AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0798100

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798100 MtrunA17_Chr2g0323051 65.000 80 26 2 45 124 227 304 3.58e-26 102
Msa0798100 MtrunA17_Chr3g0140681 93.333 45 3 0 1 45 209 253 6.07e-23 92.4
Msa0798100 MtrunA17_Chr4g0023601 56.164 73 29 1 29 98 135 207 1.54e-20 86.3
Msa0798100 MtrunA17_Chr5g0400001 51.786 56 25 2 45 99 228 282 2.01e-11 60.1
Msa0798100 MtrunA17_Chr5g0399991 52.727 55 24 2 45 98 230 283 2.35e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798100 AT2G32290.1 72.222 54 15 0 45 98 219 272 2.53e-20 86.3
Msa0798100 AT4G15210.2 62.963 54 20 0 45 98 156 209 3.98e-19 82.4
Msa0798100 AT4G15210.1 62.963 54 20 0 45 98 156 209 5.66e-19 82.0
Msa0798100 AT4G15210.3 62.963 54 20 0 45 98 103 156 5.90e-19 82.0
Msa0798100 AT4G15210.4 62.963 54 20 0 45 98 103 156 5.90e-19 82.0
Msa0798100 AT4G00490.1 49.091 55 28 0 45 99 236 290 1.39e-11 61.2

Find 54 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATGTTTATAGATTAATT+AGG 0.166605 5_3:+10672142 Msa0798100:three_prime_UTR
TATGATAATTTAATCAAAAT+TGG 0.267934 5_3:+10672213 Msa0798100:three_prime_UTR
GACTGGGTATTTCTTGGTAT+TGG 0.274714 5_3:+10671515 Msa0798100:CDS
ATATGTTTATAGATTAATTA+GGG 0.278241 5_3:+10672143 Msa0798100:three_prime_UTR
CTTCAAATAGTCAGCCATTC+TGG 0.282618 5_3:-10671992 None:intergenic
TCTCGTCTTTCGCGGTTTCT+TGG 0.301514 5_3:+10670857 Msa0798100:CDS
AAGCTTAATAGCAGCCTTAC+TGG 0.305599 5_3:+10672170 Msa0798100:three_prime_UTR
GAAGAGTTATAGAGAGAATA+TGG 0.309022 5_3:+10671400 Msa0798100:CDS
GTTATGTGGATTTCACTCTT+TGG 0.332758 5_3:+10670823 Msa0798100:CDS
TCGCGGTTTCTTGGTAAAAC+AGG 0.335407 5_3:+10670866 Msa0798100:CDS
TGCCTAGACTGGGTATTTCT+TGG 0.342837 5_3:+10671509 Msa0798100:CDS
AATCCTGGACTCACCGCTTA+TGG 0.358745 5_3:-10671881 None:intergenic
CCGCTTATGGTGACATCATA+AGG 0.359764 5_3:-10671868 None:intergenic
TCCCTCTCATGCATGATATC+TGG 0.374941 5_3:-10671911 None:intergenic
CTTTAGGTTCCTTTGTTATG+TGG 0.393628 5_3:+10670809 None:intergenic
ATAAGGGCTGGTGCACCTAC+TGG 0.427494 5_3:-10671851 None:intergenic
ATAGTCAGCCATTCTGGCTC+TGG 0.443426 5_3:-10671986 None:intergenic
TATCTATATATATATGTTCA+AGG 0.444263 5_3:-10672076 None:intergenic
ATATCTGGCCTCACTAATCC+TGG 0.482839 5_3:-10671896 None:intergenic
AAACAACATCTCGTCTTTCG+CGG 0.486945 5_3:+10670849 Msa0798100:CDS
GAGGTAGGACTTGGCCCTGC+TGG 0.486945 5_3:+10671458 Msa0798100:CDS
CTTATAAGCGTGTACGTGGC+AGG 0.500665 5_3:+10671710 Msa0798100:CDS
TCACCATAAGCGGTGAGTCC+AGG 0.505916 5_3:+10671878 Msa0798100:three_prime_UTR
CGCTTATGGTGACATCATAA+GGG 0.505983 5_3:-10671867 None:intergenic
CGCGGTTTCTTGGTAAAACA+GGG 0.510516 5_3:+10670867 Msa0798100:CDS
