AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1451550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451550 MtrunA17_Chr8g0360291 97.674 129 3 0 1 129 1 129 2.65e-91 259
Msa1451550 MtrunA17_Chr2g0316921 70.312 128 38 0 1 128 1 128 3.46e-63 189
Msa1451550 MtrunA17_Chr4g0046851 57.812 128 52 1 1 128 1 126 3.99e-49 153
Msa1451550 MtrunA17_Chr3g0113291 52.344 128 61 0 1 128 24 151 2.81e-46 147
Msa1451550 MtrunA17_Chr7g0242231 57.273 110 47 0 1 110 1 110 1.75e-44 141
Msa1451550 MtrunA17_Chr5g0436971 59.091 110 45 0 1 110 1 110 4.62e-44 140
Msa1451550 MtrunA17_Chr2g0316891 69.412 85 26 0 44 128 42 126 1.24e-38 126
Msa1451550 MtrunA17_Chr1g0188931 45.361 97 53 0 12 108 8 104 1.09e-31 108
Msa1451550 MtrunA17_Chr3g0127211 47.423 97 51 0 12 108 8 104 1.98e-31 107
Msa1451550 MtrunA17_Chr8g0346501 42.857 98 56 0 9 106 5 102 1.71e-26 95.1
Msa1451550 MtrunA17_Chr1g0188951 42.623 61 35 0 48 108 1 61 4.23e-15 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451550 AT5G53940.1 69.531 128 39 0 1 128 1 128 5.33e-62 186
Msa1451550 AT2G40110.1 55.814 129 56 1 1 128 1 129 2.01e-47 149
Msa1451550 AT3G08990.2 51.562 128 62 0 1 128 1 128 5.16e-47 148
Msa1451550 AT3G08990.1 51.562 128 62 0 1 128 1 128 5.16e-47 148
Msa1451550 AT3G08990.3 51.562 128 62 0 1 128 1 128 5.16e-47 148
Msa1451550 AT2G40110.2 64.706 102 36 0 1 102 1 102 1.48e-46 146
Msa1451550 AT3G55890.4 58.095 105 44 0 1 105 1 105 6.50e-42 135
Msa1451550 AT3G55890.1 58.095 105 44 0 1 105 1 105 6.50e-42 135
Msa1451550 AT3G11230.1 50.781 128 63 0 1 128 1 128 2.08e-41 134
Msa1451550 AT3G55890.3 59.406 101 41 0 1 101 1 101 2.28e-41 133
Msa1451550 AT3G55890.2 59.406 101 41 0 1 101 1 101 2.28e-41 133
Msa1451550 AT3G11230.2 50.781 128 63 0 1 128 34 161 7.89e-41 134
Msa1451550 AT3G11230.4 57.843 102 43 0 1 102 1 102 1.29e-39 129
Msa1451550 AT3G11230.3 57.843 102 43 0 1 102 34 135 2.88e-39 129
Msa1451550 AT2G40110.4 61.446 83 32 0 1 83 1 83 1.94e-35 117
Msa1451550 AT2G40110.3 61.446 83 32 0 1 83 1 83 1.94e-35 117
Msa1451550 AT4G27745.2 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1451550 AT4G27745.3 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1451550 AT4G27745.1 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1451550 AT4G27745.4 45.192 104 57 0 5 108 1 104 5.94e-31 107
Msa1451550 AT4G27740.1 39.130 92 56 0 14 105 10 101 6.48e-23 86.7

Find 43 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAAAGAGCGATGCTTTC+AGG 0.190195 tig0033459:-2681 Msa1451550:CDS
ACTTTCCCTCTTTGTACTTT+TGG 0.194241 tig0033459:+2446 None:intergenic
CTCATAGATGGCTAAGGATA+TGG 0.296863 tig0033459:-2020 Msa1451550:three_prime_UTR
ACTTCCTCAAGATTCATAAA+AGG 0.314442 tig0033459:+3579 None:intergenic
GAGCTGGATGGCAGAGTTTA+CGG 0.331875 tig0033459:-3503 Msa1451550:CDS
TGTCGCTGCGGTCAGATAAT+TGG 0.336845 tig0033459:-2630 Msa1451550:CDS
GGGGACGAAGTTAGATAATA+TGG 0.346308 tig0033459:-1798 Msa1451550:three_prime_UTR
AATGAAATAGCAAAACAAAT+TGG 0.357882 tig0033459:+2132 None:intergenic
TCCACTGAATTATGTGTTGA+GGG 0.392825 tig0033459:-2288 Msa1451550:CDS
GAGTGATACTGAAGATGATT+AGG 0.429995 tig0033459:-2253 Msa1451550:exon
GGAAGGATCGTTGATGAAAT+CGG 0.431542 tig0033459:-2315 Msa1451550:CDS
GAGCGGTGACATCAATCAAA+TGG 0.436224 tig0033459:-3543 Msa1451550:exon
ACCGCCAGTTTCCTCATAGA+TGG 0.443843 tig0033459:-2032 Msa1451550:three_prime_UTR
TTAGCCATCTATGAGGAAAC+TGG 0.448525 tig0033459:+2028 None:intergenic
