Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799480 | sp|O65015|AMYB_TRIRP | 77.778 | 54 | 12 | 0 | 135 | 188 | 154 | 207 | 2.50e-21 | 95.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799480 | B7FLJ7 | 69.620 | 79 | 16 | 2 | 111 | 189 | 131 | 201 | 9.31e-25 | 107 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0053690 | Msa0799480 | 0.895234 | 1.163191e-75 | -8.615850e-47 |
| Msa0053700 | Msa0799480 | 0.842390 | 2.663371e-58 | -8.615850e-47 |
| Msa0702150 | Msa0799480 | 0.821055 | 4.949232e-53 | -8.615850e-47 |
| Msa0702270 | Msa0799480 | 0.806111 | 9.640843e-50 | -8.615850e-47 |
| Msa0747170 | Msa0799480 | 0.825289 | 5.084487e-54 | -8.615850e-47 |
| Msa0798090 | Msa0799480 | 0.840615 | 7.814164e-58 | -8.615850e-47 |
| Msa0798100 | Msa0799480 | 0.823747 | 1.172725e-53 | -8.615850e-47 |
| Msa0799480 | Msa0990830 | 0.801961 | 7.034229e-49 | -8.615850e-47 |
| Msa0799480 | Msa1059310 | 0.800932 | 1.142813e-48 | -8.615850e-47 |
| Msa0799480 | Msa1067070 | 0.930083 | 2.741764e-93 | -8.615850e-47 |
| Msa0799480 | Msa1253400 | 0.924564 | 5.954772e-90 | -8.615850e-47 |
| Msa0799480 | Msa1253810 | 0.814526 | 1.473195e-51 | -8.615850e-47 |
| Msa0799480 | Msa1279590 | 0.845660 | 3.536575e-59 | -8.615850e-47 |
| Msa0799480 | Msa1289300 | 0.906466 | 1.440040e-80 | -8.615850e-47 |
| Msa0799480 | Msa1297600 | 0.899886 | 1.270871e-77 | -8.615850e-47 |
| Msa0799480 | Msa1320580 | 0.801296 | 9.625695e-49 | -8.615850e-47 |
| Msa0799480 | Msa1323800 | 0.826915 | 2.087750e-54 | -8.615850e-47 |
| Msa0164370 | Msa0799480 | 0.912978 | 1.047376e-83 | -8.615850e-47 |
| Msa0183870 | Msa0799480 | 0.801734 | 7.830359e-49 | -8.615850e-47 |
| Msa0364990 | Msa0799480 | 0.939719 | 7.916921e-100 | -8.615850e-47 |
| Msa0414020 | Msa0799480 | 0.886738 | 2.633514e-72 | -8.615850e-47 |
| Msa0431770 | Msa0799480 | 0.812691 | 3.732125e-51 | -8.615850e-47 |
| Msa0337500 | Msa0799480 | 0.882238 | 1.231651e-70 | -8.615850e-47 |
| Msa0337510 | Msa0799480 | 0.870001 | 2.029224e-66 | -8.615850e-47 |
| Msa0576730 | Msa0799480 | 0.803554 | 3.298501e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799480 | MtrunA17_Chr2g0323051 | 67.500 | 80 | 24 | 2 | 135 | 214 | 227 | 304 | 2.69e-27 | 109 |
| Msa0799480 | MtrunA17_Chr3g0140681 | 76.667 | 60 | 8 | 1 | 82 | 135 | 194 | 253 | 1.91e-23 | 97.8 |
| Msa0799480 | MtrunA17_Chr4g0023601 | 58.904 | 73 | 27 | 1 | 119 | 188 | 135 | 207 | 8.90e-21 | 90.9 |
| Msa0799480 | MtrunA17_Chr5g0399991 | 56.364 | 55 | 22 | 2 | 135 | 188 | 230 | 283 | 9.31e-13 | 67.4 |
| Msa0799480 | MtrunA17_Chr5g0400001 | 56.364 | 55 | 22 | 2 | 135 | 188 | 228 | 281 | 9.66e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799480 | AT2G32290.1 | 52.222 | 90 | 41 | 2 | 135 | 224 | 219 | 306 | 8.35e-22 | 94.4 |
| Msa0799480 | AT4G15210.3 | 66.667 | 54 | 18 | 0 | 135 | 188 | 103 | 156 | 9.05e-20 | 88.2 |
| Msa0799480 | AT4G15210.4 | 66.667 | 54 | 18 | 0 | 135 | 188 | 103 | 156 | 9.05e-20 | 88.2 |
| Msa0799480 | AT4G15210.2 | 66.667 | 54 | 18 | 0 | 135 | 188 | 156 | 209 | 9.67e-20 | 87.8 |
| Msa0799480 | AT4G15210.1 | 66.667 | 54 | 18 | 0 | 135 | 188 | 156 | 209 | 1.06e-19 | 88.2 |
| Msa0799480 | AT4G00490.1 | 26.923 | 182 | 107 | 4 | 34 | 189 | 109 | 290 | 1.34e-13 | 70.1 |
| Msa0799480 | AT2G45880.1 | 31.452 | 124 | 62 | 3 | 89 | 189 | 320 | 443 | 4.29e-12 | 65.9 |
| Msa0799480 | AT5G45300.3 | 46.296 | 54 | 29 | 0 | 135 | 188 | 410 | 463 | 2.71e-11 | 63.5 |
| Msa0799480 | AT5G45300.1 | 46.296 | 54 | 29 | 0 | 135 | 188 | 396 | 449 | 2.87e-11 | 63.5 |
| Msa0799480 | AT5G45300.2 | 46.296 | 54 | 29 | 0 | 135 | 188 | 394 | 447 | 2.89e-11 | 63.5 |
Find 69 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATGTTTATAGATTAATT+AGG | 0.166605 | 5_3:+12709043 | Msa0799480:three_prime_UTR |
| GCAGGGAGAACAAGCTTTAT+TGG | 0.217900 | 5_3:+12705109 | Msa0799480:intron |
| TATGATAATTTAATCAAAAT+TGG | 0.267934 | 5_3:+12709114 | Msa0799480:three_prime_UTR |
| TCTCGTCTTTCGCGGTTTCT+TGG | 0.271778 | 5_3:+12707760 | Msa0799480:CDS |
| ATATGTTTATAGATTAATTA+GGG | 0.278241 | 5_3:+12709044 | Msa0799480:three_prime_UTR |
| CTTCAAATAGTCAGCCATTC+TGG | 0.282618 | 5_3:-12708895 | None:intergenic |
| AGTGACTATGACAATGTAAT+TGG | 0.287106 | 5_3:+12706521 | Msa0799480:CDS |
| AAGCTTAATAGCAGCCTTAC+TGG | 0.305599 | 5_3:+12709071 | Msa0799480:three_prime_UTR |
| GAAGAGTTATAGAGAGAATA+TGG | 0.309022 | 5_3:+12708303 | Msa0799480:CDS |