ACCTCCTCTTCTTCTCCAGA+TGG 0.522445 5_3:+10670925 Msa0798100:CDS
AAAGCTTAATGTAAGAATCT+CGG 0.527749 5_3:-10671656 None:intergenic
TTGTCGAATATGAACCAGTA+AGG 0.528909 5_3:-10672184 None:intergenic
TTGAGATTCCAGAGCCAGAA+TGG 0.530384 5_3:+10671978 Msa0798100:three_prime_UTR
AGATATCTAAGTTCTCCAGC+AGG 0.532605 5_3:-10671473 None:intergenic
AAATTGGAAATGCAGGGGAC+AGG 0.536511 5_3:+10671825 Msa0798100:intron
TATGGTGACATCATAAGGGC+TGG 0.556208 5_3:-10671863 None:intergenic
AATGGCTGACTATTTGAAGC+AGG 0.562267 5_3:+10671996 Msa0798100:three_prime_UTR
CGAACCATCTGGAGAAGAAG+AGG 0.566975 5_3:-10670929 None:intergenic
ATGTTTATAGATTAATTAGG+GGG 0.570090 5_3:+10672145 Msa0798100:three_prime_UTR
GCTTTACTCATGATGCTGAA+AGG 0.577029 5_3:+10671674 Msa0798100:CDS
CCTTATGATGTCACCATAAG+CGG 0.579231 5_3:+10671868 Msa0798100:three_prime_UTR
TACCAAGAAATACCCAGTCT+AGG 0.594121 5_3:-10671511 None:intergenic
GCCAGATATCATGCATGAGA+GGG 0.594778 5_3:+10671910 Msa0798100:three_prime_UTR
GGCCAGATATCATGCATGAG+AGG 0.594930 5_3:+10671909 Msa0798100:three_prime_UTR
ATAGACATTGAGGTAGGACT+TGG 0.597655 5_3:+10671449 Msa0798100:CDS
TGAGCTACTGATAGACATTG+AGG 0.599509 5_3:+10671439 Msa0798100:CDS
CAGTCTTATAAGCGTGTACG+TGG 0.609552 5_3:+10671706 Msa0798100:CDS
CAGAGATCCTTAAAAGCTCG+AGG 0.621293 5_3:+10671954 Msa0798100:three_prime_UTR
TATTTGAAGCAGGATGGCAA+AGG 0.629381 5_3:+10672006 Msa0798100:three_prime_UTR
GATATCTAAGTTCTCCAGCA+GGG 0.632849 5_3:-10671472 None:intergenic
CTACTGATAGACATTGAGGT+AGG 0.639731 5_3:+10671443 Msa0798100:CDS
GCTGACTATTTGAAGCAGGA+TGG 0.643683 5_3:+10672000 Msa0798100:three_prime_UTR
ACCATCTGGAGAAGAAGAGG+AGG 0.646740 5_3:-10670926 None:intergenic
TATGTTTATAGATTAATTAG+GGG 0.649576 5_3:+10672144 Msa0798100:three_prime_UTR
CGGTGAGTCCAGGATTAGTG+AGG 0.671978 5_3:+10671888 Msa0798100:three_prime_UTR
GCAGGGGACAGGCTTCCAGT+AGG 0.671994 5_3:+10671836 Msa0798100:intron
GAGTGAAATCCACATAACAA+AGG 0.672556 5_3:-10670818 None:intergenic
TGTACGTGGCAGGTTGACCG+AGG 0.702164 5_3:+10671720 Msa0798100:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATGTTTATAGATTAATT+AGG + chr5_3:10672142-10672161 Msa0798100:three_prime_UTR 10.0%
!! ATATGTTTATAGATTAATTA+GGG + chr5_3:10672143-10672162 Msa0798100:three_prime_UTR 10.0%
!! TATGATAATTTAATCAAAAT+TGG + chr5_3:10672213-10672232 Msa0798100:three_prime_UTR 10.0%
!! ATGATAATTTAATCAAAATT+GGG + chr5_3:10672214-10672233 Msa0798100:three_prime_UTR 10.0%
!! TATATGTTTATAGATTAATT+AGG + chr5_3:10672142-10672161 Msa0798100:three_prime_UTR 10.0%
!! ATATGTTTATAGATTAATTA+GGG + chr5_3:10672143-10672162 Msa0798100:three_prime_UTR 10.0%
!! TTACATGAATTTAATATCTT+TGG - chr5_3:10670960-10670979 None:intergenic 15.0%
