Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443780 | sp|P0C8Z0|Y8359_ORYSI | 67.692 | 130 | 40 | 1 | 1 | 130 | 1 | 128 | 7.27e-61 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443780 | G7IF81 | 98.361 | 183 | 3 | 0 | 1 | 183 | 1 | 183 | 1.12e-127 | 365 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004920 | Msa1443780 | 0.801195 | 1.009541e-48 | -8.615850e-47 |
| Msa0008090 | Msa1443780 | 0.808759 | 2.644801e-50 | -8.615850e-47 |
| Msa0008410 | Msa1443780 | 0.808415 | 3.131973e-50 | -8.615850e-47 |
| Msa0032260 | Msa1443780 | 0.801142 | 1.035156e-48 | -8.615850e-47 |
| Msa0034420 | Msa1443780 | 0.804085 | 2.558260e-49 | -8.615850e-47 |
| Msa0046740 | Msa1443780 | 0.802420 | 5.657741e-49 | -8.615850e-47 |
| Msa0056470 | Msa1443780 | 0.844579 | 6.926618e-59 | -8.615850e-47 |
| Msa0064350 | Msa1443780 | 0.845807 | 3.224962e-59 | -8.615850e-47 |
| Msa0064380 | Msa1443780 | 0.823143 | 1.622997e-53 | -8.615850e-47 |
| Msa0069330 | Msa1443780 | 0.827953 | 1.176384e-54 | -8.615850e-47 |
| Msa0076000 | Msa1443780 | 0.814550 | 1.455464e-51 | -8.615850e-47 |
| Msa0078650 | Msa1443780 | 0.830531 | 2.786453e-55 | -8.615850e-47 |
| Msa0083070 | Msa1443780 | 0.825380 | 4.837430e-54 | -8.615850e-47 |
| Msa0090360 | Msa1443780 | 0.820073 | 8.317123e-53 | -8.615850e-47 |
| Msa0101690 | Msa1443780 | 0.801795 | 7.605341e-49 | -8.615850e-47 |
| Msa0104550 | Msa1443780 | 0.829628 | 4.627649e-55 | -8.615850e-47 |
| Msa0120040 | Msa1443780 | -0.809210 | 2.117780e-50 | -8.615850e-47 |
| Msa1346730 | Msa1443780 | 0.814881 | 1.229219e-51 | -8.615850e-47 |
| Msa1353060 | Msa1443780 | 0.823001 | 1.751914e-53 | -8.615850e-47 |
| Msa1356440 | Msa1443780 | 0.805781 | 1.131240e-49 | -8.615850e-47 |
| Msa1361100 | Msa1443780 | 0.833623 | 4.794698e-56 | -8.615850e-47 |
| Msa1367590 | Msa1443780 | 0.833972 | 3.922126e-56 | -8.615850e-47 |
| Msa1367880 | Msa1443780 | 0.802546 | 5.329144e-49 | -8.615850e-47 |
| Msa1368120 | Msa1443780 | 0.804678 | 1.924629e-49 | -8.615850e-47 |
| Msa1370740 | Msa1443780 | 0.967029 | 1.021350e-126 | -8.615850e-47 |
| Msa1402420 | Msa1443780 | -0.800431 | 1.445870e-48 | -8.615850e-47 |
| Msa1404190 | Msa1443780 | 0.811622 | 6.385889e-51 | -8.615850e-47 |
| Msa1407460 | Msa1443780 | 0.801524 | 8.647034e-49 | -8.615850e-47 |
| Msa1418340 | Msa1443780 | 0.820413 | 6.951038e-53 | -8.615850e-47 |
| Msa1433390 | Msa1443780 | 0.818564 | 1.835472e-52 | -8.615850e-47 |
| Msa1443780 | Msa1451560 | 0.821160 | 4.680105e-53 | -8.615850e-47 |
| Msa1443780 | Msa1461280 | 0.827336 | 1.655251e-54 | -8.615850e-47 |
| Msa1443780 | Msa1465080 | 0.801094 | 1.058885e-48 | -8.615850e-47 |
| Msa0607050 | Msa1443780 | 0.806421 | 8.293940e-50 | -8.615850e-47 |
| Msa0610530 | Msa1443780 | 0.819525 | 1.109611e-52 | -8.615850e-47 |
| Msa0610560 | Msa1443780 | 0.811610 | 6.422230e-51 | -8.615850e-47 |
| Msa0612960 | Msa1443780 | 0.821889 | 3.176021e-53 | -8.615850e-47 |
| Msa0639310 | Msa1443780 | 0.828073 | 1.101060e-54 | -8.615850e-47 |
| Msa0647500 | Msa1443780 | 0.806042 | 9.969283e-50 | -8.615850e-47 |
| Msa0661300 | Msa1443780 | 0.835215 | 1.909886e-56 | -8.615850e-47 |
| Msa0662500 | Msa1443780 | 0.821087 | 4.863698e-53 | -8.615850e-47 |
| Msa0687630 | Msa1443780 | 0.821287 | 4.375209e-53 | -8.615850e-47 |
| Msa0689500 | Msa1443780 | 0.812302 | 4.539903e-51 | -8.615850e-47 |
| Msa0690150 | Msa1443780 | 0.832234 | 1.061754e-55 | -8.615850e-47 |
| Msa0692840 | Msa1443780 | 0.837040 | 6.570906e-57 | -8.615850e-47 |
| Msa0692940 | Msa1443780 | 0.808993 | 2.356579e-50 | -8.615850e-47 |
| Msa0709500 | Msa1443780 | 0.835051 | 2.101390e-56 | -8.615850e-47 |
| Msa0713820 | Msa1443780 | 0.829155 | 6.030797e-55 | -8.615850e-47 |
| Msa0746420 | Msa1443780 | 0.824492 | 7.837486e-54 | -8.615850e-47 |
| Msa0749760 | Msa1443780 | 0.828685 | 7.836502e-55 | -8.615850e-47 |
| Msa0750170 | Msa1443780 | 0.808816 | 2.572028e-50 | -8.615850e-47 |
| Msa0750880 | Msa1443780 | 0.825225 | 5.263801e-54 | -8.615850e-47 |
| Msa0756060 | Msa1443780 | 0.814466 | 1.519103e-51 | -8.615850e-47 |
| Msa0761940 | Msa1443780 | 0.830431 | 2.948404e-55 | -8.615850e-47 |
| Msa0763020 | Msa1443780 | 0.801565 | 8.479150e-49 | -8.615850e-47 |
| Msa0763070 | Msa1443780 | 0.809929 | 1.483743e-50 | -8.615850e-47 |
| Msa0784200 | Msa1443780 | 0.808357 | 3.222964e-50 | -8.615850e-47 |
| Msa0790000 | Msa1443780 | 0.820019 | 8.557915e-53 | -8.615850e-47 |
| Msa0790850 | Msa1443780 | 0.824318 | 8.614406e-54 | -8.615850e-47 |
| Msa0797750 | Msa1443780 | 0.816656 | 4.942374e-52 | -8.615850e-47 |
| Msa0818310 | Msa1443780 | 0.826077 | 3.307059e-54 | -8.615850e-47 |
| Msa0835280 | Msa1443780 | 0.823817 | 1.129146e-53 | -8.615850e-47 |
| Msa0841940 | Msa1443780 | 0.800214 | 1.600830e-48 | -8.615850e-47 |
| Msa0123560 | Msa1443780 | 0.801872 | 7.334036e-49 | -8.615850e-47 |