| GGCTGGGTATTTCCTGGTAT+TGG | 0.319528 | 5_3:+12708418 | Msa0799480:CDS |
| GTTATGTGGATTTCACTCTT+TGG | 0.332758 | 5_3:+12707726 | Msa0799480:CDS |
| TCGCGGTTTCTTGGTAAAAC+AGG | 0.335407 | 5_3:+12707769 | Msa0799480:CDS |
| AATCTTGGACTCACCGCTTA+TGG | 0.358745 | 5_3:-12708784 | None:intergenic |
| TTTCTGCTTACTTTCAGATA+TGG | 0.359746 | 5_3:-12706551 | None:intergenic |
| CCGCTTATGGTGACATCATA+AGG | 0.359764 | 5_3:-12708771 | None:intergenic |
| TCCCTCTCATGCATGATATC+TGG | 0.374941 | 5_3:-12708814 | None:intergenic |
| CTTTAGGTTCCTTTGTTATG+TGG | 0.393628 | 5_3:+12707712 | Msa0799480:intron |
| CAGGTTCTACATGGTGCATC+TGG | 0.398474 | 5_3:+12705683 | Msa0799480:intron |
| TGCCTAGGCTGGGTATTTCC+TGG | 0.407995 | 5_3:+12708412 | Msa0799480:CDS |
| AGCTGATAATCTGTGTTTCA+AGG | 0.417769 | 5_3:+12705132 | Msa0799480:CDS |
| ATATCTGGCCTCACTAATCT+TGG | 0.421428 | 5_3:-12708799 | None:intergenic |
| ATAAGGGCTGGTGCACCTAC+TGG | 0.427494 | 5_3:-12708754 | None:intergenic |
| ATAGTCAGCCATTCTGGCTC+TGG | 0.443426 | 5_3:-12708889 | None:intergenic |
| TATATCTATATATATGTTCA+AGG | 0.447915 | 5_3:-12708979 | None:intergenic |
| AAACAGCATCTCGTCTTTCG+CGG | 0.485483 | 5_3:+12707752 | Msa0799480:CDS |
| GAGGTAGGACTTGGCCCTGC+TGG | 0.486945 | 5_3:+12708361 | Msa0799480:CDS |
| CTTATAAGCGTGTACGTGGC+AGG | 0.500665 | 5_3:+12708613 | Msa0799480:CDS |
| CGCTTATGGTGACATCATAA+GGG | 0.505983 | 5_3:-12708770 | None:intergenic |
| CGCGGTTTCTTGGTAAAACA+GGG | 0.510516 | 5_3:+12707770 | Msa0799480:CDS |
| ACCTCCTCTTCTTCTCCAGA+TGG | 0.522445 | 5_3:+12707828 | Msa0799480:CDS |
| AAAGCTTAATGTAAGAATCT+CGG | 0.527749 | 5_3:-12708559 | None:intergenic |
| TTGAGATTCCAGAGCCAGAA+TGG | 0.530384 | 5_3:+12708881 | Msa0799480:three_prime_UTR |
| CAGGTTGGTGAACTTGATGA+AGG | 0.530641 | 5_3:+12705807 | Msa0799480:CDS |
| TTGTCAAATATGAACCAGTA+AGG | 0.531051 | 5_3:-12709085 | None:intergenic |
| AGATATCTAAGTTCTCCAGC+AGG | 0.532605 | 5_3:-12708376 | None:intergenic |
| AGGTGATGCATCACAGAGAA+TGG | 0.535230 | 5_3:+12705977 | Msa0799480:intron |
| GTCGTTGCGTGCTGAACAAA+AGG | 0.535793 | 5_3:+12705758 | Msa0799480:CDS |
| AAATTGGAAATGCAGGGGAC+AGG | 0.536511 | 5_3:+12708728 | Msa0799480:intron |
| TATGGTGACATCATAAGGGC+TGG | 0.556208 | 5_3:-12708766 | None:intergenic |
| AATGGCTGACTATTTGAAGC+AGG | 0.562267 | 5_3:+12708899 | Msa0799480:three_prime_UTR |
| CGAACCATCTGGAGAAGAAG+AGG | 0.566975 | 5_3:-12707832 | None:intergenic |
| ATGTTTATAGATTAATTAGG+GGG | 0.570090 | 5_3:+12709046 | Msa0799480:three_prime_UTR |
| GCTTTACTCATGATGCTGAA+AGG | 0.577029 | 5_3:+12708577 | Msa0799480:CDS |
| CCTTATGATGTCACCATAAG+CGG | 0.579231 | 5_3:+12708771 | Msa0799480:CDS |
| TTGCGTGCTGAACAAAAGGA+TGG | 0.589695 | 5_3:+12705762 | Msa0799480:CDS |
| GCCAGATATCATGCATGAGA+GGG | 0.594778 | 5_3:+12708813 | Msa0799480:exon |
| GGCCAGATATCATGCATGAG+AGG | 0.594930 | 5_3:+12708812 | Msa0799480:exon |
| ATAGACATTGAGGTAGGACT+TGG | 0.597655 | 5_3:+12708352 | Msa0799480:CDS |
| TGAGCTACTGATAGACATTG+AGG | 0.599509 | 5_3:+12708342 | Msa0799480:CDS |
| TGGTGAACTTGATGAAGGGA+AGG | 0.605242 | 5_3:+12705812 | Msa0799480:CDS |
| GAATGCGATTGAAGCGCGCA+TGG | 0.609128 | 5_3:+12706013 | Msa0799480:CDS |
| CAGTCTTATAAGCGTGTACG+TGG | 0.609552 | 5_3:+12708609 | Msa0799480:CDS |
| CAGAGATCCTTAAAAGCTCG+AGG | 0.621293 | 5_3:+12708857 | Msa0799480:three_prime_UTR |
| TATTTGAAGCAGGATGGCAA+AGG | 0.629381 | 5_3:+12708909 | Msa0799480:three_prime_UTR |
| AGGTTGGTGAACTTGATGAA+GGG | 0.629603 | 5_3:+12705808 | Msa0799480:CDS |
| ACATTAAATTCTCCAATACC+AGG | 0.631717 | 5_3:-12708430 | None:intergenic |
| GATATCTAAGTTCTCCAGCA+GGG | 0.632849 | 5_3:-12708375 | None:intergenic |
| TACCAGGAAATACCCAGCCT+AGG | 0.637604 | 5_3:-12708414 | None:intergenic |
| ACAAAAGGATGGATCAGTGG+TGG | 0.638622 | 5_3:+12705773 | Msa0799480:CDS |
| CTACTGATAGACATTGAGGT+AGG | 0.639731 | 5_3:+12708346 | Msa0799480:CDS |
| GCTGACTATTTGAAGCAGGA+TGG | 0.643683 | 5_3:+12708903 | Msa0799480:three_prime_UTR |
| ACCATCTGGAGAAGAAGAGG+AGG | 0.646740 | 5_3:-12707829 | None:intergenic |
| TATGTTTATAGATTAATTAG+GGG | 0.649576 | 5_3:+12709045 | Msa0799480:three_prime_UTR |
| GCAGGGGACAGGCTTCCAGT+AGG | 0.671994 | 5_3:+12708739 | Msa0799480:intron |
| GAGTGAAATCCACATAACAA+AGG | 0.672556 | 5_3:-12707721 | None:intergenic |
| CGGTGAGTCCAAGATTAGTG+AGG | 0.684380 | 5_3:+12708791 | Msa0799480:CDS |
| AGTGGTGGAGAGTAGAACAC+AGG | 0.692386 | 5_3:+12705788 | Msa0799480:CDS |