!! AAAGATATTAAATTCATGTA+AGG + chr5_3:10670959-10670978 Msa0798100:intron 15.0%
!! AAAGAAGTAATAATAAAAAG+TGG - chr5_3:10671275-10671294 None:intergenic 15.0%
!!! CATAACAAATTTTAGTAAAA+TGG - chr5_3:10671776-10671795 None:intergenic 15.0%
!! TGGAATATTTATATGAAAAT+TGG + chr5_3:10671809-10671828 Msa0798100:intron 15.0%
!! TATCTATATATATATGTTCA+AGG - chr5_3:10672079-10672098 None:intergenic 15.0%
!! TATGTTTATAGATTAATTAG+GGG + chr5_3:10672144-10672163 Msa0798100:three_prime_UTR 15.0%
!! TTACATGAATTTAATATCTT+TGG - chr5_3:10670960-10670979 None:intergenic 15.0%
!! AAAGATATTAAATTCATGTA+AGG + chr5_3:10670959-10670978 Msa0798100:intron 15.0%
!! AAAGAAGTAATAATAAAAAG+TGG - chr5_3:10671275-10671294 None:intergenic 15.0%
!!! CATAACAAATTTTAGTAAAA+TGG - chr5_3:10671776-10671795 None:intergenic 15.0%
!! TGGAATATTTATATGAAAAT+TGG + chr5_3:10671809-10671828 Msa0798100:intron 15.0%
!! TATCTATATATATATGTTCA+AGG - chr5_3:10672079-10672098 None:intergenic 15.0%
!! TATGTTTATAGATTAATTAG+GGG + chr5_3:10672144-10672163 Msa0798100:three_prime_UTR 15.0%
!!! AAGCATTTATTTTTATCTGA+TGG + chr5_3:10670890-10670909 Msa0798100:CDS 20.0%
!! TATTATATCTCTTTCTCTAT+AGG + chr5_3:10671059-10671078 Msa0798100:intron 20.0%
!! TGAACTAAAACAAAAGAATA+CGG - chr5_3:10671138-10671157 None:intergenic 20.0%
!! TGTTATGTAATGTTTAATGT+TGG + chr5_3:10671789-10671808 Msa0798100:intron 20.0%
!! ATGTTTATAGATTAATTAGG+GGG + chr5_3:10672145-10672164 Msa0798100:three_prime_UTR 20.0%
!!! AAGCATTTATTTTTATCTGA+TGG + chr5_3:10670890-10670909 Msa0798100:CDS 20.0%
!! TATTATATCTCTTTCTCTAT+AGG + chr5_3:10671059-10671078 Msa0798100:intron 20.0%
!! TGAACTAAAACAAAAGAATA+CGG - chr5_3:10671138-10671157 None:intergenic 20.0%
!! TGTTATGTAATGTTTAATGT+TGG + chr5_3:10671789-10671808 Msa0798100:intron 20.0%
!! ATGTTTATAGATTAATTAGG+GGG + chr5_3:10672145-10672164 Msa0798100:three_prime_UTR 20.0%
!! TATGTTGTTTGTTCATGATT+TGG - chr5_3:10671034-10671053 None:intergenic 25.0%
! GATAGTAATAGAATATGCAA+AGG - chr5_3:10671171-10671190 None:intergenic 25.0%
!!! TTCAAGTTTTGCTTATGTTT+AGG - chr5_3:10671239-10671258 None:intergenic 25.0%
! AAAGCTTAATGTAAGAATCT+CGG - chr5_3:10671659-10671678 None:intergenic 25.0%
! TATATGAAAATTGGAAATGC+AGG + chr5_3:10671818-10671837 Msa0798100:intron 25.0%
! ATATGAAAATTGGAAATGCA+GGG + chr5_3:10671819-10671838 Msa0798100:intron 25.0%
!! TATGTTGTTTGTTCATGATT+TGG - chr5_3:10671034-10671053 None:intergenic 25.0%
! GATAGTAATAGAATATGCAA+AGG - chr5_3:10671171-10671190 None:intergenic 25.0%
!!! TTCAAGTTTTGCTTATGTTT+AGG - chr5_3:10671239-10671258 None:intergenic 25.0%
! AAAGCTTAATGTAAGAATCT+CGG - chr5_3:10671659-10671678 None:intergenic 25.0%
! TATATGAAAATTGGAAATGC+AGG + chr5_3:10671818-10671837 Msa0798100:intron 25.0%
