | None:intergenic | 15.0% |
| !! | TTTCTTTAATCTTAAACAAA+CGG | + | chr1_3:58879486-58879505 | Msa0129060:intron | 15.0% |
| !! | TGTGAATAGTTTAATTGAAA+TGG | + | chr1_3:58877196-58877215 | Msa0129060:intron | 20.0% |
| !! | TAGATGGTTAATTCAATTTA+TGG | + | chr1_3:58877384-58877403 | Msa0129060:intron | 20.0% |
| !!! | TTTTATGTTAAAATTAGGCA+TGG | + | chr1_3:58877715-58877734 | Msa0129060:intron | 20.0% |
| !! | ACAGTTTATGATAAAAGATT+TGG | + | chr1_3:58877764-58877783 | Msa0129060:intron | 20.0% |
| !!! | TTTATGATAAAAGATTTGGT+GGG | + | chr1_3:58877768-58877787 | Msa0129060:intron | 20.0% |
| !! | TTAGAATGAATATGAAACTA+AGG | - | chr1_3:58878154-58878173 | None:intergenic | 20.0% |
| !!! | TGTAACTAATTTTCTTGTTA+AGG | + | chr1_3:58878187-58878206 | Msa0129060:intron | 20.0% |
| !!! | TTAGTTTTTCCAAGTTATAA+AGG | + | chr1_3:58878501-58878520 | Msa0129060:intron | 20.0% |
| !!! | TAGTTTTTCCAAGTTATAAA+GGG | + | chr1_3:58878502-58878521 | Msa0129060:intron | 20.0% |
| !! | TAAAAATACCCTTTATAACT+TGG | - | chr1_3:58878513-58878532 | None:intergenic | 20.0% |
| !!! | ATATCTAATGGTTTACTTTT+AGG | + | chr1_3:58878972-58878991 | Msa0129060:intron | 20.0% |
| !!! | TATCTAATGGTTTACTTTTA+GGG | + | chr1_3:58878973-58878992 | Msa0129060:intron | 20.0% |
| !! | CCAACAAGAATAAATTAATA+CGG | - | chr1_3:58879012-58879031 | None:intergenic | 20.0% |
| !! | TTCTTGTTGGAAAATTAAAT+AGG | + | chr1_3:58879022-58879041 | Msa0129060:intron | 20.0% |
| !! | ATAATACAAGCTAATGTTTA+GGG | - | chr1_3:58879983-58880002 | None:intergenic | 20.0% |
| !! | TTGAGATGTTTATTTATTGA+AGG | + | chr1_3:58880111-58880130 | Msa0129060:three_prime_UTR | 20.0% |
| !!! | ATCTGGATTTTCTATATTTT+TGG | + | chr1_3:58880145-58880164 | Msa0129060:three_prime_UTR | 20.0% |
| !! | TGAAAAATTGTAAAAGTGCA+GGG | - | chr1_3:58877031-58877050 | None:intergenic | 25.0% |
| !!! | TTAGGTGTTTTTGTTTCATA+TGG | + | chr1_3:58877110-58877129 | Msa0129060:intron | 25.0% |
| ! | CAATTAAACTATTCACAGTT+AGG | - | chr1_3:58877193-58877212 | None:intergenic | 25.0% |
| ! | GAATTGTAACTATCAAGAAT+CGG | + | chr1_3:58877246-58877265 | Msa0129060:intron | 25.0% |
| ! | AATTGTAACTATCAAGAATC+GGG | + | chr1_3:58877247-58877266 | Msa0129060:intron | 25.0% |
| !!! | TATTTTAAACGTGATTAACC+AGG | - | chr1_3:58877343-58877362 | None:intergenic | 25.0% |
| ! | ACACTGAAAATTGTGAAATT+GGG | - | chr1_3:58877450-58877469 | None:intergenic | 25.0% |
| !!! | ATTTTCTAGTGTCTATTCAA+AGG | + | chr1_3:58877604-58877623 | Msa0129060:intron | 25.0% |
| ! | TCTCATTCAATTCATGTAAA+GGG | - | chr1_3:58877632-58877651 | None:intergenic | 25.0% |
| ! | TTCTCATTCAATTCATGTAA+AGG | - | chr1_3:58877633-58877652 | None:intergenic | 25.0% |