| TGAACAAAAGGATGGATCAG+TGG | 0.692488 | 5_3:+12705770 | Msa0799480:CDS |
| GTGGAGAGTAGAACACAGGT+TGG | 0.695448 | 5_3:+12705792 | Msa0799480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATGTTTATAGATTAATT+AGG | + | chr5_3:12709043-12709062 | Msa0799480:three_prime_UTR | 10.0% |
| !! | ATATGTTTATAGATTAATTA+GGG | + | chr5_3:12709044-12709063 | Msa0799480:three_prime_UTR | 10.0% |
| !! | TGATTATAATGTAAAATAAG+TGG | + | chr5_3:12705281-12705300 | Msa0799480:intron | 15.0% |
| !!! | ATATATGTTGTTTTGTAAAT+AGG | + | chr5_3:12706402-12706421 | Msa0799480:intron | 15.0% |
| !! | AAAATAAAACAACTTTCAAA+TGG | - | chr5_3:12706666-12706685 | None:intergenic | 15.0% |
| !!! | TTTATTTTACAAATGAATTG+AGG | + | chr5_3:12706678-12706697 | Msa0799480:intron | 15.0% |
| !! | AAATTATTGAGAAATAATGT+TGG | + | chr5_3:12706872-12706891 | Msa0799480:intron | 15.0% |
| !! | TTACATGAATTTAATATCTT+TGG | - | chr5_3:12707863-12707882 | None:intergenic | 15.0% |
| !! | AAAGATATTAAATTCATGTA+AGG | + | chr5_3:12707862-12707881 | Msa0799480:intron | 15.0% |
| !! | AAAGAAGTAATAATAAAAAG+TGG | - | chr5_3:12708178-12708197 | None:intergenic | 15.0% |
| !!! | CATAACAAATTTTAGTAAAA+TGG | - | chr5_3:12708679-12708698 | None:intergenic | 15.0% |
| !! | TGGAATATTTATATGAAAAT+TGG | + | chr5_3:12708712-12708731 | Msa0799480:intron | 15.0% |
| !! | TATATCTATATATATGTTCA+AGG | - | chr5_3:12708982-12709001 | None:intergenic | 15.0% |
| !! | TATGTTTATAGATTAATTAG+GGG | + | chr5_3:12709045-12709064 | Msa0799480:three_prime_UTR | 15.0% |
| !!! | ATTTTTGAAAAACTAGCAAT+TGG | + | chr5_3:12705366-12705385 | Msa0799480:intron | 20.0% |
| !! | GTACATAAATTTGAATTCAT+TGG | + | chr5_3:12705709-12705728 | Msa0799480:intron | 20.0% |
| !! | CATATATAATATTTGTGTAC+TGG | - | chr5_3:12706051-12706070 | None:intergenic | 20.0% |
| !!! | AATGTGCAAATTTTTTGAAA+GGG | - | chr5_3:12706136-12706155 | None:intergenic | 20.0% |
| !!! | AAATGTGCAAATTTTTTGAA+AGG | - | chr5_3:12706137-12706156 | None:intergenic | 20.0% |
| !!! | TTTAAAAAACATGGCAATTT+TGG | - | chr5_3:12706229-12706248 | None:intergenic | 20.0% |
| !!! | ACATACATCTTTAAAAAACA+TGG | - | chr5_3:12706238-12706257 | None:intergenic | 20.0% |
| !!! | GTTTTTTAAAGATGTATGTT+TGG | + | chr5_3:12706239-12706258 | Msa0799480:intron | 20.0% |
| !! | GTAGGTATTTATTGAATAAA+TGG | + | chr5_3:12706795-12706814 | Msa0799480:intron | 20.0% |
| !! | TGTTATAATAATGAGTGAAT+AGG | + | chr5_3:12706899-12706918 | Msa0799480:intron | 20.0% |
| !! | ACTATATGAATTTCAGAATT+TGG | + | chr5_3:12707155-12707174 | Msa0799480:intron | 20.0% |
| !! | GTATGTAACAAACAAAAATA+TGG | - | chr5_3:12707212-12707231 | None:intergenic | 20.0% |
| !!! | ATATAGTTAGTATCACTTTT+AGG | + | chr5_3:12707293-12707312 | Msa0799480:intron | 20.0% |
| !!! | AAGCATTTATTTTTATCTGA+TGG | + | chr5_3:12707793-12707812 | Msa0799480:CDS | 20.0% |
| !! | TATTATATCTCTTTCTCTAT+AGG | + | chr5_3:12707962-12707981 | Msa0799480:intron | 20.0% |
| !! | TGAACTAAAACAAAAGAATA+CGG | - | chr5_3:12708041-12708060 | None:intergenic | 20.0% |
| !! | TGTTATGTAATGTTTAATGT+TGG | + | chr5_3:12708692-12708711 | Msa0799480:intron | 20.0% |
| !! | ATGTTTATAGATTAATTAGG+GGG | + | chr5_3:12709046-12709065 | Msa0799480:three_prime_UTR | 20.0% |
| ! | AAACTGAAAAAGATTTGAGT+AGG | + | chr5_3:12704852-12704871 | Msa0799480:intron | 25.0% |
| ! | TATCTGTGATTGTAAATTTG+TGG | + | chr5_3:12705002-12705021 | Msa0799480:intron | 25.0% |
| ! | TATGTAATATTTAAGCCATG+AGG | - | chr5_3:12705246-12705265 | None:intergenic | 25.0% |
| ! | AATTCTCCATTAGAAAGATT+GGG | - | chr5_3:12705335-12705354 | None:intergenic | 25.0% |
| ! | TTGAAATTTATTGTGTGATC+TGG | + | chr5_3:12705551-12705570 | Msa0799480:intron | 25.0% |
| !!! | CATAAAATGTTTTTTGCTAC+AGG | + | chr5_3:12705664-12705683 | Msa0799480:intron | 25.0% |
| !! | TTTTCTTTTTGTAAGTTGCA+TGG | - | chr5_3:12705735-12705754 | None:intergenic | 25.0% |
| ! | TTAAAGATGTATGTTTGGAT+TGG | + | chr5_3:12706244-12706263 | Msa0799480:intron | 25.0% |
| ! | ATAATTGTGTTTGTTCATGA+AGG | + | chr5_3:12706307-12706326 | Msa0799480:intron | 25.0% |
| ! | TAGGAAACTTCTATTTGATT+AGG | + | chr5_3:12706421-12706440 | Msa0799480:intron | 25.0% |
| ! | GTTAGAGATGAGAAAATTAA+GGG | - | chr5_3:12706464-12706483 | None:intergenic | 25.0% |
| ! | AGTTAGAGATGAGAAAATTA+AGG | - | chr5_3:12706465-12706484 | None:intergenic | 25.0% |
| !!! | TCTCTAACTTTTGTTTATTG+TGG | + | chr5_3:12706476-12706495 | Msa0799480:intron | 25.0% |