! ATATGAAAATTGGAAATGCA+GGG + chr5_3:10671819-10671838 Msa0798100:intron 25.0%
! GATTTGGTTTCTAAACCATA+AGG - chr5_3:10671018-10671037 None:intergenic 30.0%
TCATTTAAACTTACAGACAG+TGG - chr5_3:10671205-10671224 None:intergenic 30.0%
GAAGAGTTATAGAGAGAATA+TGG + chr5_3:10671400-10671419 Msa0798100:CDS 30.0%
TGAACATATATGTATACACG+TGG - chr5_3:10671593-10671612 None:intergenic 30.0%
CGTGTATACATATATGTTCA+TGG + chr5_3:10671593-10671612 Msa0798100:intron 30.0%
TATGAAAATTGGAAATGCAG+GGG + chr5_3:10671820-10671839 Msa0798100:intron 30.0%
!! CTCTGAGGAAATTTTGTATT+TGG - chr5_3:10671939-10671958 None:intergenic 30.0%
TGAAGAAACTGATGAAAAAG+AGG + chr5_3:10672044-10672063 Msa0798100:three_prime_UTR 30.0%
GAAGAAACTGATGAAAAAGA+GGG + chr5_3:10672045-10672064 Msa0798100:three_prime_UTR 30.0%
! GATTTGGTTTCTAAACCATA+AGG - chr5_3:10671018-10671037 None:intergenic 30.0%
TCATTTAAACTTACAGACAG+TGG - chr5_3:10671205-10671224 None:intergenic 30.0%
GAAGAGTTATAGAGAGAATA+TGG + chr5_3:10671400-10671419 Msa0798100:CDS 30.0%
TGAACATATATGTATACACG+TGG - chr5_3:10671593-10671612 None:intergenic 30.0%
CGTGTATACATATATGTTCA+TGG + chr5_3:10671593-10671612 Msa0798100:intron 30.0%
TATGAAAATTGGAAATGCAG+GGG + chr5_3:10671820-10671839 Msa0798100:intron 30.0%
!! CTCTGAGGAAATTTTGTATT+TGG - chr5_3:10671939-10671958 None:intergenic 30.0%
TGAAGAAACTGATGAAAAAG+AGG + chr5_3:10672044-10672063 Msa0798100:three_prime_UTR 30.0%
GAAGAAACTGATGAAAAAGA+GGG + chr5_3:10672045-10672064 Msa0798100:three_prime_UTR 30.0%
GAGTGAAATCCACATAACAA+AGG - chr5_3:10670821-10670840 None:intergenic 35.0%
GTTATGTGGATTTCACTCTT+TGG + chr5_3:10670823-10670842 Msa0798100:CDS 35.0%
! TGATTTTCGCAACTTCCTTA+TGG + chr5_3:10671000-10671019 Msa0798100:intron 35.0%
TTCTCTATAGGTCTGCTTTA+CGG + chr5_3:10671071-10671090 Msa0798100:intron 35.0%
GTCGTAACGAATATTTGCAT+AGG - chr5_3:10671116-10671135 None:intergenic 35.0%
TTTCCCTTAGTTCCCTTAAT+TGG + chr5_3:10671348-10671367 Msa0798100:intron 35.0%
ACACCAATTAAGGGAACTAA+GGG - chr5_3:10671354-10671373 None:intergenic 35.0%
AACACCAATTAAGGGAACTA+AGG - chr5_3:10671355-10671374 None:intergenic 35.0%
CTGCATCAAACACCAATTAA+GGG - chr5_3:10671363-10671382 None:intergenic 35.0%
TCTGCATCAAACACCAATTA+AGG - chr5_3:10671364-10671383 None:intergenic 35.0%
!! TTTTTCAGAATGCCTAGACT+GGG + chr5_3:10671499-10671518 Msa0798100:CDS 35.0%
TGTATCCTGCATATTGTTTC+AGG + chr5_3:10671621-10671640 Msa0798100:intron 35.0%
GTATCCTGCATATTGTTTCA+GGG + chr5_3:10671622-10671641 Msa0798100:intron 35.0%
GAAATTGTTCCATCATACCT+CGG - chr5_3:10671740-10671759 None:intergenic 35.0%
TTGTCGAATATGAACCAGTA+AGG - chr5_3:10672187-10672206 None:intergenic 35.0%