| ! | ATGAATTGAATGAGAATTGA+TGG | + | chr1_3:58877637-58877656 | Msa0129060:intron | 25.0% |
| ! | GTTTATGATAAAAGATTTGG+TGG | + | chr1_3:58877767-58877786 | Msa0129060:intron | 25.0% |
| ! | GAGAAAACATTTCTAATTCA+TGG | + | chr1_3:58878025-58878044 | Msa0129060:intron | 25.0% |
| !! | TTTTCCAATGAGTTAAATCA+TGG | + | chr1_3:58878084-58878103 | Msa0129060:intron | 25.0% |
| !! | ACATTATGTGAAAGTTGATT+GGG | + | chr1_3:58878417-58878436 | Msa0129060:CDS | 25.0% |
| ! | TACTTGACTATTATAAAGCA+TGG | + | chr1_3:58878796-58878815 | Msa0129060:intron | 25.0% |
| ! | TTGCATTTGTAGATTACATT+GGG | + | chr1_3:58878854-58878873 | Msa0129060:intron | 25.0% |
| !!! | ATCTAATGGTTTACTTTTAG+GGG | + | chr1_3:58878974-58878993 | Msa0129060:intron | 25.0% |
| ! | CCGTATTAATTTATTCTTGT+TGG | + | chr1_3:58879009-58879028 | Msa0129060:intron | 25.0% |
| ! | GAAAATTGAAATTGACTGTA+GGG | + | chr1_3:58879096-58879115 | Msa0129060:intron | 25.0% |
| ! | AATAACTTAATCAGTTTCAC+TGG | - | chr1_3:58879194-58879213 | None:intergenic | 25.0% |
| !!! | TGTCAATTTTAACTTTTGGA+TGG | - | chr1_3:58879631-58879650 | None:intergenic | 25.0% |
| !!! | GGAATGTCAATTTTAACTTT+TGG | - | chr1_3:58879635-58879654 | None:intergenic | 25.0% |
| ! | ATATGACAATTAAGTTCCTT+AGG | - | chr1_3:58879689-58879708 | None:intergenic | 25.0% |
| ! | GAACTTAATTGTCATATTGT+TGG | + | chr1_3:58879692-58879711 | Msa0129060:intron | 25.0% |
| ! | CATAATACAAGCTAATGTTT+AGG | - | chr1_3:58879984-58880003 | None:intergenic | 25.0% |
| ! | TATTTATTGAAGGAAAGACA+CGG | + | chr1_3:58880121-58880140 | Msa0129060:three_prime_UTR | 25.0% |
| CTTCTCTCAAACAAAAAATG+AGG | + | chr1_3:58876981-58877000 | Msa0129060:exon | 30.0% | |
| ! | CTGAAAAATTGTAAAAGTGC+AGG | - | chr1_3:58877032-58877051 | None:intergenic | 30.0% |
| ACTATTCACAGTTAGGATTT+AGG | - | chr1_3:58877186-58877205 | None:intergenic | 30.0% | |
| ATTGTAACTATCAAGAATCG+GGG | + | chr1_3:58877248-58877267 | Msa0129060:intron | 30.0% | |
| AATTAGTTCAGTTGAGTAGA+TGG | + | chr1_3:58877368-58877387 | Msa0129060:intron | 30.0% | |
| CACTGAAAATTGTGAAATTG+GGG | - | chr1_3:58877449-58877468 | None:intergenic | 30.0% | |
| CACACTGAAAATTGTGAAAT+TGG | - | chr1_3:58877451-58877470 | None:intergenic | 30.0% | |
| GTTAATTGCATGCATAATTG+TGG | - | chr1_3:58877506-58877525 | None:intergenic | 30.0% | |
| TATGTTAAAATTAGGCATGG+TGG | + | chr1_3:58877718-58877737 | Msa0129060:intron | 30.0% | |
| ATGTTAAAATTAGGCATGGT+GGG | + | chr1_3:58877719-58877738 | Msa0129060:intron | 30.0% | |
| CAAGCATTAGAAAATCAGAT+AGG | - | chr1_3:58877809-58877828 | None:intergenic | 30.0% | |
