AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0715650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715650 MtrunA17_Chr5g0403031 95.109 184 9 0 1 184 1 184 1.38e-123 346
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715650 AT4G37090.1 45.946 185 88 4 1 180 1 178 5.91e-33 116
Msa0715650 AT4G37090.2 45.946 185 86 5 1 180 1 176 1.92e-26 99.8

Find 44 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAATCGATTCAGAAAATTT+AGG 0.187077 5_1:+8759721 None:intergenic
AGAAAGAACGTCGGCGAAAA+TGG 0.201521 5_1:-8758279 Msa0715650:CDS
AAGCATTTCAACAATGCTTT+TGG 0.238659 5_1:+8758129 None:intergenic
GCTGGTTTGCTCACAATAAT+AGG 0.265535 5_1:+8757816 None:intergenic
AAGAGAAAATCCAAGGATTC+AGG 0.267478 5_1:-8757947 Msa0715650:CDS
TAATCGATTCAGAAAATTTA+GGG 0.281735 5_1:+8759722 None:intergenic
TACGTCTACTTTCCAGTTCC+GGG 0.304004 5_1:-8757695 Msa0715650:CDS
TTACGTCTACTTTCCAGTTC+CGG 0.332647 5_1:-8757696 Msa0715650:CDS
CCTTGGATTTCTTGAAAGAA+AGG 0.335846 5_1:-8757770 Msa0715650:CDS
TGAGGAGGAAGATAAATTAA+AGG 0.340761 5_1:-8757984 Msa0715650:CDS
AGAGATTCGAAAGATTAAAA+AGG 0.343332 5_1:-8759461 Msa0715650:CDS
CCCTACTAACCCTGAATCCT+TGG 0.350071 5_1:+8757937 None:intergenic
TTCAAAACAGCAGACGATCT+TGG 0.392274 5_1:+8757735 None:intergenic
TATTATAGGACAGGATATAT+AGG 0.399759 5_1:-8756716 Msa0715650:intron
AGAAATCCCACAGCAGTGTT+TGG 0.406449 5_1:+8758154 None:intergenic
GAAAGAACGTCGGCGAAAAT+GGG 0.410361 5_1:-8758278 Msa0715650:CDS
AAGGCAGTCTTTAAGCATTC+AGG 0.411790 5_1:+8757789 None:intergenic
TGTTCAGCTGTGAATTCCTC+AGG 0.416780 5_1:+8759633 None:intergenic
TGAGGAATTCACAGCTGAAC+AGG 0.425645 5_1:-8759631 Msa0715650:intron
TGTTGAAATGCTTGCAGCTA+AGG 0.442831 5_1:-8758119 Msa0715650:CDS
CTGGCGTATGATCCCGGAAC+TGG 0.452601 5_1:+8757683 None:intergenic
AATTAAAGGCTACCACTTCA+AGG 0.462256 5_1:-8757970 Msa0715650:CDS
TTTAAGCATTCAGGAGGAGC+TGG 0.495755 5_1:+8757798 None:intergenic
AGAGAAAATCCAAGGATTCA+GGG 0.497993 5_1:-8757946 Msa0715650:intron
TCATTTCTGGCGTATGATCC+CGG 0.513063 5_1:+8757677 None:intergenic
AGGACAGGATATATAGGAAG+TGG 0.516185 5_1:-8756710 Msa0715650:intron
TTAGTAGCTTTGGATGGTCG+AGG 0.518576 5_1:+8758241 None:intergenic
ATCAGAATCGTTGTCTGACA+TGG 0.553832 5_1:+8759659 None:intergenic
AAGTAGACGTAATGCTTGGT+TGG 0.572908 5_1:+8757707 None:intergenic
TGAATGCTTAAAGACTGCCT+TGG 0.581346 5_1:-8757787 Msa0715650:CDS
TGGAAAGTAGACGTAATGCT+TGG 0.583915 5_1:+8757703 None:intergenic
GGGATCATACGCCAGAAATG+AGG 0.587190 5_1:-8757675 Msa0715650:exon
CCTTTCTTTCAAGAAATCCA+AGG 0.588770 5_1:+8757770 None:intergenic
GTTCAGCTGTGAATTCCTCA+GGG 0.589265 5_1:+8759634 None:intergenic