| !! | ATTTTACAAATGAATTGAGG+TGG | + | chr5_3:12706681-12706700 | Msa0799480:intron | 25.0% |
| ! | AGAACACATATAATTGTGTT+TGG | + | chr5_3:12706746-12706765 | Msa0799480:intron | 25.0% |
| ! | CATGTATATTATCTTGCATA+TGG | + | chr5_3:12706818-12706837 | Msa0799480:intron | 25.0% |
| ! | AGTTCCTGATGATTATATTT+AGG | + | chr5_3:12706956-12706975 | Msa0799480:intron | 25.0% |
| ! | CAAACCTAAATATAATCATC+AGG | - | chr5_3:12706963-12706982 | None:intergenic | 25.0% |
| !! | TCATTGAAGATATTTTGCAT+TGG | - | chr5_3:12707089-12707108 | None:intergenic | 25.0% |
| !! | TATCTTCAATGATTTGTGTA+TGG | + | chr5_3:12707097-12707116 | Msa0799480:intron | 25.0% |
| ! | AATTCATATAGTTGAAGAAC+TGG | - | chr5_3:12707147-12707166 | None:intergenic | 25.0% |
| ! | GTAACAAACAAAAATATGGT+GGG | - | chr5_3:12707208-12707227 | None:intergenic | 25.0% |
| ! | TGTAACAAACAAAAATATGG+TGG | - | chr5_3:12707209-12707228 | None:intergenic | 25.0% |
| !! | TTTGTTTGTTACATACTAGA+TGG | + | chr5_3:12707216-12707235 | Msa0799480:intron | 25.0% |
| !! | TTTAACTTCTAATGCAAATC+AGG | + | chr5_3:12707331-12707350 | Msa0799480:intron | 25.0% |
| ! | GCAGACGTAATAAAATTAAT+AGG | - | chr5_3:12707411-12707430 | None:intergenic | 25.0% |
| ! | GTTATTGAGGGTAATTAAAT+AGG | + | chr5_3:12707599-12707618 | Msa0799480:intron | 25.0% |
| !! | TTTGGAATTTCACATACTTT+AGG | + | chr5_3:12707696-12707715 | Msa0799480:intron | 25.0% |
| !! | TATGTTGTTTGTTCATGATT+TGG | - | chr5_3:12707937-12707956 | None:intergenic | 25.0% |
| ! | GATAGTAATAGAATATGCAA+AGG | - | chr5_3:12708074-12708093 | None:intergenic | 25.0% |
| ! | AAAGCTTAATGTAAGAATCT+CGG | - | chr5_3:12708562-12708581 | None:intergenic | 25.0% |
| ! | TATATGAAAATTGGAAATGC+AGG | + | chr5_3:12708721-12708740 | Msa0799480:intron | 25.0% |
| ! | ATATGAAAATTGGAAATGCA+GGG | + | chr5_3:12708722-12708741 | Msa0799480:intron | 25.0% |
| ! | AACTGAGCATTTAAAATCTC+TGG | - | chr5_3:12704982-12705001 | None:intergenic | 30.0% |
| GTGATTGTAAATTTGTGGTA+AGG | + | chr5_3:12705007-12705026 | Msa0799480:intron | 30.0% | |
| ! | GTTAGGTTTTTCTGTGAAAT+TGG | + | chr5_3:12705058-12705077 | Msa0799480:intron | 30.0% |
| ! | TTTTTGCCCAATCTTTCTAA+TGG | + | chr5_3:12705326-12705345 | Msa0799480:intron | 30.0% |
| CAATTCTCCATTAGAAAGAT+TGG | - | chr5_3:12705336-12705355 | None:intergenic | 30.0% | |
| ! | ATATTGGGGAAAAGGTTTTA+AGG | - | chr5_3:12705450-12705469 | None:intergenic | 30.0% |
| GGAAATAATTCTCAATGCAA+TGG | + | chr5_3:12705491-12705510 | Msa0799480:intron | 30.0% | |
| AATTCTCAATGCAATGGTTA+TGG | + | chr5_3:12705497-12705516 | Msa0799480:intron | 30.0% | |
| ATGAATTGTTGAAGCAGAAT+AGG | + | chr5_3:12705937-12705956 | Msa0799480:intron | 30.0% | |
| ! | GAGTGTTTAGATTTGTTTGT+AGG | + | chr5_3:12706271-12706290 | Msa0799480:intron | 30.0% |
| !! | AAGCTAAGTTGATGTATCAT+AGG | - | chr5_3:12706347-12706366 | None:intergenic | 30.0% |
| AGTGACTATGACAATGTAAT+TGG | + | chr5_3:12706521-12706540 | Msa0799480:CDS | 30.0% | |
| TTTCTGCTTACTTTCAGATA+TGG | - | chr5_3:12706554-12706573 | None:intergenic | 30.0% | |
| TCTGAATTATGAATCTTGCA+TGG | + | chr5_3:12706600-12706619 | Msa0799480:intron | 30.0% | |
| ! | CAAATGGTGTAAAAGCATAT+TGG | - | chr5_3:12706650-12706669 | None:intergenic | 30.0% |
| ! | GGAATTTTGAACTTCATTGA+TGG | + | chr5_3:12706767-12706786 | Msa0799480:intron | 30.0% |
| !!! | ACAATTTTTTTCCTTACCCA+TGG | + | chr5_3:12707009-12707028 | Msa0799480:intron | 30.0% |
| AATTTCTGTCTCCTTTACTT+TGG | + | chr5_3:12707552-12707571 | Msa0799480:intron | 30.0% | |
| ! | GATTTGGTTTCTAAACCATA+AGG | - | chr5_3:12707921-12707940 | None:intergenic | 30.0% |
| TCATTTAAACTTACAGACAG+TGG | - | chr5_3:12708108-12708127 | None:intergenic | 30.0% | |
| GAAGAGTTATAGAGAGAATA+TGG | + | chr5_3:12708303-12708322 | Msa0799480:CDS | 30.0% | |
| ACATTAAATTCTCCAATACC+AGG | - | chr5_3:12708433-12708452 | None:intergenic | 30.0% | |
| TGAACATATATGTATACACG+TGG | - | chr5_3:12708496-12708515 | None:intergenic | 30.0% | |
| CGTGTATACATATATGTTCA+TGG | + | chr5_3:12708496-12708515 | Msa0799480:intron | 30.0% | |
| TATGAAAATTGGAAATGCAG+GGG | + | chr5_3:12708723-12708742 | Msa0799480:intron | 30.0% | |
| !! | CTCTGAGGAAATTTTGTATT+TGG | - | chr5_3:12708842-12708861 | None:intergenic | 30.0% |
| TGAAGAAACTGATGAAAAAG+AGG | + | chr5_3:12708947-12708966 | Msa0799480:three_prime_UTR | 30.0% | |
| GAAGAAACTGATGAAAAAGA+GGG | + | chr5_3:12708948-12708967 | Msa0799480:three_prime_UTR | 30.0% | |