GAGTGAAATCCACATAACAA+AGG - chr5_3:10670821-10670840 None:intergenic 35.0%
GTTATGTGGATTTCACTCTT+TGG + chr5_3:10670823-10670842 Msa0798100:CDS 35.0%
! TGATTTTCGCAACTTCCTTA+TGG + chr5_3:10671000-10671019 Msa0798100:intron 35.0%
TTCTCTATAGGTCTGCTTTA+CGG + chr5_3:10671071-10671090 Msa0798100:intron 35.0%
GTCGTAACGAATATTTGCAT+AGG - chr5_3:10671116-10671135 None:intergenic 35.0%
TTTCCCTTAGTTCCCTTAAT+TGG + chr5_3:10671348-10671367 Msa0798100:intron 35.0%
ACACCAATTAAGGGAACTAA+GGG - chr5_3:10671354-10671373 None:intergenic 35.0%
AACACCAATTAAGGGAACTA+AGG - chr5_3:10671355-10671374 None:intergenic 35.0%
CTGCATCAAACACCAATTAA+GGG - chr5_3:10671363-10671382 None:intergenic 35.0%
TCTGCATCAAACACCAATTA+AGG - chr5_3:10671364-10671383 None:intergenic 35.0%
!! TTTTTCAGAATGCCTAGACT+GGG + chr5_3:10671499-10671518 Msa0798100:CDS 35.0%
TGTATCCTGCATATTGTTTC+AGG + chr5_3:10671621-10671640 Msa0798100:intron 35.0%
GTATCCTGCATATTGTTTCA+GGG + chr5_3:10671622-10671641 Msa0798100:intron 35.0%
GAAATTGTTCCATCATACCT+CGG - chr5_3:10671740-10671759 None:intergenic 35.0%
TTGTCGAATATGAACCAGTA+AGG - chr5_3:10672187-10672206 None:intergenic 35.0%
AAACAACATCTCGTCTTTCG+CGG + chr5_3:10670849-10670868 Msa0798100:CDS 40.0%
GAATATTTGCATAGGCAACG+CGG - chr5_3:10671108-10671127 None:intergenic 40.0%
TGAGCTACTGATAGACATTG+AGG + chr5_3:10671439-10671458 Msa0798100:CDS 40.0%
CTACTGATAGACATTGAGGT+AGG + chr5_3:10671443-10671462 Msa0798100:CDS 40.0%
ATAGACATTGAGGTAGGACT+TGG + chr5_3:10671449-10671468 Msa0798100:CDS 40.0%
GATATCTAAGTTCTCCAGCA+GGG - chr5_3:10671475-10671494 None:intergenic 40.0%
AGATATCTAAGTTCTCCAGC+AGG - chr5_3:10671476-10671495 None:intergenic 40.0%
!!! CTTTTTCAGAATGCCTAGAC+TGG + chr5_3:10671498-10671517 Msa0798100:CDS 40.0%
TACCAAGAAATACCCAGTCT+AGG - chr5_3:10671514-10671533 None:intergenic 40.0%
GACTGGGTATTTCTTGGTAT+TGG + chr5_3:10671515-10671534 Msa0798100:CDS 40.0%
GCTTTACTCATGATGCTGAA+AGG + chr5_3:10671674-10671693 Msa0798100:CDS 40.0%
CGCTTATGGTGACATCATAA+GGG - chr5_3:10671870-10671889 None:intergenic 40.0%
CCTTATGATGTCACCATAAG+CGG + chr5_3:10671868-10671887 Msa0798100:three_prime_UTR 40.0%
! TCTCAATCCTCGAGCTTTTA+AGG - chr5_3:10671964-10671983 None:intergenic 40.0%
CTTCAAATAGTCAGCCATTC+TGG - chr5_3:10671995-10672014 None:intergenic 40.0%
! AATGGCTGACTATTTGAAGC+AGG + chr5_3:10671996-10672015 Msa0798100:three_prime_UTR 40.0%
! TATTTGAAGCAGGATGGCAA+AGG + chr5_3:10672006-10672025 Msa0798100:three_prime_UTR 40.0%
AAGCTTAATAGCAGCCTTAC+TGG + chr5_3:10672170-10672189 Msa0798100:three_prime_UTR 40.0%
AAACAACATCTCGTCTTTCG+CGG + chr5_3:10670849-10670868 Msa0798100:CDS 40.0%
GAATATTTGCATAGGCAACG+CGG - chr5_3:10671108-10671127 None:intergenic 40.0%