TTCAAGGAAGAGAAAATCCA+AGG 0.598658 5_1:-8757954 Msa0715650:CDS
TTTATTAACTGAGACTGATG+AGG 0.602529 5_1:-8758002 Msa0715650:CDS
GCATTTACAGGCATTTGCAA+AGG 0.604242 5_1:+8756662 None:intergenic
ATTAACTGAGACTGATGAGG+AGG 0.608820 5_1:-8757999 Msa0715650:CDS
AGTGGTTTCACTCTCAGCTG+AGG 0.620595 5_1:-8756692 Msa0715650:three_prime_UTR
GCAGTCTTTAAGCATTCAGG+AGG 0.620920 5_1:+8757792 None:intergenic
GTGGTTTCACTCTCAGCTGA+GGG 0.625383 5_1:-8756691 Msa0715650:three_prime_UTR
TTCAGCTGTGAATTCCTCAG+GGG 0.664205 5_1:+8759635 None:intergenic
CAACGATTCTGATGCCCCTG+AGG 0.672395 5_1:-8759649 Msa0715650:CDS
ATATTGAAGAGAAAGAACGT+CGG 0.783151 5_1:-8758288 Msa0715650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATATTGATAGATTAT+TGG - chr5_1:8757350-8757369 Msa0715650:intron 10.0%
!! TTAGTTTCATAAATTATTAT+GGG - chr5_1:8757845-8757864 Msa0715650:intron 10.0%
!! AACAATAAATAACTTAATAA+TGG + chr5_1:8759032-8759051 None:intergenic 10.0%
!! CTAAATTATTAAACTATAAA+AGG + chr5_1:8759596-8759615 None:intergenic 10.0%
!! ATTCATTGAAACAAATAAAT+TGG + chr5_1:8756777-8756796 None:intergenic 15.0%
!!! TTTAATTTGTTTTGTTTTTG+AGG - chr5_1:8756815-8756834 Msa0715650:intron 15.0%
!!! TTTTCAATCTTATTTTTGTT+GGG - chr5_1:8757050-8757069 Msa0715650:intron 15.0%
!!! AAGAATTTTGATAAAAGATT+TGG - chr5_1:8757520-8757539 Msa0715650:intron 15.0%
!!! TATTTAAATTTTAACAACAC+TGG - chr5_1:8757754-8757773 Msa0715650:CDS 15.0%
!!! GTTAGTTTCATAAATTATTA+TGG - chr5_1:8757844-8757863 Msa0715650:intron 15.0%
!! ACAAAAAGAAAAAAGAAAAA+TGG + chr5_1:8759520-8759539 None:intergenic 15.0%
!! ATTATTAAACTATAAAAGGT+TGG + chr5_1:8759592-8759611 None:intergenic 15.0%
!! ATAATTTAGTTATAAATGTG+AGG - chr5_1:8759607-8759626 Msa0715650:intron 15.0%
!!! TAATCGATTCAGAAAATTTA+GGG + chr5_1:8756640-8756659 None:intergenic 20.0%
!! TGAAACAAATAAATTGGAAT+TGG + chr5_1:8756771-8756790 None:intergenic 20.0%
!! TTAAAAAGGAAAACAAAATC+AGG - chr5_1:8756912-8756931 Msa0715650:intron 20.0%
!!! ATGAGGTTAATTTAAGTTAT+TGG - chr5_1:8756942-8756961 Msa0715650:intron 20.0%
!!! GTTTTCAATCTTATTTTTGT+TGG - chr5_1:8757049-8757068 Msa0715650:intron 20.0%
!!! TTTCAATCTTATTTTTGTTG+GGG - chr5_1:8757051-8757070 Msa0715650:intron 20.0%
!!! TCATTTTGCTGATTATTAAT+TGG - chr5_1:8757470-8757489 Msa0715650:intron 20.0%
!! AATTTAAATAACAGCTATAG+TGG + chr5_1:8757744-8757763 None:intergenic 20.0%
!! ATAATTGCATAGAAATAGAT+AGG + chr5_1:8758455-8758474 None:intergenic 20.0%
!! ATGGAAATATATATAACTAC+AGG + chr5_1:8758504-8758523 None:intergenic 20.0%
!!! TCAAATTATTTGTCGTTTTA+AGG + chr5_1:8759073-8759092 None:intergenic 20.0%