CTCCACTGAATTATGTGTTG+AGG 0.454787 tig0033459:-2289 Msa1451550:CDS
ATACTTACACATTATTGAAA+AGG 0.455887 tig0033459:+3298 None:intergenic
TTTCCACTGATCTCATCTCC+AGG 0.460967 tig0033459:-3451 Msa1451550:CDS
GAAAAGCCAAAAGTACAAAG+AGG 0.465104 tig0033459:-2452 Msa1451550:CDS
AGGGAAAGTTTGTTCTTGAA+AGG 0.474035 tig0033459:-2432 Msa1451550:intron
TGGAAAGAGCGATGCTTTCA+GGG 0.476055 tig0033459:-2680 Msa1451550:CDS
AGCGGTGACATCAATCAAAT+GGG 0.480919 tig0033459:-3542 Msa1451550:exon
AGATTAAGATGAACCAGGGC+AGG 0.485254 tig0033459:+3615 None:intergenic
TGTGTAATTCGTGTATCAAA+AGG 0.485848 tig0033459:-2062 Msa1451550:three_prime_UTR
AATAGTAATACTCCCTGCCC+TGG 0.535884 tig0033459:-3628 Msa1451550:five_prime_UTR
AAGTGAAGAAGAAGAGTGAG+CGG 0.553078 tig0033459:-3560 Msa1451550:five_prime_UTR
ATTCGTGTATCAAAAGGAGA+TGG 0.569514 tig0033459:-2056 Msa1451550:three_prime_UTR
AAAAGCCAAAAGTACAAAGA+GGG 0.574439 tig0033459:-2451 Msa1451550:CDS
TTCCACTGATCTCATCTCCA+GGG 0.580481 tig0033459:-3450 Msa1451550:intron
GCTGCGGTCAGATAATTGGC+TGG 0.590004 tig0033459:-2626 Msa1451550:CDS
CACAGTGTGAACTTCACTAG+TGG 0.591434 tig0033459:-2711 Msa1451550:intron
GATTAAGATGAACCAGGGCA+GGG 0.595551 tig0033459:+3616 None:intergenic
CTTCACTAGTGGAGAAGTGG+TGG 0.595583 tig0033459:-2700 Msa1451550:CDS
TCTCTCATAGGAAACTGTGC+AGG 0.598241 tig0033459:-2476 Msa1451550:intron
AGTTTCCTCATAGATGGCTA+AGG 0.601151 tig0033459:-2026 Msa1451550:three_prime_UTR
TGAGATCAGTGGAAAGAGCA+AGG 0.604806 tig0033459:+3459 None:intergenic
GAAAGAGATTAAGATGAACC+AGG 0.605587 tig0033459:+3610 None:intergenic
CATATCCTTAGCCATCTATG+AGG 0.622869 tig0033459:+2021 None:intergenic
GCCCTCAACACATAATTCAG+TGG 0.637258 tig0033459:+2287 None:intergenic
AAAGAGATTAAGATGAACCA+GGG 0.646469 tig0033459:+3611 None:intergenic
TACCCTGGAGATGAGATCAG+TGG 0.654916 tig0033459:+3448 None:intergenic
GAACTTCACTAGTGGAGAAG+TGG 0.657506 tig0033459:-2703 Msa1451550:CDS
GCCATCTATGAGGAAACTGG+CGG 0.672225 tig0033459:+2031 None:intergenic
GCGGTGACATCAATCAAATG+GGG 0.714397 tig0033459:-3541 Msa1451550:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCAATTTTTTTGGTTAATT+AGG - tig0033459:2047-2066 Msa1451550:three_prime_UTR 15.0%
!! ATACAATCTAATTCTAATAT+CGG + tig0033459:2634-2653 None:intergenic 15.0%
!!! CAAATACAAAAGATTTTAAT+AGG + tig0033459:3223-3242 None:intergenic 15.0%
!!! TTAAAATCTTTTGTATTTGT+TGG - tig0033459:3224-3243 Msa1451550:intron 15.0%
!!! TTCAATTTTTTTGGTTAATT+AGG - tig0033459:2047-2066 Msa1451550:three_prime_UTR 15.0%
!! ATACAATCTAATTCTAATAT+CGG + tig0033459:2634-2653 None:intergenic 15.0%
!!! CAAATACAAAAGATTTTAAT+AGG + tig0033459:3223-3242 None:intergenic 15.0%
!!! TTAAAATCTTTTGTATTTGT+TGG - tig0033459:3224-3243 Msa1451550:intron 15.0%
!! TTAACCAAAAAAATTGAAGA+AGG + tig0033459:2045-2064 None:intergenic 20.0%
!! ATACTTACACATTATTGAAA+AGG + tig0033459:2155-2174 None:intergenic 20.0%
!!! GACAGTTTTATTATCAATAA+TGG - tig0033459:2242-2261 Msa1451550:exon 20.0%
!! TCAATAATGGTATTATAGTA+AGG - tig0033459:2255-2274 Msa1451550:CDS 20.0%
!!! AATGCAATTTTATTTTCAAC+TGG + tig0033459:2311-2330 None:intergenic 20.0%
!! AATTGTATGTTAAGTTATAC+TGG - tig0033459:2428-2447 Msa1451550:intron 20.0%
!! ATTGTATGTTAAGTTATACT+GGG - tig0033459:2429-2448 Msa1451550:intron 20.0%
!! AATGAAATAGCAAAACAAAT+TGG + tig0033459:3321-3340 None:intergenic 20.0%
!! TTAACCAAAAAAATTGAAGA+AGG + tig0033459:2045-2064 None:intergenic 20.0%