| !!! | ACTTTTGCATTTTTGGAATC+CGG | - | chr1_3:58877900-58877919 | None:intergenic | 30.0% |
| !! | AAGGTTCACTTTTGCATTTT+TGG | - | chr1_3:58877907-58877926 | None:intergenic | 30.0% |
| TTCTAATTCATGGATAGCAT+TGG | + | chr1_3:58878035-58878054 | Msa0129060:intron | 30.0% | |
| AATGCCATGATTTAACTCAT+TGG | - | chr1_3:58878091-58878110 | None:intergenic | 30.0% | |
| TAATACATGCATGCACTTAT+GGG | + | chr1_3:58878114-58878133 | Msa0129060:intron | 30.0% | |
| CAATCAACTTTCACATAATG+TGG | - | chr1_3:58878418-58878437 | None:intergenic | 30.0% | |
| ! | CACATTATGTGAAAGTTGAT+TGG | + | chr1_3:58878416-58878435 | Msa0129060:CDS | 30.0% |
| ! | TGAAAGTTGATTGGGATAAA+TGG | + | chr1_3:58878425-58878444 | Msa0129060:CDS | 30.0% |
| ! | GAAAGTTGATTGGGATAAAT+GGG | + | chr1_3:58878426-58878445 | Msa0129060:CDS | 30.0% |
| CAACTGATTGTCTGTTTATT+AGG | + | chr1_3:58878543-58878562 | Msa0129060:intron | 30.0% | |
| ATTGTCTGTTTATTAGGTCT+CGG | + | chr1_3:58878549-58878568 | Msa0129060:intron | 30.0% | |
| CAAACAACATTACTAAGAGA+AGG | - | chr1_3:58878643-58878662 | None:intergenic | 30.0% | |
| CTGCAGCACAAAAATTAATT+AGG | - | chr1_3:58878667-58878686 | None:intergenic | 30.0% | |
| CTATTATAAAGCATGGTTGA+CGG | + | chr1_3:58878803-58878822 | Msa0129060:intron | 30.0% | |
| CTTGCATTTGTAGATTACAT+TGG | + | chr1_3:58878853-58878872 | Msa0129060:intron | 30.0% | |
| ! | ACTGCTATTTAAGATACTCT+TGG | + | chr1_3:58878883-58878902 | Msa0129060:intron | 30.0% |
| ! | CTGCTATTTAAGATACTCTT+GGG | + | chr1_3:58878884-58878903 | Msa0129060:intron | 30.0% |
| !! | TTTCATTTCAGTTGATGAGA+TGG | + | chr1_3:58879056-58879075 | Msa0129060:intron | 30.0% |
| GGAAAATTGAAATTGACTGT+AGG | + | chr1_3:58879095-58879114 | Msa0129060:intron | 30.0% | |
| !! | ATGTTTTAGGCTAAAGTTTG+TGG | + | chr1_3:58879124-58879143 | Msa0129060:intron | 30.0% |
| TTAAAGCTATTCTATCACTC+AGG | - | chr1_3:58879397-58879416 | None:intergenic | 30.0% | |
| !! | GTGATAGAATAGCTTTAAAC+TGG | + | chr1_3:58879399-58879418 | Msa0129060:intron | 30.0% |
| ACTATGATCAAGATCAGATT+TGG | - | chr1_3:58879429-58879448 | None:intergenic | 30.0% | |
| TCAAAACCTGAAAAACAAGA+GGG | + | chr1_3:58879756-58879775 | Msa0129060:CDS | 30.0% | |
| ! | CAGTTTAAGATCTTATACTC+AGG | + | chr1_3:58879866-58879885 | Msa0129060:three_prime_UTR | 30.0% |
| !! | CATTAGCTTGTATTATGATG+AGG | + | chr1_3:58879987-58880006 | Msa0129060:three_prime_UTR | 30.0% |
| !! | AATTGGCTTGTATTATGATG+AGG | + | chr1_3:58880048-58880067 | Msa0129060:intron | 30.0% |
| ! | AAGAACATTCTGGAAACAAC+AGG | + | chr1_3:58876868-58876887 | Msa0129060:five_prime_UTR | 35.0% |