!! GTAATCGATTCAGAAAATTT+AGG + chr5_1:8756641-8756660 None:intergenic 25.0%
! AGAGATTCGAAAGATTAAAA+AGG - chr5_1:8756898-8756917 Msa0715650:intron 25.0%
! GATAGATTATTGGATAATCT+CGG - chr5_1:8757360-8757379 Msa0715650:intron 25.0%
! ATAGATTATTGGATAATCTC+GGG - chr5_1:8757361-8757380 Msa0715650:intron 25.0%
!! TTTGCTGATTATTAATTGGT+TGG - chr5_1:8757474-8757493 Msa0715650:intron 25.0%
! ATTATTAATTGGTTGGCATT+AGG - chr5_1:8757481-8757500 Msa0715650:intron 25.0%
! TCTCTTATACTGCATAATTA+TGG - chr5_1:8757951-8757970 Msa0715650:CDS 25.0%
! CTCTTATACTGCATAATTAT+GGG - chr5_1:8757952-8757971 Msa0715650:CDS 25.0%
! ATATTAGACATCACTATATG+TGG + chr5_1:8758031-8758050 None:intergenic 25.0%
! ATGTCTAATATGACTTTACA+TGG - chr5_1:8758040-8758059 Msa0715650:intron 25.0%
! CAAAGCTACTAAAAAATCTA+GGG - chr5_1:8758129-8758148 Msa0715650:CDS 25.0%
! TCTTTAGATAAATCTCTAAG+AGG - chr5_1:8758311-8758330 Msa0715650:intron 25.0%
!!! TTTATAGATTTTTTTGGCCA+AGG - chr5_1:8758726-8758745 Msa0715650:intron 25.0%
! ATAATCAACTTCAACTAACA+TGG + chr5_1:8758844-8758863 None:intergenic 25.0%
! GAATGATAACACTGATAAAA+GGG - chr5_1:8758925-8758944 Msa0715650:intron 25.0%
! AATGATAACACTGATAAAAG+GGG - chr5_1:8758926-8758945 Msa0715650:intron 25.0%
!! TTGTAAGCAATATTTTGTGA+TGG - chr5_1:8759094-8759113 Msa0715650:intron 25.0%
! AAGAAAAAACATCATCTTGT+TGG - chr5_1:8759235-8759254 Msa0715650:intron 25.0%
!!! AAACACTTTTGATTCTGTTT+AGG - chr5_1:8759307-8759326 Msa0715650:intron 25.0%
!!! AACACTTTTGATTCTGTTTA+GGG - chr5_1:8759308-8759327 Msa0715650:intron 25.0%
! TCCTATAATAGAAAAACAAC+TGG + chr5_1:8759633-8759652 None:intergenic 25.0%
!!! TTGTTTTTCTATTATAGGAC+AGG - chr5_1:8759634-8759653 Msa0715650:CDS 25.0%
! TATTATAGGACAGGATATAT+AGG - chr5_1:8759643-8759662 Msa0715650:CDS 25.0%
CAAAATCAGGTTTAGTTATG+AGG - chr5_1:8756925-8756944 Msa0715650:intron 30.0%
GATATTGATCAATCTTGATG+TGG - chr5_1:8757118-8757137 Msa0715650:intron 30.0%
! ATTTTGTACTGAATAGTGTG+TGG + chr5_1:8757216-8757235 None:intergenic 30.0%
TGCAGTATAAGAGAGAATAA+AGG + chr5_1:8757945-8757964 None:intergenic 30.0%
TAATATGACTTTACATGGCA+GGG - chr5_1:8758045-8758064 Msa0715650:intron 30.0%
ATATTGAAGAGAAAGAACGT+CGG - chr5_1:8758071-8758090 Msa0715650:intron 30.0%
!!! GATTTTTTAGTAGCTTTGGA+TGG + chr5_1:8758127-8758146 None:intergenic 30.0%
!!! CCTAGATTTTTTAGTAGCTT+TGG + chr5_1:8758131-8758150 None:intergenic 30.0%
CCAAAGCTACTAAAAAATCT+AGG - chr5_1:8758128-8758147 Msa0715650:CDS 30.0%
! AGCATTTCAACAATGCTTTT+GGG + chr5_1:8758232-8758251 None:intergenic 30.0%
