Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819480 | XP_003616838.3 | 95.349 | 559 | 26 | 0 | 1 | 559 | 1 | 559 | 0.0 | 1079 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819480 | sp|Q9M219|MTEFH_ARATH | 25.800 | 531 | 368 | 11 | 42 | 558 | 9 | 527 | 1.12e-45 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819480 | A0A396HVA9 | 95.349 | 559 | 26 | 0 | 1 | 559 | 33 | 591 | 0.0 | 1079 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0819480 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033950 | Msa0819480 | 0.807378 | 5.205331e-50 | -8.615850e-47 |
| Msa0605000 | Msa0819480 | 0.801711 | 7.913272e-49 | -8.615850e-47 |
| Msa0685140 | Msa0819480 | 0.808772 | 2.627664e-50 | -8.615850e-47 |
| Msa0715650 | Msa0819480 | 0.804424 | 2.174646e-49 | -8.615850e-47 |
| Msa0738990 | Msa0819480 | 0.811975 | 5.349797e-51 | -8.615850e-47 |
| Msa0772480 | Msa0819480 | 0.801161 | 1.025775e-48 | -8.615850e-47 |
| Msa0795920 | Msa0819480 | 0.801932 | 7.128723e-49 | -8.615850e-47 |
| Msa0798440 | Msa0819480 | 0.801209 | 1.003222e-48 | -8.615850e-47 |
| Msa0819480 | Msa0825590 | 0.811560 | 6.587561e-51 | -8.615850e-47 |
| Msa0819480 | Msa0859380 | 0.843279 | 1.544563e-58 | -8.615850e-47 |
| Msa0819480 | Msa0945440 | 0.808569 | 2.903675e-50 | -8.615850e-47 |
| Msa0819480 | Msa1009820 | 0.812594 | 3.918510e-51 | -8.615850e-47 |
| Msa0819480 | Msa1051200 | 0.803246 | 3.820448e-49 | -8.615850e-47 |
| Msa0819480 | Msa1224810 | 0.801556 | 8.515869e-49 | -8.615850e-47 |
| Msa0819480 | Msa1400220 | 0.803838 | 2.879042e-49 | -8.615850e-47 |
| Msa0819480 | Msa1411750 | 0.809751 | 1.621152e-50 | -8.615850e-47 |
| Msa0819480 | Msa1427830 | 0.802495 | 5.460851e-49 | -8.615850e-47 |
| Msa0819480 | Msa1437170 | 0.847289 | 1.270711e-59 | -8.615850e-47 |
| Msa0446580 | Msa0819480 | 0.808945 | 2.413715e-50 | -8.615850e-47 |
| Msa0279220 | Msa0819480 | 0.801724 | 7.866192e-49 | -8.615850e-47 |
| Msa0486920 | Msa0819480 | 0.806174 | 9.350817e-50 | -8.615850e-47 |
| Msa0542090 | Msa0819480 | 0.813898 | 2.027093e-51 | -8.615850e-47 |
| Msa0542130 | Msa0819480 | 0.812406 | 4.308045e-51 | -8.615850e-47 |
| Msa0580420 | Msa0819480 | 0.810942 | 8.966926e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819480 | MtrunA17_Chr5g0438661 | 95.349 | 559 | 26 | 0 | 1 | 559 | 33 | 591 | 0.0 | 1079 |
| Msa0819480 | MtrunA17_Chr8g0335121 | 25.947 | 528 | 364 | 12 | 48 | 558 | 18 | 535 | 1.77e-46 | 172 |
| Msa0819480 | MtrunA17_Chr7g0258521 | 38.189 | 254 | 132 | 7 | 64 | 309 | 41 | 277 | 8.99e-40 | 152 |
| Msa0819480 | MtrunA17_Chr7g0258521 | 37.349 | 166 | 102 | 2 | 390 | 554 | 274 | 438 | 2.39e-25 | 109 |
| Msa0819480 | MtrunA17_Chr7g0249711 | 24.764 | 529 | 371 | 12 | 51 | 559 | 35 | 556 | 1.06e-39 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0819480 | AT4G19650.2 | 47.154 | 492 | 258 | 2 | 68 | 559 | 79 | 568 | 2.34e-157 | 464 |
| Msa0819480 | AT4G19650.1 | 44.939 | 494 | 268 | 3 | 68 | 559 | 60 | 551 | 7.61e-144 | 429 |
| Msa0819480 | AT5G45113.1 | 43.702 | 389 | 213 | 2 | 168 | 554 | 1 | 385 | 6.91e-105 | 323 |
| Msa0819480 | AT5G06810.1 | 34.585 | 506 | 329 | 2 | 53 | 558 | 55 | 558 | 7.55e-95 | 303 |
| Msa0819480 | AT5G06811.1 | 34.229 | 558 | 347 | 7 | 15 | 558 | 3 | 554 | 8.39e-94 | 300 |
| Msa0819480 | AT3G60400.1 | 25.800 | 531 | 368 | 11 | 42 | 558 | 9 | 527 | 1.14e-46 | 173 |
Find 95 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAGAAAGAGCGGGAATT+TGG | 0.207920 | 5_3:+55958893 | None:intergenic |
| TTGAGCAAACATTCGATAAA+AGG | 0.208563 | 5_3:-55957953 | Msa0819480:CDS |
| TTGTGACCCGCTTATTAAAT+TGG | 0.211062 | 5_3:-55957801 | Msa0819480:CDS |
| AAAAGGTTCAAATTCGTTAA+TGG | 0.216359 | 5_3:+55958666 | None:intergenic |
| ATTTCAAAATTATGAAGATT+TGG | 0.252419 | 5_3:-55958446 | Msa0819480:CDS |
| GGTGCAAGAAATTGGGGTTT+TGG | 0.263423 | 5_3:+55958974 | None:intergenic |
| CTTGCTGAAACTAGGGTATA+TGG | 0.266036 | 5_3:-55957765 | Msa0819480:CDS |
| TTTGAATTACATTTCTCTTC+AGG | 0.267697 | 5_3:+55957597 | None:intergenic |
| ATTCTGCATAAATCAGCTTT+TGG | 0.277612 | 5_3:+55957899 | None:intergenic |
| CTTGATTGGTTGAAAAGAAT+TGG | 0.282428 | 5_3:-55958337 | Msa0819480:CDS |
| CTCTTCAGGATTAGAATCTT+AGG | 0.284996 | 5_3:+55957611 | None:intergenic |
| TTTCAAAATTATGAAGATTT+GGG | 0.292284 | 5_3:-55958445 | Msa0819480:CDS |
| GGGGTGTGGAATTAGGGTTT+TGG | 0.300249 | 5_3:+55958995 | None:intergenic |