| TTGTCAAATATGAACCAGTA+AGG | - | chr5_3:12709088-12709107 | None:intergenic | 30.0% | |
| AGATAGTGATCCTATGATAG+AGG | + | chr5_3:12704913-12704932 | Msa0799480:intron | 35.0% | |
| TGGATTTCTGACTATGCTAT+TGG | + | chr5_3:12704941-12704960 | Msa0799480:intron | 35.0% | |
| GGATTTCTGACTATGCTATT+GGG | + | chr5_3:12704942-12704961 | Msa0799480:intron | 35.0% | |
| ! | GACTTCAGTTACTTTCATCT+TGG | + | chr5_3:12705087-12705106 | Msa0799480:intron | 35.0% |
| AGCTGATAATCTGTGTTTCA+AGG | + | chr5_3:12705132-12705151 | Msa0799480:CDS | 35.0% | |
| AAGCATATTTATGCACCTCA+TGG | + | chr5_3:12705228-12705247 | Msa0799480:intron | 35.0% | |
| ! | TTTTTGCTACAGGTTCTACA+TGG | + | chr5_3:12705674-12705693 | Msa0799480:intron | 35.0% |
| ! | CAGCAGCATTAAACATCTTT+TGG | - | chr5_3:12706076-12706095 | None:intergenic | 35.0% |
| TTGTGTTTGTTCATGAAGGT+TGG | + | chr5_3:12706311-12706330 | Msa0799480:intron | 35.0% | |
| AGACTTACAAATCCTTAGAC+AGG | - | chr5_3:12706627-12706646 | None:intergenic | 35.0% | |
| ! | ACTTCATTGATGGTTGAAGT+AGG | + | chr5_3:12706777-12706796 | Msa0799480:intron | 35.0% |
| ! | CTTCAATGATTTGTGTATGG+AGG | + | chr5_3:12707100-12707119 | Msa0799480:intron | 35.0% |
| CATATAGTTGAAGAACTGGT+AGG | - | chr5_3:12707143-12707162 | None:intergenic | 35.0% | |
| !! | CACTTTTAGGTCATTGCTTT+AGG | + | chr5_3:12707306-12707325 | Msa0799480:intron | 35.0% |
| TGCAAATCAGGACAAACTAA+TGG | + | chr5_3:12707343-12707362 | Msa0799480:intron | 35.0% | |
| ! | GCATAAGCAGCTAATTCTTT+TGG | + | chr5_3:12707455-12707474 | Msa0799480:intron | 35.0% |
| AGAGTAATCAGCCAAAGTAA+AGG | - | chr5_3:12707566-12707585 | None:intergenic | 35.0% | |
| CTACAAGTGATGGTTATTGA+GGG | + | chr5_3:12707587-12707606 | Msa0799480:intron | 35.0% | |
| CATGTCATACTAATCTGTGT+TGG | + | chr5_3:12707653-12707672 | Msa0799480:intron | 35.0% | |
| ! | AAAGCTTCATGACATGGTTT+TGG | + | chr5_3:12707678-12707697 | Msa0799480:intron | 35.0% |
| ! | CTTTAGGTTCCTTTGTTATG+TGG | + | chr5_3:12707712-12707731 | Msa0799480:intron | 35.0% |
| GAGTGAAATCCACATAACAA+AGG | - | chr5_3:12707724-12707743 | None:intergenic | 35.0% | |
| GTTATGTGGATTTCACTCTT+TGG | + | chr5_3:12707726-12707745 | Msa0799480:CDS | 35.0% | |
| ! | TGATTTTCGCAACTTCCTTA+TGG | + | chr5_3:12707903-12707922 | Msa0799480:intron | 35.0% |
| TTCTCTATAGGTCTGCTTTA+CGG | + | chr5_3:12707974-12707993 | Msa0799480:intron | 35.0% | |
| GTCGTAACGAATATTTGCAT+AGG | - | chr5_3:12708019-12708038 | None:intergenic | 35.0% | |
| TTTCCCTTAGTTCCCTTAAT+TGG | + | chr5_3:12708251-12708270 | Msa0799480:intron | 35.0% | |
| ACACCAATTAAGGGAACTAA+GGG | - | chr5_3:12708257-12708276 | None:intergenic | 35.0% | |
| AACACCAATTAAGGGAACTA+AGG | - | chr5_3:12708258-12708277 | None:intergenic | 35.0% | |
| CTGCATCAAACACCAATTAA+GGG | - | chr5_3:12708266-12708285 | None:intergenic | 35.0% | |
| TCTGCATCAAACACCAATTA+AGG | - | chr5_3:12708267-12708286 | None:intergenic | 35.0% | |
| !!! | CTTTCTTTTTCAGAATGCCT+AGG | + | chr5_3:12708397-12708416 | Msa0799480:CDS | 35.0% |
| TGTATCCTGCATATTGTTTC+AGG | + | chr5_3:12708524-12708543 | Msa0799480:intron | 35.0% | |
| GTATCCTGCATATTGTTTCA+GGG | + | chr5_3:12708525-12708544 | Msa0799480:intron | 35.0% | |
| GAAATTGTTCCATCATACCT+CGG | - | chr5_3:12708643-12708662 | None:intergenic | 35.0% | |
| TAGTGATCCTATGATAGAGG+TGG | + | chr5_3:12704916-12704935 | Msa0799480:intron | 40.0% | |
| ATCCTATGATAGAGGTGGTT+TGG | + | chr5_3:12704921-12704940 | Msa0799480:intron | 40.0% | |
| ATCCAAACCACCTCTATCAT+AGG | - | chr5_3:12704926-12704945 | None:intergenic | 40.0% | |
| AGAATGACCTCACGAACAAT+TGG | - | chr5_3:12705033-12705052 | None:intergenic | 40.0% | |
| TGAGGTCATTCTCAAAGGTT+AGG | + | chr5_3:12705041-12705060 | Msa0799480:intron | 40.0% | |
| ! | TCAGTTACTTTCATCTTGGC+AGG | + | chr5_3:12705091-12705110 | Msa0799480:intron | 40.0% |
| ! | CAGTTACTTTCATCTTGGCA+GGG | + | chr5_3:12705092-12705111 | Msa0799480:intron | 40.0% |
| TTGCTACACTCACATACCTT+TGG | + | chr5_3:12705183-12705202 | Msa0799480:intron | 40.0% | |
| ATACCTTTGGATCACTTGCA+AGG | + | chr5_3:12705196-12705215 | Msa0799480:intron | 40.0% | |
| TATCCTTGCAAGTGATCCAA+AGG | - | chr5_3:12705202-12705221 | None:intergenic | 40.0% | |
| !!! | AAGGTTTTAAGGCAAGCAAC+TGG | - | chr5_3:12705439-12705458 | None:intergenic | 40.0% |
| TGGAACTGATATTGGGGAAA+AGG | - | chr5_3:12705458-12705477 | None:intergenic | 40.0% | |
| CTGTGTTGGAACTGATATTG+GGG | - | chr5_3:12705464-12705483 | None:intergenic | 40.0% | |
