Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0915540 | GAU48477.1 | 100.000 | 110 | 0 | 0 | 8 | 117 | 1 | 110 | 3.25e-70 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0915540 | sp|Q9M352|RL362_ARATH | 80.909 | 110 | 21 | 0 | 8 | 117 | 1 | 110 | 7.85e-57 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0915540 | 0.815479 | 9.050146e-52 | -8.615850e-47 |
| Msa0003870 | Msa0915540 | 0.836754 | 7.773318e-57 | -8.615850e-47 |
| Msa0027590 | Msa0915540 | 0.829847 | 4.092753e-55 | -8.615850e-47 |
| Msa0032780 | Msa0915540 | 0.806411 | 8.332789e-50 | -8.615850e-47 |
| Msa0049690 | Msa0915540 | 0.805638 | 1.211908e-49 | -8.615850e-47 |
| Msa0072570 | Msa0915540 | 0.815947 | 7.120727e-52 | -8.615850e-47 |
| Msa0075350 | Msa0915540 | 0.826186 | 3.114465e-54 | -8.615850e-47 |
| Msa0087910 | Msa0915540 | 0.803784 | 2.954706e-49 | -8.615850e-47 |
| Msa0100420 | Msa0915540 | 0.814124 | 1.807171e-51 | -8.615850e-47 |
| Msa0114570 | Msa0915540 | 0.813716 | 2.223086e-51 | -8.615850e-47 |
| Msa0604960 | Msa0915540 | 0.832167 | 1.103013e-55 | -8.615850e-47 |
| Msa0622750 | Msa0915540 | 0.802167 | 6.379141e-49 | -8.615850e-47 |
| Msa0625570 | Msa0915540 | 0.803994 | 2.671851e-49 | -8.615850e-47 |
| Msa0653060 | Msa0915540 | 0.803471 | 3.432232e-49 | -8.615850e-47 |
| Msa0705800 | Msa0915540 | 0.923650 | 2.006204e-89 | -8.615850e-47 |
| Msa0712610 | Msa0915540 | 0.855151 | 7.646061e-62 | -8.615850e-47 |
| Msa0729200 | Msa0915540 | 0.827529 | 1.487992e-54 | -8.615850e-47 |
| Msa0766080 | Msa0915540 | 0.805720 | 1.164884e-49 | -8.615850e-47 |
| Msa0769590 | Msa0915540 | 0.812468 | 4.175748e-51 | -8.615850e-47 |
| Msa0781080 | Msa0915540 | 0.829366 | 5.358326e-55 | -8.615850e-47 |
| Msa0788380 | Msa0915540 | 0.869179 | 3.758705e-66 | -8.615850e-47 |
| Msa0792420 | Msa0915540 | 0.853635 | 2.098034e-61 | -8.615850e-47 |
| Msa0799830 | Msa0915540 | 0.804195 | 2.427472e-49 | -8.615850e-47 |
| Msa0802480 | Msa0915540 | 0.826953 | 2.043905e-54 | -8.615850e-47 |
| Msa0822580 | Msa0915540 | 0.863987 | 1.680407e-64 | -8.615850e-47 |
| Msa0123010 | Msa0915540 | 0.828550 | 8.446724e-55 | -8.615850e-47 |
| Msa0138890 | Msa0915540 | 0.848620 | 5.459109e-60 | -8.615850e-47 |
| Msa0146420 | Msa0915540 | 0.808830 | 2.554542e-50 | -8.615850e-47 |
| Msa0191450 | Msa0915540 | 0.854018 | 1.627778e-61 | -8.615850e-47 |
| Msa0191550 | Msa0915540 | 0.829443 | 5.132965e-55 | -8.615850e-47 |
| Msa0192750 | Msa0915540 | 0.811103 | 8.276926e-51 | -8.615850e-47 |
| Msa0194940 | Msa0915540 | 0.802619 | 5.147788e-49 | -8.615850e-47 |
| Msa0210330 | Msa0915540 | 0.867533 | 1.275850e-65 | -8.615850e-47 |
| Msa0210360 | Msa0915540 | 0.855246 | 7.177366e-62 | -8.615850e-47 |
| Msa0229150 | Msa0915540 | 0.809482 | 1.851509e-50 | -8.615850e-47 |
| Msa0369410 | Msa0915540 | 0.816694 | 4.846919e-52 | -8.615850e-47 |
| Msa0376830 | Msa0915540 | 0.823432 | 1.389808e-53 | -8.615850e-47 |
| Msa0463520 | Msa0915540 | 0.832383 | 9.756093e-56 | -8.615850e-47 |
| Msa0471880 | Msa0915540 | 0.845559 | 3.765635e-59 | -8.615850e-47 |
| Msa0481520 | Msa0915540 | 0.856935 | 2.298441e-62 | -8.615850e-47 |
| Msa0481850 | Msa0915540 | 0.819252 | 1.280758e-52 | -8.615850e-47 |
| Msa0257450 | Msa0915540 | 0.819833 | 9.434298e-53 | -8.615850e-47 |
| Msa0297830 | Msa0915540 | 0.876746 | 1.092928e-68 | -8.615850e-47 |
| Msa0298870 | Msa0915540 | 0.816031 | 6.818476e-52 | -8.615850e-47 |