| GAATTGGGATTGAGAGTATA+TGG | 0.303345 | 5_3:-55958321 | Msa0819480:CDS |
| TCCATTGGAGCTTATTAGTT+TGG | 0.304432 | 5_3:-55957864 | Msa0819480:CDS |
| GCATAGTTCTGTGGTTCTGC+TGG | 0.306000 | 5_3:-55955907 | Msa0819480:CDS |
| AAAGGTTCAAATTCGTTAAT+GGG | 0.316048 | 5_3:+55958667 | None:intergenic |
| AGGAATTAATCACACGGAAT+TGG | 0.320142 | 5_3:-55958632 | Msa0819480:CDS |
| ATCGTCAGGGATGTTGATTT+TGG | 0.327979 | 5_3:+55958732 | None:intergenic |
| AATTGTTGTTGGAAGGTTTA+GGG | 0.328135 | 5_3:-55958174 | Msa0819480:CDS |
| TGGAGAAAGAGCGGGAATTT+GGG | 0.332233 | 5_3:+55958894 | None:intergenic |
| TGTTTGTTGTCCTTTGCTTT+TGG | 0.333098 | 5_3:-55958392 | Msa0819480:CDS |
| AGAGCGGTTTGTAAGGAGTT+AGG | 0.349298 | 5_3:-55957926 | Msa0819480:CDS |
| AAACCTTCCAACAACAATTT+CGG | 0.350727 | 5_3:+55958178 | None:intergenic |
| AGTTTGTTGTTGTTCTTGAT+TGG | 0.351137 | 5_3:-55958351 | Msa0819480:CDS |
| TTTAATAAGCGGGTCACAAT+AGG | 0.351904 | 5_3:+55957805 | None:intergenic |
| TTTCATGTATTGTGTTATCA+TGG | 0.353729 | 5_3:-55958550 | Msa0819480:CDS |
| AAATTGTTGTTGGAAGGTTT+AGG | 0.357978 | 5_3:-55958175 | Msa0819480:CDS |
| AGGGAGAGGTGATCAGTTAC+AGG | 0.358936 | 5_3:-55957702 | Msa0819480:CDS |
| TTGATTGGTTGAAAAGAATT+GGG | 0.361761 | 5_3:-55958336 | Msa0819480:CDS |
| AAATGGAAGAAGATGGGTTT+TGG | 0.369970 | 5_3:+55958953 | None:intergenic |
| CAAAGAAAATAACAACCTTT+AGG | 0.370775 | 5_3:+55958598 | None:intergenic |
| TATCTCACAAGACATTCTAT+TGG | 0.371889 | 5_3:+55957539 | None:intergenic |
| GAAGCAGTAAAATTGTTTCC+AGG | 0.374900 | 5_3:-55957722 | Msa0819480:CDS |
| CTGCCTCGTAGAAGCTGGTT+TGG | 0.378167 | 5_3:-55957669 | Msa0819480:CDS |
| TGGGTATGGAAATGGAGTTT+TGG | 0.409236 | 5_3:-55958476 | Msa0819480:CDS |
| TTAGGGTTGAAGAGAAAGAT+TGG | 0.418482 | 5_3:+55959027 | None:intergenic |
| ATCTCACAAGACATTCTATT+GGG | 0.431195 | 5_3:+55957540 | None:intergenic |
| AGGTTATAGAGCGGTTTGTA+AGG | 0.431374 | 5_3:-55957933 | Msa0819480:CDS |
| TTGTAAGAAATGGAAGAAGA+TGG | 0.432773 | 5_3:+55958946 | None:intergenic |
| CGGCTTTCTTGCTGAAACTA+GGG | 0.439594 | 5_3:-55957772 | Msa0819480:CDS |
| GCTTATTAAATTGGAGAAAA+CGG | 0.440222 | 5_3:-55957792 | Msa0819480:CDS |
| CAAATAGAGCACGTTGTGCT+TGG | 0.446553 | 5_3:+55958842 | None:intergenic |
| CATAGTTCTGTGGTTCTGCT+GGG | 0.448307 | 5_3:-55955906 | Msa0819480:CDS |
| TGATCAGTTACAGGAGAGAT+TGG | 0.453405 | 5_3:-55957693 | Msa0819480:CDS |
| TTCATGTATTGTGTTATCAT+GGG | 0.455291 | 5_3:-55958549 | Msa0819480:CDS |
| TGTAAGAAATGGAAGAAGAT+GGG | 0.462766 | 5_3:+55958947 | None:intergenic |
| GGCGGATCCGAAATTGTTGT+TGG | 0.463269 | 5_3:-55958185 | Msa0819480:CDS |
| TTAGGTCGGTTTATTAAGTC+CGG | 0.474733 | 5_3:-55958133 | Msa0819480:CDS |
| ACGGCTTTCTTGCTGAAACT+AGG | 0.474798 | 5_3:-55957773 | Msa0819480:CDS |
| TAGGGTTGAAGAGAAAGATT+GGG | 0.477121 | 5_3:+55959028 | None:intergenic |
| ATCTTCGCCATTCGATTCCT+CGG | 0.482527 | 5_3:+55958523 | None:intergenic |
| CTAGTTCAAGCACTTATAGC+TGG | 0.484679 | 5_3:-55958282 | Msa0819480:CDS |
| TTCAATGTATGAGTGGTTGA+AGG | 0.494343 | 5_3:-55957471 | Msa0819480:CDS |
| TTGGACTGCCTCGTAGAAGC+TGG | 0.500999 | 5_3:-55957674 | Msa0819480:CDS |
| GTAAATTTGTGGAGAAAGAG+CGG | 0.503549 | 5_3:+55958885 | None:intergenic |
| TCGGCTGTGGTGATTTATGC+GGG | 0.503882 | 5_3:-55955878 | Msa0819480:CDS |
| CTTCTAAACAGAAACATAAG+AGG | 0.503889 | 5_3:-55957841 | Msa0819480:CDS |
| TGTATGAGTGGTTGAAGGAA+AGG | 0.504426 | 5_3:-55957466 | Msa0819480:CDS |
| TATGGAAAACTCTGAGGAGA+TGG | 0.511741 | 5_3:-55957747 | Msa0819480:CDS |
| GTAAAATTGTTTCCAGGGAG+AGG | 0.518160 | 5_3:-55957716 | Msa0819480:CDS |
| GATCCGAAATTGTTGTTGGA+AGG | 0.518545 | 5_3:-55958181 | Msa0819480:CDS |
| CTCGGCTGTGGTGATTTATG+CGG | 0.523297 | 5_3:-55955879 | Msa0819480:CDS |
| GCGCGTTTGATGTAAATTTG+TGG | 0.525723 | 5_3:+55958874 | None:intergenic |
| GAGTTCGAGGCAGGAGTGCA+AGG | 0.534215 | 5_3:-55956469 | Msa0819480:intron |
| TCATGTATTGTGTTATCATG+GGG | 0.535058 | 5_3:-55958548 | Msa0819480:CDS |
| AAGCAGTAAAATTGTTTCCA+GGG | 0.543083 | 5_3:-55957721 | Msa0819480:CDS |
| ACATATGTATGATTTGTTCA+AGG | 0.544052 | 5_3:-55958206 | Msa0819480:CDS |
| ATGAGGAAATTGATGAAATG+TGG | 0.545861 | 5_3:+55958757 | None:intergenic |
| GCCAAACTAATAAGCTCCAA+TGG | 0.546201 | 5_3:+55957863 | None:intergenic |
| AATCATAAACGATGATCCAT+TGG | 0.546725 | 5_3:-55957879 | Msa0819480:CDS |
| ATATGAAACTATGGTACTCA+AGG | 0.555816 | 5_3:+55957421 | None:intergenic |