| GCTGTGTTGGAACTGATATT+GGG | - | chr5_3:12705465-12705484 | None:intergenic | 40.0% | |
| TGCTGTGTTGGAACTGATAT+TGG | - | chr5_3:12705466-12705485 | None:intergenic | 40.0% | |
| TATTTCCCTGATTGCTGTGT+TGG | - | chr5_3:12705478-12705497 | None:intergenic | 40.0% | |
| ! | CAACTTTCAGCTTTTTGTCG+TGG | + | chr5_3:12705627-12705646 | Msa0799480:intron | 40.0% |
| TGAACAAAAGGATGGATCAG+TGG | + | chr5_3:12705770-12705789 | Msa0799480:CDS | 40.0% | |
| !! | AGGTTGGTGAACTTGATGAA+GGG | + | chr5_3:12705808-12705827 | Msa0799480:CDS | 40.0% |
| TTGTGCACACAGAACCAAAA+GGG | - | chr5_3:12705886-12705905 | None:intergenic | 40.0% | |
| CTGTGTCTGCTAATGACAAT+AGG | + | chr5_3:12705907-12705926 | Msa0799480:intron | 40.0% | |
| GGCAAGCAGAGATAAAAACT+TGG | - | chr5_3:12706115-12706134 | None:intergenic | 40.0% | |
| GTGAGTCTTCACATACACTA+AGG | - | chr5_3:12706991-12707010 | None:intergenic | 40.0% | |
| GTTATCACCAATCTGACCAT+GGG | - | chr5_3:12707028-12707047 | None:intergenic | 40.0% | |
| AGTTATCACCAATCTGACCA+TGG | - | chr5_3:12707029-12707048 | None:intergenic | 40.0% | |
| ! | CTAGATGGCATTCACCTTTT+AGG | + | chr5_3:12707231-12707250 | Msa0799480:intron | 40.0% |
| ! | AACCATGCTGACTACCTAAA+AGG | - | chr5_3:12707248-12707267 | None:intergenic | 40.0% |
| GATTACTCTGCTACAAGTGA+TGG | + | chr5_3:12707577-12707596 | Msa0799480:intron | 40.0% | |
| GCTACAAGTGATGGTTATTG+AGG | + | chr5_3:12707586-12707605 | Msa0799480:intron | 40.0% | |
| TTGGTGAAAGCTTCATGACA+TGG | + | chr5_3:12707672-12707691 | Msa0799480:intron | 40.0% | |
| GAATATTTGCATAGGCAACG+CGG | - | chr5_3:12708011-12708030 | None:intergenic | 40.0% | |
| TGAGCTACTGATAGACATTG+AGG | + | chr5_3:12708342-12708361 | Msa0799480:CDS | 40.0% | |
| CTACTGATAGACATTGAGGT+AGG | + | chr5_3:12708346-12708365 | Msa0799480:CDS | 40.0% | |
| ATAGACATTGAGGTAGGACT+TGG | + | chr5_3:12708352-12708371 | Msa0799480:CDS | 40.0% | |
| GATATCTAAGTTCTCCAGCA+GGG | - | chr5_3:12708378-12708397 | None:intergenic | 40.0% | |
| AGATATCTAAGTTCTCCAGC+AGG | - | chr5_3:12708379-12708398 | None:intergenic | 40.0% | |
| !! | TTTTTCAGAATGCCTAGGCT+GGG | + | chr5_3:12708402-12708421 | Msa0799480:CDS | 40.0% |
| GCTTTACTCATGATGCTGAA+AGG | + | chr5_3:12708577-12708596 | Msa0799480:CDS | 40.0% | |
| CGCTTATGGTGACATCATAA+GGG | - | chr5_3:12708773-12708792 | None:intergenic | 40.0% | |
| CCTTATGATGTCACCATAAG+CGG | + | chr5_3:12708771-12708790 | Msa0799480:CDS | 40.0% | |
| ATATCTGGCCTCACTAATCT+TGG | - | chr5_3:12708802-12708821 | None:intergenic | 40.0% | |
| ! | TCTCAATCCTCGAGCTTTTA+AGG | - | chr5_3:12708867-12708886 | None:intergenic | 40.0% |
| CTTCAAATAGTCAGCCATTC+TGG | - | chr5_3:12708898-12708917 | None:intergenic | 40.0% | |
| ! | AATGGCTGACTATTTGAAGC+AGG | + | chr5_3:12708899-12708918 | Msa0799480:three_prime_UTR | 40.0% |
| ! | TATTTGAAGCAGGATGGCAA+AGG | + | chr5_3:12708909-12708928 | Msa0799480:three_prime_UTR | 40.0% |
| AAGCTTAATAGCAGCCTTAC+TGG | + | chr5_3:12709071-12709090 | Msa0799480:three_prime_UTR | 40.0% | |
| GTTCGTGAGGTCATTCTCAA+AGG | + | chr5_3:12705036-12705055 | Msa0799480:intron | 45.0% | |
| ! | GCAGGGAGAACAAGCTTTAT+TGG | + | chr5_3:12705109-12705128 | Msa0799480:intron | 45.0% |
| AAGGCAAGCAACTGGTTACA+TGG | - | chr5_3:12705431-12705450 | None:intergenic | 45.0% | |
| TCAGTTCCAACACAGCAATC+AGG | + | chr5_3:12705469-12705488 | Msa0799480:intron | 45.0% | |
| CAGTTCCAACACAGCAATCA+GGG | + | chr5_3:12705470-12705489 | Msa0799480:intron | 45.0% | |
| CTCTTGCAATCGCTTCTAGA+TGG | - | chr5_3:12705523-12705542 | None:intergenic | 45.0% | |
| TTGCGTGCTGAACAAAAGGA+TGG | + | chr5_3:12705762-12705781 | Msa0799480:CDS | 45.0% | |
| ACAAAAGGATGGATCAGTGG+TGG | + | chr5_3:12705773-12705792 | Msa0799480:CDS | 45.0% | |
| !! | CAGGTTGGTGAACTTGATGA+AGG | + | chr5_3:12705807-12705826 | Msa0799480:CDS | 45.0% |
| TGGTGAACTTGATGAAGGGA+AGG | + | chr5_3:12705812-12705831 | Msa0799480:CDS | 45.0% | |
| AAGGCACGTTCGAAGAAACA+AGG | + | chr5_3:12705831-12705850 | Msa0799480:intron | 45.0% | |
| AGGCACGTTCGAAGAAACAA+GGG | + | chr5_3:12705832-12705851 | Msa0799480:intron | 45.0% | |
| GAAGAAACAAGGGAGGAAGA+GGG | + | chr5_3:12705842-12705861 | Msa0799480:intron | 45.0% | |
| AGAGGGATGTTGTGGATTTG+AGG | + | chr5_3:12705859-12705878 | Msa0799480:intron | 45.0% | |
| ! | TGTGGATTTGAGGACCCTTT+TGG | + | chr5_3:12705869-12705888 | Msa0799480:intron | 45.0% |