| Msa0125540 | Msa1443780 | 0.810978 | 8.808165e-51 | -8.615850e-47 |
| Msa0126370 | Msa1443780 | 0.821408 | 4.102998e-53 | -8.615850e-47 |
| Msa0129060 | Msa1443780 | 0.947881 | 2.830352e-106 | -8.615850e-47 |
| Msa0137840 | Msa1443780 | 0.821584 | 3.735766e-53 | -8.615850e-47 |
| Msa0140780 | Msa1443780 | 0.808528 | 2.963165e-50 | -8.615850e-47 |
| Msa0149200 | Msa1443780 | 0.805720 | 1.164884e-49 | -8.615850e-47 |
| Msa0150570 | Msa1443780 | 0.809683 | 1.675865e-50 | -8.615850e-47 |
| Msa0171290 | Msa1443780 | 0.836330 | 9.969953e-57 | -8.615850e-47 |
| Msa0174860 | Msa1443780 | 0.891605 | 3.409854e-74 | -8.615850e-47 |
| Msa0184040 | Msa1443780 | 0.822438 | 2.368825e-53 | -8.615850e-47 |
| Msa0191050 | Msa1443780 | 0.849154 | 3.880401e-60 | -8.615850e-47 |
| Msa0199880 | Msa1443780 | 0.818371 | 2.030192e-52 | -8.615850e-47 |
| Msa0204980 | Msa1443780 | 0.807924 | 3.984921e-50 | -8.615850e-47 |
| Msa0216240 | Msa1443780 | 0.816192 | 6.275390e-52 | -8.615850e-47 |
| Msa0229760 | Msa1443780 | 0.834177 | 3.484178e-56 | -8.615850e-47 |
| Msa0231980 | Msa1443780 | 0.805369 | 1.379944e-49 | -8.615850e-47 |
| Msa0233350 | Msa1443780 | 0.848150 | 7.363142e-60 | -8.615850e-47 |
| Msa1244600 | Msa1443780 | 0.805669 | 1.194127e-49 | -8.615850e-47 |
| Msa1251160 | Msa1443780 | 0.816251 | 6.088095e-52 | -8.615850e-47 |
| Msa1255040 | Msa1443780 | -0.814673 | 1.366456e-51 | -8.615850e-47 |
| Msa1267430 | Msa1443780 | 0.803322 | 3.684414e-49 | -8.615850e-47 |
| Msa1283170 | Msa1443780 | 0.827796 | 1.283607e-54 | -8.615850e-47 |
| Msa1284550 | Msa1443780 | 0.800645 | 1.307692e-48 | -8.615850e-47 |
| Msa1304820 | Msa1443780 | 0.824443 | 8.049545e-54 | -8.615850e-47 |
| Msa1305660 | Msa1443780 | 0.807769 | 4.299237e-50 | -8.615850e-47 |
| Msa1305710 | Msa1443780 | 0.814513 | 1.482874e-51 | -8.615850e-47 |
| Msa1307950 | Msa1443780 | 0.828627 | 8.093308e-55 | -8.615850e-47 |
| Msa1321630 | Msa1443780 | 0.810893 | 9.188380e-51 | -8.615850e-47 |
| Msa1331910 | Msa1443780 | 0.830779 | 2.422661e-55 | -8.615850e-47 |
| Msa1342900 | Msa1443780 | 0.806408 | 8.348088e-50 | -8.615850e-47 |
| Msa0366890 | Msa1443780 | 0.824991 | 5.979270e-54 | -8.615850e-47 |
| Msa0369450 | Msa1443780 | 0.830109 | 3.534089e-55 | -8.615850e-47 |
| Msa0372660 | Msa1443780 | 0.806364 | 8.527642e-50 | -8.615850e-47 |
| Msa0372670 | Msa1443780 | 0.802132 | 6.486342e-49 | -8.615850e-47 |
| Msa0376300 | Msa1443780 | 0.831789 | 1.367461e-55 | -8.615850e-47 |
| Msa0376310 | Msa1443780 | 0.834491 | 2.906786e-56 | -8.615850e-47 |
| Msa0380300 | Msa1443780 | 0.804119 | 2.516980e-49 | -8.615850e-47 |
| Msa0387730 | Msa1443780 | 0.849261 | 3.623169e-60 | -8.615850e-47 |
| Msa0388700 | Msa1443780 | 0.803727 | 3.036950e-49 | -8.615850e-47 |
| Msa0414800 | Msa1443780 | 0.804704 | 1.901468e-49 | -8.615850e-47 |
| Msa0438690 | Msa1443780 | 0.804874 | 1.752172e-49 | -8.615850e-47 |
| Msa0469990 | Msa1443780 | 0.808361 | 3.216397e-50 | -8.615850e-47 |
| Msa0471440 | Msa1443780 | 0.806938 | 6.451521e-50 | -8.615850e-47 |
| Msa0471590 | Msa1443780 | 0.807549 | 4.788534e-50 | -8.615850e-47 |
| Msa0474950 | Msa1443780 | 0.828929 | 6.839189e-55 | -8.615850e-47 |
| Msa0477080 | Msa1443780 | 0.802525 | 5.383927e-49 | -8.615850e-47 |
| Msa1010350 | Msa1443780 | 0.812522 | 4.064942e-51 | -8.615850e-47 |
| Msa1013040 | Msa1443780 | 0.800654 | 1.302021e-48 | -8.615850e-47 |
| Msa1013400 | Msa1443780 | 0.823051 | 1.705672e-53 | -8.615850e-47 |
| Msa1014420 | Msa1443780 | 0.801405 | 9.147075e-49 | -8.615850e-47 |
| Msa1040400 | Msa1443780 | 0.807461 | 4.999109e-50 | -8.615850e-47 |
| Msa1043390 | Msa1443780 | 0.819542 | 1.099499e-52 | -8.615850e-47 |
| Msa1043450 | Msa1443780 | 0.821269 | 4.416406e-53 | -8.615850e-47 |
| Msa1081150 | Msa1443780 | 0.816395 | 5.654262e-52 | -8.615850e-47 |
| Msa1083150 | Msa1443780 | 0.804444 | 2.153485e-49 | -8.615850e-47 |
| Msa1093530 | Msa1443780 | 0.814678 | 1.363356e-51 | -8.615850e-47 |
| Msa1101600 | Msa1443780 | 0.818608 | 1.793699e-52 | -8.615850e-47 |
| Msa0267970 | Msa1443780 | 0.813141 | 2.974845e-51 | -8.615850e-47 |
| Msa0280610 | Msa1443780 | 0.801345 | 9.409411e-49 | -8.615850e-47 |
| Msa0287650 | Msa1443780 | 0.817851 | 2.660787e-52 | -8.615850e-47 |
| Msa0300120 | Msa1443780 | 0.807862 | 4.107511e-50 | -8.615850e-47 |
| Msa0311700 | Msa1443780 | 0.818753 | 1.662952e-52 | -8.615850e-47 |
| Msa0314720 | Msa1443780 | 0.806011 | 1.011896e-49 | -8.615850e-47 |
| Msa1125760 | Msa1443780 | 0.828792 | 7.383867e-55 | -8.615850e-47 |
| Msa1126510 | Msa1443780 | 0.820237 | 7.626339e-53 | -8.615850e-47 |
| Msa1126770 | Msa1443780 | 0.805571 | 1.251862e-49 | -8.615850e-47 |
| Msa1127890 | Msa1443780 | 0.819603 | 1.065180e-52 | -8.615850e-47 |
| Msa1130980 | Msa1443780 | 0.818386 | 2.014107e-52 | -8.615850e-47 |
| Msa1165870 | Msa1443780 | 0.832321 | 1.010434e-55 | -8.615850e-47 |