| AGAAAGAGCGGGAATTTGGG+TGG | 0.556121 | 5_3:+55958897 | None:intergenic |
| TTGTAGCACTGCGATTAGAA+TGG | 0.562098 | 5_3:-55957645 | Msa0819480:CDS |
| TGCAGGTGCAGATATGCCAT+TGG | 0.563395 | 5_3:-55956535 | Msa0819480:intron |
| TGTAACTGATCACCTCTCCC+TGG | 0.577413 | 5_3:+55957704 | None:intergenic |
| CAGAAACATAAGAGGAGTGG+AGG | 0.579021 | 5_3:-55957833 | Msa0819480:CDS |
| TAAATTTGTGGAGAAAGAGC+GGG | 0.586731 | 5_3:+55958886 | None:intergenic |
| TGTGTTATCATGGGGTTCCG+AGG | 0.589302 | 5_3:-55958540 | Msa0819480:CDS |
| AAACAGAAACATAAGAGGAG+TGG | 0.607869 | 5_3:-55957836 | Msa0819480:CDS |
| GACAACATTCACGTCAACAC+CGG | 0.608989 | 5_3:+55958114 | None:intergenic |
| TTGTTTGAAGCATAGTTCTG+TGG | 0.609227 | 5_3:-55955916 | Msa0819480:CDS |
| GAAAGTGAAAGAGTTCCCAT+TGG | 0.612884 | 5_3:+55959066 | None:intergenic |
| TTCGATAAAAGGTTATAGAG+CGG | 0.623688 | 5_3:-55957942 | Msa0819480:CDS |
| TTTCTGCACAGATGATCCAA+TGG | 0.629093 | 5_3:+55956519 | None:intergenic |
| TGGGGTTCCGAGGAATCGAA+TGG | 0.633090 | 5_3:-55958530 | Msa0819480:CDS |
| AGAAACATAAGAGGAGTGGA+GGG | 0.636056 | 5_3:-55957832 | Msa0819480:CDS |
| ACATCACCAACCAAAAGCAA+AGG | 0.637648 | 5_3:+55958382 | None:intergenic |
| CAAGAGTTTCAATGTATGAG+TGG | 0.645039 | 5_3:-55957478 | Msa0819480:CDS |
| AAAATCAACATCCCTGACGA+TGG | 0.646277 | 5_3:-55958730 | Msa0819480:CDS |
| TATGTTGTCGAGTAAGCGTG+TGG | 0.663768 | 5_3:-55958065 | Msa0819480:CDS |
| TATGTATGATTTGTTCAAGG+CGG | 0.680802 | 5_3:-55958203 | Msa0819480:CDS |
| AGGGTATATGGAAAACTCTG+AGG | 0.686033 | 5_3:-55957753 | Msa0819480:CDS |
| GAGTTTAGGAATTAATCACA+CGG | 0.713083 | 5_3:-55958638 | Msa0819480:CDS |
| AATCCAAACCAGCTTCTACG+AGG | 0.736492 | 5_3:+55957666 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAAAATCTTTTTC+GGG | - | chr5_3:55958132-55958151 | Msa0819480:CDS | 10.0% |
| !! | ATTTCAAAATTATGAAGATT+TGG | - | chr5_3:55956486-55956505 | Msa0819480:CDS | 15.0% |
| !! | TTTCAAAATTATGAAGATTT+GGG | - | chr5_3:55956487-55956506 | Msa0819480:CDS | 15.0% |
| !!! | TTTTTTGTATAATATTCGAA+TGG | - | chr5_3:55956912-55956931 | Msa0819480:intron | 15.0% |
| !! | AATTTAGATTATATATGCTT+AGG | - | chr5_3:55958166-55958185 | Msa0819480:CDS | 15.0% |
| !!! | GATTGAATTTTTGTAAGAAA+TGG | + | chr5_3:55955999-55956018 | None:intergenic | 20.0% |
| !! | GATTTCTTAAAAAACACTTT+AGG | - | chr5_3:55957366-55957385 | Msa0819480:intron | 20.0% |
| !!! | TTTTTCATCATATGAAACTA+TGG | + | chr5_3:55957523-55957542 | None:intergenic | 20.0% |
| !! | TAGTTTCATATGATGAAAAA+CGG | - | chr5_3:55957523-55957542 | Msa0819480:CDS | 20.0% |
| !! | ACAAAATTTGATATCATGTA+AGG | + | chr5_3:55957641-55957660 | None:intergenic | 20.0% |
| !! | ACATAAATAACTTCAACTTA+TGG | - | chr5_3:55958092-55958111 | Msa0819480:CDS | 20.0% |
| !! | CATAAATAACTTCAACTTAT+GGG | - | chr5_3:55958093-55958112 | Msa0819480:CDS | 20.0% |
| !! | ATTGAAAAAATCTGATGAAA+AGG | + | chr5_3:55958851-55958870 | None:intergenic | 20.0% |
| ! | AAAGGTTCAAATTCGTTAAT+GGG | + | chr5_3:55956268-55956287 | None:intergenic | 25.0% |
| ! | AAAAGGTTCAAATTCGTTAA+TGG | + | chr5_3:55956269-55956288 | None:intergenic | 25.0% |
| !! | ATTCCTAAACTCTCTAAAAA+AGG | + | chr5_3:55956286-55956305 | None:intergenic | 25.0% |
| ! | TTGGAAAAATTTCTACCTAA+AGG | - | chr5_3:55956319-55956338 | Msa0819480:intron | 25.0% |
| ! | CAAAGAAAATAACAACCTTT+AGG | + | chr5_3:55956337-55956356 | None:intergenic | 25.0% |
| ! | TTTCATGTATTGTGTTATCA+TGG | - | chr5_3:55956382-55956401 | Msa0819480:intron | 25.0% |
| ! | TTCATGTATTGTGTTATCAT+GGG | - | chr5_3:55956383-55956402 | Msa0819480:intron | 25.0% |
| !! | TTGATTGGTTGAAAAGAATT+GGG | - | chr5_3:55956596-55956615 | Msa0819480:intron | 25.0% |
| !!! | TTTAGAGTTTTTTCATCAAG+TGG | - | chr5_3:55956690-55956709 | Msa0819480:intron | 25.0% |
| !!! | TTAGAGTTTTTTCATCAAGT+GGG | - | chr5_3:55956691-55956710 | Msa0819480:intron | 25.0% |
| !!! | ACATATGTATGATTTGTTCA+AGG | - | chr5_3:55956726-55956745 | Msa0819480:intron | 25.0% |
| !! | TTTTCTCCAATTTAATAAGC+GGG | + | chr5_3:55957140-55957159 | None:intergenic | 25.0% |
| !! | GTTTTCTCCAATTTAATAAG+CGG | + | chr5_3:55957141-55957160 | None:intergenic | 25.0% |
| ! | GCTTATTAAATTGGAGAAAA+CGG | - | chr5_3:55957140-55957159 | Msa0819480:intron | 25.0% |
| ! | TTTGAATTACATTTCTCTTC+AGG | + | chr5_3:55957338-55957357 | None:intergenic | 25.0% |