| CTTGTGCACACAGAACCAAA+AGG | - | chr5_3:12705887-12705906 | None:intergenic | 45.0% | |
| !! | AGGAAGCATTCTTGTCCTTC+AGG | + | chr5_3:12705957-12705976 | Msa0799480:intron | 45.0% |
| AGGTGATGCATCACAGAGAA+TGG | + | chr5_3:12705977-12705996 | Msa0799480:intron | 45.0% | |
| ATCTTGCATGGTCCTGTCTA+AGG | + | chr5_3:12706612-12706631 | Msa0799480:intron | 45.0% | |
| !! | AGGTGGTTTTTGCCACTTGA+AGG | + | chr5_3:12706698-12706717 | Msa0799480:intron | 45.0% |
| !! | TGGTTTTTGCCACTTGAAGG+TGG | + | chr5_3:12706701-12706720 | Msa0799480:intron | 45.0% |
| TTCCTTACCCATGGTCAGAT+TGG | + | chr5_3:12707018-12707037 | Msa0799480:intron | 45.0% | |
| !! | CACCTTTTAGGTAGTCAGCA+TGG | + | chr5_3:12707243-12707262 | Msa0799480:intron | 45.0% |
| AAACAGCATCTCGTCTTTCG+CGG | + | chr5_3:12707752-12707771 | Msa0799480:CDS | 45.0% | |
| TCGCGGTTTCTTGGTAAAAC+AGG | + | chr5_3:12707769-12707788 | Msa0799480:CDS | 45.0% | |
| CGCGGTTTCTTGGTAAAACA+GGG | + | chr5_3:12707770-12707789 | Msa0799480:CDS | 45.0% | |
| !!! | CTTTTTCAGAATGCCTAGGC+TGG | + | chr5_3:12708401-12708420 | Msa0799480:CDS | 45.0% |
| AGCACCCTGAAACAATATGC+AGG | - | chr5_3:12708532-12708551 | None:intergenic | 45.0% | |
| ! | CAGTCTTATAAGCGTGTACG+TGG | + | chr5_3:12708609-12708628 | Msa0799480:CDS | 45.0% |
| AAATTGGAAATGCAGGGGAC+AGG | + | chr5_3:12708728-12708747 | Msa0799480:intron | 45.0% | |
| TATGGTGACATCATAAGGGC+TGG | - | chr5_3:12708769-12708788 | None:intergenic | 45.0% | |
| CCGCTTATGGTGACATCATA+AGG | - | chr5_3:12708774-12708793 | None:intergenic | 45.0% | |
| AATCTTGGACTCACCGCTTA+TGG | - | chr5_3:12708787-12708806 | None:intergenic | 45.0% | |
| GCCAGATATCATGCATGAGA+GGG | + | chr5_3:12708813-12708832 | Msa0799480:exon | 45.0% | |
| TCCCTCTCATGCATGATATC+TGG | - | chr5_3:12708817-12708836 | None:intergenic | 45.0% | |
| !! | CGAGCTTTTAAGGATCTCTG+AGG | - | chr5_3:12708857-12708876 | None:intergenic | 45.0% |
| CAGAGATCCTTAAAAGCTCG+AGG | + | chr5_3:12708857-12708876 | Msa0799480:three_prime_UTR | 45.0% | |
| TTGAGATTCCAGAGCCAGAA+TGG | + | chr5_3:12708881-12708900 | Msa0799480:three_prime_UTR | 45.0% | |
| ! | GCTGACTATTTGAAGCAGGA+TGG | + | chr5_3:12708903-12708922 | Msa0799480:three_prime_UTR | 45.0% |
| !! | TAAAAAAAAATATTGAAATA+TGG | - | chr5_3:12706370-12706389 | None:intergenic | 5.0% |
| !!! | TCAATATTTTTTTTTATTTA+TGG | + | chr5_3:12706374-12706393 | Msa0799480:intron | 5.0% |
| GGTAAGGCCAATTGTTCGTG+AGG | + | chr5_3:12705023-12705042 | Msa0799480:intron | 50.0% | |
| CAGGTTCTACATGGTGCATC+TGG | + | chr5_3:12705683-12705702 | Msa0799480:intron | 50.0% | |
| GTCGTTGCGTGCTGAACAAA+AGG | + | chr5_3:12705758-12705777 | Msa0799480:CDS | 50.0% | |
| ! | AGTGGTGGAGAGTAGAACAC+AGG | + | chr5_3:12705788-12705807 | Msa0799480:CDS | 50.0% |
| GTGGAGAGTAGAACACAGGT+TGG | + | chr5_3:12705792-12705811 | Msa0799480:CDS | 50.0% | |
| CACGTTCGAAGAAACAAGGG+AGG | + | chr5_3:12705835-12705854 | Msa0799480:intron | 50.0% | |
| CGAAGAAACAAGGGAGGAAG+AGG | + | chr5_3:12705841-12705860 | Msa0799480:intron | 50.0% | |
| CTCTGTGATGCATCACCTGA+AGG | - | chr5_3:12705975-12705994 | None:intergenic | 50.0% | |
| TCCTTGAGACCACCTTCAAG+TGG | - | chr5_3:12706713-12706732 | None:intergenic | 50.0% | |
| TGAAGGTGGTCTCAAGGACA+AGG | + | chr5_3:12706715-12706734 | Msa0799480:intron | 50.0% | |
| CACCAATCTGACCATGGGTA+AGG | - | chr5_3:12707023-12707042 | None:intergenic | 50.0% | |
| GCTTATGCCCTCTACAACCA+AGG | - | chr5_3:12707443-12707462 | None:intergenic | 50.0% | |
| TCTCGTCTTTCGCGGTTTCT+TGG | + | chr5_3:12707760-12707779 | Msa0799480:CDS | 50.0% | |
| ACCTCCTCTTCTTCTCCAGA+TGG | + | chr5_3:12707828-12707847 | Msa0799480:CDS | 50.0% | |
| ACCATCTGGAGAAGAAGAGG+AGG | - | chr5_3:12707832-12707851 | None:intergenic | 50.0% | |
| CGAACCATCTGGAGAAGAAG+AGG | - | chr5_3:12707835-12707854 | None:intergenic | 50.0% | |
| !! | CTTTGGAGTCACGAACCATC+TGG | - | chr5_3:12707846-12707865 | None:intergenic | 50.0% |
| ATAGGCAACGCGGAGTTTGA+AGG | - | chr5_3:12708001-12708020 | None:intergenic | 50.0% | |
| TACCAGGAAATACCCAGCCT+AGG | - | chr5_3:12708417-12708436 | None:intergenic | 50.0% | |
| GGCTGGGTATTTCCTGGTAT+TGG | + | chr5_3:12708418-12708437 | Msa0799480:CDS | 50.0% | |
| CTTATAAGCGTGTACGTGGC+AGG | + | chr5_3:12708613-12708632 | Msa0799480:CDS | 50.0% | |
| CGGTGAGTCCAAGATTAGTG+AGG | + | chr5_3:12708791-12708810 | Msa0799480:CDS | 50.0% | |
| GGCCAGATATCATGCATGAG+AGG | + | chr5_3:12708812-12708831 | Msa0799480:exon | 50.0% | |