| Msa1165920 | Msa1443780 | 0.812064 | 5.116540e-51 | -8.615850e-47 |
| Msa1165940 | Msa1443780 | 0.856332 | 3.454895e-62 | -8.615850e-47 |
| Msa1166330 | Msa1443780 | 0.814212 | 1.727966e-51 | -8.615850e-47 |
| Msa1166340 | Msa1443780 | 0.804453 | 2.144732e-49 | -8.615850e-47 |
| Msa1171360 | Msa1443780 | 0.835429 | 1.687043e-56 | -8.615850e-47 |
| Msa1187840 | Msa1443780 | 0.800475 | 1.416395e-48 | -8.615850e-47 |
| Msa1214890 | Msa1443780 | 0.819701 | 1.011402e-52 | -8.615850e-47 |
| Msa1218600 | Msa1443780 | 0.824753 | 6.804640e-54 | -8.615850e-47 |
| Msa0502100 | Msa1443780 | 0.807601 | 4.668494e-50 | -8.615850e-47 |
| Msa0513650 | Msa1443780 | 0.800221 | 1.595849e-48 | -8.615850e-47 |
| Msa0518390 | Msa1443780 | 0.827466 | 1.540666e-54 | -8.615850e-47 |
| Msa0518450 | Msa1443780 | 0.824665 | 7.138098e-54 | -8.615850e-47 |
| Msa0524500 | Msa1443780 | 0.825035 | 5.837668e-54 | -8.615850e-47 |
| Msa0548240 | Msa1443780 | 0.802977 | 4.342765e-49 | -8.615850e-47 |
| Msa0552810 | Msa1443780 | 0.838050 | 3.618898e-57 | -8.615850e-47 |
| Msa0556060 | Msa1443780 | 0.809416 | 1.912418e-50 | -8.615850e-47 |
| Msa0558230 | Msa1443780 | 0.800712 | 1.267052e-48 | -8.615850e-47 |
| Msa0578860 | Msa1443780 | 0.802852 | 4.609482e-49 | -8.615850e-47 |
| Msa0858770 | Msa1443780 | 0.823580 | 1.282910e-53 | -8.615850e-47 |
| Msa0869100 | Msa1443780 | 0.853704 | 2.003988e-61 | -8.615850e-47 |
| Msa0902760 | Msa1443780 | 0.814504 | 1.489635e-51 | -8.615850e-47 |
| Msa0933230 | Msa1443780 | 0.845335 | 4.330696e-59 | -8.615850e-47 |
| Msa0933310 | Msa1443780 | 0.868471 | 6.370561e-66 | -8.615850e-47 |
| Msa0968590 | Msa1443780 | 0.860737 | 1.676739e-63 | -8.615850e-47 |
| Msa0969630 | Msa1443780 | 0.802842 | 4.630693e-49 | -8.615850e-47 |
| Msa0970030 | Msa1443780 | 0.804141 | 2.491036e-49 | -8.615850e-47 |
| Msa0971090 | Msa1443780 | 0.851788 | 7.062250e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443780 | MtrunA17_Chr1g0195701 | 98.361 | 183 | 3 | 0 | 1 | 183 | 1 | 183 | 2.16e-131 | 365 |
| Msa1443780 | MtrunA17_Chr7g0269271 | 77.778 | 108 | 24 | 0 | 1 | 108 | 1 | 108 | 2.97e-59 | 184 |
| Msa1443780 | MtrunA17_Chr6g0465301 | 48.148 | 135 | 65 | 1 | 1 | 130 | 1 | 135 | 1.62e-40 | 135 |
| Msa1443780 | MtrunA17_Chr6g0460991 | 49.541 | 109 | 54 | 1 | 1 | 109 | 1 | 108 | 3.33e-34 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443780 | AT4G02450.2 | 61.600 | 125 | 45 | 2 | 1 | 123 | 1 | 124 | 1.43e-52 | 168 |
| Msa1443780 | AT4G02450.1 | 61.600 | 125 | 45 | 2 | 1 | 123 | 1 | 124 | 1.47e-52 | 168 |
| Msa1443780 | AT3G03773.1 | 48.252 | 143 | 68 | 4 | 1 | 143 | 1 | 137 | 3.71e-38 | 128 |
| Msa1443780 | AT3G03773.3 | 52.586 | 116 | 53 | 2 | 1 | 116 | 1 | 114 | 6.29e-38 | 127 |
| Msa1443780 | AT3G03773.2 | 47.552 | 143 | 69 | 4 | 1 | 143 | 55 | 191 | 2.86e-36 | 125 |
Find 72 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAAGTTGATTGGGATAAA+TGG | 0.226101 | tig0030516:-35063 | Msa1443780:CDS |
| GTATGCGTTGTACCTCGTTT+TGG | 0.292489 | tig0030516:+36563 | None:intergenic |
| CATAATACAAGCTAATGTTT+AGG | 0.316115 | tig0030516:+33508 | None:intergenic |
| TGAAGGAAAGACACGGTATC+TGG | 0.322168 | tig0030516:-33365 | Msa1443780:three_prime_UTR |
| CACATTATGTGAAAGTTGAT+TGG | 0.336982 | tig0030516:-35072 | Msa1443780:CDS |
| CTATGTCACGATTCAGTTGC+CGG | 0.340941 | tig0030516:-35610 | Msa1443780:CDS |
| ATGTTAAACGAAGAACATTC+TGG | 0.361010 | tig0030516:-36626 | None:intergenic |
| ATGTGCTTGAAGCAGCTTCC+TGG | 0.366179 | tig0030516:+33656 | None:intergenic |
| ATAATACAAGCTAATGTTTA+GGG | 0.373227 | tig0030516:+33509 | None:intergenic |
| TTGAGATGTTTATTTATTGA+AGG | 0.382394 | tig0030516:-33382 | Msa1443780:three_prime_UTR |
| GGACGGTGCTCTTGCCAGCT+TGG | 0.394866 | tig0030516:+33677 | None:intergenic |
| AGGTCTCGGTGACCTGGACT+TGG | 0.409814 | tig0030516:-34925 | Msa1443780:CDS |
| CTTGGGAGGGATGGATTTCT+CGG | 0.410768 | tig0030516:-34907 | Msa1443780:intron |
| AGTCTGACTGTAGTATCGTT+TGG | 0.426310 | tig0030516:-33570 | Msa1443780:three_prime_UTR |
| ACATTATGTGAAAGTTGATT+GGG | 0.435304 | tig0030516:-35071 | Msa1443780:CDS |
| CTTTGAGCCCACTTGACCTC+CGG | 0.445693 | tig0030516:+35645 | None:intergenic |
| AGCTGGCAAGAGCACCGTCC+AGG | 0.453170 | tig0030516:-33674 | Msa1443780:CDS |
| CATATTCTGTGTAGTGCAAA+AGG | 0.459449 | tig0030516:-35143 | Msa1443780:CDS |
| TCAAAACACCGTCTGGAGTA+AGG | 0.459550 | tig0030516:+35565 | None:intergenic |
| TTTATTAGGTCTCGGTGACC+TGG | 0.461080 | tig0030516:-34931 | Msa1443780:intron |
| AAGAACATTCTGGAAACAAC+AGG | 0.465456 | tig0030516:-36616 | Msa1443780:five_prime_UTR |
| GAAAGTTGATTGGGATAAAT+GGG | 0.470728 | tig0030516:-35062 | Msa1443780:CDS |
| GCTTGAATGCAGTCGTCATC+CGG | 0.473159 | tig0030516:-35664 | Msa1443780:intron |
| GTCGTCATCCGGAGGTCAAG+TGG | 0.482409 | tig0030516:-35653 | Msa1443780:CDS |
| CCTTGTCGAAGAGTGGCAAC+TGG | 0.486019 | tig0030516:+35499 | None:intergenic |