| !! | ACCTTTAAAAAGTAAGTACA+GGG | + | chr5_3:55957695-55957714 | None:intergenic | 25.0% |
| !! | TACCTTTAAAAAGTAAGTAC+AGG | + | chr5_3:55957696-55957715 | None:intergenic | 25.0% |
| !! | TGACTATTACTACTGATTAT+TGG | + | chr5_3:55957896-55957915 | None:intergenic | 25.0% |
| ! | CAATAGATAAAGGATAACAA+TGG | + | chr5_3:55957921-55957940 | None:intergenic | 25.0% |
| TGTAAGAAATGGAAGAAGAT+GGG | + | chr5_3:55955988-55956007 | None:intergenic | 30.0% | |
| TTGTAAGAAATGGAAGAAGA+TGG | + | chr5_3:55955989-55956008 | None:intergenic | 30.0% | |
| ATGAGGAAATTGATGAAATG+TGG | + | chr5_3:55956178-55956197 | None:intergenic | 30.0% | |
| !!! | GAACCTTTTTTAGAGAGTTT+AGG | - | chr5_3:55956280-55956299 | Msa0819480:intron | 30.0% |
| GAGTTTAGGAATTAATCACA+CGG | - | chr5_3:55956294-55956313 | Msa0819480:intron | 30.0% | |
| TCATGTATTGTGTTATCATG+GGG | - | chr5_3:55956384-55956403 | Msa0819480:intron | 30.0% | |
| ! | ACAGAAGCAAGAGAAATTTT+TGG | - | chr5_3:55956436-55956455 | Msa0819480:intron | 30.0% |
| ! | CAGAAGCAAGAGAAATTTTT+GGG | - | chr5_3:55956437-55956456 | Msa0819480:intron | 30.0% |
| !!! | GAAATTTTTGGGTATGGAAA+TGG | - | chr5_3:55956448-55956467 | Msa0819480:intron | 30.0% |
| !! | AGTTTGTTGTTGTTCTTGAT+TGG | - | chr5_3:55956581-55956600 | Msa0819480:intron | 30.0% |
| ! | CTTGATTGGTTGAAAAGAAT+TGG | - | chr5_3:55956595-55956614 | Msa0819480:intron | 30.0% |
| !! | TATGTATGATTTGTTCAAGG+CGG | - | chr5_3:55956729-55956748 | Msa0819480:intron | 30.0% |
| AAACCTTCCAACAACAATTT+CGG | + | chr5_3:55956757-55956776 | None:intergenic | 30.0% | |
| ! | AAATTGTTGTTGGAAGGTTT+AGG | - | chr5_3:55956757-55956776 | Msa0819480:intron | 30.0% |
| ! | AATTGTTGTTGGAAGGTTTA+GGG | - | chr5_3:55956758-55956777 | Msa0819480:intron | 30.0% |
| !! | AAGAAGCTGTACTTGTTTTT+AGG | - | chr5_3:55956781-55956800 | Msa0819480:intron | 30.0% |
| TTGAGCAAACATTCGATAAA+AGG | - | chr5_3:55956979-55956998 | Msa0819480:intron | 30.0% | |
| TTCGATAAAAGGTTATAGAG+CGG | - | chr5_3:55956990-55957009 | Msa0819480:intron | 30.0% | |
| ! | ATTCTGCATAAATCAGCTTT+TGG | + | chr5_3:55957036-55957055 | None:intergenic | 30.0% |
| AATCATAAACGATGATCCAT+TGG | - | chr5_3:55957053-55957072 | Msa0819480:intron | 30.0% | |
| CTTCTAAACAGAAACATAAG+AGG | - | chr5_3:55957091-55957110 | Msa0819480:intron | 30.0% | |
| AAGCAGTAAAATTGTTTCCA+GGG | - | chr5_3:55957211-55957230 | Msa0819480:intron | 30.0% | |
| ATCTCACAAGACATTCTATT+GGG | + | chr5_3:55957395-55957414 | None:intergenic | 30.0% | |
| TATCTCACAAGACATTCTAT+TGG | + | chr5_3:55957396-55957415 | None:intergenic | 30.0% | |
| !! | ATACCCAACATACTTTTTAC+AGG | - | chr5_3:55957413-55957432 | Msa0819480:CDS | 30.0% |
| ATATGAAACTATGGTACTCA+AGG | + | chr5_3:55957514-55957533 | None:intergenic | 30.0% | |
| !!! | ACCCTGTACTTACTTTTTAA+AGG | - | chr5_3:55957691-55957710 | Msa0819480:CDS | 30.0% |
| ! | AGACAGCTTATTTCTTTGAA+AGG | + | chr5_3:55957726-55957745 | None:intergenic | 30.0% |
| TCAAAGAAATAAGCTGTCTT+TGG | - | chr5_3:55957727-55957746 | Msa0819480:CDS | 30.0% | |
| ! | GTTTTTCTTCTTTCAAACTC+AGG | - | chr5_3:55957835-55957854 | Msa0819480:CDS | 30.0% |
| GTTATCCTTTATCTATTGAG+TGG | - | chr5_3:55957923-55957942 | Msa0819480:CDS | 30.0% | |
| ! | CATTTACATGTTTTTCTCCT+AGG | - | chr5_3:55958037-55958056 | Msa0819480:CDS | 30.0% |
| TATCATATTGTCAAACTCCT+AGG | + | chr5_3:55958057-55958076 | None:intergenic | 30.0% | |
| TAGGAGTTTGACAATATGAT+AGG | - | chr5_3:55958056-55958075 | Msa0819480:CDS | 30.0% | |
| TAGGGTTGAAGAGAAAGATT+GGG | + | chr5_3:55955907-55955926 | None:intergenic | 35.0% | |
| TTAGGGTTGAAGAGAAAGAT+TGG | + | chr5_3:55955908-55955927 | None:intergenic | 35.0% | |
| !! | AAATGGAAGAAGATGGGTTT+TGG | + | chr5_3:55955982-55956001 | None:intergenic | 35.0% |
| TAAATTTGTGGAGAAAGAGC+GGG | + | chr5_3:55956049-55956068 | None:intergenic | 35.0% | |
| GTAAATTTGTGGAGAAAGAG+CGG | + | chr5_3:55956050-55956069 | None:intergenic | 35.0% | |
| !!! | TGTAGTTTTGTGTGTAGTGA+AGG | + | chr5_3:55956120-55956139 | None:intergenic | 35.0% |
| ! | GATGAAATGTGGAGAGTTTT+TGG | + | chr5_3:55956167-55956186 | None:intergenic | 35.0% |
| AGGAATTAATCACACGGAAT+TGG | - | chr5_3:55956300-55956319 | Msa0819480:intron | 35.0% | |
| !!! | GCAAGAGAAATTTTTGGGTA+TGG | - | chr5_3:55956442-55956461 | Msa0819480:intron | 35.0% |
| !!! | TGTTTGTTGTCCTTTGCTTT+TGG | - | chr5_3:55956540-55956559 | Msa0819480:intron | 35.0% |