| !! | ATAGTCAGCCATTCTGGCTC+TGG | - | chr5_3:12708892-12708911 | None:intergenic | 50.0% |
| AGGGAGGAAGAGGGATGTTG+TGG | + | chr5_3:12705851-12705870 | Msa0799480:intron | 55.0% | |
| GAATGCGATTGAAGCGCGCA+TGG | + | chr5_3:12706013-12706032 | Msa0799480:CDS | 55.0% | |
| GCCACTTGAAGGTGGTCTCA+AGG | + | chr5_3:12706709-12706728 | Msa0799480:intron | 55.0% | |
| CTACCAGCCAACAAGCTTGC+AGG | + | chr5_3:12707378-12707397 | Msa0799480:intron | 55.0% | |
| !! | AGTCCTGCAAGCTTGTTGGC+TGG | - | chr5_3:12707384-12707403 | None:intergenic | 55.0% |
| AGCCAACAAGCTTGCAGGAC+TGG | + | chr5_3:12707383-12707402 | Msa0799480:intron | 55.0% | |
| CTCCAGTCCTGCAAGCTTGT+TGG | - | chr5_3:12707388-12707407 | None:intergenic | 55.0% | |
| TGCCCTCTACAACCAAGGTG+CGG | - | chr5_3:12707438-12707457 | None:intergenic | 55.0% | |
| TGCCTAGGCTGGGTATTTCC+TGG | + | chr5_3:12708412-12708431 | Msa0799480:CDS | 55.0% | |
| ! | GCAGGTTGACCGAGGTATGA+TGG | + | chr5_3:12708631-12708650 | Msa0799480:intron | 55.0% |
| ! | ATAAGGGCTGGTGCACCTAC+TGG | - | chr5_3:12708757-12708776 | None:intergenic | 55.0% |
| GCGATTGAAGCGCGCATGGT+TGG | + | chr5_3:12706017-12706036 | Msa0799480:intron | 60.0% | |
| ACGCCGCACCTTGGTTGTAG+AGG | + | chr5_3:12707432-12707451 | Msa0799480:intron | 60.0% | |
| CGCCGCACCTTGGTTGTAGA+GGG | + | chr5_3:12707433-12707452 | Msa0799480:intron | 60.0% | |
| ! | TGTACGTGGCAGGTTGACCG+AGG | + | chr5_3:12708623-12708642 | Msa0799480:intron | 60.0% |
| ! | GAAGCGCGCATGGTTGGTGC+TGG | + | chr5_3:12706023-12706042 | Msa0799480:intron | 65.0% |
| ACGTCTGCAACGCCGCACCT+TGG | + | chr5_3:12707423-12707442 | Msa0799480:intron | 65.0% | |
| GAGGTAGGACTTGGCCCTGC+TGG | + | chr5_3:12708361-12708380 | Msa0799480:CDS | 65.0% | |
| GCAGGGGACAGGCTTCCAGT+AGG | + | chr5_3:12708739-12708758 | Msa0799480:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 12704813 | 12709136 | 12704813 | ID=Msa0799480;Name=Msa0799480 |
| chr5_3 | mRNA | 12704813 | 12709136 | 12704813 | ID=Msa0799480-mRNA-1;Parent=Msa0799480;Name=Msa0799480-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.33|0.2|0.9|0.66|0.8|10|306|247 |
| chr5_3 | exon | 12704813 | 12704816 | 12704813 | ID=Msa0799480-mRNA-1:exon:5261;Parent=Msa0799480-mRNA-1 |
| chr5_3 | exon | 12705113 | 12705159 | 12705113 | ID=Msa0799480-mRNA-1:exon:5262;Parent=Msa0799480-mRNA-1 |
| chr5_3 | exon | 12705686 | 12705704 | 12705686 | ID=Msa0799480-mRNA-1:exon:5263;Parent=Msa0799480-mRNA-1 |
| chr5_3 | exon | 12705751 | 12705837 | 12705751 | ID=Msa0799480-mRNA-1:exon:5264;Parent=Msa0799480-mRNA-1 |
| chr5_3 | exon | 12705979 | 12706034 | 12705979 | ID=Msa0799480-mRNA-1:exon:5265;Parent=Msa0799480-mRNA-1 |
| chr5_3 | exon | 12706506 | 12706562 | 12706506 | ID=Msa0799480-mRNA-1:exon:5266;Parent=Msa0799480-mRNA-1 |
| chr5_3 | exon | 12707718 | 12707849 | 12707718 | ID=Msa0799480-mRNA-1:exon:5267;Parent=Msa0799480-mRNA-1 |
| chr5_3 | exon | 12708286 | 12708450 | 12708286 | ID=Msa0799480-mRNA-1:exon:5268;Parent=Msa0799480-mRNA-1 |
| chr5_3 | exon | 12708546 | 12708634 | 12708546 | ID=Msa0799480-mRNA-1:exon:5269;Parent=Msa0799480-mRNA-1 |
| chr5_3 | exon | 12708743 | 12709136 | 12708743 | ID=Msa0799480-mRNA-1:exon:5270;Parent=Msa0799480-mRNA-1 |
| chr5_3 | CDS | 12704813 | 12704816 | 12704813 | ID=Msa0799480-mRNA-1:cds;Parent=Msa0799480-mRNA-1 |
| chr5_3 | CDS | 12705113 | 12705159 | 12705113 | ID=Msa0799480-mRNA-1:cds;Parent=Msa0799480-mRNA-1 |
| chr5_3 | CDS | 12705686 | 12705704 | 12705686 | ID=Msa0799480-mRNA-1:cds;Parent=Msa0799480-mRNA-1 |
| chr5_3 | CDS | 12705751 | 12705837 | 12705751 | ID=Msa0799480-mRNA-1:cds;Parent=Msa0799480-mRNA-1 |
| chr5_3 | CDS | 12705979 | 12706034 | 12705979 | ID=Msa0799480-mRNA-1:cds;Parent=Msa0799480-mRNA-1 |
| chr5_3 | CDS | 12706506 | 12706562 | 12706506 | ID=Msa0799480-mRNA-1:cds;Parent=Msa0799480-mRNA-1 |
| chr5_3 | CDS | 12707718 | 12707849 | 12707718 | ID=Msa0799480-mRNA-1:cds;Parent=Msa0799480-mRNA-1 |
| chr5_3 | CDS | 12708286 | 12708450 | 12708286 | ID=Msa0799480-mRNA-1:cds;Parent=Msa0799480-mRNA-1 |
| chr5_3 | CDS | 12708546 | 12708634 | 12708546 | ID=Msa0799480-mRNA-1:cds;Parent=Msa0799480-mRNA-1 |
| chr5_3 | CDS | 12708743 | 12708830 | 12708743 | ID=Msa0799480-mRNA-1:cds;Parent=Msa0799480-mRNA-1 |
| chr5_3 | three_prime_UTR | 12708831 | 12709136 | 12708831 | ID=Msa0799480-mRNA-1:three_prime_utr;Parent=Msa0799480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