| TCATCAAAAATCCCAAAACG+AGG | + | chr1_3:58876909-58876928 | Msa0129060:five_prime_UTR | 35.0% | |
| GTTCGATGCTTAGTTGTATT+AGG | + | chr1_3:58877092-58877111 | Msa0129060:intron | 35.0% | |
| !! | GGTGTTTTTGTTTCATATGG+TGG | + | chr1_3:58877113-58877132 | Msa0129060:intron | 35.0% |
| TTGTAACTATCAAGAATCGG+GGG | + | chr1_3:58877249-58877268 | Msa0129060:intron | 35.0% | |
| ! | GTTGGAGGTGTAGAAAAAAT+GGG | - | chr1_3:58877319-58877338 | None:intergenic | 35.0% |
| ! | TGTTGGAGGTGTAGAAAAAA+TGG | - | chr1_3:58877320-58877339 | None:intergenic | 35.0% |
| GGTTAACTCAGTTGAGTATA+TGG | - | chr1_3:58877485-58877504 | None:intergenic | 35.0% | |
| TGCAATTAACTACTTGTCGA+AGG | + | chr1_3:58877516-58877535 | Msa0129060:intron | 35.0% | |
| CTAATACATGCATGCACTTA+TGG | + | chr1_3:58878113-58878132 | Msa0129060:intron | 35.0% | |
| TCAATCTCTGCTATTGTTTC+AGG | + | chr1_3:58878294-58878313 | Msa0129060:intron | 35.0% | |
| AAAATTAACGTAGGAGTGAG+AGG | + | chr1_3:58878322-58878341 | Msa0129060:CDS | 35.0% | |
| CATATTCTGTGTAGTGCAAA+AGG | + | chr1_3:58878345-58878364 | Msa0129060:CDS | 35.0% | |
| AAAAGGTTACTGAAAGCAGA+AGG | + | chr1_3:58878385-58878404 | Msa0129060:CDS | 35.0% | |
| AAAGGTTACTGAAAGCAGAA+GGG | + | chr1_3:58878386-58878405 | Msa0129060:CDS | 35.0% | |
| TCAACTTTCACATAATGTGG+AGG | - | chr1_3:58878415-58878434 | None:intergenic | 35.0% | |
| CATTTGTAGATTACATTGGG+TGG | + | chr1_3:58878857-58878876 | Msa0129060:intron | 35.0% | |
| GGAAAACTTTCATCTTGCAT+TGG | + | chr1_3:58878905-58878924 | Msa0129060:intron | 35.0% | |
| !! | TTTCATCTTGCATTGGTTGA+TGG | + | chr1_3:58878912-58878931 | Msa0129060:intron | 35.0% |
| !!! | TCAGTTGATGAGATGGTTTT+TGG | + | chr1_3:58879063-58879082 | Msa0129060:intron | 35.0% |
| !!! | GATGGTTTTTGGTAGACATT+TGG | + | chr1_3:58879074-58879093 | Msa0129060:intron | 35.0% |
| ! | AAAGTTTGTGGCTTTTCTAG+TGG | + | chr1_3:58879136-58879155 | Msa0129060:intron | 35.0% |
| ! | TGATCAAGATCAGATTTGGT+GGG | - | chr1_3:58879425-58879444 | None:intergenic | 35.0% |
| ATGATCAAGATCAGATTTGG+TGG | - | chr1_3:58879426-58879445 | None:intergenic | 35.0% | |
| AAACGGTAATAGATGGTGAA+GGG | - | chr1_3:58879513-58879532 | None:intergenic | 35.0% | |
| TAAACGGTAATAGATGGTGA+AGG | - | chr1_3:58879514-58879533 | None:intergenic | 35.0% | |
| GTCACTTAAACGGTAATAGA+TGG | - | chr1_3:58879520-58879539 | None:intergenic | 35.0% | |
| AGTCGTAAGAGTCACTTAAA+CGG | - | chr1_3:58879530-58879549 | None:intergenic | 35.0% | |
| GTCAAAACCTGAAAAACAAG+AGG | + | chr1_3:58879755-58879774 | Msa0129060:CDS | 35.0% | |
| !!! | TCATTACCCTCTTGTTTTTC+AGG | - | chr1_3:58879765-58879784 | None:intergenic | 35.0% |