| Msa0301220 | Msa0915540 | 0.842955 | 1.885302e-58 | -8.615850e-47 |
| Msa0315430 | Msa0915540 | 0.800469 | 1.420217e-48 | -8.615850e-47 |
| Msa0335840 | Msa0915540 | 0.888054 | 8.290416e-73 | -8.615850e-47 |
| Msa0517480 | Msa0915540 | 0.834431 | 3.010194e-56 | -8.615850e-47 |
| Msa0540480 | Msa0915540 | 0.841564 | 4.401832e-58 | -8.615850e-47 |
| Msa0546030 | Msa0915540 | 0.826869 | 2.141062e-54 | -8.615850e-47 |
| Msa0550420 | Msa0915540 | 0.813909 | 2.016063e-51 | -8.615850e-47 |
| Msa0584030 | Msa0915540 | 0.854374 | 1.284423e-61 | -8.615850e-47 |
| Msa0591050 | Msa0915540 | 0.804827 | 1.791898e-49 | -8.615850e-47 |
| Msa0596370 | Msa0915540 | 0.819507 | 1.119936e-52 | -8.615850e-47 |
| Msa0861320 | Msa0915540 | 0.836293 | 1.018544e-56 | -8.615850e-47 |
| Msa0876170 | Msa0915540 | 0.862650 | 4.361067e-64 | -8.615850e-47 |
| Msa0888810 | Msa0915540 | 0.874232 | 7.932548e-68 | -8.615850e-47 |
| Msa0915540 | Msa0945480 | 0.812296 | 4.554297e-51 | -8.615850e-47 |
| Msa0915540 | Msa1021120 | 0.875009 | 4.318227e-68 | -8.615850e-47 |
| Msa0915540 | Msa1037290 | 0.854806 | 9.630279e-62 | -8.615850e-47 |
| Msa0915540 | Msa1039520 | 0.803385 | 3.575397e-49 | -8.615850e-47 |
| Msa0915540 | Msa1040160 | 0.849727 | 2.686291e-60 | -8.615850e-47 |
| Msa0915540 | Msa1041680 | 0.832880 | 7.342682e-56 | -8.615850e-47 |
| Msa0915540 | Msa1058700 | 0.839277 | 1.744681e-57 | -8.615850e-47 |
| Msa0915540 | Msa1078870 | 0.811117 | 8.219890e-51 | -8.615850e-47 |
| Msa0915540 | Msa1080350 | 0.829468 | 5.061135e-55 | -8.615850e-47 |
| Msa0915540 | Msa1082170 | 0.863217 | 2.914937e-64 | -8.615850e-47 |
| Msa0915540 | Msa1083370 | 0.848282 | 6.769070e-60 | -8.615850e-47 |
| Msa0915540 | Msa1089220 | 0.800434 | 1.443907e-48 | -8.615850e-47 |
| Msa0915540 | Msa1096900 | 0.827566 | 1.457245e-54 | -8.615850e-47 |
| Msa0915540 | Msa1125860 | 0.816381 | 5.694091e-52 | -8.615850e-47 |
| Msa0915540 | Msa1126060 | 0.813957 | 1.967673e-51 | -8.615850e-47 |
| Msa0915540 | Msa1126520 | 0.849481 | 3.145484e-60 | -8.615850e-47 |
| Msa0915540 | Msa1164150 | 0.853400 | 2.449589e-61 | -8.615850e-47 |
| Msa0915540 | Msa1166570 | 0.833957 | 3.956438e-56 | -8.615850e-47 |
| Msa0915540 | Msa1167540 | 0.808061 | 3.725973e-50 | -8.615850e-47 |
| Msa0915540 | Msa1167550 | 0.805076 | 1.589203e-49 | -8.615850e-47 |
| Msa0915540 | Msa1180000 | 0.802962 | 4.374113e-49 | -8.615850e-47 |
| Msa0915540 | Msa1186030 | 0.829185 | 5.929853e-55 | -8.615850e-47 |
| Msa0915540 | Msa1218170 | 0.861846 | 7.696905e-64 | -8.615850e-47 |
| Msa0915540 | Msa1240270 | 0.836695 | 8.048212e-57 | -8.615850e-47 |
| Msa0915540 | Msa1256840 | 0.837536 | 4.904753e-57 | -8.615850e-47 |
| Msa0915540 | Msa1270640 | 0.802578 | 5.250402e-49 | -8.615850e-47 |
| Msa0915540 | Msa1278070 | 0.803400 | 3.549711e-49 | -8.615850e-47 |
| Msa0915540 | Msa1301640 | 0.849212 | 3.736881e-60 | -8.615850e-47 |
| Msa0915540 | Msa1311400 | 0.854059 | 1.583477e-61 | -8.615850e-47 |
| Msa0915540 | Msa1321790 | 0.824223 | 9.069658e-54 | -8.615850e-47 |
| Msa0915540 | Msa1332250 | 0.830156 | 3.441710e-55 | -8.615850e-47 |
| Msa0915540 | Msa1338190 | 0.834483 | 2.919517e-56 | -8.615850e-47 |
| Msa0915540 | Msa1356790 | 0.852261 | 5.185479e-61 | -8.615850e-47 |
| Msa0915540 | Msa1362790 | 0.833361 | 5.573245e-56 | -8.615850e-47 |
| Msa0915540 | Msa1368920 | 0.854281 | 1.366589e-61 | -8.615850e-47 |
| Msa0915540 | Msa1374240 | 0.859603 | 3.688947e-63 | -8.615850e-47 |