!! ATACTTACACATTATTGAAA+AGG + tig0033459:2155-2174 None:intergenic 20.0%
!!! GACAGTTTTATTATCAATAA+TGG - tig0033459:2242-2261 Msa1451550:exon 20.0%
!! TCAATAATGGTATTATAGTA+AGG - tig0033459:2255-2274 Msa1451550:CDS 20.0%
!!! AATGCAATTTTATTTTCAAC+TGG + tig0033459:2311-2330 None:intergenic 20.0%
!! AATTGTATGTTAAGTTATAC+TGG - tig0033459:2428-2447 Msa1451550:intron 20.0%
!! ATTGTATGTTAAGTTATACT+GGG - tig0033459:2429-2448 Msa1451550:intron 20.0%
!! AATGAAATAGCAAAACAAAT+TGG + tig0033459:3321-3340 None:intergenic 20.0%
!!! TGATCCTTCTTCAATTTTTT+TGG - tig0033459:2038-2057 Msa1451550:three_prime_UTR 25.0%
! AGAAGAAAAGCAAACAATAA+GGG + tig0033459:2100-2119 None:intergenic 25.0%
!!! CATTTAAGATTTGTTACTGA+TGG + tig0033459:2205-2224 None:intergenic 25.0%
! GATAAGTATTTCAACATTCA+GGG + tig0033459:2554-2573 None:intergenic 25.0%
! AGATAAGTATTTCAACATTC+AGG + tig0033459:2555-2574 None:intergenic 25.0%
! TTTGTAAAAATAAGAGAGGA+TGG + tig0033459:2868-2887 None:intergenic 25.0%
!! TCGATTTGTAAAAATAAGAG+AGG + tig0033459:2872-2891 None:intergenic 25.0%
! ATCAGTAAAAACACACATTA+AGG + tig0033459:3085-3104 None:intergenic 25.0%
!!! ATCTTTTGTATTTGTTGGAT+CGG - tig0033459:3229-3248 Msa1451550:intron 25.0%
!!! TCATGGAAGTATTTTAACAA+CGG + tig0033459:3458-3477 None:intergenic 25.0%
!!! TGATCCTTCTTCAATTTTTT+TGG - tig0033459:2038-2057 Msa1451550:three_prime_UTR 25.0%
! AGAAGAAAAGCAAACAATAA+GGG + tig0033459:2100-2119 None:intergenic 25.0%
!!! CATTTAAGATTTGTTACTGA+TGG + tig0033459:2205-2224 None:intergenic 25.0%
! GATAAGTATTTCAACATTCA+GGG + tig0033459:2554-2573 None:intergenic 25.0%
! AGATAAGTATTTCAACATTC+AGG + tig0033459:2555-2574 None:intergenic 25.0%
! TTTGTAAAAATAAGAGAGGA+TGG + tig0033459:2868-2887 None:intergenic 25.0%
!! TCGATTTGTAAAAATAAGAG+AGG + tig0033459:2872-2891 None:intergenic 25.0%
! ATCAGTAAAAACACACATTA+AGG + tig0033459:3085-3104 None:intergenic 25.0%
!!! ATCTTTTGTATTTGTTGGAT+CGG - tig0033459:3229-3248 Msa1451550:intron 25.0%
!!! TCATGGAAGTATTTTAACAA+CGG + tig0033459:3458-3477 None:intergenic 25.0%
AAAGAGATTAAGATGAACCA+GGG + tig0033459:1842-1861 None:intergenic 30.0%
! TGTACCTTTTATGAATCTTG+AGG - tig0033459:1867-1886 Msa1451550:intron 30.0%
ACTTCCTCAAGATTCATAAA+AGG + tig0033459:1874-1893 None:intergenic 30.0%
AAACAATAAGGGTTAACGAA+TGG + tig0033459:2089-2108 None:intergenic 30.0%
GAGAAGAAAAGCAAACAATA+AGG + tig0033459:2101-2120 None:intergenic 30.0%
!! TATTGTTTGCTTTTCTTCTC+AGG - tig0033459:2101-2120 Msa1451550:three_prime_UTR 30.0%
!! ATTGTTTGCTTTTCTTCTCA+GGG - tig0033459:2102-2121 Msa1451550:three_prime_UTR 30.0%
! TTTAGAAGGATCAAAAGTAC+TGG + tig0033459:2946-2965 None:intergenic 30.0%
TAAAATTGCATCTCTCTCAT+AGG - tig0033459:2962-2981 Msa1451550:intron 30.0%
! AAAAGCCAAAAGTACAAAGA+GGG - tig0033459:2999-3018 Msa1451550:intron 30.0%
!! TCTTTTGTATTTGTTGGATC+GGG - tig0033459:3230-3249 Msa1451550:intron 30.0%
! TCTGATTCTGAACATTTTCA+AGG + tig0033459:3297-3316 None:intergenic 30.0%
TGTGTAATTCGTGTATCAAA+AGG - tig0033459:3388-3407 Msa1451550:intron 30.0%
AAAGAGATTAAGATGAACCA+GGG + tig0033459:1842-1861 None:intergenic 30.0%
! TGTACCTTTTATGAATCTTG+AGG - tig0033459:1867-1886 Msa1451550:intron 30.0%
ACTTCCTCAAGATTCATAAA+AGG + tig0033459:1874-1893 None:intergenic 30.0%
AAACAATAAGGGTTAACGAA+TGG + tig0033459:2089-2108 None:intergenic 30.0%
GAGAAGAAAAGCAAACAATA+AGG + tig0033459:2101-2120 None:intergenic 30.0%