| TGACCTGGACTTGGGAGGGA+TGG | 0.491935 | tig0030516:-34916 | Msa1443780:CDS |
| GGAGGTCAAGTGGGCTCAAA+GGG | 0.493027 | tig0030516:-35643 | Msa1443780:CDS |
| TGCAAAAGGCAGAGGATGAA+TGG | 0.496195 | tig0030516:-35129 | Msa1443780:CDS |
| ACTATCGTACTTCAACTTGA+AGG | 0.498116 | tig0030516:+33468 | None:intergenic |
| ACAAGAGGGTAATGATAATG+AGG | 0.504951 | tig0030516:-33719 | Msa1443780:CDS |
| GCCAGCTTGGTCTCCAACCG+TGG | 0.507840 | tig0030516:+33690 | None:intergenic |
| CAGAGGATGAATGGTGGAAA+AGG | 0.507991 | tig0030516:-35120 | Msa1443780:CDS |
| CAGTTTAAGATCTTATACTC+AGG | 0.510705 | tig0030516:-33623 | Msa1443780:three_prime_UTR |
| AATCCATCCCTCCCAAGTCC+AGG | 0.516889 | tig0030516:+34913 | None:intergenic |
| CTCGGTGACCTGGACTTGGG+AGG | 0.517191 | tig0030516:-34921 | Msa1443780:CDS |
| CAATCAACTTTCACATAATG+TGG | 0.527025 | tig0030516:+35073 | None:intergenic |
| TTTGACGACGGTGATGATGA+AGG | 0.527145 | tig0030516:-34769 | Msa1443780:intron |
| CGGAGGTCAAGTGGGCTCAA+AGG | 0.538850 | tig0030516:-35644 | Msa1443780:CDS |
| TCGGTGACCTGGACTTGGGA+GGG | 0.538949 | tig0030516:-34920 | Msa1443780:CDS |
| AATGAGGGAGGTTCCACGGT+TGG | 0.540422 | tig0030516:-33703 | Msa1443780:CDS |
| TCCACGGTTGGAGACCAAGC+TGG | 0.546944 | tig0030516:-33691 | Msa1443780:CDS |
| AACGAGGTACAACGCATACA+AGG | 0.548721 | tig0030516:-36559 | Msa1443780:five_prime_UTR |
| CTGTGTAGTGCAAAAGGCAG+AGG | 0.555658 | tig0030516:-35137 | Msa1443780:CDS |
| TTTGTGCTGCAGCAATTTGA+GGG | 0.567193 | tig0030516:-34814 | Msa1443780:intron |
| AAAATTAACGTAGGAGTGAG+AGG | 0.580252 | tig0030516:-35166 | Msa1443780:CDS |
| GGGTGATGATGCAGTGGGTG+CGG | 0.586506 | tig0030516:-34794 | Msa1443780:CDS |
| GGTCTCGGTGACCTGGACTT+GGG | 0.589648 | tig0030516:-34924 | Msa1443780:CDS |
| CATTAGCTTGTATTATGATG+AGG | 0.593709 | tig0030516:-33502 | Msa1443780:three_prime_UTR |
| AAAAGGTTACTGAAAGCAGA+AGG | 0.595204 | tig0030516:-35103 | Msa1443780:CDS |
| TGATAATGAGGGAGGTTCCA+CGG | 0.595705 | tig0030516:-33707 | Msa1443780:CDS |
| TCGTCATCCGGAGGTCAAGT+GGG | 0.596383 | tig0030516:-35652 | Msa1443780:CDS |
| CAAGAGGGTAATGATAATGA+GGG | 0.603330 | tig0030516:-33718 | Msa1443780:CDS |
| CTTCGACAAGGTTAATGTAG+AGG | 0.606463 | tig0030516:-35487 | Msa1443780:intron |
| ACATTAACCTTGTCGAAGAG+TGG | 0.607273 | tig0030516:+35492 | None:intergenic |
| GTGGATGAAGATGAAGATGC+GGG | 0.610763 | tig0030516:-35040 | Msa1443780:intron |
| CCAGTTGCCACTCTTCGACA+AGG | 0.617754 | tig0030516:-35499 | Msa1443780:CDS |
| GTGGCAACTGGAGCTCATAG+AGG | 0.620616 | tig0030516:+35511 | None:intergenic |
| GTGGTCTTCAGCACCAGCAG+TGG | 0.621573 | tig0030516:+35533 | None:intergenic |
| CAGGAGAGCAAAATTAACGT+AGG | 0.633027 | tig0030516:-35175 | Msa1443780:CDS |
| TCAACTTTCACATAATGTGG+AGG | 0.635270 | tig0030516:+35076 | None:intergenic |
| GCTTGAAGCAGCTTCCTGGA+CGG | 0.652191 | tig0030516:+33660 | None:intergenic |
| AAAGTGAACCTTACTCCAGA+CGG | 0.655853 | tig0030516:-35573 | Msa1443780:CDS |
| GCAACTGGAGCTCATAGAGG+TGG | 0.662772 | tig0030516:+35514 | None:intergenic |
| GGTGGATGAAGATGAAGATG+CGG | 0.663693 | tig0030516:-35041 | Msa1443780:CDS |
| ATTTGAGGGTGATGATGCAG+TGG | 0.664488 | tig0030516:-34800 | Msa1443780:CDS |
| AAAGGTTACTGAAAGCAGAA+GGG | 0.668010 | tig0030516:-35102 | Msa1443780:CDS |
| TGAATGCAGTCGTCATCCGG+AGG | 0.670112 | tig0030516:-35661 | Msa1443780:intron |
| AGTTGATTGGGATAAATGGG+TGG | 0.672477 | tig0030516:-35059 | Msa1443780:CDS |
| GAGGGTAATGATAATGAGGG+AGG | 0.683148 | tig0030516:-33715 | Msa1443780:CDS |
| TTTGAGGGTGATGATGCAGT+GGG | 0.686057 | tig0030516:-34799 | Msa1443780:CDS |
| TATTTATTGAAGGAAAGACA+CGG | 0.700279 | tig0030516:-33372 | Msa1443780:three_prime_UTR |
| AAAAGGCAGAGGATGAATGG+TGG | 0.737688 | tig0030516:-35126 | Msa1443780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATTTTTGTTAAATTTATTT+TGG | - | tig0030516:34034-34053 | Msa1443780:intron | 10.0% |
| !!! | TTCATTTTTATGTTAAAATT+AGG | - | tig0030516:34178-34197 | Msa1443780:intron | 10.0% |
| !! | AATTTAACAAAAATGTTTCA+TGG | + | tig0030516:34029-34048 | None:intergenic | 15.0% |
| !! | TTTCTTTAATCTTAAACAAA+CGG | - | tig0030516:35953-35972 | Msa1443780:intron | 15.0% |
| !! | TGTGAATAGTTTAATTGAAA+TGG | - | tig0030516:33665-33684 | Msa1443780:CDS | 20.0% |
| !! | TAGATGGTTAATTCAATTTA+TGG | - | tig0030516:33852-33871 | Msa1443780:intron | 20.0% |
| !!! | TTTTATGTTAAAATTAGGCA+TGG | - | tig0030516:34183-34202 | Msa1443780:intron | 20.0% |
| !! | ACAGTTTATGATAAAAGATT+TGG | - | tig0030516:34232-34251 | Msa1443780:intron | 20.0% |
| !!! | TTTATGATAAAAGATTTGGT+GGG | - | tig0030516:34236-34255 | Msa1443780:intron | 20.0% |
| !! | TTAGAATGAATATGAAACTA+AGG | + | tig0030516:34622-34641 | None:intergenic | 20.0% |
| !!! | TGTAACTAATTTTCTTGTTA+AGG | - | tig0030516:34655-34674 | Msa1443780:intron | 20.0% |
| !!! | TTAGTTTTTCCAAGTTATAA+AGG | - | tig0030516:34969-34988 | Msa1443780:intron | 20.0% |