| ! | GAATTGGGATTGAGAGTATA+TGG | - | chr5_3:55956611-55956630 | Msa0819480:intron | 35.0% |
| !!! | AGCTGTACTTGTTTTTAGGT+CGG | - | chr5_3:55956785-55956804 | Msa0819480:intron | 35.0% |
| ! | TTAGGTCGGTTTATTAAGTC+CGG | - | chr5_3:55956799-55956818 | Msa0819480:intron | 35.0% |
| TCCATTGGAGCTTATTAGTT+TGG | - | chr5_3:55957068-55957087 | Msa0819480:intron | 35.0% | |
| AAACAGAAACATAAGAGGAG+TGG | - | chr5_3:55957096-55957115 | Msa0819480:intron | 35.0% | |
| TTTAATAAGCGGGTCACAAT+AGG | + | chr5_3:55957130-55957149 | None:intergenic | 35.0% | |
| TTGTGACCCGCTTATTAAAT+TGG | - | chr5_3:55957131-55957150 | Msa0819480:intron | 35.0% | |
| GAAGCAGTAAAATTGTTTCC+AGG | - | chr5_3:55957210-55957229 | Msa0819480:intron | 35.0% | |
| CTCTTCAGGATTAGAATCTT+AGG | + | chr5_3:55957324-55957343 | None:intergenic | 35.0% | |
| ! | CGTCCTGTAAAAAGTATGTT+GGG | + | chr5_3:55957419-55957438 | None:intergenic | 35.0% |
| ! | ACGTCCTGTAAAAAGTATGT+TGG | + | chr5_3:55957420-55957439 | None:intergenic | 35.0% |
| !! | AACATACTTTTTACAGGACG+TGG | - | chr5_3:55957419-55957438 | Msa0819480:CDS | 35.0% |
| CAAGAGTTTCAATGTATGAG+TGG | - | chr5_3:55957454-55957473 | Msa0819480:CDS | 35.0% | |
| TTCAATGTATGAGTGGTTGA+AGG | - | chr5_3:55957461-55957480 | Msa0819480:CDS | 35.0% | |
| TTTGTGAATATGCATCCTGA+AGG | - | chr5_3:55957558-55957577 | Msa0819480:CDS | 35.0% | |
| TTTATACGTTGCCAGATTGT+TGG | + | chr5_3:55957585-55957604 | None:intergenic | 35.0% | |
| AACAGCCACTCAATAGATAA+AGG | + | chr5_3:55957931-55957950 | None:intergenic | 35.0% | |
| TAATGGCTGTGGGTATAATT+GGG | - | chr5_3:55958235-55958254 | Msa0819480:CDS | 35.0% | |
| TTCGGAAGGAAAGTTAGTAT+GGG | - | chr5_3:55958286-55958305 | Msa0819480:CDS | 35.0% | |
| !!! | TCGACTTTTTTTTGAGTTCG+AGG | - | chr5_3:55958450-55958469 | Msa0819480:CDS | 35.0% |
| TTCGTTCGTTGCAATTTCAT+AGG | - | chr5_3:55958486-55958505 | Msa0819480:CDS | 35.0% | |
| TTCGTTGCAATTTCATAGGT+GGG | - | chr5_3:55958490-55958509 | Msa0819480:CDS | 35.0% | |
| !!! | CAAGTTTTGTTGCAGTACAT+AGG | - | chr5_3:55958566-55958585 | Msa0819480:CDS | 35.0% |
| !!! | GCGTTTTGGAATGTCTATTT+TGG | - | chr5_3:55958695-55958714 | Msa0819480:CDS | 35.0% |
| !!! | TGGAATGTCTATTTTGGCAA+TGG | - | chr5_3:55958701-55958720 | Msa0819480:CDS | 35.0% |
| !!! | AATGTCTATTTTGGCAATGG+AGG | - | chr5_3:55958704-55958723 | Msa0819480:CDS | 35.0% |
| AGACAGAGAGTCAAATTTGT+TGG | - | chr5_3:55958746-55958765 | Msa0819480:CDS | 35.0% | |
| TTCAATTAAGAGCAGATGTG+TGG | - | chr5_3:55958865-55958884 | Msa0819480:CDS | 35.0% | |
| ! | TTGTTTGAAGCATAGTTCTG+TGG | - | chr5_3:55959016-55959035 | Msa0819480:CDS | 35.0% |
| ! | TGCAAGAAATTGGGGTTTTG+GGG | + | chr5_3:55955959-55955978 | None:intergenic | 40.0% |
| ! | GTGCAAGAAATTGGGGTTTT+GGG | + | chr5_3:55955960-55955979 | None:intergenic | 40.0% |
| !! | GGTTTTGGTGCAAGAAATTG+GGG | + | chr5_3:55955967-55955986 | None:intergenic | 40.0% |
| !! | GGGTTTTGGTGCAAGAAATT+GGG | + | chr5_3:55955968-55955987 | None:intergenic | 40.0% |
| !! | TGGGTTTTGGTGCAAGAAAT+TGG | + | chr5_3:55955969-55955988 | None:intergenic | 40.0% |
| !! | GGGTGGATTTTGAACAATTC+AGG | + | chr5_3:55956021-55956040 | None:intergenic | 40.0% |
| GCGCGTTTGATGTAAATTTG+TGG | + | chr5_3:55956061-55956080 | None:intergenic | 40.0% | |
| ! | ACGTTGTGCTTGGATTTTTG+TGG | + | chr5_3:55956083-55956102 | None:intergenic | 40.0% |
| !!! | GGATGTTGATTTTGGAGATG+AGG | + | chr5_3:55956195-55956214 | None:intergenic | 40.0% |
| !!! | ATCGTCAGGGATGTTGATTT+TGG | + | chr5_3:55956203-55956222 | None:intergenic | 40.0% |
| AAAATCAACATCCCTGACGA+TGG | - | chr5_3:55956202-55956221 | Msa0819480:intron | 40.0% | |
| ! | TGGGTATGGAAATGGAGTTT+TGG | - | chr5_3:55956456-55956475 | Msa0819480:intron | 40.0% |
| !! | TGTTGTCCTTTGCTTTTGGT+TGG | - | chr5_3:55956544-55956563 | Msa0819480:intron | 40.0% |
| ACATCACCAACCAAAAGCAA+AGG | + | chr5_3:55956553-55956572 | None:intergenic | 40.0% | |
| CTAGTTCAAGCACTTATAGC+TGG | - | chr5_3:55956650-55956669 | Msa0819480:intron | 40.0% | |
| ! | GATCCGAAATTGTTGTTGGA+AGG | - | chr5_3:55956751-55956770 | Msa0819480:intron | 40.0% |
| AGGTTATAGAGCGGTTTGTA+AGG | - | chr5_3:55956999-55957018 | Msa0819480:intron | 40.0% | |
| GCCAAACTAATAAGCTCCAA+TGG | + | chr5_3:55957072-55957091 | None:intergenic | 40.0% | |
| AGAAACATAAGAGGAGTGGA+GGG | - | chr5_3:55957100-55957119 | Msa0819480:intron | 40.0% | |