!! TATTGTTTGCTTTTCTTCTC+AGG - tig0033459:2101-2120 Msa1451550:three_prime_UTR 30.0%
!! ATTGTTTGCTTTTCTTCTCA+GGG - tig0033459:2102-2121 Msa1451550:three_prime_UTR 30.0%
! TTTAGAAGGATCAAAAGTAC+TGG + tig0033459:2946-2965 None:intergenic 30.0%
TAAAATTGCATCTCTCTCAT+AGG - tig0033459:2962-2981 Msa1451550:intron 30.0%
! AAAAGCCAAAAGTACAAAGA+GGG - tig0033459:2999-3018 Msa1451550:intron 30.0%
!! TCTTTTGTATTTGTTGGATC+GGG - tig0033459:3230-3249 Msa1451550:intron 30.0%
! TCTGATTCTGAACATTTTCA+AGG + tig0033459:3297-3316 None:intergenic 30.0%
TGTGTAATTCGTGTATCAAA+AGG - tig0033459:3388-3407 Msa1451550:intron 30.0%
GAAAGAGATTAAGATGAACC+AGG + tig0033459:1843-1862 None:intergenic 35.0%
CATGATATGATATGATACCC+TGG + tig0033459:2020-2039 None:intergenic 35.0%
! CAGGGATTTTATTGTCATAG+AGG - tig0033459:2120-2139 Msa1451550:three_prime_UTR 35.0%
CTCAACAAATTGAAATGCCT+CGG + tig0033459:2397-2416 None:intergenic 35.0%
TATACTGGGATTGTTGTAAC+TGG - tig0033459:2443-2462 Msa1451550:CDS 35.0%
! TGTCAGTTTTCATGGTTGAA+TGG - tig0033459:2472-2491 Msa1451550:intron 35.0%
! AGTTTTCATGGTTGAATGGT+GGG - tig0033459:2476-2495 Msa1451550:intron 35.0%
!! GATATATTTTGTTGTCGCTG+CGG - tig0033459:2808-2827 Msa1451550:intron 35.0%
GTAAAAATAAGAGAGGATGG+TGG + tig0033459:2865-2884 None:intergenic 35.0%
! GAGAGAGATGCAATTTTAGA+AGG + tig0033459:2960-2979 None:intergenic 35.0%
! GAAAAGCCAAAAGTACAAAG+AGG - tig0033459:2998-3017 Msa1451550:intron 35.0%
! ACTTTCCCTCTTTGTACTTT+TGG + tig0033459:3007-3026 None:intergenic 35.0%
! AGGGAAAGTTTGTTCTTGAA+AGG - tig0033459:3018-3037 Msa1451550:intron 35.0%
TCCACTGAATTATGTGTTGA+GGG - tig0033459:3162-3181 Msa1451550:intron 35.0%
GAGTGATACTGAAGATGATT+AGG - tig0033459:3197-3216 Msa1451550:intron 35.0%
ATTCGTGTATCAAAAGGAGA+TGG - tig0033459:3394-3413 Msa1451550:intron 35.0%
AATACTTCCATGACATTGCT+TGG - tig0033459:3465-3484 Msa1451550:CDS 35.0%
ATACTTCCATGACATTGCTT+GGG - tig0033459:3466-3485 Msa1451550:CDS 35.0%
! TCAAGTCTTGTCCAAAACAA+GGG + tig0033459:3620-3639 None:intergenic 35.0%
! AAGACTTGACTCTTTTCACA+TGG - tig0033459:3631-3650 Msa1451550:five_prime_UTR 35.0%
! AGACTTGACTCTTTTCACAT+GGG - tig0033459:3632-3651 Msa1451550:five_prime_UTR 35.0%
GAAAGAGATTAAGATGAACC+AGG + tig0033459:1843-1862 None:intergenic 35.0%
CATGATATGATATGATACCC+TGG + tig0033459:2020-2039 None:intergenic 35.0%
! CAGGGATTTTATTGTCATAG+AGG - tig0033459:2120-2139 Msa1451550:three_prime_UTR 35.0%
CTCAACAAATTGAAATGCCT+CGG + tig0033459:2397-2416 None:intergenic 35.0%
TATACTGGGATTGTTGTAAC+TGG - tig0033459:2443-2462 Msa1451550:CDS 35.0%
! TGTCAGTTTTCATGGTTGAA+TGG - tig0033459:2472-2491 Msa1451550:intron 35.0%
! AGTTTTCATGGTTGAATGGT+GGG - tig0033459:2476-2495 Msa1451550:intron 35.0%
!! GATATATTTTGTTGTCGCTG+CGG - tig0033459:2808-2827 Msa1451550:intron 35.0%
GTAAAAATAAGAGAGGATGG+TGG + tig0033459:2865-2884 None:intergenic 35.0%
! GAGAGAGATGCAATTTTAGA+AGG + tig0033459:2960-2979 None:intergenic 35.0%
! GAAAAGCCAAAAGTACAAAG+AGG - tig0033459:2998-3017 Msa1451550:intron 35.0%
! ACTTTCCCTCTTTGTACTTT+TGG + tig0033459:3007-3026 None:intergenic 35.0%
! AGGGAAAGTTTGTTCTTGAA+AGG - tig0033459:3018-3037 Msa1451550:intron 35.0%
TCCACTGAATTATGTGTTGA+GGG - tig0033459:3162-3181 Msa1451550:intron 35.0%
GAGTGATACTGAAGATGATT+AGG - tig0033459:3197-3216 Msa1451550:intron 35.0%
ATTCGTGTATCAAAAGGAGA+TGG - tig0033459:3394-3413 Msa1451550:intron 35.0%
AATACTTCCATGACATTGCT+TGG - tig0033459:3465-3484 Msa1451550:CDS 35.0%