| !!! | TAGTTTTTCCAAGTTATAAA+GGG | - | tig0030516:34970-34989 | Msa1443780:intron | 20.0% |
| !! | TAAAAATACCCTTTATAACT+TGG | + | tig0030516:34981-35000 | None:intergenic | 20.0% |
| !!! | ATATCTAATGGTTTACTTTT+AGG | - | tig0030516:35439-35458 | Msa1443780:intron | 20.0% |
| !!! | TATCTAATGGTTTACTTTTA+GGG | - | tig0030516:35440-35459 | Msa1443780:intron | 20.0% |
| !! | CCAACAAGAATAAATTAATA+CGG | + | tig0030516:35479-35498 | None:intergenic | 20.0% |
| !! | TTCTTGTTGGAAAATTAAAT+AGG | - | tig0030516:35489-35508 | Msa1443780:CDS | 20.0% |
| !! | ATAATACAAGCTAATGTTTA+GGG | + | tig0030516:36450-36469 | None:intergenic | 20.0% |
| !! | TTGAGATGTTTATTTATTGA+AGG | - | tig0030516:36574-36593 | Msa1443780:five_prime_UTR | 20.0% |
| !!! | ATCTGGATTTTCTATATTTT+TGG | - | tig0030516:36608-36627 | Msa1443780:five_prime_UTR | 20.0% |
| !!! | TTAGGTGTTTTTGTTTCATA+TGG | - | tig0030516:33579-33598 | Msa1443780:three_prime_UTR | 25.0% |
| ! | CAATTAAACTATTCACAGTT+AGG | + | tig0030516:33662-33681 | None:intergenic | 25.0% |
| ! | GAATTGTAACTATCAAGAAT+CGG | - | tig0030516:33714-33733 | Msa1443780:CDS | 25.0% |
| ! | AATTGTAACTATCAAGAATC+GGG | - | tig0030516:33715-33734 | Msa1443780:CDS | 25.0% |
| !!! | TATTTTAAACGTGATTAACC+AGG | + | tig0030516:33811-33830 | None:intergenic | 25.0% |
| ! | ACACTGAAAATTGTGAAATT+GGG | + | tig0030516:33918-33937 | None:intergenic | 25.0% |
| !!! | ATTTTCTAGTGTCTATTCAA+AGG | - | tig0030516:34072-34091 | Msa1443780:intron | 25.0% |
| ! | TCTCATTCAATTCATGTAAA+GGG | + | tig0030516:34100-34119 | None:intergenic | 25.0% |
| ! | TTCTCATTCAATTCATGTAA+AGG | + | tig0030516:34101-34120 | None:intergenic | 25.0% |
| ! | ATGAATTGAATGAGAATTGA+TGG | - | tig0030516:34105-34124 | Msa1443780:intron | 25.0% |
| ! | GTTTATGATAAAAGATTTGG+TGG | - | tig0030516:34235-34254 | Msa1443780:intron | 25.0% |
| ! | GAGAAAACATTTCTAATTCA+TGG | - | tig0030516:34493-34512 | Msa1443780:intron | 25.0% |
| !! | TTTTCCAATGAGTTAAATCA+TGG | - | tig0030516:34552-34571 | Msa1443780:intron | 25.0% |
| !! | ACATTATGTGAAAGTTGATT+GGG | - | tig0030516:34885-34904 | Msa1443780:intron | 25.0% |
| ! | TACTTGACTATTATAAAGCA+TGG | - | tig0030516:35263-35282 | Msa1443780:intron | 25.0% |
| ! | TTGCATTTGTAGATTACATT+GGG | - | tig0030516:35321-35340 | Msa1443780:intron | 25.0% |
| !!! | ATCTAATGGTTTACTTTTAG+GGG | - | tig0030516:35441-35460 | Msa1443780:intron | 25.0% |
| ! | CCGTATTAATTTATTCTTGT+TGG | - | tig0030516:35476-35495 | Msa1443780:intron | 25.0% |
| ! | GAAAATTGAAATTGACTGTA+GGG | - | tig0030516:35563-35582 | Msa1443780:CDS | 25.0% |
| ! | AATAACTTAATCAGTTTCAC+TGG | + | tig0030516:35661-35680 | None:intergenic | 25.0% |
| !!! | TGTCAATTTTAACTTTTGGA+TGG | + | tig0030516:36098-36117 | None:intergenic | 25.0% |
| !!! | GGAATGTCAATTTTAACTTT+TGG | + | tig0030516:36102-36121 | None:intergenic | 25.0% |
| ! | ATATGACAATTAAGTTCCTT+AGG | + | tig0030516:36156-36175 | None:intergenic | 25.0% |
| ! | GAACTTAATTGTCATATTGT+TGG | - | tig0030516:36159-36178 | Msa1443780:intron | 25.0% |
| ! | CATAATACAAGCTAATGTTT+AGG | + | tig0030516:36451-36470 | None:intergenic | 25.0% |
| ! | TATTTATTGAAGGAAAGACA+CGG | - | tig0030516:36584-36603 | Msa1443780:five_prime_UTR | 25.0% |
| CTTCTCTCAAACAAAAAATG+AGG | - | tig0030516:33453-33472 | Msa1443780:intron | 30.0% | |
| ! | CTGAAAAATTGTAAAAGTGC+AGG | + | tig0030516:33503-33522 | None:intergenic | 30.0% |
| ACTATTCACAGTTAGGATTT+AGG | + | tig0030516:33655-33674 | None:intergenic | 30.0% | |
| ATTGTAACTATCAAGAATCG+GGG | - | tig0030516:33716-33735 | Msa1443780:CDS | 30.0% | |
| AATTAGTTCAGTTGAGTAGA+TGG | - | tig0030516:33836-33855 | Msa1443780:intron | 30.0% | |
| CACTGAAAATTGTGAAATTG+GGG | + | tig0030516:33917-33936 | None:intergenic | 30.0% | |
| CACACTGAAAATTGTGAAAT+TGG | + | tig0030516:33919-33938 | None:intergenic | 30.0% | |
| GTTAATTGCATGCATAATTG+TGG | + | tig0030516:33974-33993 | None:intergenic | 30.0% | |
| TATGTTAAAATTAGGCATGG+TGG | - | tig0030516:34186-34205 | Msa1443780:intron | 30.0% | |
| ATGTTAAAATTAGGCATGGT+GGG | - | tig0030516:34187-34206 | Msa1443780:intron | 30.0% | |
| CAAGCATTAGAAAATCAGAT+AGG | + | tig0030516:34277-34296 | None:intergenic | 30.0% | |
| !!! | ACTTTTGCATTTTTGGAATC+CGG | + | tig0030516:34368-34387 | None:intergenic | 30.0% |
| !! | AAGGTTCACTTTTGCATTTT+TGG | + | tig0030516:34375-34394 | None:intergenic | 30.0% |
| TTCTAATTCATGGATAGCAT+TGG | - | tig0030516:34503-34522 | Msa1443780:intron | 30.0% | |
| AATGCCATGATTTAACTCAT+TGG | + | tig0030516:34559-34578 | None:intergenic | 30.0% | |
| TAATACATGCATGCACTTAT+GGG | - | tig0030516:34582-34601 | Msa1443780:intron | 30.0% | |
| CAATCAACTTTCACATAATG+TGG | + | tig0030516:34886-34905 | None:intergenic | 30.0% | |
| ! | CACATTATGTGAAAGTTGAT+TGG | - | tig0030516:34884-34903 | Msa1443780:intron | 30.0% |
| ! | TGAAAGTTGATTGGGATAAA+TGG | - | tig0030516:34893-34912 | Msa1443780:intron | 30.0% |