| CTTGCTGAAACTAGGGTATA+TGG | - | chr5_3:55957167-55957186 | Msa0819480:intron | 40.0% | |
| AGGGTATATGGAAAACTCTG+AGG | - | chr5_3:55957179-55957198 | Msa0819480:intron | 40.0% | |
| ! | TATGGAAAACTCTGAGGAGA+TGG | - | chr5_3:55957185-55957204 | Msa0819480:intron | 40.0% |
| GTAAAATTGTTTCCAGGGAG+AGG | - | chr5_3:55957216-55957235 | Msa0819480:intron | 40.0% | |
| TGATCAGTTACAGGAGAGAT+TGG | - | chr5_3:55957239-55957258 | Msa0819480:intron | 40.0% | |
| TTGTAGCACTGCGATTAGAA+TGG | - | chr5_3:55957287-55957306 | Msa0819480:intron | 40.0% | |
| TGTATGAGTGGTTGAAGGAA+AGG | - | chr5_3:55957466-55957485 | Msa0819480:CDS | 40.0% | |
| AGTAAGTACAGGGTTTAGCA+AGG | + | chr5_3:55957685-55957704 | None:intergenic | 40.0% | |
| ACTAAGACAGCATGTACCAA+GGG | + | chr5_3:55957817-55957836 | None:intergenic | 40.0% | |
| AACTAAGACAGCATGTACCA+AGG | + | chr5_3:55957818-55957837 | None:intergenic | 40.0% | |
| GTCGTATGTAAATCTGAGCT+CGG | - | chr5_3:55957957-55957976 | Msa0819480:CDS | 40.0% | |
| ! | TTATATATGCTTAGGCGTCG+TGG | - | chr5_3:55958174-55958193 | Msa0819480:CDS | 40.0% |
| ! | TATATATGCTTAGGCGTCGT+GGG | - | chr5_3:55958175-55958194 | Msa0819480:CDS | 40.0% |
| CGTAATCAAGAGTTTGCAGA+AGG | - | chr5_3:55958203-55958222 | Msa0819480:CDS | 40.0% | |
| GTAATGGCTGTGGGTATAAT+TGG | - | chr5_3:55958234-55958253 | Msa0819480:CDS | 40.0% | |
| GTTCGGAAGGAAAGTTAGTA+TGG | - | chr5_3:55958285-55958304 | Msa0819480:CDS | 40.0% | |
| GTTCAATCCATTTGTACACG+AGG | - | chr5_3:55958348-55958367 | Msa0819480:CDS | 40.0% | |
| TTTCTGCACAGATGATCCAA+TGG | + | chr5_3:55958416-55958435 | None:intergenic | 40.0% | |
| !!! | CTTTTTTTTGAGTTCGAGGC+AGG | - | chr5_3:55958454-55958473 | Msa0819480:CDS | 40.0% |
| GTTCGTTGCAATTTCATAGG+TGG | - | chr5_3:55958489-55958508 | Msa0819480:CDS | 40.0% | |
| TTTGTTGCAGTACATAGGCA+AGG | - | chr5_3:55958571-55958590 | Msa0819480:CDS | 40.0% | |
| CCAAACTGCACTTCTTTCAT+CGG | + | chr5_3:55958598-55958617 | None:intergenic | 40.0% | |
| ! | CGATGAAAGAAGTGCAGTTT+GGG | - | chr5_3:55958596-55958615 | Msa0819480:CDS | 40.0% |
| ! | GTAGGTTTCGTGCATTTTGT+AGG | - | chr5_3:55958635-55958654 | Msa0819480:CDS | 40.0% |
| ! | TGTAGGAGGTATGTTAGTGT+CGG | - | chr5_3:55958652-55958671 | Msa0819480:CDS | 40.0% |
| TTTGTTGGCAACTTTCTGTG+AGG | - | chr5_3:55958761-55958780 | Msa0819480:CDS | 40.0% | |
| ATTAAGAGCAGATGTGTGGT+TGG | - | chr5_3:55958869-55958888 | Msa0819480:CDS | 40.0% | |
| TTAAGAGCAGATGTGTGGTT+GGG | - | chr5_3:55958870-55958889 | Msa0819480:CDS | 40.0% | |
| TTGGGGAATAGTATTAGTGC+AGG | - | chr5_3:55958888-55958907 | Msa0819480:CDS | 40.0% | |
| ! | CGTTTTGTCAGCAGTTTTTG+CGG | - | chr5_3:55958939-55958958 | Msa0819480:CDS | 40.0% |
| !!! | GGTTTTGGGGTGTGGAATTA+GGG | + | chr5_3:55955925-55955944 | None:intergenic | 45.0% |
| ! | GGTGTGGAATTAGGGTTTTG+GGG | + | chr5_3:55955938-55955957 | None:intergenic | 45.0% |
| ! | GGGTGTGGAATTAGGGTTTT+GGG | + | chr5_3:55955939-55955958 | None:intergenic | 45.0% |
| !!! | GGTTTTGGGGTGTGGAATTA+GGG | + | chr5_3:55955925-55955944 | None:intergenic | 45.0% |
| ! | GGTGCAAGAAATTGGGGTTT+TGG | + | chr5_3:55955961-55955980 | None:intergenic | 45.0% |
| TGGAGAAAGAGCGGGAATTT+GGG | + | chr5_3:55956041-55956060 | None:intergenic | 45.0% | |
| CAAATAGAGCACGTTGTGCT+TGG | + | chr5_3:55956093-55956112 | None:intergenic | 45.0% | |
| ATCTTCGCCATTCGATTCCT+CGG | + | chr5_3:55956412-55956431 | None:intergenic | 45.0% | |
| GACAACATTCACGTCAACAC+CGG | + | chr5_3:55956821-55956840 | None:intergenic | 45.0% | |
| TATGTTGTCGAGTAAGCGTG+TGG | - | chr5_3:55956867-55956886 | Msa0819480:intron | 45.0% | |
| AGAGCGGTTTGTAAGGAGTT+AGG | - | chr5_3:55957006-55957025 | Msa0819480:intron | 45.0% | |
| CAGAAACATAAGAGGAGTGG+AGG | - | chr5_3:55957099-55957118 | Msa0819480:intron | 45.0% | |
| ACGGCTTTCTTGCTGAAACT+AGG | - | chr5_3:55957159-55957178 | Msa0819480:intron | 45.0% | |
| CGGCTTTCTTGCTGAAACTA+GGG | - | chr5_3:55957160-55957179 | Msa0819480:intron | 45.0% | |
| AATCCAAACCAGCTTCTACG+AGG | + | chr5_3:55957269-55957288 | None:intergenic | 45.0% | |
| ATCCTGAAGGTCCAACAATC+TGG | - | chr5_3:55957571-55957590 | Msa0819480:CDS | 45.0% | |
| CAAGGGGAAGCAATGGAATT+TGG | + | chr5_3:55957800-55957819 | None:intergenic | 45.0% | |
| CAAATTCCATTGCTTCCCCT+TGG | - | chr5_3:55957798-55957817 | Msa0819480:CDS | 45.0% | |
| CTAAGACAGCATGTACCAAG+GGG | + | chr5_3:55957816-55957835 | None:intergenic | 45.0% | |