ATACTTCCATGACATTGCTT+GGG - tig0033459:3466-3485 Msa1451550:CDS 35.0%
! TCAAGTCTTGTCCAAAACAA+GGG + tig0033459:3620-3639 None:intergenic 35.0%
! AAGACTTGACTCTTTTCACA+TGG - tig0033459:3631-3650 Msa1451550:five_prime_UTR 35.0%
! AGACTTGACTCTTTTCACAT+GGG - tig0033459:3632-3651 Msa1451550:five_prime_UTR 35.0%
AAGTGAAGAAGAAGAGTGAG+CGG - tig0033459:1890-1909 Msa1451550:intron 40.0%
AGCGGTGACATCAATCAAAT+GGG - tig0033459:1908-1927 Msa1451550:intron 40.0%
! GAGAATTTTTGCAGTTGAGC+TGG - tig0033459:1931-1950 Msa1451550:intron 40.0%
! ATTTTTGCAGTTGAGCTGGA+TGG - tig0033459:1935-1954 Msa1451550:intron 40.0%
! ATTCTGCTTCTGTGTTGATG+TGG - tig0033459:2328-2347 Msa1451550:intron 40.0%
CTAATACCAAACTAATGCCG+AGG - tig0033459:2377-2396 Msa1451550:intron 40.0%
! CAGTTTTCATGGTTGAATGG+TGG - tig0033459:2475-2494 Msa1451550:intron 40.0%
ACAAAACTCCCACATACGTA+AGG + tig0033459:2515-2534 None:intergenic 40.0%
!! TATGTGGGAGTTTTGTACAC+CGG - tig0033459:2519-2538 Msa1451550:intron 40.0%
! CATGTGCATGCTTGTGTTTT+TGG - tig0033459:2709-2728 Msa1451550:CDS 40.0%
CATGCTTGTCCATTTAACAG+AGG - tig0033459:3114-3133 Msa1451550:intron 40.0%
CTTGTCCATTTAACAGAGGA+AGG - tig0033459:3118-3137 Msa1451550:intron 40.0%
ACGATCCTTCCTCTGTTAAA+TGG + tig0033459:3126-3145 None:intergenic 40.0%
! GGAAGGATCGTTGATGAAAT+CGG - tig0033459:3135-3154 Msa1451550:intron 40.0%
CTCCACTGAATTATGTGTTG+AGG - tig0033459:3161-3180 Msa1451550:intron 40.0%
TTAGCCATCTATGAGGAAAC+TGG + tig0033459:3425-3444 None:intergenic 40.0%
AGTTTCCTCATAGATGGCTA+AGG - tig0033459:3424-3443 Msa1451550:intron 40.0%
CATATCCTTAGCCATCTATG+AGG + tig0033459:3432-3451 None:intergenic 40.0%
CTCATAGATGGCTAAGGATA+TGG - tig0033459:3430-3449 Msa1451550:intron 40.0%
! GTCAAGTCTTGTCCAAAACA+AGG + tig0033459:3621-3640 None:intergenic 40.0%
! GACTTGACTCTTTTCACATG+GGG - tig0033459:3633-3652 Msa1451550:five_prime_UTR 40.0%
GGGGACGAAGTTAGATAATA+TGG - tig0033459:3652-3671 Msa1451550:five_prime_UTR 40.0%
AAGTGAAGAAGAAGAGTGAG+CGG - tig0033459:1890-1909 Msa1451550:intron 40.0%
AGCGGTGACATCAATCAAAT+GGG - tig0033459:1908-1927 Msa1451550:intron 40.0%
! GAGAATTTTTGCAGTTGAGC+TGG - tig0033459:1931-1950 Msa1451550:intron 40.0%
! ATTTTTGCAGTTGAGCTGGA+TGG - tig0033459:1935-1954 Msa1451550:intron 40.0%
! ATTCTGCTTCTGTGTTGATG+TGG - tig0033459:2328-2347 Msa1451550:intron 40.0%
CTAATACCAAACTAATGCCG+AGG - tig0033459:2377-2396 Msa1451550:intron 40.0%
! CAGTTTTCATGGTTGAATGG+TGG - tig0033459:2475-2494 Msa1451550:intron 40.0%
ACAAAACTCCCACATACGTA+AGG + tig0033459:2515-2534 None:intergenic 40.0%
!! TATGTGGGAGTTTTGTACAC+CGG - tig0033459:2519-2538 Msa1451550:intron 40.0%
! CATGTGCATGCTTGTGTTTT+TGG - tig0033459:2709-2728 Msa1451550:CDS 40.0%
CATGCTTGTCCATTTAACAG+AGG - tig0033459:3114-3133 Msa1451550:intron 40.0%
CTTGTCCATTTAACAGAGGA+AGG - tig0033459:3118-3137 Msa1451550:intron 40.0%
ACGATCCTTCCTCTGTTAAA+TGG + tig0033459:3126-3145 None:intergenic 40.0%
! GGAAGGATCGTTGATGAAAT+CGG - tig0033459:3135-3154 Msa1451550:intron 40.0%
CTCCACTGAATTATGTGTTG+AGG - tig0033459:3161-3180 Msa1451550:intron 40.0%
TTAGCCATCTATGAGGAAAC+TGG + tig0033459:3425-3444 None:intergenic 40.0%
AGTTTCCTCATAGATGGCTA+AGG - tig0033459:3424-3443 Msa1451550:intron 40.0%
CATATCCTTAGCCATCTATG+AGG + tig0033459:3432-3451 None:intergenic 40.0%
CTCATAGATGGCTAAGGATA+TGG - tig0033459:3430-3449 Msa1451550:intron 40.0%
! GTCAAGTCTTGTCCAAAACA+AGG + tig0033459:3621-3640 None:intergenic 40.0%