| ! | GAAAGTTGATTGGGATAAAT+GGG | - | tig0030516:34894-34913 | Msa1443780:intron | 30.0% |
| CAACTGATTGTCTGTTTATT+AGG | - | tig0030516:35011-35030 | Msa1443780:intron | 30.0% | |
| ATTGTCTGTTTATTAGGTCT+CGG | - | tig0030516:35017-35036 | Msa1443780:intron | 30.0% | |
| CAAACAACATTACTAAGAGA+AGG | + | tig0030516:35110-35129 | None:intergenic | 30.0% | |
| CTGCAGCACAAAAATTAATT+AGG | + | tig0030516:35134-35153 | None:intergenic | 30.0% | |
| CTATTATAAAGCATGGTTGA+CGG | - | tig0030516:35270-35289 | Msa1443780:intron | 30.0% | |
| CTTGCATTTGTAGATTACAT+TGG | - | tig0030516:35320-35339 | Msa1443780:intron | 30.0% | |
| ! | ACTGCTATTTAAGATACTCT+TGG | - | tig0030516:35350-35369 | Msa1443780:intron | 30.0% |
| ! | CTGCTATTTAAGATACTCTT+GGG | - | tig0030516:35351-35370 | Msa1443780:intron | 30.0% |
| !! | TTTCATTTCAGTTGATGAGA+TGG | - | tig0030516:35523-35542 | Msa1443780:CDS | 30.0% |
| GGAAAATTGAAATTGACTGT+AGG | - | tig0030516:35562-35581 | Msa1443780:CDS | 30.0% | |
| !! | ATGTTTTAGGCTAAAGTTTG+TGG | - | tig0030516:35591-35610 | Msa1443780:CDS | 30.0% |
| TTAAAGCTATTCTATCACTC+AGG | + | tig0030516:35864-35883 | None:intergenic | 30.0% | |
| !! | GTGATAGAATAGCTTTAAAC+TGG | - | tig0030516:35866-35885 | Msa1443780:intron | 30.0% |
| ACTATGATCAAGATCAGATT+TGG | + | tig0030516:35896-35915 | None:intergenic | 30.0% | |
| TCAAAACCTGAAAAACAAGA+GGG | - | tig0030516:36223-36242 | Msa1443780:intron | 30.0% | |
| ! | CAGTTTAAGATCTTATACTC+AGG | - | tig0030516:36333-36352 | Msa1443780:intron | 30.0% |
| !! | CATTAGCTTGTATTATGATG+AGG | - | tig0030516:36454-36473 | Msa1443780:intron | 30.0% |
| TACAAGCTTGTATTATGATG+AGG | - | tig0030516:36512-36531 | Msa1443780:five_prime_UTR | 30.0% | |
| ! | AAGAACATTCTGGAAACAAC+AGG | - | tig0030516:33340-33359 | Msa1443780:three_prime_UTR | 35.0% |
| TCATCAAAAATCCCAAAACG+AGG | - | tig0030516:33381-33400 | Msa1443780:three_prime_UTR | 35.0% | |
| GTTCGATGCTTAGTTGTATT+AGG | - | tig0030516:33561-33580 | Msa1443780:three_prime_UTR | 35.0% | |
| !! | GGTGTTTTTGTTTCATATGG+TGG | - | tig0030516:33582-33601 | Msa1443780:three_prime_UTR | 35.0% |
| TTGTAACTATCAAGAATCGG+GGG | - | tig0030516:33717-33736 | Msa1443780:CDS | 35.0% | |
| ! | GTTGGAGGTGTAGAAAAAAT+GGG | + | tig0030516:33787-33806 | None:intergenic | 35.0% |
| ! | TGTTGGAGGTGTAGAAAAAA+TGG | + | tig0030516:33788-33807 | None:intergenic | 35.0% |
| GGTTAACTCAGTTGAGTATA+TGG | + | tig0030516:33953-33972 | None:intergenic | 35.0% | |
| TGCAATTAACTACTTGTCGA+AGG | - | tig0030516:33984-34003 | Msa1443780:intron | 35.0% | |
| CTAATACATGCATGCACTTA+TGG | - | tig0030516:34581-34600 | Msa1443780:intron | 35.0% | |
| TCAATCTCTGCTATTGTTTC+AGG | - | tig0030516:34762-34781 | Msa1443780:intron | 35.0% | |
| AAAATTAACGTAGGAGTGAG+AGG | - | tig0030516:34790-34809 | Msa1443780:CDS | 35.0% | |
| CATATTCTGTGTAGTGCAAA+AGG | - | tig0030516:34813-34832 | Msa1443780:intron | 35.0% | |
| AAAAGGTTACTGAAAGCAGA+AGG | - | tig0030516:34853-34872 | Msa1443780:intron | 35.0% | |
| AAAGGTTACTGAAAGCAGAA+GGG | - | tig0030516:34854-34873 | Msa1443780:intron | 35.0% | |
| TCAACTTTCACATAATGTGG+AGG | + | tig0030516:34883-34902 | None:intergenic | 35.0% | |
| CATTTGTAGATTACATTGGG+TGG | - | tig0030516:35324-35343 | Msa1443780:intron | 35.0% | |
| GGAAAACTTTCATCTTGCAT+TGG | - | tig0030516:35372-35391 | Msa1443780:intron | 35.0% | |
| !! | TTTCATCTTGCATTGGTTGA+TGG | - | tig0030516:35379-35398 | Msa1443780:intron | 35.0% |
| !!! | TCAGTTGATGAGATGGTTTT+TGG | - | tig0030516:35530-35549 | Msa1443780:CDS | 35.0% |
| !!! | GATGGTTTTTGGTAGACATT+TGG | - | tig0030516:35541-35560 | Msa1443780:CDS | 35.0% |
| ! | AAAGTTTGTGGCTTTTCTAG+TGG | - | tig0030516:35603-35622 | Msa1443780:CDS | 35.0% |
| ! | TGATCAAGATCAGATTTGGT+GGG | + | tig0030516:35892-35911 | None:intergenic | 35.0% |
| ATGATCAAGATCAGATTTGG+TGG | + | tig0030516:35893-35912 | None:intergenic | 35.0% | |
| AAACGGTAATAGATGGTGAA+GGG | + | tig0030516:35980-35999 | None:intergenic | 35.0% | |
| TAAACGGTAATAGATGGTGA+AGG | + | tig0030516:35981-36000 | None:intergenic | 35.0% | |
| GTCACTTAAACGGTAATAGA+TGG | + | tig0030516:35987-36006 | None:intergenic | 35.0% | |
| AGTCGTAAGAGTCACTTAAA+CGG | + | tig0030516:35997-36016 | None:intergenic | 35.0% | |
| GTCAAAACCTGAAAAACAAG+AGG | - | tig0030516:36222-36241 | Msa1443780:intron | 35.0% | |
| !!! | TCATTACCCTCTTGTTTTTC+AGG | + | tig0030516:36232-36251 | None:intergenic | 35.0% |
| ! | ACAAGAGGGTAATGATAATG+AGG | - | tig0030516:36237-36256 | Msa1443780:intron | 35.0% |
| ! | CAAGAGGGTAATGATAATGA+GGG | - | tig0030516:36238-36257 | Msa1443780:intron | 35.0% |
| ACTATCGTACTTCAACTTGA+AGG | + | tig0030516:36491-36510 | None:intergenic | 35.0% | |
| ! | TATGCGTTGTACCTCGTTTT+GGG | + | tig0030516:33395-33414 | None:intergenic | 40.0% |
| AAACGTGATTAACCAGGTGT+TGG | + | tig0030516:33805-33824 | None:intergenic | 40.0% | |