| ! | ACAAGAGGGTAATGATAATG+AGG | + | chr1_3:58879770-58879789 | Msa0129060:CDS | 35.0% |
| ! | CAAGAGGGTAATGATAATGA+GGG | + | chr1_3:58879771-58879790 | Msa0129060:CDS | 35.0% |
| ACTATCGTACTTCAACTTGA+AGG | - | chr1_3:58880024-58880043 | None:intergenic | 35.0% | |
| GAAGTACGATAGTGTACAAT+TGG | + | chr1_3:58880031-58880050 | Msa0129060:intron | 35.0% | |
| ACTATCGTACTTCAACTTGA+AGG | - | chr1_3:58880024-58880043 | None:intergenic | 35.0% | |
| ! | TATGCGTTGTACCTCGTTTT+GGG | - | chr1_3:58876923-58876942 | None:intergenic | 40.0% |
| AAACGTGATTAACCAGGTGT+TGG | - | chr1_3:58877337-58877356 | None:intergenic | 40.0% | |
| ! | TAACTACTTGTCGAAGGTGT+AGG | + | chr1_3:58877522-58877541 | Msa0129060:intron | 40.0% |
| CAGTGCTAATTGAACAGTCA+TGG | + | chr1_3:58877661-58877680 | Msa0129060:intron | 40.0% | |
| AAAGTGAACCTTACTCCAGA+CGG | + | chr1_3:58877915-58877934 | Msa0129060:CDS | 40.0% | |
| GAAAAAGTCAAAACACCGTC+TGG | - | chr1_3:58877933-58877952 | None:intergenic | 40.0% | |
| ACATTAACCTTGTCGAAGAG+TGG | - | chr1_3:58877999-58878018 | None:intergenic | 40.0% | |
| CTTCGACAAGGTTAATGTAG+AGG | + | chr1_3:58878001-58878020 | Msa0129060:intron | 40.0% | |
| CAGGAGAGCAAAATTAACGT+AGG | + | chr1_3:58878313-58878332 | Msa0129060:intron | 40.0% | |
| AGTTGATTGGGATAAATGGG+TGG | + | chr1_3:58878429-58878448 | Msa0129060:CDS | 40.0% | |
| ! | TTTTGTGCTGCAGCAATTTG+AGG | + | chr1_3:58878674-58878693 | Msa0129060:intron | 40.0% |
| TTTGTGCTGCAGCAATTTGA+GGG | + | chr1_3:58878675-58878694 | Msa0129060:intron | 40.0% | |
| CCAGACACAAAAGATGAAAC+AGG | - | chr1_3:58878944-58878963 | None:intergenic | 40.0% | |
| ! | CCTGTTTCATCTTTTGTGTC+TGG | + | chr1_3:58878941-58878960 | Msa0129060:intron | 40.0% |
| CTGGCTGACACTATATCTAA+TGG | + | chr1_3:58878960-58878979 | Msa0129060:intron | 40.0% | |
| ! | CTGTAGGGCAACTATGTTTT+AGG | + | chr1_3:58879111-58879130 | Msa0129060:intron | 40.0% |
| ATATCATATCTTACCCCACC+TGG | + | chr1_3:58879332-58879351 | Msa0129060:intron | 40.0% | |
| TATCACTCAGGAATCCAGAA+TGG | - | chr1_3:58879385-58879404 | None:intergenic | 40.0% | |
| ! | GAGGCACTATAAACAACAGT+AGG | - | chr1_3:58879656-58879675 | None:intergenic | 40.0% |
| AGTCTGACTGTAGTATCGTT+TGG | + | chr1_3:58879919-58879938 | Msa0129060:three_prime_UTR | 40.0% | |
| ! | GTATGCGTTGTACCTCGTTT+TGG | - | chr1_3:58876924-58876943 | None:intergenic | 45.0% |
| AACGAGGTACAACGCATACA+AGG | + | chr1_3:58876925-58876944 | Msa0129060:five_prime_UTR | 45.0% | |
| ! | TTTTCTACACCTCCAACACC+TGG | + | chr1_3:58877322-58877341 | Msa0129060:intron | 45.0% |
| ! | GTCGAAGGTGTAGGAAAAGT+TGG | + | chr1_3:58877531-58877550 | Msa0129060:intron | 45.0% |