| Msa0915540 | Msa1392590 | 0.881114 | 3.141689e-70 | -8.615850e-47 |
| Msa0915540 | Msa1397100 | 0.849083 | 4.059655e-60 | -8.615850e-47 |
| Msa0915540 | Msa1403910 | 0.863518 | 2.351714e-64 | -8.615850e-47 |
| Msa0915540 | Msa1418770 | 0.890301 | 1.114695e-73 | -8.615850e-47 |
| Msa0915540 | Msa1426120 | 0.820991 | 5.119184e-53 | -8.615850e-47 |
| Msa0915540 | Msa1426490 | 0.823577 | 1.285524e-53 | -8.615850e-47 |
| Msa0915540 | Msa1437280 | 0.808853 | 2.524616e-50 | -8.615850e-47 |
| Msa0915540 | Msa1446410 | 0.801396 | 9.183091e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0915540 | MtrunA17_Chr1g0203071 | 96.396 | 111 | 3 | 1 | 8 | 117 | 1 | 111 | 2.78e-71 | 208 |
| Msa0915540 | MtrunA17_Chr6g0470561 | 98.198 | 111 | 1 | 1 | 8 | 117 | 1 | 111 | 7.98e-71 | 207 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0915540 | AT3G53740.4 | 80.909 | 110 | 21 | 0 | 8 | 117 | 1 | 110 | 7.98e-58 | 174 |
| Msa0915540 | AT3G53740.2 | 80.909 | 110 | 21 | 0 | 8 | 117 | 1 | 110 | 7.98e-58 | 174 |
| Msa0915540 | AT3G53740.3 | 80.909 | 110 | 21 | 0 | 8 | 117 | 1 | 110 | 7.98e-58 | 174 |
| Msa0915540 | AT5G02450.1 | 82.692 | 104 | 18 | 0 | 14 | 117 | 3 | 106 | 4.20e-56 | 170 |
| Msa0915540 | AT2G37600.1 | 83.654 | 104 | 16 | 1 | 15 | 117 | 8 | 111 | 2.52e-55 | 168 |
| Msa0915540 | AT2G37600.2 | 83.654 | 104 | 16 | 1 | 15 | 117 | 8 | 111 | 2.52e-55 | 168 |
| Msa0915540 | AT3G53740.1 | 72.727 | 110 | 21 | 1 | 8 | 117 | 1 | 101 | 1.48e-48 | 150 |
Find 53 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTTCTTGGCACGTTTA+TGG | 0.140365 | 6_2:-31957403 | None:intergenic |
| CTTCTTCTTGGCACGTTTAT+GGG | 0.210182 | 6_2:-31957402 | None:intergenic |
| TACCTGCGGTAGATTGAATT+AGG | 0.234420 | 6_2:-31955236 | None:intergenic |
| TTATTTCATTCCATGTTAAC+TGG | 0.291847 | 6_2:+31957608 | Msa0915540:three_prime_UTR |
| CATCTCCTCACGCTTCTTCT+TGG | 0.294580 | 6_2:-31957414 | None:intergenic |
| CCTTTACGGCTAGAGGGTTT+AGG | 0.305250 | 6_2:-31955508 | None:intergenic |
| TTGCGCAGGGCTGGTGGAGC+AGG | 0.374917 | 6_2:+31957561 | Msa0915540:intron |
| TAATGTTAAGAATGGGTGAT+TGG | 0.398603 | 6_2:+31958008 | Msa0915540:three_prime_UTR |
| AAGAGCAATGTTGGATAGAA+AGG | 0.401929 | 6_2:-31957775 | None:intergenic |
| CTAAACCCTCTAGCCGTAAA+GGG | 0.402747 | 6_2:+31955509 | Msa0915540:CDS |
| TATAGTTGTAATGTTAAGAA+TGG | 0.444359 | 6_2:+31958000 | Msa0915540:intron |
| ATGGGTTCCGAGCTTTCTCT+TGG | 0.449681 | 6_2:-31957384 | None:intergenic |
| GGCGCCGAAGCAGCCAAGTA+CGG | 0.452682 | 6_2:+31955432 | Msa0915540:CDS |
| GAAGAGCAAACCTCATCTTT+CGG | 0.452731 | 6_2:-31957448 | None:intergenic |
| TTATGGCCTATGCCTCAATA+TGG | 0.479513 | 6_2:+31957898 | Msa0915540:three_prime_UTR |
| AACCTCATCCGCGAGGTAGC+TGG | 0.486512 | 6_2:+31957290 | Msa0915540:CDS |
| CCTAAACCCTCTAGCCGTAA+AGG | 0.488599 | 6_2:+31955508 | Msa0915540:CDS |
| AGACCCGTACTTGGCTGCTT+CGG | 0.489391 | 6_2:-31955436 | None:intergenic |
| GCGCCGAAGCAGCCAAGTAC+GGG | 0.490664 | 6_2:+31955433 | Msa0915540:CDS |
| ATCACTGAATTGCTGAAGGT+TGG | 0.491376 | 6_2:+31957335 | Msa0915540:CDS |
| TGAAGGTTGGAAAGGATAAG+AGG | 0.498071 | 6_2:+31957348 | Msa0915540:CDS |
| TGATTTATGAAAAGTACCAT+TGG | 0.498649 | 6_2:+31957717 | Msa0915540:three_prime_UTR |
| GCAAGCGTGTGCACTTTGTA+AGG | 0.505489 | 6_2:+31957267 | Msa0915540:CDS |
| AGCCAGCTACCTCGCGGATG+AGG | 0.509753 | 6_2:-31957292 | None:intergenic |
| TCAGTGATACGCTTCTCATA+AGG | 0.516197 | 6_2:-31957320 | None:intergenic |