! AAGCATTTCAACAATGCTTT+TGG + chr5_1:8758233-8758252 None:intergenic 30.0%
TTTATTAACTGAGACTGATG+AGG - chr5_1:8758357-8758376 Msa0715650:intron 30.0%
TGAGGAGGAAGATAAATTAA+AGG - chr5_1:8758375-8758394 Msa0715650:intron 30.0%
GGAATAAAAATCCTCATTTC+TGG + chr5_1:8758698-8758717 None:intergenic 30.0%
GGAATGATAACACTGATAAA+AGG - chr5_1:8758924-8758943 Msa0715650:intron 30.0%
ATGATAACACTGATAAAAGG+GGG - chr5_1:8758927-8758946 Msa0715650:intron 30.0%
AAGAAGAAGCTATAGTAACA+TGG - chr5_1:8758972-8758991 Msa0715650:intron 30.0%
!! AGTGTTTTTGAGAGTTTTCA+GGG + chr5_1:8759294-8759313 None:intergenic 30.0%
!! AAGTGTTTTTGAGAGTTTTC+AGG + chr5_1:8759295-8759314 None:intergenic 30.0%
ATGACAAAGACGATTTCAAA+TGG - chr5_1:8759394-8759413 Msa0715650:intron 30.0%
!!! GCCAGTTGTTTTTCTATTAT+AGG - chr5_1:8759629-8759648 Msa0715650:intron 30.0%
!!! CTGTTGTTTTTCTCAAACAA+GGG - chr5_1:8759720-8759739 Msa0715650:five_prime_UTR 30.0%
! AATCTAAGAGTGTGTATTGC+AGG - chr5_1:8756859-8756878 Msa0715650:intron 35.0%
! ATCTAAGAGTGTGTATTGCA+GGG - chr5_1:8756860-8756879 Msa0715650:intron 35.0%
ATATTGCAGTTATAGCGTAG+CGG - chr5_1:8757164-8757183 Msa0715650:intron 35.0%
! ACTATAGCACTTTTGCATAG+TGG - chr5_1:8757261-8757280 Msa0715650:intron 35.0%
ATCGACAACATTAGTTACGT+TGG - chr5_1:8757318-8757337 Msa0715650:intron 35.0%
TATCGCAAAAAATAGTGCTC+TGG - chr5_1:8757598-8757617 Msa0715650:intron 35.0%
CAACACTGGAACATATGAAA+AGG - chr5_1:8757768-8757787 Msa0715650:CDS 35.0%
CTAATATGACTTTACATGGC+AGG - chr5_1:8758044-8758063 Msa0715650:intron 35.0%
! TTTTGCTGAGATTCAGTGTT+TGG + chr5_1:8758184-8758203 None:intergenic 35.0%
AGCTAAGGAGAAGTAATGAT+TGG - chr5_1:8758255-8758274 Msa0715650:CDS 35.0%
GTTAGATAAGAGAGAAAGAG+AGG + chr5_1:8758281-8758300 None:intergenic 35.0%
AATTAAAGGCTACCACTTCA+AGG - chr5_1:8758389-8758408 Msa0715650:intron 35.0%
TTCAAGGAAGAGAAAATCCA+AGG - chr5_1:8758405-8758424 Msa0715650:intron 35.0%
AAGAGAAAATCCAAGGATTC+AGG - chr5_1:8758412-8758431 Msa0715650:intron 35.0%
AGAGAAAATCCAAGGATTCA+GGG - chr5_1:8758413-8758432 Msa0715650:intron 35.0%
TTCAGAACTGCAAATCACAA+TGG + chr5_1:8758523-8758542 None:intergenic 35.0%
CCTTTCTTTCAAGAAATCCA+AGG + chr5_1:8758592-8758611 None:intergenic 35.0%
CCTTGGATTTCTTGAAAGAA+AGG - chr5_1:8758589-8758608 Msa0715650:intron 35.0%
!! TCTGAAAGTATTTCAGGGTT+TGG + chr5_1:8758900-8758919 None:intergenic 35.0%
!! CCTTCTCTGAAAGTATTTCA+GGG + chr5_1:8758905-8758924 None:intergenic 35.0%
CCTGAAATACTTTCAGAGAA+GGG - chr5_1:8758903-8758922 Msa0715650:intron 35.0%
ATGCATGATGGCACATAAAT+TGG - chr5_1:8759125-8759144 Msa0715650:intron 35.0%
TGCTCATATCTGAAAACTAG+TGG - chr5_1:8759193-8759212 Msa0715650:intron 35.0%