TGAGCTACTGATAGACATTG+AGG + chr5_3:10671439-10671458 Msa0798100:CDS 40.0%
CTACTGATAGACATTGAGGT+AGG + chr5_3:10671443-10671462 Msa0798100:CDS 40.0%
ATAGACATTGAGGTAGGACT+TGG + chr5_3:10671449-10671468 Msa0798100:CDS 40.0%
GATATCTAAGTTCTCCAGCA+GGG - chr5_3:10671475-10671494 None:intergenic 40.0%
AGATATCTAAGTTCTCCAGC+AGG - chr5_3:10671476-10671495 None:intergenic 40.0%
!!! CTTTTTCAGAATGCCTAGAC+TGG + chr5_3:10671498-10671517 Msa0798100:CDS 40.0%
TACCAAGAAATACCCAGTCT+AGG - chr5_3:10671514-10671533 None:intergenic 40.0%
GACTGGGTATTTCTTGGTAT+TGG + chr5_3:10671515-10671534 Msa0798100:CDS 40.0%
GCTTTACTCATGATGCTGAA+AGG + chr5_3:10671674-10671693 Msa0798100:CDS 40.0%
CGCTTATGGTGACATCATAA+GGG - chr5_3:10671870-10671889 None:intergenic 40.0%
CCTTATGATGTCACCATAAG+CGG + chr5_3:10671868-10671887 Msa0798100:three_prime_UTR 40.0%
! TCTCAATCCTCGAGCTTTTA+AGG - chr5_3:10671964-10671983 None:intergenic 40.0%
CTTCAAATAGTCAGCCATTC+TGG - chr5_3:10671995-10672014 None:intergenic 40.0%
! AATGGCTGACTATTTGAAGC+AGG + chr5_3:10671996-10672015 Msa0798100:three_prime_UTR 40.0%
! TATTTGAAGCAGGATGGCAA+AGG + chr5_3:10672006-10672025 Msa0798100:three_prime_UTR 40.0%
AAGCTTAATAGCAGCCTTAC+TGG + chr5_3:10672170-10672189 Msa0798100:three_prime_UTR 40.0%
TCGCGGTTTCTTGGTAAAAC+AGG + chr5_3:10670866-10670885 Msa0798100:CDS 45.0%
CGCGGTTTCTTGGTAAAACA+GGG + chr5_3:10670867-10670886 Msa0798100:CDS 45.0%
TGCCTAGACTGGGTATTTCT+TGG + chr5_3:10671509-10671528 Msa0798100:CDS 45.0%
AGCACCCTGAAACAATATGC+AGG - chr5_3:10671629-10671648 None:intergenic 45.0%
! CAGTCTTATAAGCGTGTACG+TGG + chr5_3:10671706-10671725 Msa0798100:CDS 45.0%
AAATTGGAAATGCAGGGGAC+AGG + chr5_3:10671825-10671844 Msa0798100:intron 45.0%
TATGGTGACATCATAAGGGC+TGG - chr5_3:10671866-10671885 None:intergenic 45.0%
CCGCTTATGGTGACATCATA+AGG - chr5_3:10671871-10671890 None:intergenic 45.0%
ATATCTGGCCTCACTAATCC+TGG - chr5_3:10671899-10671918 None:intergenic 45.0%
GCCAGATATCATGCATGAGA+GGG + chr5_3:10671910-10671929 Msa0798100:three_prime_UTR 45.0%
TCCCTCTCATGCATGATATC+TGG - chr5_3:10671914-10671933 None:intergenic 45.0%
!! CGAGCTTTTAAGGATCTCTG+AGG - chr5_3:10671954-10671973 None:intergenic 45.0%
CAGAGATCCTTAAAAGCTCG+AGG + chr5_3:10671954-10671973 Msa0798100:three_prime_UTR 45.0%
TTGAGATTCCAGAGCCAGAA+TGG + chr5_3:10671978-10671997 Msa0798100:three_prime_UTR 45.0%
! GCTGACTATTTGAAGCAGGA+TGG + chr5_3:10672000-10672019 Msa0798100:three_prime_UTR 45.0%
TCGCGGTTTCTTGGTAAAAC+AGG + chr5_3:10670866-10670885 Msa0798100:CDS 45.0%
CGCGGTTTCTTGGTAAAACA+GGG + chr5_3:10670867-10670886 Msa0798100:CDS 45.0%
TGCCTAGACTGGGTATTTCT+TGG + chr5_3:10671509-10671528 Msa0798100:CDS 45.0%