| GCACCGCCATATTGAGGCAT+AGG | 0.516372 | 6_2:-31957904 | None:intergenic |
| ATAGTTGTAATGTTAAGAAT+GGG | 0.518361 | 6_2:+31958001 | Msa0915540:intron |
| CAATTTGCACCGCCATATTG+AGG | 0.518900 | 6_2:-31957910 | None:intergenic |
| TCATACCCCTTTACGGCTAG+AGG | 0.525898 | 6_2:-31955515 | None:intergenic |
| AGAGCAATGTTGGATAGAAA+GGG | 0.530735 | 6_2:-31957774 | None:intergenic |
| TAACAACACAAGAGCAATGT+TGG | 0.534703 | 6_2:-31957784 | None:intergenic |
| TGTTGTTACTAAGAAGGAGT+TGG | 0.545489 | 6_2:+31955483 | Msa0915540:CDS |
| GGGTCATGTTGTTACTAAGA+AGG | 0.556387 | 6_2:+31955477 | Msa0915540:CDS |
| TGAATTGCTGAAGGTTGGAA+AGG | 0.563716 | 6_2:+31957340 | Msa0915540:CDS |
| CATTATCATAAGCAATGTCA+AGG | 0.568912 | 6_2:-31957832 | None:intergenic |
| AAAGTTGCCAAGAGAAAGCT+CGG | 0.571574 | 6_2:+31957377 | Msa0915540:CDS |
| AAAACTTGTCCTTCAAAACA+TGG | 0.571599 | 6_2:-31957637 | None:intergenic |
| CATACCCCTTTACGGCTAGA+GGG | 0.582186 | 6_2:-31955514 | None:intergenic |
| ACCCTAATTCAATCTACCGC+AGG | 0.584160 | 6_2:+31955234 | None:intergenic |
| AATGTCAAGGTTGCAGACAA+AGG | 0.597524 | 6_2:-31957819 | None:intergenic |
| CCTCATCTTTCGGAGGACGT+TGG | 0.608911 | 6_2:-31957438 | None:intergenic |
| ATGGGTACATCCAGTTAACA+TGG | 0.610367 | 6_2:-31957618 | None:intergenic |
| GAAGGTTGGAAAGGATAAGA+GGG | 0.613741 | 6_2:+31957349 | Msa0915540:CDS |
| GCGTATCACTGAATTGCTGA+AGG | 0.627654 | 6_2:+31957331 | Msa0915540:CDS |
| CATAAAACAGAATAATCCAA+TGG | 0.631505 | 6_2:-31957733 | None:intergenic |
| AAACTTGTCCTTCAAAACAT+GGG | 0.648003 | 6_2:-31957636 | None:intergenic |
| CCAACGTCCTCCGAAAGATG+AGG | 0.657638 | 6_2:+31957438 | Msa0915540:CDS |
| TAAACCCTCTAGCCGTAAAG+GGG | 0.659101 | 6_2:+31955510 | Msa0915540:CDS |
| TGGCCTATGCCTCAATATGG+CGG | 0.673730 | 6_2:+31957901 | Msa0915540:three_prime_UTR |
| GAGCAAACCTCATCTTTCGG+AGG | 0.683152 | 6_2:-31957445 | None:intergenic |
| GTGCAAAGCCAGCTACCTCG+CGG | 0.704628 | 6_2:-31957298 | None:intergenic |
| ACGTGCCAAGAAGAAGCGTG+AGG | 0.711062 | 6_2:+31957409 | Msa0915540:CDS |
| TGTAAGGAACCTCATCCGCG+AGG | 0.767870 | 6_2:+31957283 | Msa0915540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GGTATGATTTTTTATTTTTA+GGG | + | chr6_2:31955531-31955550 | Msa0915540:intron | 15.0% |
| !!! | TTTTAGGTTTAGTTAATTTT+TGG | + | chr6_2:31955637-31955656 | Msa0915540:intron | 15.0% |
| !!! | TTTAGGTTTAGTTAATTTTT+GGG | + | chr6_2:31955638-31955657 | Msa0915540:intron | 15.0% |
| !!! | TTTTAATTTTCATTTGTGTT+TGG | + | chr6_2:31955685-31955704 | Msa0915540:intron | 15.0% |
| !!! | TTGAAGTTTAGTTAATTTTT+AGG | + | chr6_2:31956020-31956039 | Msa0915540:intron | 15.0% |
| !!! | AGAGTAAAATTAAATTGTTT+TGG | + | chr6_2:31956582-31956601 | Msa0915540:intron | 15.0% |
| !! | TAAGAAAATTAACGAAAATA+TGG | - | chr6_2:31957020-31957039 | None:intergenic | 15.0% |
| !!! | TTTCTTATTTAAAAGACATT+TGG | + | chr6_2:31957033-31957052 | Msa0915540:intron | 15.0% |
| !!! | TTCTTATTTAAAAGACATTT+GGG | + | chr6_2:31957034-31957053 | Msa0915540:intron | 15.0% |
| !!! | TTATTATTAAACTTGTTACT+TGG | + | chr6_2:31957505-31957524 | Msa0915540:intron | 15.0% |
| !! | AAATGAATCTAAGAGAAAAA+TGG | - | chr6_2:31955338-31955357 | None:intergenic | 20.0% |
| !!! | TTCATTTTCAACAATGAATT+TGG | + | chr6_2:31955351-31955370 | Msa0915540:intron | 20.0% |
| !!! | TCATTTTCAACAATGAATTT+GGG | + | chr6_2:31955352-31955371 | Msa0915540:intron | 20.0% |
| !!! | TTTTGACTGATTTATGAATT+TGG | + | chr6_2:31955380-31955399 | Msa0915540:intron | 20.0% |