| CTATGTCACGATTCAGTTGC+CGG | + | chr1_3:58877878-58877897 | Msa0129060:CDS | 45.0% | |
| ! | TCAAAACACCGTCTGGAGTA+AGG | - | chr1_3:58877926-58877945 | None:intergenic | 45.0% |
| !! | TTGACTTTTTCTGCCACTGC+TGG | + | chr1_3:58877942-58877961 | Msa0129060:CDS | 45.0% |
| TGCAAAAGGCAGAGGATGAA+TGG | + | chr1_3:58878359-58878378 | Msa0129060:CDS | 45.0% | |
| AAAAGGCAGAGGATGAATGG+TGG | + | chr1_3:58878362-58878381 | Msa0129060:CDS | 45.0% | |
| ! | CAGAGGATGAATGGTGGAAA+AGG | + | chr1_3:58878368-58878387 | Msa0129060:CDS | 45.0% |
| GGTGGATGAAGATGAAGATG+CGG | + | chr1_3:58878447-58878466 | Msa0129060:CDS | 45.0% | |
| GTGGATGAAGATGAAGATGC+GGG | + | chr1_3:58878448-58878467 | Msa0129060:CDS | 45.0% | |
| TTTATTAGGTCTCGGTGACC+TGG | + | chr1_3:58878557-58878576 | Msa0129060:intron | 45.0% | |
| ! | ATTTGAGGGTGATGATGCAG+TGG | + | chr1_3:58878689-58878708 | Msa0129060:CDS | 45.0% |
| ! | TTTGAGGGTGATGATGCAGT+GGG | + | chr1_3:58878690-58878709 | Msa0129060:CDS | 45.0% |
| ! | TTTGACGACGGTGATGATGA+AGG | + | chr1_3:58878720-58878739 | Msa0129060:CDS | 45.0% |
| GACGGTACATGCATATGTTG+TGG | + | chr1_3:58878821-58878840 | Msa0129060:intron | 45.0% | |
| CAGGTTTGATTACCTGCATG+AGG | + | chr1_3:58879302-58879321 | Msa0129060:intron | 45.0% | |
| AATCCAGAATGGTGCAACTG+GGG | - | chr1_3:58879374-58879393 | None:intergenic | 45.0% | |
| GAATCCAGAATGGTGCAACT+GGG | - | chr1_3:58879375-58879394 | None:intergenic | 45.0% | |
| TTCCTTAGGTCTACAGCTTG+AGG | - | chr1_3:58879675-58879694 | None:intergenic | 45.0% | |
| ! | GAGGGTAATGATAATGAGGG+AGG | + | chr1_3:58879774-58879793 | Msa0129060:CDS | 45.0% |
| ! | TGATAATGAGGGAGGTTCCA+CGG | + | chr1_3:58879782-58879801 | Msa0129060:CDS | 45.0% |
| TGAAGGAAAGACACGGTATC+TGG | + | chr1_3:58880128-58880147 | Msa0129060:three_prime_UTR | 45.0% | |
| !! | CGTGATTAACCAGGTGTTGG+AGG | - | chr1_3:58877334-58877353 | None:intergenic | 50.0% |
| GCTTGAATGCAGTCGTCATC+CGG | + | chr1_3:58877824-58877843 | Msa0129060:intron | 50.0% | |
| CTGTGTAGTGCAAAAGGCAG+AGG | + | chr1_3:58878351-58878370 | Msa0129060:CDS | 50.0% | |
| ! | CTTGGGAGGGATGGATTTCT+CGG | + | chr1_3:58878581-58878600 | Msa0129060:CDS | 50.0% |
| !! | ACTTTTAGGGGCGTGTCTGT+AGG | + | chr1_3:58878986-58879005 | Msa0129060:intron | 50.0% |
| AGTGAACTAGTAGCCTACGC+AGG | + | chr1_3:58879283-58879302 | Msa0129060:intron | 50.0% | |
| GCAGGTAATCAAACCTGCGT+AGG | - | chr1_3:58879299-58879318 | None:intergenic | 50.0% | |
| GATATCAAGCAGCCTCATGC+AGG | - | chr1_3:58879317-58879336 | None:intergenic | 50.0% | |
| CATATCTTACCCCACCTGGA+TGG | + | chr1_3:58879336-58879355 | Msa0129060:intron | 50.0% | |