| ! | ATATATGCTTAGGCGTCGTG+GGG | - | chr5_3:55958176-55958195 | Msa0819480:CDS | 45.0% |
| GAGTTTGCAGAAGGAAAGAG+AGG | - | chr5_3:55958212-55958231 | Msa0819480:CDS | 45.0% | |
| GCAGAAGGAAAGAGAGGTAA+TGG | - | chr5_3:55958218-55958237 | Msa0819480:CDS | 45.0% | |
| ! | GAAAGAGAGGTAATGGCTGT+GGG | - | chr5_3:55958225-55958244 | Msa0819480:CDS | 45.0% |
| ! | GTGTTTGCTAGTTGAGTCCT+TGG | - | chr5_3:55958260-55958279 | Msa0819480:CDS | 45.0% |
| TTTGCTAGTTGAGTCCTTGG+TGG | - | chr5_3:55958263-55958282 | Msa0819480:CDS | 45.0% | |
| ! | TAGTTGAGTCCTTGGTGGTT+CGG | - | chr5_3:55958268-55958287 | Msa0819480:CDS | 45.0% |
| AATCCATTTGTACACGAGGC+AGG | - | chr5_3:55958352-55958371 | Msa0819480:CDS | 45.0% | |
| !! | CAATTTCATAGGTGGGCTGA+AGG | - | chr5_3:55958497-55958516 | Msa0819480:CDS | 45.0% |
| !! | TGAAGGAGAGGGTTTGTTAG+AGG | - | chr5_3:55958514-55958533 | Msa0819480:CDS | 45.0% |
| ! | CCGATGAAAGAAGTGCAGTT+TGG | - | chr5_3:55958595-55958614 | Msa0819480:CDS | 45.0% |
| GGTACTAGTGCTAGGTTAGT+AGG | - | chr5_3:55958617-55958636 | Msa0819480:CDS | 45.0% | |
| ! | GGTTTCGTGCATTTTGTAGG+AGG | - | chr5_3:55958638-55958657 | Msa0819480:CDS | 45.0% |
| ! | GTAGGAGGTATGTTAGTGTC+GGG | - | chr5_3:55958653-55958672 | Msa0819480:CDS | 45.0% |
| ! | TTTTGGCAATGGAGGCTGTA+AGG | - | chr5_3:55958712-55958731 | Msa0819480:CDS | 45.0% |
| ATGGAGGCTGTAAGGATCAA+AGG | - | chr5_3:55958720-55958739 | Msa0819480:CDS | 45.0% | |
| TGGAGGCTGTAAGGATCAAA+GGG | - | chr5_3:55958721-55958740 | Msa0819480:CDS | 45.0% | |
| !! | AGGGCGTTTGTTTGTTGTAG+TGG | - | chr5_3:55958825-55958844 | Msa0819480:CDS | 45.0% |
| TAAGAGCAGATGTGTGGTTG+GGG | - | chr5_3:55958871-55958890 | Msa0819480:CDS | 45.0% | |
| GGAATAGTATTAGTGCAGGC+CGG | - | chr5_3:55958892-55958911 | Msa0819480:CDS | 45.0% | |
| GCATTTCTGCTGTGTTTGTC+AGG | - | chr5_3:55958975-55958994 | Msa0819480:CDS | 45.0% | |
| ! | CATAGTTCTGTGGTTCTGCT+GGG | - | chr5_3:55959026-55959045 | Msa0819480:CDS | 45.0% |
| !!! | AAAAAAAAAAAAATCTTTTT+CGG | - | chr5_3:55958131-55958150 | Msa0819480:CDS | 5.0% |
| !!! | GGGTTTTGGGGTGTGGAATT+AGG | + | chr5_3:55955926-55955945 | None:intergenic | 50.0% |
| !!! | GGAATTAGGGTTTTGGGGTG+TGG | + | chr5_3:55955933-55955952 | None:intergenic | 50.0% |
| ! | GGGGTGTGGAATTAGGGTTT+TGG | + | chr5_3:55955940-55955959 | None:intergenic | 50.0% |
| !!! | GGGTTTTGGGGTGTGGAATT+AGG | + | chr5_3:55955926-55955945 | None:intergenic | 50.0% |
| !!! | GAAATTGGGGTTTTGGGGTG+TGG | + | chr5_3:55955954-55955973 | None:intergenic | 50.0% |
| AGAAAGAGCGGGAATTTGGG+TGG | + | chr5_3:55956038-55956057 | None:intergenic | 50.0% | |
| GTGGAGAAAGAGCGGGAATT+TGG | + | chr5_3:55956042-55956061 | None:intergenic | 50.0% | |
| GAAAAACGTCGCCATCGTCA+GGG | + | chr5_3:55956216-55956235 | None:intergenic | 50.0% | |
| ! | ACGTTTTTCGTGCTCTCAGC+AGG | - | chr5_3:55956227-55956246 | Msa0819480:intron | 50.0% |
| TGTGTTATCATGGGGTTCCG+AGG | - | chr5_3:55956392-55956411 | Msa0819480:intron | 50.0% | |
| GGCGGATCCGAAATTGTTGT+TGG | - | chr5_3:55956747-55956766 | Msa0819480:intron | 50.0% | |
| TGTAACTGATCACCTCTCCC+TGG | + | chr5_3:55957231-55957250 | None:intergenic | 50.0% | |
| AGGGAGAGGTGATCAGTTAC+AGG | - | chr5_3:55957230-55957249 | Msa0819480:intron | 50.0% | |
| TGCCAGATTGTTGGACCTTC+AGG | + | chr5_3:55957576-55957595 | None:intergenic | 50.0% | |
| CATGTACCAAGGGGAAGCAA+TGG | + | chr5_3:55957807-55957826 | None:intergenic | 50.0% | |
| ! | TATATGCTTAGGCGTCGTGG+GGG | - | chr5_3:55958177-55958196 | Msa0819480:CDS | 50.0% |
| ! | GGAAAGAGAGGTAATGGCTG+TGG | - | chr5_3:55958224-55958243 | Msa0819480:CDS | 50.0% |
| ACTTTCCTTCCGAACCACCA+AGG | + | chr5_3:55958280-55958299 | None:intergenic | 50.0% | |
| ACTCCTGCCTCGTGTACAAA+TGG | + | chr5_3:55958358-55958377 | None:intergenic | 50.0% | |
| AGCTGGTTGCTTGTCATTGC+AGG | - | chr5_3:55958380-55958399 | Msa0819480:CDS | 50.0% | |
| TGCAGGTGCAGATATGCCAT+TGG | - | chr5_3:55958397-55958416 | Msa0819480:CDS | 50.0% | |
| !! | GAGAGGGTTTGTTAGAGGCT+GGG | - | chr5_3:55958519-55958538 | Msa0819480:CDS | 50.0% |
| GCAGTTTGGGTACTAGTGCT+AGG | - | chr5_3:55958609-55958628 | Msa0819480:CDS | 50.0% | |
| ! | GAGGTATGTTAGTGTCGGGT+GGG | - | chr5_3:55958657-55958676 | Msa0819480:CDS | 50.0% |
| ! | AGGTATGTTAGTGTCGGGTG+GGG | - | chr5_3:55958658-55958677 | Msa0819480:CDS | 50.0% |
| GGAGGCTGTAAGGATCAAAG+GGG | - | chr5_3:55958722-55958741 | Msa0819480:CDS | 50.0% | |