| !!! | TTTGACTGATTTATGAATTT+GGG | + | chr6_2:31955381-31955400 | Msa0915540:intron | 20.0% |
| !!! | AATTTGGGATTTTTTGATTT+TGG | + | chr6_2:31955396-31955415 | Msa0915540:intron | 20.0% |
| !!! | ATTTGGGATTTTTTGATTTT+GGG | + | chr6_2:31955397-31955416 | Msa0915540:intron | 20.0% |
| !!! | GGGTATGATTTTTTATTTTT+AGG | + | chr6_2:31955530-31955549 | Msa0915540:intron | 20.0% |
| !!! | GATAAATGAGAATCTATTTT+AGG | + | chr6_2:31955621-31955640 | Msa0915540:intron | 20.0% |
| !! | CAATAATCTGAGTAAATTAA+TGG | + | chr6_2:31955745-31955764 | Msa0915540:intron | 20.0% |
| !! | TGGTTAATGTTTGAATTTAT+TGG | + | chr6_2:31956153-31956172 | Msa0915540:intron | 20.0% |
| !!! | TTTGATGTTTAGTTAACTTT+TGG | + | chr6_2:31956195-31956214 | Msa0915540:intron | 20.0% |
| !!! | TTGATGTTTAGTTAACTTTT+GGG | + | chr6_2:31956196-31956215 | Msa0915540:intron | 20.0% |
| !!! | AGTTTAGTTTTAAGTTTTGT+TGG | + | chr6_2:31956383-31956402 | Msa0915540:intron | 20.0% |
| !!! | ATTGTTCATTTTTCATCTAA+TGG | - | chr6_2:31956462-31956481 | None:intergenic | 20.0% |
| !!! | GAGGATTTTTTTTTATAGTT+AGG | + | chr6_2:31956483-31956502 | Msa0915540:intron | 20.0% |
| !!! | TTTACAATAACATGGAATTT+TGG | + | chr6_2:31956816-31956835 | Msa0915540:intron | 20.0% |
| !! | ATAGTACTATGTAATATATC+TGG | + | chr6_2:31957065-31957084 | Msa0915540:intron | 20.0% |
| !! | TAATGAAATTGTTGATATTC+TGG | + | chr6_2:31957177-31957196 | Msa0915540:intron | 20.0% |
| !! | AATGAAATTGTTGATATTCT+GGG | + | chr6_2:31957178-31957197 | Msa0915540:intron | 20.0% |
| !! | AGTTTAATAATAAAACACCT+GGG | - | chr6_2:31957498-31957517 | None:intergenic | 20.0% |
| !! | AAGTTTAATAATAAAACACC+TGG | - | chr6_2:31957499-31957518 | None:intergenic | 20.0% |
| !!! | AAACAAAGCCTTATTTTTTA+TGG | + | chr6_2:31957855-31957874 | Msa0915540:three_prime_UTR | 20.0% |
| !! | CATTGAAACCATAAAAAATA+AGG | - | chr6_2:31957866-31957885 | None:intergenic | 20.0% |
| !! | TATAGTTGTAATGTTAAGAA+TGG | + | chr6_2:31958000-31958019 | Msa0915540:intron | 20.0% |
| !! | ATAGTTGTAATGTTAAGAAT+GGG | + | chr6_2:31958001-31958020 | Msa0915540:intron | 20.0% |
| ! | ATGAAATTGATTGAAGGAAT+TGG | - | chr6_2:31955293-31955312 | None:intergenic | 25.0% |
| !! | ATGATGATGAAATTGATTGA+AGG | - | chr6_2:31955299-31955318 | None:intergenic | 25.0% |
| !!! | ATTTTTTGATTTTGGGTTTC+AGG | + | chr6_2:31955404-31955423 | Msa0915540:intron | 25.0% |
| ! | TAAAAAATCATACCCCTTTA+CGG | - | chr6_2:31955525-31955544 | None:intergenic | 25.0% |
| !! | GTTATTGTTCATTTTGTGTT+TGG | + | chr6_2:31955599-31955618 | Msa0915540:intron | 25.0% |
| !!! | TTAATTTTTGGGTATAGTGA+TGG | + | chr6_2:31955649-31955668 | Msa0915540:intron | 25.0% |
| ! | GTTATTAGTTGTAATAGTGA+AGG | + | chr6_2:31956278-31956297 | Msa0915540:intron | 25.0% |
| ! | AGATGAAAAATGAACAATTG+AGG | + | chr6_2:31956464-31956483 | Msa0915540:intron | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | - | chr6_2:31956509-31956528 | None:intergenic | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | - | chr6_2:31956510-31956529 | None:intergenic | 25.0% |
| ! | ACATCAAATCACATAACAAA+TGG | - | chr6_2:31956768-31956787 | None:intergenic | 25.0% |
| ! | AGTTTCAATTGAAATCCAAA+GGG | - | chr6_2:31956857-31956876 | None:intergenic | 25.0% |
| ! | TAGTTTCAATTGAAATCCAA+AGG | - | chr6_2:31956858-31956877 | None:intergenic | 25.0% |
| !! | TGAAACTATCTTGTGATTTT+TGG | + | chr6_2:31956870-31956889 | Msa0915540:intron | 25.0% |
| ! | TAACTCAAATACATTCAATG+AGG | - | chr6_2:31956958-31956977 | None:intergenic | 25.0% |