! GACTTGACTCTTTTCACATG+GGG - tig0033459:3633-3652 Msa1451550:five_prime_UTR 40.0%
AATAGTAATACTCCCTGCCC+TGG - tig0033459:1822-1841 Msa1451550:three_prime_UTR 45.0%
GATTAAGATGAACCAGGGCA+GGG + tig0033459:1837-1856 None:intergenic 45.0%
AGATTAAGATGAACCAGGGC+AGG + tig0033459:1838-1857 None:intergenic 45.0%
GAGCGGTGACATCAATCAAA+TGG - tig0033459:1907-1926 Msa1451550:intron 45.0%
GCGGTGACATCAATCAAATG+GGG - tig0033459:1909-1928 Msa1451550:intron 45.0%
! AAGAGCAAGGTGAGTTTTGC+AGG + tig0033459:1981-2000 None:intergenic 45.0%
TGAGATCAGTGGAAAGAGCA+AGG + tig0033459:1994-2013 None:intergenic 45.0%
TTTCCACTGATCTCATCTCC+AGG - tig0033459:1999-2018 Msa1451550:intron 45.0%
TTCCACTGATCTCATCTCCA+GGG - tig0033459:2000-2019 Msa1451550:intron 45.0%
GAAATGCCTCGGCATTAGTT+TGG + tig0033459:2386-2405 None:intergenic 45.0%
!!! GGCTAGCTTGTCAGTTTTCA+TGG - tig0033459:2464-2483 Msa1451550:CDS 45.0%
CATACGTAAGGTCCTGGAAA+GGG + tig0033459:2503-2522 None:intergenic 45.0%
ACATACGTAAGGTCCTGGAA+AGG + tig0033459:2504-2523 None:intergenic 45.0%
TTTCCAGGACCTTACGTATG+TGG - tig0033459:2503-2522 Msa1451550:intron 45.0%
TTCCAGGACCTTACGTATGT+GGG - tig0033459:2504-2523 Msa1451550:intron 45.0%
GTGAAGTTCACACTGTGTCA+TGG + tig0033459:2736-2755 None:intergenic 45.0%
CACAGTGTGAACTTCACTAG+TGG - tig0033459:2739-2758 Msa1451550:intron 45.0%
GAACTTCACTAGTGGAGAAG+TGG - tig0033459:2747-2766 Msa1451550:intron 45.0%
TGGAAAGAGCGATGCTTTCA+GGG - tig0033459:2770-2789 Msa1451550:intron 45.0%
TCTCTCATAGGAAACTGTGC+AGG - tig0033459:2974-2993 Msa1451550:intron 45.0%
GCCCTCAACACATAATTCAG+TGG + tig0033459:3166-3185 None:intergenic 45.0%
GATTGCATCAATGGCACCAA+TGG + tig0033459:3494-3513 None:intergenic 45.0%
CACCCATCAACACACATCAA+CGG + tig0033459:3521-3540 None:intergenic 45.0%
! TTGATGTGTGTTGATGGGTG+TGG - tig0033459:3521-3540 Msa1451550:CDS 45.0%
! TGATGTGTGTTGATGGGTGT+GGG - tig0033459:3522-3541 Msa1451550:CDS 45.0%
ACACAACTATGGCACCAAAG+TGG - tig0033459:3592-3611 Msa1451550:five_prime_UTR 45.0%
CCAAAACAAGGGTTCCACTT+TGG + tig0033459:3609-3628 None:intergenic 45.0%
!! CCAAAGTGGAACCCTTGTTT+TGG - tig0033459:3606-3625 Msa1451550:five_prime_UTR 45.0%
AATAGTAATACTCCCTGCCC+TGG - tig0033459:1822-1841 Msa1451550:three_prime_UTR 45.0%
GATTAAGATGAACCAGGGCA+GGG + tig0033459:1837-1856 None:intergenic 45.0%
AGATTAAGATGAACCAGGGC+AGG + tig0033459:1838-1857 None:intergenic 45.0%
GAGCGGTGACATCAATCAAA+TGG - tig0033459:1907-1926 Msa1451550:intron 45.0%
GCGGTGACATCAATCAAATG+GGG - tig0033459:1909-1928 Msa1451550:intron 45.0%
! AAGAGCAAGGTGAGTTTTGC+AGG + tig0033459:1981-2000 None:intergenic 45.0%
TGAGATCAGTGGAAAGAGCA+AGG + tig0033459:1994-2013 None:intergenic 45.0%
TTTCCACTGATCTCATCTCC+AGG - tig0033459:1999-2018 Msa1451550:intron 45.0%
TTCCACTGATCTCATCTCCA+GGG - tig0033459:2000-2019 Msa1451550:intron 45.0%
GAAATGCCTCGGCATTAGTT+TGG + tig0033459:2386-2405 None:intergenic 45.0%
!!! GGCTAGCTTGTCAGTTTTCA+TGG - tig0033459:2464-2483 Msa1451550:CDS 45.0%
CATACGTAAGGTCCTGGAAA+GGG + tig0033459:2503-2522 None:intergenic 45.0%
ACATACGTAAGGTCCTGGAA+AGG + tig0033459:2504-2523 None:intergenic 45.0%
TTTCCAGGACCTTACGTATG+TGG - tig0033459:2503-2522 Msa1451550:intron 45.0%
TTCCAGGACCTTACGTATGT+GGG - tig0033459:2504-2523 Msa1451550:intron 45.0%
GTGAAGTTCACACTGTGTCA+TGG + tig0033459:2736-2755 None:intergenic 45.0%
CACAGTGTGAACTTCACTAG+TGG - tig0033459:2739-2758 Msa1451550:intron 45.0%