| ATCCAGAATGGTGCAACTGG+GGG | - | chr1_3:58879373-58879392 | None:intergenic | 50.0% | |
| GGAATCCAGAATGGTGCAAC+TGG | - | chr1_3:58879376-58879395 | None:intergenic | 50.0% | |
| TGCCTCAAGCTGTAGACCTA+AGG | + | chr1_3:58879670-58879689 | Msa0129060:intron | 50.0% | |
| ATGTGCTTGAAGCAGCTTCC+TGG | - | chr1_3:58879836-58879855 | None:intergenic | 50.0% | |
| TGAATGCAGTCGTCATCCGG+AGG | + | chr1_3:58877827-58877846 | Msa0129060:intron | 55.0% | |
| TCGTCATCCGGAGGTCAAGT+GGG | + | chr1_3:58877836-58877855 | Msa0129060:CDS | 55.0% | |
| CTTTGAGCCCACTTGACCTC+CGG | - | chr1_3:58877846-58877865 | None:intergenic | 55.0% | |
| ! | GGAGGTCAAGTGGGCTCAAA+GGG | + | chr1_3:58877845-58877864 | Msa0129060:CDS | 55.0% |
| GCAACTGGAGCTCATAGAGG+TGG | - | chr1_3:58877977-58877996 | None:intergenic | 55.0% | |
| GTGGCAACTGGAGCTCATAG+AGG | - | chr1_3:58877980-58877999 | None:intergenic | 55.0% | |
| CCTTGTCGAAGAGTGGCAAC+TGG | - | chr1_3:58877992-58878011 | None:intergenic | 55.0% | |
| CCAGTTGCCACTCTTCGACA+AGG | + | chr1_3:58877989-58878008 | Msa0129060:CDS | 55.0% | |
| AATCCATCCCTCCCAAGTCC+AGG | - | chr1_3:58878578-58878597 | None:intergenic | 55.0% | |
| !! | GTGGGTGCGGATTTTGACGA+CGG | + | chr1_3:58878708-58878727 | Msa0129060:CDS | 55.0% |
| AACACGGTAGCCATCCAGGT+GGG | - | chr1_3:58879349-58879368 | None:intergenic | 55.0% | |
| TAACACGGTAGCCATCCAGG+TGG | - | chr1_3:58879350-58879369 | None:intergenic | 55.0% | |
| TGGTGCAACTGGGGGTAACA+CGG | - | chr1_3:58879365-58879384 | None:intergenic | 55.0% | |
| TACCCCCAGTTGCACCATTC+TGG | + | chr1_3:58879368-58879387 | Msa0129060:intron | 55.0% | |
| AATGAGGGAGGTTCCACGGT+TGG | + | chr1_3:58879786-58879805 | Msa0129060:CDS | 55.0% | |
| GCTTGAAGCAGCTTCCTGGA+CGG | - | chr1_3:58879832-58879851 | None:intergenic | 55.0% | |
| GTCGTCATCCGGAGGTCAAG+TGG | + | chr1_3:58877835-58877854 | Msa0129060:intron | 60.0% | |
| ! | CGGAGGTCAAGTGGGCTCAA+AGG | + | chr1_3:58877844-58877863 | Msa0129060:CDS | 60.0% |
| GTGGTCTTCAGCACCAGCAG+TGG | - | chr1_3:58877958-58877977 | None:intergenic | 60.0% | |
| AGGTCTCGGTGACCTGGACT+TGG | + | chr1_3:58878563-58878582 | Msa0129060:intron | 60.0% | |
| GGTCTCGGTGACCTGGACTT+GGG | + | chr1_3:58878564-58878583 | Msa0129060:intron | 60.0% | |
| TCGGTGACCTGGACTTGGGA+GGG | + | chr1_3:58878568-58878587 | Msa0129060:CDS | 60.0% | |
| TGACCTGGACTTGGGAGGGA+TGG | + | chr1_3:58878572-58878591 | Msa0129060:CDS | 60.0% | |
| ! | GGGTGATGATGCAGTGGGTG+CGG | + | chr1_3:58878695-58878714 | Msa0129060:CDS | 60.0% |
| ACACGGTAGCCATCCAGGTG+GGG | - | chr1_3:58879348-58879367 | None:intergenic | 60.0% | |