| !! | ATATATCTGGAGTCAAAATA+TGG | + | chr6_2:31957078-31957097 | Msa0915540:intron | 25.0% |
| ! | TTATCATTGATACTGTTCTT+TGG | + | chr6_2:31957206-31957225 | Msa0915540:intron | 25.0% |
| !!! | TTTTGTTTATTATACATCCC+AGG | + | chr6_2:31957478-31957497 | Msa0915540:intron | 25.0% |
| !!! | TATCTTTTTAATTTTGCGCA+GGG | + | chr6_2:31957548-31957567 | Msa0915540:intron | 25.0% |
| ! | TTATTTCATTCCATGTTAAC+TGG | + | chr6_2:31957608-31957627 | Msa0915540:three_prime_UTR | 25.0% |
| !!! | TGATTTATGAAAAGTACCAT+TGG | + | chr6_2:31957717-31957736 | Msa0915540:three_prime_UTR | 25.0% |
| ! | CATAAAACAGAATAATCCAA+TGG | - | chr6_2:31957736-31957755 | None:intergenic | 25.0% |
| ATCTAAGAGAAAAATGGTAG+AGG | - | chr6_2:31955332-31955351 | None:intergenic | 30.0% | |
| ! | TCTTTTTGTTGGATTGAACA+AGG | + | chr6_2:31955456-31955475 | Msa0915540:CDS | 30.0% |
| ! | CTTTTTGTTGGATTGAACAA+GGG | + | chr6_2:31955457-31955476 | Msa0915540:CDS | 30.0% |
| TTAGATATTAGTGATGCGTT+TGG | + | chr6_2:31955555-31955574 | Msa0915540:intron | 30.0% | |
| !!! | GTTTTTTATTGTCATAGCGA+AGG | + | chr6_2:31956097-31956116 | Msa0915540:intron | 30.0% |
| !!! | GTGACTGTTTGTTTTGATTT+TGG | + | chr6_2:31956133-31956152 | Msa0915540:intron | 30.0% |
| !!! | AGTCTTTATTTTTTGCCCTT+TGG | + | chr6_2:31956839-31956858 | Msa0915540:intron | 30.0% |
| !! | CTATCTTGTGATTTTTGGAA+TGG | + | chr6_2:31956875-31956894 | Msa0915540:intron | 30.0% |
| ! | AAGCTGTTGCATTTTCATAT+AGG | - | chr6_2:31956983-31957002 | None:intergenic | 30.0% |
| ATATGAAAATGCAACAGCTT+TGG | + | chr6_2:31956983-31957002 | Msa0915540:intron | 30.0% | |
| !!! | CTATCTTTTTAATTTTGCGC+AGG | + | chr6_2:31957547-31957566 | Msa0915540:intron | 30.0% |
| AAACTTGTCCTTCAAAACAT+GGG | - | chr6_2:31957639-31957658 | None:intergenic | 30.0% | |
| AAAACTTGTCCTTCAAAACA+TGG | - | chr6_2:31957640-31957659 | None:intergenic | 30.0% | |
| CATTATCATAAGCAATGTCA+AGG | - | chr6_2:31957835-31957854 | None:intergenic | 30.0% | |
| ! | CAATGCTTTTGTAGTGATTA+TGG | + | chr6_2:31957881-31957900 | Msa0915540:three_prime_UTR | 30.0% |
| TAATGTTAAGAATGGGTGAT+TGG | + | chr6_2:31958008-31958027 | Msa0915540:three_prime_UTR | 30.0% | |
| AGAGAGAGAAAATTAGGGTT+TGG | - | chr6_2:31955264-31955283 | None:intergenic | 35.0% | |
| AGAGGAGAGAGAGAAAATTA+GGG | - | chr6_2:31955269-31955288 | None:intergenic | 35.0% | |
| AAGAGGAGAGAGAGAAAATT+AGG | - | chr6_2:31955270-31955289 | None:intergenic | 35.0% | |
| TTGATTGAAGGAATTGGAAG+AGG | - | chr6_2:31955287-31955306 | None:intergenic | 35.0% | |
| !!! | GATTTTGGGTTTCAGGAAAA+TGG | + | chr6_2:31955411-31955430 | Msa0915540:intron | 35.0% |
| TGTTGTTACTAAGAAGGAGT+TGG | + | chr6_2:31955483-31955502 | Msa0915540:CDS | 35.0% | |
| TTGTCTGTTGAGCTAATCTT+TGG | + | chr6_2:31955798-31955817 | Msa0915540:intron | 35.0% | |
| TGTCTGTTGAGCTAATCTTT+GGG | + | chr6_2:31955799-31955818 | Msa0915540:intron | 35.0% | |
| GTAAACCATTTGCATTGCAA+CGG | - | chr6_2:31956437-31956456 | None:intergenic | 35.0% | |
| ! | TTTTATAGTTAGGCCCTGTT+TGG | + | chr6_2:31956493-31956512 | Msa0915540:intron | 35.0% |
| TACTCAACAAGATCGTTTGT+AGG | - | chr6_2:31956715-31956734 | None:intergenic | 35.0% | |
| TCAAATAAGCTCATCCAAAC+AGG | + | chr6_2:31956742-31956761 | Msa0915540:intron | 35.0% | |
| ! | GGCACTGTTTTACAATAACA+TGG | + | chr6_2:31956808-31956827 | Msa0915540:intron | 35.0% |
| ! | TCTGTTTTATGCTAGAAACG+AGG | + | chr6_2:31957745-31957764 | Msa0915540:three_prime_UTR | 35.0% |