GAACTTCACTAGTGGAGAAG+TGG - tig0033459:2747-2766 Msa1451550:intron 45.0%
TGGAAAGAGCGATGCTTTCA+GGG - tig0033459:2770-2789 Msa1451550:intron 45.0%
TCTCTCATAGGAAACTGTGC+AGG - tig0033459:2974-2993 Msa1451550:intron 45.0%
GCCCTCAACACATAATTCAG+TGG + tig0033459:3166-3185 None:intergenic 45.0%
GATTGCATCAATGGCACCAA+TGG + tig0033459:3494-3513 None:intergenic 45.0%
CACCCATCAACACACATCAA+CGG + tig0033459:3521-3540 None:intergenic 45.0%
! TTGATGTGTGTTGATGGGTG+TGG - tig0033459:3521-3540 Msa1451550:CDS 45.0%
! TGATGTGTGTTGATGGGTGT+GGG - tig0033459:3522-3541 Msa1451550:CDS 45.0%
ACACAACTATGGCACCAAAG+TGG - tig0033459:3592-3611 Msa1451550:five_prime_UTR 45.0%
CCAAAACAAGGGTTCCACTT+TGG + tig0033459:3609-3628 None:intergenic 45.0%
!! CCAAAGTGGAACCCTTGTTT+TGG - tig0033459:3606-3625 Msa1451550:five_prime_UTR 45.0%
GAGCTGGATGGCAGAGTTTA+CGG - tig0033459:1947-1966 Msa1451550:intron 50.0%
TACCCTGGAGATGAGATCAG+TGG + tig0033459:2005-2024 None:intergenic 50.0%
!! TGGGAGTTTTGTACACCGGA+CGG - tig0033459:2523-2542 Msa1451550:intron 50.0%
CTTCACTAGTGGAGAAGTGG+TGG - tig0033459:2750-2769 Msa1451550:intron 50.0%
GTGGAAAGAGCGATGCTTTC+AGG - tig0033459:2769-2788 Msa1451550:intron 50.0%
TGTCGCTGCGGTCAGATAAT+TGG - tig0033459:2820-2839 Msa1451550:intron 50.0%
ACCGCCAGTTTCCTCATAGA+TGG - tig0033459:3418-3437 Msa1451550:intron 50.0%
GCCATCTATGAGGAAACTGG+CGG + tig0033459:3422-3441 None:intergenic 50.0%
ATGGCACCCAAGCAATGTCA+TGG + tig0033459:3475-3494 None:intergenic 50.0%
! TGACATTGCTTGGGTGCCAT+TGG - tig0033459:3475-3494 Msa1451550:CDS 50.0%
!! TGGTGCCATTGATGCAATCC+TGG - tig0033459:3495-3514 Msa1451550:CDS 50.0%
AACGGCCAGGATTGCATCAA+TGG + tig0033459:3503-3522 None:intergenic 50.0%
ATCAACACACATCAACGGCC+AGG + tig0033459:3516-3535 None:intergenic 50.0%
TGGCCGTTGATGTGTGTTGA+TGG - tig0033459:3515-3534 Msa1451550:CDS 50.0%
! GGCCGTTGATGTGTGTTGAT+GGG - tig0033459:3516-3535 Msa1451550:CDS 50.0%
! GATGTGTGTTGATGGGTGTG+GGG - tig0033459:3523-3542 Msa1451550:CDS 50.0%
GTGTGTGTGATGTGTGTGTG+TGG - tig0033459:3548-3567 Msa1451550:five_prime_UTR 50.0%
GTGGAGATGGCACACAACTA+TGG - tig0033459:3581-3600 Msa1451550:five_prime_UTR 50.0%
GAGCTGGATGGCAGAGTTTA+CGG - tig0033459:1947-1966 Msa1451550:intron 50.0%
TACCCTGGAGATGAGATCAG+TGG + tig0033459:2005-2024 None:intergenic 50.0%
!! TGGGAGTTTTGTACACCGGA+CGG - tig0033459:2523-2542 Msa1451550:intron 50.0%
CTTCACTAGTGGAGAAGTGG+TGG - tig0033459:2750-2769 Msa1451550:intron 50.0%
GTGGAAAGAGCGATGCTTTC+AGG - tig0033459:2769-2788 Msa1451550:intron 50.0%
TGTCGCTGCGGTCAGATAAT+TGG - tig0033459:2820-2839 Msa1451550:intron 50.0%
ACCGCCAGTTTCCTCATAGA+TGG - tig0033459:3418-3437 Msa1451550:intron 50.0%
GCCATCTATGAGGAAACTGG+CGG + tig0033459:3422-3441 None:intergenic 50.0%
ATGGCACCCAAGCAATGTCA+TGG + tig0033459:3475-3494 None:intergenic 50.0%
! TGACATTGCTTGGGTGCCAT+TGG - tig0033459:3475-3494 Msa1451550:CDS 50.0%
!! TGGTGCCATTGATGCAATCC+TGG - tig0033459:3495-3514 Msa1451550:CDS 50.0%
AACGGCCAGGATTGCATCAA+TGG + tig0033459:3503-3522 None:intergenic 50.0%
ATCAACACACATCAACGGCC+AGG + tig0033459:3516-3535 None:intergenic 50.0%
TGGCCGTTGATGTGTGTTGA+TGG - tig0033459:3515-3534 Msa1451550:CDS 50.0%
! GGCCGTTGATGTGTGTTGAT+GGG - tig0033459:3516-3535 Msa1451550:CDS 50.0%
! GATGTGTGTTGATGGGTGTG+GGG - tig0033459:3523-3542 Msa1451550:CDS 50.0%
GTGTGTGTGATGTGTGTGTG+TGG - tig0033459:3548-3567 Msa1451550:five_prime_UTR 50.0%