AGCACCCTGAAACAATATGC+AGG - chr5_3:10671629-10671648 None:intergenic 45.0%
! CAGTCTTATAAGCGTGTACG+TGG + chr5_3:10671706-10671725 Msa0798100:CDS 45.0%
AAATTGGAAATGCAGGGGAC+AGG + chr5_3:10671825-10671844 Msa0798100:intron 45.0%
TATGGTGACATCATAAGGGC+TGG - chr5_3:10671866-10671885 None:intergenic 45.0%
CCGCTTATGGTGACATCATA+AGG - chr5_3:10671871-10671890 None:intergenic 45.0%
ATATCTGGCCTCACTAATCC+TGG - chr5_3:10671899-10671918 None:intergenic 45.0%
GCCAGATATCATGCATGAGA+GGG + chr5_3:10671910-10671929 Msa0798100:three_prime_UTR 45.0%
TCCCTCTCATGCATGATATC+TGG - chr5_3:10671914-10671933 None:intergenic 45.0%
!! CGAGCTTTTAAGGATCTCTG+AGG - chr5_3:10671954-10671973 None:intergenic 45.0%
CAGAGATCCTTAAAAGCTCG+AGG + chr5_3:10671954-10671973 Msa0798100:three_prime_UTR 45.0%
TTGAGATTCCAGAGCCAGAA+TGG + chr5_3:10671978-10671997 Msa0798100:three_prime_UTR 45.0%
! GCTGACTATTTGAAGCAGGA+TGG + chr5_3:10672000-10672019 Msa0798100:three_prime_UTR 45.0%
TCTCGTCTTTCGCGGTTTCT+TGG + chr5_3:10670857-10670876 Msa0798100:CDS 50.0%
ACCTCCTCTTCTTCTCCAGA+TGG + chr5_3:10670925-10670944 Msa0798100:CDS 50.0%
ACCATCTGGAGAAGAAGAGG+AGG - chr5_3:10670929-10670948 None:intergenic 50.0%
CGAACCATCTGGAGAAGAAG+AGG - chr5_3:10670932-10670951 None:intergenic 50.0%
!! CTTTGGAGTCACGAACCATC+TGG - chr5_3:10670943-10670962 None:intergenic 50.0%
ATAGGCAACGCGGAGTTTGA+AGG - chr5_3:10671098-10671117 None:intergenic 50.0%
CTTATAAGCGTGTACGTGGC+AGG + chr5_3:10671710-10671729 Msa0798100:CDS 50.0%
AATCCTGGACTCACCGCTTA+TGG - chr5_3:10671884-10671903 None:intergenic 50.0%
GGCCAGATATCATGCATGAG+AGG + chr5_3:10671909-10671928 Msa0798100:three_prime_UTR 50.0%
!! ATAGTCAGCCATTCTGGCTC+TGG - chr5_3:10671989-10672008 None:intergenic 50.0%
TCTCGTCTTTCGCGGTTTCT+TGG + chr5_3:10670857-10670876 Msa0798100:CDS 50.0%
ACCTCCTCTTCTTCTCCAGA+TGG + chr5_3:10670925-10670944 Msa0798100:CDS 50.0%
ACCATCTGGAGAAGAAGAGG+AGG - chr5_3:10670929-10670948 None:intergenic 50.0%
CGAACCATCTGGAGAAGAAG+AGG - chr5_3:10670932-10670951 None:intergenic 50.0%
!! CTTTGGAGTCACGAACCATC+TGG - chr5_3:10670943-10670962 None:intergenic 50.0%
ATAGGCAACGCGGAGTTTGA+AGG - chr5_3:10671098-10671117 None:intergenic 50.0%
CTTATAAGCGTGTACGTGGC+AGG + chr5_3:10671710-10671729 Msa0798100:CDS 50.0%
AATCCTGGACTCACCGCTTA+TGG - chr5_3:10671884-10671903 None:intergenic 50.0%
GGCCAGATATCATGCATGAG+AGG + chr5_3:10671909-10671928 Msa0798100:three_prime_UTR 50.0%
!! ATAGTCAGCCATTCTGGCTC+TGG - chr5_3:10671989-10672008 None:intergenic 50.0%
! GCAGGTTGACCGAGGTATGA+TGG + chr5_3:10671728-10671747 Msa0798100:intron 55.0%
! ATAAGGGCTGGTGCACCTAC+TGG - chr5_3:10671854-10671873 None:intergenic 55.0%