| AGAGCAATGTTGGATAGAAA+GGG | - | chr6_2:31957777-31957796 | None:intergenic | 35.0% | |
| AAGAGCAATGTTGGATAGAA+AGG | - | chr6_2:31957778-31957797 | None:intergenic | 35.0% | |
| TAACAACACAAGAGCAATGT+TGG | - | chr6_2:31957787-31957806 | None:intergenic | 35.0% | |
| ! | ATTAGGGTTTGGTTTACCTG+CGG | - | chr6_2:31955253-31955272 | None:intergenic | 40.0% |
| GGGTCATGTTGTTACTAAGA+AGG | + | chr6_2:31955477-31955496 | Msa0915540:CDS | 40.0% | |
| ! | GTTGAGCTAATCTTTGGGTT+CGG | + | chr6_2:31955804-31955823 | Msa0915540:intron | 40.0% |
| GAGATTAGTGATGCATTTGC+TGG | + | chr6_2:31956223-31956242 | Msa0915540:intron | 40.0% | |
| CATTTCCGTTGCAATGCAAA+TGG | + | chr6_2:31956429-31956448 | Msa0915540:intron | 40.0% | |
| !! | GCTGTTTTCATGAGCTGTTT+TGG | + | chr6_2:31956617-31956636 | Msa0915540:intron | 40.0% |
| GATCGTTTGTAGGACTGTTT+GGG | - | chr6_2:31956705-31956724 | None:intergenic | 40.0% | |
| AGATCGTTTGTAGGACTGTT+TGG | - | chr6_2:31956706-31956725 | None:intergenic | 40.0% | |
| CACATAACAAATGGCCTGTT+TGG | - | chr6_2:31956759-31956778 | None:intergenic | 40.0% | |
| ! | TGAGTTGAGTTGTAGAATGC+AGG | + | chr6_2:31956787-31956806 | Msa0915540:intron | 40.0% |
| TTGGTCCTAGTCCTAATATG+CGG | + | chr6_2:31957225-31957244 | Msa0915540:intron | 40.0% | |
| !!! | GCTTGCTAGTTTTCTGTTCA+AGG | - | chr6_2:31957253-31957272 | None:intergenic | 40.0% |
| TCAGTGATACGCTTCTCATA+AGG | - | chr6_2:31957323-31957342 | None:intergenic | 40.0% | |
| ATCACTGAATTGCTGAAGGT+TGG | + | chr6_2:31957335-31957354 | Msa0915540:CDS | 40.0% | |
| TGAATTGCTGAAGGTTGGAA+AGG | + | chr6_2:31957340-31957359 | Msa0915540:CDS | 40.0% | |
| TGAAGGTTGGAAAGGATAAG+AGG | + | chr6_2:31957348-31957367 | Msa0915540:CDS | 40.0% | |
| GAAGGTTGGAAAGGATAAGA+GGG | + | chr6_2:31957349-31957368 | Msa0915540:CDS | 40.0% | |
| AAAGTTGCCAAGAGAAAGCT+CGG | + | chr6_2:31957377-31957396 | Msa0915540:CDS | 40.0% | |
| CTTCTTCTTGGCACGTTTAT+GGG | - | chr6_2:31957405-31957424 | None:intergenic | 40.0% | |
| GAAGAGCAAACCTCATCTTT+CGG | - | chr6_2:31957451-31957470 | None:intergenic | 40.0% | |
| !!! | TTTTTAATTTTGCGCAGGGC+TGG | + | chr6_2:31957552-31957571 | Msa0915540:intron | 40.0% |
| ATGGGTACATCCAGTTAACA+TGG | - | chr6_2:31957621-31957640 | None:intergenic | 40.0% | |
| !! | TGGATGTACCCATGTTTTGA+AGG | + | chr6_2:31957628-31957647 | Msa0915540:three_prime_UTR | 40.0% |
| AATGTCAAGGTTGCAGACAA+AGG | - | chr6_2:31957822-31957841 | None:intergenic | 40.0% | |
| TTATGGCCTATGCCTCAATA+TGG | + | chr6_2:31957898-31957917 | Msa0915540:three_prime_UTR | 40.0% | |
| CCAACAAAAAGACCCGTACT+TGG | - | chr6_2:31955448-31955467 | None:intergenic | 45.0% | |
| ! | CCAAGTACGGGTCTTTTTGT+TGG | + | chr6_2:31955445-31955464 | Msa0915540:CDS | 45.0% |
| CTAAACCCTCTAGCCGTAAA+GGG | + | chr6_2:31955509-31955528 | Msa0915540:CDS | 45.0% | |
| TAAACCCTCTAGCCGTAAAG+GGG | + | chr6_2:31955510-31955529 | Msa0915540:CDS | 45.0% | |
| !! | TGTTCAAGGCACCGCATATT+AGG | - | chr6_2:31957239-31957258 | None:intergenic | 45.0% |
| GCGTATCACTGAATTGCTGA+AGG | + | chr6_2:31957331-31957350 | Msa0915540:CDS | 45.0% | |
| GCTTCTTCTTGGCACGTTTA+TGG | - | chr6_2:31957406-31957425 | None:intergenic | 45.0% | |
| CAATTTGCACCGCCATATTG+AGG | - | chr6_2:31957913-31957932 | None:intergenic | 45.0% | |
| CCTTTACGGCTAGAGGGTTT+AGG | - | chr6_2:31955511-31955530 | None:intergenic | 50.0% | |
| CCTAAACCCTCTAGCCGTAA+AGG | + | chr6_2:31955508-31955527 | Msa0915540:CDS | 50.0% | |