| GGGTAACACGGTAGCCATCC+AGG | - | chr1_3:58879353-58879372 | None:intergenic | 60.0% | |
| TCCACGGTTGGAGACCAAGC+TGG | + | chr1_3:58879798-58879817 | Msa0129060:CDS | 60.0% | |
| CTCGGTGACCTGGACTTGGG+AGG | + | chr1_3:58878567-58878586 | Msa0129060:CDS | 65.0% | |
| GCCAGCTTGGTCTCCAACCG+TGG | - | chr1_3:58879802-58879821 | None:intergenic | 65.0% | |
| GGACGGTGCTCTTGCCAGCT+TGG | - | chr1_3:58879815-58879834 | None:intergenic | 65.0% | |
| !! | AGCTGGCAAGAGCACCGTCC+AGG | + | chr1_3:58879815-58879834 | Msa0129060:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 58876867 | 58880176 | 58876867 | ID=Msa0129060;Name=Msa0129060 |
| chr1_3 | mRNA | 58876867 | 58880176 | 58876867 | ID=Msa0129060-mRNA-1;Parent=Msa0129060;Name=Msa0129060-mRNA-1;_AED=0.09;_eAED=0.09;_QI=131|0.83|0.85|1|0.83|0.71|7|258|179 |
| chr1_3 | exon | 58876867 | 58877002 | 58876867 | ID=Msa0129060-mRNA-1:exon:18968;Parent=Msa0129060-mRNA-1 |
| chr1_3 | exon | 58877836 | 58878010 | 58877836 | ID=Msa0129060-mRNA-1:exon:18969;Parent=Msa0129060-mRNA-1 |
| chr1_3 | exon | 58878316 | 58878469 | 58878316 | ID=Msa0129060-mRNA-1:exon:18970;Parent=Msa0129060-mRNA-1 |
| chr1_3 | exon | 58878565 | 58878602 | 58878565 | ID=Msa0129060-mRNA-1:exon:18971;Parent=Msa0129060-mRNA-1 |
| chr1_3 | exon | 58878687 | 58878741 | 58878687 | ID=Msa0129060-mRNA-1:exon:18972;Parent=Msa0129060-mRNA-1 |
| chr1_3 | exon | 58879745 | 58880033 | 58879745 | ID=Msa0129060-mRNA-1:exon:18973;Parent=Msa0129060-mRNA-1 |
| chr1_3 | exon | 58880095 | 58880176 | 58880095 | ID=Msa0129060-mRNA-1:exon:18974;Parent=Msa0129060-mRNA-1 |
| chr1_3 | five_prime_UTR | 58876867 | 58876997 | 58876867 | ID=Msa0129060-mRNA-1:five_prime_utr;Parent=Msa0129060-mRNA-1 |
| chr1_3 | CDS | 58876998 | 58877002 | 58876998 | ID=Msa0129060-mRNA-1:cds;Parent=Msa0129060-mRNA-1 |
| chr1_3 | CDS | 58877836 | 58878010 | 58877836 | ID=Msa0129060-mRNA-1:cds;Parent=Msa0129060-mRNA-1 |
| chr1_3 | CDS | 58878316 | 58878469 | 58878316 | ID=Msa0129060-mRNA-1:cds;Parent=Msa0129060-mRNA-1 |
| chr1_3 | CDS | 58878565 | 58878602 | 58878565 | ID=Msa0129060-mRNA-1:cds;Parent=Msa0129060-mRNA-1 |
| chr1_3 | CDS | 58878687 | 58878741 | 58878687 | ID=Msa0129060-mRNA-1:cds;Parent=Msa0129060-mRNA-1 |
| chr1_3 | CDS | 58879745 | 58879857 | 58879745 | ID=Msa0129060-mRNA-1:cds;Parent=Msa0129060-mRNA-1 |
| chr1_3 | three_prime_UTR | 58879858 | 58880033 | 58879858 | ID=Msa0129060-mRNA-1:three_prime_utr;Parent=Msa0129060-mRNA-1 |
| chr1_3 | three_prime_UTR | 58880095 | 58880176 | 58880095 | ID=Msa0129060-mRNA-1:three_prime_utr;Parent=Msa0129060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