| ! | TAACTACTTGTCGAAGGTGT+AGG | - | tig0030516:33990-34009 | Msa1443780:intron | 40.0% |
| CAGTGCTAATTGAACAGTCA+TGG | - | tig0030516:34129-34148 | Msa1443780:intron | 40.0% | |
| AAAGTGAACCTTACTCCAGA+CGG | - | tig0030516:34383-34402 | Msa1443780:intron | 40.0% | |
| GAAAAAGTCAAAACACCGTC+TGG | + | tig0030516:34401-34420 | None:intergenic | 40.0% | |
| ACATTAACCTTGTCGAAGAG+TGG | + | tig0030516:34467-34486 | None:intergenic | 40.0% | |
| CTTCGACAAGGTTAATGTAG+AGG | - | tig0030516:34469-34488 | Msa1443780:intron | 40.0% | |
| CAGGAGAGCAAAATTAACGT+AGG | - | tig0030516:34781-34800 | Msa1443780:CDS | 40.0% | |
| AGTTGATTGGGATAAATGGG+TGG | - | tig0030516:34897-34916 | Msa1443780:intron | 40.0% | |
| ! | TTTTGTGCTGCAGCAATTTG+AGG | - | tig0030516:35141-35160 | Msa1443780:CDS | 40.0% |
| TTTGTGCTGCAGCAATTTGA+GGG | - | tig0030516:35142-35161 | Msa1443780:CDS | 40.0% | |
| CCAGACACAAAAGATGAAAC+AGG | + | tig0030516:35411-35430 | None:intergenic | 40.0% | |
| ! | CCTGTTTCATCTTTTGTGTC+TGG | - | tig0030516:35408-35427 | Msa1443780:intron | 40.0% |
| CTGGCTGACACTATATCTAA+TGG | - | tig0030516:35427-35446 | Msa1443780:intron | 40.0% | |
| ! | CTGTAGGGCAACTATGTTTT+AGG | - | tig0030516:35578-35597 | Msa1443780:CDS | 40.0% |
| ATATCATATCTTACCCCACC+TGG | - | tig0030516:35799-35818 | Msa1443780:intron | 40.0% | |
| TATCACTCAGGAATCCAGAA+TGG | + | tig0030516:35852-35871 | None:intergenic | 40.0% | |
| ! | GAGGCACTATAAACAACAGT+AGG | + | tig0030516:36123-36142 | None:intergenic | 40.0% |
| AGTCTGACTGTAGTATCGTT+TGG | - | tig0030516:36386-36405 | Msa1443780:intron | 40.0% | |
| CACTATCGTACTTCACTTGA+AGG | + | tig0030516:36549-36568 | None:intergenic | 40.0% | |
| ! | GTATGCGTTGTACCTCGTTT+TGG | + | tig0030516:33396-33415 | None:intergenic | 45.0% |
| AACGAGGTACAACGCATACA+AGG | - | tig0030516:33397-33416 | Msa1443780:three_prime_UTR | 45.0% | |
| ! | TTTTCTACACCTCCAACACC+TGG | - | tig0030516:33790-33809 | Msa1443780:intron | 45.0% |
| ! | GTCGAAGGTGTAGGAAAAGT+TGG | - | tig0030516:33999-34018 | Msa1443780:intron | 45.0% |
| CTATGTCACGATTCAGTTGC+CGG | - | tig0030516:34346-34365 | Msa1443780:intron | 45.0% | |
| ! | TCAAAACACCGTCTGGAGTA+AGG | + | tig0030516:34394-34413 | None:intergenic | 45.0% |
| !! | TTGACTTTTTCTGCCACTGC+TGG | - | tig0030516:34410-34429 | Msa1443780:intron | 45.0% |
| TGCAAAAGGCAGAGGATGAA+TGG | - | tig0030516:34827-34846 | Msa1443780:intron | 45.0% | |
| AAAAGGCAGAGGATGAATGG+TGG | - | tig0030516:34830-34849 | Msa1443780:intron | 45.0% | |
| ! | CAGAGGATGAATGGTGGAAA+AGG | - | tig0030516:34836-34855 | Msa1443780:intron | 45.0% |
| GGTGGATGAAGATGAAGATG+CGG | - | tig0030516:34915-34934 | Msa1443780:CDS | 45.0% | |
| GTGGATGAAGATGAAGATGC+GGG | - | tig0030516:34916-34935 | Msa1443780:CDS | 45.0% | |
| TTTATTAGGTCTCGGTGACC+TGG | - | tig0030516:35025-35044 | Msa1443780:intron | 45.0% | |
| ! | ATTTGAGGGTGATGATGCAG+TGG | - | tig0030516:35156-35175 | Msa1443780:CDS | 45.0% |
| ! | TTTGAGGGTGATGATGCAGT+GGG | - | tig0030516:35157-35176 | Msa1443780:CDS | 45.0% |
| ! | TTTGACGACGGTGATGATGA+AGG | - | tig0030516:35187-35206 | Msa1443780:intron | 45.0% |
| GACGGTACATGCATATGTTG+TGG | - | tig0030516:35288-35307 | Msa1443780:intron | 45.0% | |
| CAGGTTTGATTACCTGCATG+AGG | - | tig0030516:35769-35788 | Msa1443780:intron | 45.0% | |
| AATCCAGAATGGTGCAACTG+GGG | + | tig0030516:35841-35860 | None:intergenic | 45.0% | |
| GAATCCAGAATGGTGCAACT+GGG | + | tig0030516:35842-35861 | None:intergenic | 45.0% | |
| TTCCTTAGGTCTACAGCTTG+AGG | + | tig0030516:36142-36161 | None:intergenic | 45.0% | |
| ! | GAGGGTAATGATAATGAGGG+AGG | - | tig0030516:36241-36260 | Msa1443780:intron | 45.0% |
| ! | TGATAATGAGGGAGGTTCCA+CGG | - | tig0030516:36249-36268 | Msa1443780:intron | 45.0% |
| TGAAGGAAAGACACGGTATC+TGG | - | tig0030516:36591-36610 | Msa1443780:five_prime_UTR | 45.0% | |
| !! | CGTGATTAACCAGGTGTTGG+AGG | + | tig0030516:33802-33821 | None:intergenic | 50.0% |
| GCTTGAATGCAGTCGTCATC+CGG | - | tig0030516:34292-34311 | Msa1443780:intron | 50.0% | |
| CTGTGTAGTGCAAAAGGCAG+AGG | - | tig0030516:34819-34838 | Msa1443780:intron | 50.0% | |
| ! | CTTGGGAGGGATGGATTTCT+CGG | - | tig0030516:35049-35068 | Msa1443780:CDS | 50.0% |
| !! | ACTTTTAGGGGCGTGTCTGT+AGG | - | tig0030516:35453-35472 | Msa1443780:intron | 50.0% |
| AGTGAACTAGTAGCCTACGC+AGG | - | tig0030516:35750-35769 | Msa1443780:intron | 50.0% | |
| GCAGGTAATCAAACCTGCGT+AGG | + | tig0030516:35766-35785 | None:intergenic | 50.0% | |
| GATATCAAGCAGCCTCATGC+AGG | + | tig0030516:35784-35803 | None:intergenic | 50.0% | |
| CATATCTTACCCCACCTGGA+TGG | - | tig0030516:35803-35822 | Msa1443780:intron | 50.0% | |
| ATCCAGAATGGTGCAACTGG+GGG | + | tig0030516:35840-35859 | None:intergenic | 50.0% | |
| GGAATCCAGAATGGTGCAAC+TGG | + | tig0030516:35843-35862 | None:intergenic | 50.0% | |
| TGCCTCAAGCTGTAGACCTA+AGG | - | tig0030516:36137-36156 | Msa1443780:intron | 50.0% | |