| TTGGCAACTTTCTGTGAGGC+TGG | - | chr5_3:55958765-55958784 | Msa0819480:CDS | 50.0% | |
| !!! | GGCTGGTTTTTGCTTCAGAG+TGG | - | chr5_3:55958782-55958801 | Msa0819480:CDS | 50.0% |
| TTTGAGCTTCTGCCAGATGC+AGG | - | chr5_3:55958805-55958824 | Msa0819480:CDS | 50.0% | |
| TTGAGCTTCTGCCAGATGCA+GGG | - | chr5_3:55958806-55958825 | Msa0819480:CDS | 50.0% | |
| ACAAACAAACGCCCTGCATC+TGG | + | chr5_3:55958820-55958839 | None:intergenic | 50.0% | |
| !!! | AACCCGAGCCATTTTGAGAC+CGG | + | chr5_3:55958914-55958933 | None:intergenic | 50.0% |
| ! | GCATAGTTCTGTGGTTCTGC+TGG | - | chr5_3:55959025-55959044 | Msa0819480:CDS | 50.0% |
| !! | GTGGTTCTGCTGGGTTTTCT+CGG | - | chr5_3:55959035-55959054 | Msa0819480:CDS | 50.0% |
| CTCGGCTGTGGTGATTTATG+CGG | - | chr5_3:55959053-55959072 | Msa0819480:CDS | 50.0% | |
| TCGGCTGTGGTGATTTATGC+GGG | - | chr5_3:55959054-55959073 | Msa0819480:CDS | 50.0% | |
| CGAAAAACGTCGCCATCGTC+AGG | + | chr5_3:55956217-55956236 | None:intergenic | 55.0% | |
| TGGGGTTCCGAGGAATCGAA+TGG | - | chr5_3:55956402-55956421 | Msa0819480:intron | 55.0% | |
| TTGGACTGCCTCGTAGAAGC+TGG | - | chr5_3:55957258-55957277 | Msa0819480:intron | 55.0% | |
| CTGCCTCGTAGAAGCTGGTT+TGG | - | chr5_3:55957263-55957282 | Msa0819480:intron | 55.0% | |
| ! | TGAGTCCTTGGTGGTTCGGA+AGG | - | chr5_3:55958272-55958291 | Msa0819480:CDS | 55.0% |
| !! | TCATAGGTGGGCTGAAGGAG+AGG | - | chr5_3:55958502-55958521 | Msa0819480:CDS | 55.0% |
| !! | CATAGGTGGGCTGAAGGAGA+GGG | - | chr5_3:55958503-55958522 | Msa0819480:CDS | 55.0% |
| !! | GGAGAGGGTTTGTTAGAGGC+TGG | - | chr5_3:55958518-55958537 | Msa0819480:CDS | 55.0% |
| !! | AGGGTTTGTTAGAGGCTGGG+AGG | - | chr5_3:55958522-55958541 | Msa0819480:CDS | 55.0% |
| ! | GGAGGTATGTTAGTGTCGGG+TGG | - | chr5_3:55958656-55958675 | Msa0819480:CDS | 55.0% |
| ! | GGTATGTTAGTGTCGGGTGG+GGG | - | chr5_3:55958659-55958678 | Msa0819480:CDS | 55.0% |
| AGTGCAGGCCGGTCTCAAAA+TGG | - | chr5_3:55958903-55958922 | Msa0819480:CDS | 55.0% | |
| AGGCCGGTCTCAAAATGGCT+CGG | - | chr5_3:55958908-55958927 | Msa0819480:CDS | 55.0% | |
| ! | GGTCTCAAAATGGCTCGGGT+TGG | - | chr5_3:55958913-55958932 | Msa0819480:CDS | 55.0% |
| ! | ACACGAGGCAGGAGTGTAGC+TGG | - | chr5_3:55958363-55958382 | Msa0819480:CDS | 60.0% |
| ! | GAGTTCGAGGCAGGAGTGCA+AGG | - | chr5_3:55958463-55958482 | Msa0819480:CDS | 60.0% |
| AGAGGCTGGGAGGTTCAGAG+AGG | - | chr5_3:55958532-55958551 | Msa0819480:CDS | 60.0% | |
| GAGGCTGGGAGGTTCAGAGA+GGG | - | chr5_3:55958533-55958552 | Msa0819480:CDS | 60.0% | |
| CTGGGAGGTTCAGAGAGGGT+GGG | - | chr5_3:55958537-55958556 | Msa0819480:CDS | 60.0% | |
| GAGGTTCAGAGAGGGTGGGT+AGG | - | chr5_3:55958541-55958560 | Msa0819480:CDS | 60.0% | |
| !! | GAGTGTGGCTTGGGGCGTTT+TGG | - | chr5_3:55958681-55958700 | Msa0819480:CDS | 60.0% |
| GGCCGGTCTCAAAATGGCTC+GGG | - | chr5_3:55958909-55958928 | Msa0819480:CDS | 60.0% | |
| ! | CTGCTGGGTTTTCTCGGCTG+TGG | - | chr5_3:55959041-55959060 | Msa0819480:CDS | 60.0% |
| GCTGGGAGGTTCAGAGAGGG+TGG | - | chr5_3:55958536-55958555 | Msa0819480:CDS | 65.0% | |
| ! | TAGTGTCGGGTGGGGGAGTG+TGG | - | chr5_3:55958666-55958685 | Msa0819480:CDS | 65.0% |
| ! | TCGGGTGGGGGAGTGTGGCT+TGG | - | chr5_3:55958671-55958690 | Msa0819480:CDS | 70.0% |
| ! | CGGGTGGGGGAGTGTGGCTT+GGG | - | chr5_3:55958672-55958691 | Msa0819480:CDS | 70.0% |
| ! | GGGTGGGGGAGTGTGGCTTG+GGG | - | chr5_3:55958673-55958692 | Msa0819480:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 55955869 | 55959085 | 55955869 | ID=Msa0819480;Name=Msa0819480 |
| chr5_3 | mRNA | 55955869 | 55959085 | 55955869 | ID=Msa0819480-mRNA-1;Parent=Msa0819480;Name=Msa0819480-mRNA-1;_AED=0.12;_eAED=0.15;_QI=0|0|0|1|1|1|3|0|615 |
| chr5_3 | exon | 55957410 | 55959085 | 55957410 | ID=Msa0819480-mRNA-1:exon:16928;Parent=Msa0819480-mRNA-1 |
| chr5_3 | exon | 55956470 | 55956552 | 55956470 | ID=Msa0819480-mRNA-1:exon:16927;Parent=Msa0819480-mRNA-1 |
| chr5_3 | exon | 55955869 | 55955957 | 55955869 | ID=Msa0819480-mRNA-1:exon:16926;Parent=Msa0819480-mRNA-1 |
| chr5_3 | CDS | 55957410 | 55959085 | 55957410 | ID=Msa0819480-mRNA-1:cds;Parent=Msa0819480-mRNA-1 |
| chr5_3 | CDS | 55956470 | 55956552 | 55956470 | ID=Msa0819480-mRNA-1:cds;Parent=Msa0819480-mRNA-1 |
| chr5_3 | CDS | 55955869 | 55955957 | 55955869 | ID=Msa0819480-mRNA-1:cds;Parent=Msa0819480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