| CATACCCCTTTACGGCTAGA+GGG | - | chr6_2:31955517-31955536 | None:intergenic | 50.0% | |
| TCATACCCCTTTACGGCTAG+AGG | - | chr6_2:31955518-31955537 | None:intergenic | 50.0% | |
| ! | AGGCACCGCATATTAGGACT+AGG | - | chr6_2:31957233-31957252 | None:intergenic | 50.0% |
| GCAAGCGTGTGCACTTTGTA+AGG | + | chr6_2:31957267-31957286 | Msa0915540:CDS | 50.0% | |
| ATGGGTTCCGAGCTTTCTCT+TGG | - | chr6_2:31957387-31957406 | None:intergenic | 50.0% | |
| CATCTCCTCACGCTTCTTCT+TGG | - | chr6_2:31957417-31957436 | None:intergenic | 50.0% | |
| GAGCAAACCTCATCTTTCGG+AGG | - | chr6_2:31957448-31957467 | None:intergenic | 50.0% | |
| ! | TTAATTTTGCGCAGGGCTGG+TGG | + | chr6_2:31957555-31957574 | Msa0915540:intron | 50.0% |
| TGGCCTATGCCTCAATATGG+CGG | + | chr6_2:31957901-31957920 | Msa0915540:three_prime_UTR | 50.0% | |
| AGACCCGTACTTGGCTGCTT+CGG | - | chr6_2:31955439-31955458 | None:intergenic | 55.0% | |
| TGTAAGGAACCTCATCCGCG+AGG | + | chr6_2:31957283-31957302 | Msa0915540:CDS | 55.0% | |
| ! | ACGTGCCAAGAAGAAGCGTG+AGG | + | chr6_2:31957409-31957428 | Msa0915540:CDS | 55.0% |
| CCTCATCTTTCGGAGGACGT+TGG | - | chr6_2:31957441-31957460 | None:intergenic | 55.0% | |
| CCAACGTCCTCCGAAAGATG+AGG | + | chr6_2:31957438-31957457 | Msa0915540:CDS | 55.0% | |
| GCACCGCCATATTGAGGCAT+AGG | - | chr6_2:31957907-31957926 | None:intergenic | 55.0% | |
| AACCTCATCCGCGAGGTAGC+TGG | + | chr6_2:31957290-31957309 | Msa0915540:CDS | 60.0% | |
| GTGCAAAGCCAGCTACCTCG+CGG | - | chr6_2:31957301-31957320 | None:intergenic | 60.0% | |
| ! | GGCGCCGAAGCAGCCAAGTA+CGG | + | chr6_2:31955432-31955451 | Msa0915540:CDS | 65.0% |
| GCGCCGAAGCAGCCAAGTAC+GGG | + | chr6_2:31955433-31955452 | Msa0915540:CDS | 65.0% | |
| AGCCAGCTACCTCGCGGATG+AGG | - | chr6_2:31957295-31957314 | None:intergenic | 65.0% | |
| ! | TTGCGCAGGGCTGGTGGAGC+AGG | + | chr6_2:31957561-31957580 | Msa0915540:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 31955239 | 31958061 | 31955239 | ID=Msa0915540;Name=Msa0915540 |
| chr6_2 | mRNA | 31955239 | 31958061 | 31955239 | ID=Msa0915540-mRNA-1;Parent=Msa0915540;Name=Msa0915540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|1|1|0.5|0.2|5|428|117 |
| chr6_2 | exon | 31955239 | 31955255 | 31955239 | ID=Msa0915540-mRNA-1:exon:5725;Parent=Msa0915540-mRNA-1 |
| chr6_2 | exon | 31955426 | 31955531 | 31955426 | ID=Msa0915540-mRNA-1:exon:5726;Parent=Msa0915540-mRNA-1 |
| chr6_2 | exon | 31957260 | 31957459 | 31957260 | ID=Msa0915540-mRNA-1:exon:5727;Parent=Msa0915540-mRNA-1 |
| chr6_2 | exon | 31957569 | 31957970 | 31957569 | ID=Msa0915540-mRNA-1:exon:5728;Parent=Msa0915540-mRNA-1 |
| chr6_2 | exon | 31958005 | 31958061 | 31958005 | ID=Msa0915540-mRNA-1:exon:5729;Parent=Msa0915540-mRNA-1 |
| chr6_2 | CDS | 31955239 | 31955255 | 31955239 | ID=Msa0915540-mRNA-1:cds;Parent=Msa0915540-mRNA-1 |
| chr6_2 | CDS | 31955426 | 31955531 | 31955426 | ID=Msa0915540-mRNA-1:cds;Parent=Msa0915540-mRNA-1 |
| chr6_2 | CDS | 31957260 | 31957459 | 31957260 | ID=Msa0915540-mRNA-1:cds;Parent=Msa0915540-mRNA-1 |
| chr6_2 | CDS | 31957569 | 31957599 | 31957569 | ID=Msa0915540-mRNA-1:cds;Parent=Msa0915540-mRNA-1 |
| chr6_2 | three_prime_UTR | 31957600 | 31957970 | 31957600 | ID=Msa0915540-mRNA-1:three_prime_utr;Parent=Msa0915540-mRNA-1 |
| chr6_2 | three_prime_UTR | 31958005 | 31958061 | 31958005 | ID=Msa0915540-mRNA-1:three_prime_utr;Parent=Msa0915540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