GTGGAGATGGCACACAACTA+TGG - tig0033459:3581-3600 Msa1451550:five_prime_UTR 50.0%
! TGAATGGTGGGACCCTTTCC+AGG - tig0033459:2488-2507 Msa1451550:intron 55.0%
CTCCCACATACGTAAGGTCC+TGG + tig0033459:2509-2528 None:intergenic 55.0%
!! GGGAGTTTTGTACACCGGAC+GGG - tig0033459:2524-2543 Msa1451550:intron 55.0%
GCTGCGGTCAGATAATTGGC+TGG - tig0033459:2824-2843 Msa1451550:intron 55.0%
GTGTGTGTGTGGTGTGTGTG+TGG - tig0033459:3559-3578 Msa1451550:five_prime_UTR 55.0%
TGTGTGTGGTGTGTGTGTGG+TGG - tig0033459:3562-3581 Msa1451550:five_prime_UTR 55.0%
! TGGTGTGTGTGTGGTGGAGA+TGG - tig0033459:3568-3587 Msa1451550:five_prime_UTR 55.0%
! TGAATGGTGGGACCCTTTCC+AGG - tig0033459:2488-2507 Msa1451550:intron 55.0%
CTCCCACATACGTAAGGTCC+TGG + tig0033459:2509-2528 None:intergenic 55.0%
!! GGGAGTTTTGTACACCGGAC+GGG - tig0033459:2524-2543 Msa1451550:intron 55.0%
GCTGCGGTCAGATAATTGGC+TGG - tig0033459:2824-2843 Msa1451550:intron 55.0%
GTGTGTGTGTGGTGTGTGTG+TGG - tig0033459:3559-3578 Msa1451550:five_prime_UTR 55.0%
TGTGTGTGGTGTGTGTGTGG+TGG - tig0033459:3562-3581 Msa1451550:five_prime_UTR 55.0%
! TGGTGTGTGTGTGGTGGAGA+TGG - tig0033459:3568-3587 Msa1451550:five_prime_UTR 55.0%
ACATTCAGGGCAGTCCCGTC+CGG + tig0033459:2541-2560 None:intergenic 60.0%
ACATTCAGGGCAGTCCCGTC+CGG + tig0033459:2541-2560 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0033459 gene 1798 3674 1798 ID=Msa1451550;Name=Msa1451550
tig0033459 mRNA 1798 3674 1798 ID=Msa1451550-mRNA-1;Parent=Msa1451550;Name=Msa1451550-mRNA-1;_AED=0.17;_eAED=0.17;_QI=128|1|1|1|0.8|0.66|6|294|129
tig0033459 exon 1798 1849 1798 ID=Msa1451550-mRNA-1:exon:18111;Parent=Msa1451550-mRNA-1
tig0033459 exon 2012 2338 2012 ID=Msa1451550-mRNA-1:exon:18110;Parent=Msa1451550-mRNA-1
tig0033459 exon 2433 2488 2433 ID=Msa1451550-mRNA-1:exon:18109;Parent=Msa1451550-mRNA-1
tig0033459 exon 2620 2728 2620 ID=Msa1451550-mRNA-1:exon:18108;Parent=Msa1451550-mRNA-1
tig0033459 exon 3306 3349 3306 ID=Msa1451550-mRNA-1:exon:18107;Parent=Msa1451550-mRNA-1
tig0033459 exon 3451 3674 3451 ID=Msa1451550-mRNA-1:exon:18106;Parent=Msa1451550-mRNA-1
tig0033459 five_prime_UTR 3547 3674 3547 ID=Msa1451550-mRNA-1:five_prime_utr;Parent=Msa1451550-mRNA-1
tig0033459 CDS 3451 3546 3451 ID=Msa1451550-mRNA-1:cds;Parent=Msa1451550-mRNA-1
tig0033459 CDS 3306 3349 3306 ID=Msa1451550-mRNA-1:cds;Parent=Msa1451550-mRNA-1
tig0033459 CDS 2620 2728 2620 ID=Msa1451550-mRNA-1:cds;Parent=Msa1451550-mRNA-1
tig0033459 CDS 2433 2488 2433 ID=Msa1451550-mRNA-1:cds;Parent=Msa1451550-mRNA-1
tig0033459 CDS 2254 2338 2254 ID=Msa1451550-mRNA-1:cds;Parent=Msa1451550-mRNA-1
tig0033459 three_prime_UTR 2012 2253 2012 ID=Msa1451550-mRNA-1:three_prime_utr;Parent=Msa1451550-mRNA-1
tig0033459 three_prime_UTR 1798 1849 1798 ID=Msa1451550-mRNA-1:three_prime_utr;Parent=Msa1451550-mRNA-1
Gene Sequence

>Msa1451550

ATGGGGAGAATTTTTGCAGTTGAGCTGGATGGCAGAGTTTACGGCTGCAAGTCCTGCAAAACTCACCTTGCTCTTTCCACTGATCTCATCTCCAGGGGATTTTATTGTCATAGAGGAAAAGCATACCTTTTCAATAATGTTGTGAACTTCACTAGTGGAGAAGTGGTGGAAAGAGCGATGCTTTCAGGGATGCATACTGTTGCAGATATATTTTGTTGTCGCTGCGGTCAGATAATTGGCTGGAAATACGAAACTGTGCAGGAGAAAAGCCAAAAGTACAAAGAGGGAAAGTTTGTTCTTGAAAGAGGAAGGATCGTTGATGAAATCGGTTTCTCCACTGAATTATGTGTTGAGGGCTGTGTCAGCATGAGTGATACTGAAGATGATTAG

Protein sequence

>Msa1451550

MGRIFAVELDGRVYGCKSCKTHLALSTDLISRGFYCHRGKAYLFNNVVNFTSGEVVERAMLSGMHTVADIFCCRCGQIIGWKYETVQEKSQKYKEGKFVLERGRIVDEIGFSTELCVEGCVSMSDTEDD*