TCACCATAAGCGGTGAGTCC+AGG + chr5_3:10671878-10671897 Msa0798100:three_prime_UTR 55.0%
! CGGTGAGTCCAGGATTAGTG+AGG + chr5_3:10671888-10671907 Msa0798100:three_prime_UTR 55.0%
! GCAGGTTGACCGAGGTATGA+TGG + chr5_3:10671728-10671747 Msa0798100:intron 55.0%
! ATAAGGGCTGGTGCACCTAC+TGG - chr5_3:10671854-10671873 None:intergenic 55.0%
TCACCATAAGCGGTGAGTCC+AGG + chr5_3:10671878-10671897 Msa0798100:three_prime_UTR 55.0%
! CGGTGAGTCCAGGATTAGTG+AGG + chr5_3:10671888-10671907 Msa0798100:three_prime_UTR 55.0%
! TGTACGTGGCAGGTTGACCG+AGG + chr5_3:10671720-10671739 Msa0798100:CDS 60.0%
! TGTACGTGGCAGGTTGACCG+AGG + chr5_3:10671720-10671739 Msa0798100:CDS 60.0%
GAGGTAGGACTTGGCCCTGC+TGG + chr5_3:10671458-10671477 Msa0798100:CDS 65.0%
GCAGGGGACAGGCTTCCAGT+AGG + chr5_3:10671836-10671855 Msa0798100:intron 65.0%
GAGGTAGGACTTGGCCCTGC+TGG + chr5_3:10671458-10671477 Msa0798100:CDS 65.0%
GCAGGGGACAGGCTTCCAGT+AGG + chr5_3:10671836-10671855 Msa0798100:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 10670815 10672235 10670815 ID=Msa0798100;Name=Msa0798100
chr5_3 mRNA 10670815 10672235 10670815 ID=Msa0798100-mRNA-1;Parent=Msa0798100;Name=Msa0798100-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0.66|0.75|1|1|1|4|378|137
chr5_3 exon 10670815 10670946 10670815 ID=Msa0798100-mRNA-1:exon:4416;Parent=Msa0798100-mRNA-1
chr5_3 exon 10671383 10671547 10671383 ID=Msa0798100-mRNA-1:exon:4417;Parent=Msa0798100-mRNA-1
chr5_3 exon 10671643 10671741 10671643 ID=Msa0798100-mRNA-1:exon:4418;Parent=Msa0798100-mRNA-1
chr5_3 exon 10671840 10672235 10671840 ID=Msa0798100-mRNA-1:exon:4419;Parent=Msa0798100-mRNA-1
chr5_3 CDS 10670815 10670946 10670815 ID=Msa0798100-mRNA-1:cds;Parent=Msa0798100-mRNA-1
chr5_3 CDS 10671383 10671547 10671383 ID=Msa0798100-mRNA-1:cds;Parent=Msa0798100-mRNA-1
chr5_3 CDS 10671643 10671741 10671643 ID=Msa0798100-mRNA-1:cds;Parent=Msa0798100-mRNA-1
chr5_3 CDS 10671840 10671857 10671840 ID=Msa0798100-mRNA-1:cds;Parent=Msa0798100-mRNA-1
chr5_3 three_prime_UTR 10671858 10672235 10671858 ID=Msa0798100-mRNA-1:three_prime_utr;Parent=Msa0798100-mRNA-1
Gene Sequence

>Msa0798100

GTTCCTTTGTTATGTGGATTTCACTCTTTGGAGAAAACAACATCTCGTCTTTCGCGGTTTCTTGGTAAAACAGGGAAGCATTTATTTTTATCTGATGGTAAGAATGAAAAACCTCCTCTTCTTCTCCAGATGATGTATAGCGACTATATGAAGAGTTATAGAGAGAATATGGCAAATTTCTTAGAATCTGAGCTACTGATAGACATTGAGGTAGGACTTGGCCCTGCTGGAGAACTTAGATATCTTTCTTTTTCAGAATGCCTAGACTGGGTATTTCTTGGTATTGGAGAATTTAATGGTGCTCATGATGCCGAGATTCTTACATTAAGCTTTACTCATGATGCTGAAAGGTGTAGTTATCAGTCTTATAAGCGTGTACGTGGCAGGTTGACCGAGGGGACAGGCTTCCAGTAG
Protein sequence

>Msa0798100

VPLLCGFHSLEKTTSRLSRFLGKTGKHLFLSDGKNEKPPLLLQMMYSDYMKSYRENMANFLESELLIDIEVGLGPAGELRYLSFSECLDWVFLGIGEFNGAHDAEILTLSFTHDAERCSYQSYKRVRGRLTEGTGFQ*