| ATGTGCTTGAAGCAGCTTCC+TGG | + | tig0030516:36303-36322 | None:intergenic | 50.0% | |
| TGAATGCAGTCGTCATCCGG+AGG | - | tig0030516:34295-34314 | Msa1443780:intron | 55.0% | |
| TCGTCATCCGGAGGTCAAGT+GGG | - | tig0030516:34304-34323 | Msa1443780:intron | 55.0% | |
| CTTTGAGCCCACTTGACCTC+CGG | + | tig0030516:34314-34333 | None:intergenic | 55.0% | |
| ! | GGAGGTCAAGTGGGCTCAAA+GGG | - | tig0030516:34313-34332 | Msa1443780:intron | 55.0% |
| GCAACTGGAGCTCATAGAGG+TGG | + | tig0030516:34445-34464 | None:intergenic | 55.0% | |
| GTGGCAACTGGAGCTCATAG+AGG | + | tig0030516:34448-34467 | None:intergenic | 55.0% | |
| CCTTGTCGAAGAGTGGCAAC+TGG | + | tig0030516:34460-34479 | None:intergenic | 55.0% | |
| CCAGTTGCCACTCTTCGACA+AGG | - | tig0030516:34457-34476 | Msa1443780:intron | 55.0% | |
| AATCCATCCCTCCCAAGTCC+AGG | + | tig0030516:35046-35065 | None:intergenic | 55.0% | |
| !! | GTGGGTGCGGATTTTGACGA+CGG | - | tig0030516:35175-35194 | Msa1443780:CDS | 55.0% |
| AACACGGTAGCCATCCAGGT+GGG | + | tig0030516:35816-35835 | None:intergenic | 55.0% | |
| TAACACGGTAGCCATCCAGG+TGG | + | tig0030516:35817-35836 | None:intergenic | 55.0% | |
| TGGTGCAACTGGGGGTAACA+CGG | + | tig0030516:35832-35851 | None:intergenic | 55.0% | |
| TACCCCCAGTTGCACCATTC+TGG | - | tig0030516:35835-35854 | Msa1443780:intron | 55.0% | |
| AATGAGGGAGGTTCCACGGT+TGG | - | tig0030516:36253-36272 | Msa1443780:intron | 55.0% | |
| GCTTGAAGCAGCTTCCTGGA+CGG | + | tig0030516:36299-36318 | None:intergenic | 55.0% | |
| GTCGTCATCCGGAGGTCAAG+TGG | - | tig0030516:34303-34322 | Msa1443780:intron | 60.0% | |
| ! | CGGAGGTCAAGTGGGCTCAA+AGG | - | tig0030516:34312-34331 | Msa1443780:intron | 60.0% |
| GTGGTCTTCAGCACCAGCAG+TGG | + | tig0030516:34426-34445 | None:intergenic | 60.0% | |
| AGGTCTCGGTGACCTGGACT+TGG | - | tig0030516:35031-35050 | Msa1443780:intron | 60.0% | |
| GGTCTCGGTGACCTGGACTT+GGG | - | tig0030516:35032-35051 | Msa1443780:intron | 60.0% | |
| TCGGTGACCTGGACTTGGGA+GGG | - | tig0030516:35036-35055 | Msa1443780:intron | 60.0% | |
| TGACCTGGACTTGGGAGGGA+TGG | - | tig0030516:35040-35059 | Msa1443780:intron | 60.0% | |
| ! | GGGTGATGATGCAGTGGGTG+CGG | - | tig0030516:35162-35181 | Msa1443780:CDS | 60.0% |
| ACACGGTAGCCATCCAGGTG+GGG | + | tig0030516:35815-35834 | None:intergenic | 60.0% | |
| GGGTAACACGGTAGCCATCC+AGG | + | tig0030516:35820-35839 | None:intergenic | 60.0% | |
| TCCACGGTTGGAGACCAAGC+TGG | - | tig0030516:36265-36284 | Msa1443780:intron | 60.0% | |
| CTCGGTGACCTGGACTTGGG+AGG | - | tig0030516:35035-35054 | Msa1443780:intron | 65.0% | |
| GCCAGCTTGGTCTCCAACCG+TGG | + | tig0030516:36269-36288 | None:intergenic | 65.0% | |
| GGACGGTGCTCTTGCCAGCT+TGG | + | tig0030516:36282-36301 | None:intergenic | 65.0% | |
| !! | AGCTGGCAAGAGCACCGTCC+AGG | - | tig0030516:36282-36301 | Msa1443780:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030516 | gene | 33339 | 36639 | 33339 | ID=Msa1443780;Name=Msa1443780 |
| tig0030516 | mRNA | 33339 | 36639 | 33339 | ID=Msa1443780-mRNA-1;Parent=Msa1443780;Name=Msa1443780-mRNA-1;_AED=0.06;_eAED=0.06;_QI=131|1|1|1|0.83|0.71|7|258|183 |
| tig0030516 | exon | 33339 | 33420 | 33339 | ID=Msa1443780-mRNA-1:exon:14129;Parent=Msa1443780-mRNA-1 |
| tig0030516 | exon | 33478 | 33766 | 33478 | ID=Msa1443780-mRNA-1:exon:14128;Parent=Msa1443780-mRNA-1 |
| tig0030516 | exon | 34770 | 34824 | 34770 | ID=Msa1443780-mRNA-1:exon:14127;Parent=Msa1443780-mRNA-1 |
| tig0030516 | exon | 34908 | 34945 | 34908 | ID=Msa1443780-mRNA-1:exon:14126;Parent=Msa1443780-mRNA-1 |
| tig0030516 | exon | 35041 | 35194 | 35041 | ID=Msa1443780-mRNA-1:exon:14125;Parent=Msa1443780-mRNA-1 |
| tig0030516 | exon | 35488 | 35674 | 35488 | ID=Msa1443780-mRNA-1:exon:14124;Parent=Msa1443780-mRNA-1 |
| tig0030516 | exon | 36504 | 36639 | 36504 | ID=Msa1443780-mRNA-1:exon:14123;Parent=Msa1443780-mRNA-1 |
| tig0030516 | five_prime_UTR | 36509 | 36639 | 36509 | ID=Msa1443780-mRNA-1:five_prime_utr;Parent=Msa1443780-mRNA-1 |
| tig0030516 | CDS | 36504 | 36508 | 36504 | ID=Msa1443780-mRNA-1:cds;Parent=Msa1443780-mRNA-1 |
| tig0030516 | CDS | 35488 | 35674 | 35488 | ID=Msa1443780-mRNA-1:cds;Parent=Msa1443780-mRNA-1 |
| tig0030516 | CDS | 35041 | 35194 | 35041 | ID=Msa1443780-mRNA-1:cds;Parent=Msa1443780-mRNA-1 |
| tig0030516 | CDS | 34908 | 34945 | 34908 | ID=Msa1443780-mRNA-1:cds;Parent=Msa1443780-mRNA-1 |
| tig0030516 | CDS | 34770 | 34824 | 34770 | ID=Msa1443780-mRNA-1:cds;Parent=Msa1443780-mRNA-1 |
| tig0030516 | CDS | 33654 | 33766 | 33654 | ID=Msa1443780-mRNA-1:cds;Parent=Msa1443780-mRNA-1 |
| tig0030516 | three_prime_UTR | 33478 | 33653 | 33478 | ID=Msa1443780-mRNA-1:three_prime_utr;Parent=Msa1443780-mRNA-1 |
| tig0030516 | three_prime_UTR | 33339 | 33420 | 33339 | ID=Msa1443780-mRNA-1:three_prime_utr;Parent=Msa1443780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