! TAGTGGCTTGCATATGTTTA+AGG - chr5_1:8759210-8759229 Msa0715650:intron 35.0%
!! TTAAGCTAGAGTGTTGCTAA+TGG - chr5_1:8759540-8759559 Msa0715650:intron 35.0%
GAAAAACAACAGGCATTTAC+AGG + chr5_1:8759712-8759731 None:intergenic 35.0%
! CCTTGTTTGAGAAAAACAAC+AGG + chr5_1:8759722-8759741 None:intergenic 35.0%
!!! CCTGTTGTTTTTCTCAAACA+AGG - chr5_1:8759719-8759738 Msa0715650:five_prime_UTR 35.0%
ATCAGAATCGTTGTCTGACA+TGG + chr5_1:8756703-8756722 None:intergenic 40.0%
! AGTTATAGCGTAGCGGAATT+TGG - chr5_1:8757171-8757190 Msa0715650:intron 40.0%
ATGTTGTCGATCGCAAACAA+CGG + chr5_1:8757309-8757328 None:intergenic 40.0%
GATAATCTCGGGTTTGAGTA+GGG - chr5_1:8757372-8757391 Msa0715650:intron 40.0%
AAATAACAGCTATAGTGGCG+CGG + chr5_1:8757739-8757758 None:intergenic 40.0%
TGAGAGATAGTGCTTATCTC+AGG - chr5_1:8757816-8757835 Msa0715650:CDS 40.0%
! ATGGGTTAAGATCCAATTGC+AGG - chr5_1:8757970-8757989 Msa0715650:CDS 40.0%
CATGAGTCCAAAATAAAGCC+AGG + chr5_1:8758000-8758019 None:intergenic 40.0%
CAAAAACCAAACACTGCTGT+GGG - chr5_1:8758199-8758218 Msa0715650:CDS 40.0%
TGTTGAAATGCTTGCAGCTA+AGG - chr5_1:8758240-8758259 Msa0715650:CDS 40.0%
ATTAACTGAGACTGATGAGG+AGG - chr5_1:8758360-8758379 Msa0715650:intron 40.0%
! GGATTTTCTCTTCCTTGAAG+TGG + chr5_1:8758404-8758423 None:intergenic 40.0%
!! GCTGGTTTGCTCACAATAAT+AGG + chr5_1:8758546-8758565 None:intergenic 40.0%
AAGGCAGTCTTTAAGCATTC+AGG + chr5_1:8758573-8758592 None:intergenic 40.0%
TGAATGCTTAAAGACTGCCT+TGG - chr5_1:8758572-8758591 Msa0715650:intron 40.0%
TTCAAAACAGCAGACGATCT+TGG + chr5_1:8758627-8758646 None:intergenic 40.0%
AAGTAGACGTAATGCTTGGT+TGG + chr5_1:8758655-8758674 None:intergenic 40.0%
TGGAAAGTAGACGTAATGCT+TGG + chr5_1:8758659-8758678 None:intergenic 40.0%
TTACGTCTACTTTCCAGTTC+CGG - chr5_1:8758663-8758682 Msa0715650:intron 40.0%
!!! AGATTTTTTTGGCCAAGGTG+AGG - chr5_1:8758731-8758750 Msa0715650:intron 40.0%
AGTATTTCAGGGTTTGGAGA+GGG + chr5_1:8758894-8758913 None:intergenic 40.0%
AAGTATTTCAGGGTTTGGAG+AGG + chr5_1:8758895-8758914 None:intergenic 40.0%
CCCTGAAATACTTTCAGAGA+AGG - chr5_1:8758902-8758921 Msa0715650:intron 40.0%
!! CCCTTCTCTGAAAGTATTTC+AGG + chr5_1:8758906-8758925 None:intergenic 40.0%
ATAACACTGATAAAAGGGGG+AGG - chr5_1:8758930-8758949 Msa0715650:intron 40.0%
TAACACTGATAAAAGGGGGA+GGG - chr5_1:8758931-8758950 Msa0715650:intron 40.0%
TTTATGTGCCATCATGCATC+AGG + chr5_1:8759124-8759143 None:intergenic 40.0%
!! CCTATCGACTTGTTGCTAAA+TGG + chr5_1:8759168-8759187 None:intergenic 40.0%
CCATTTAGCAACAAGTCGAT+AGG - chr5_1:8759165-8759184 Msa0715650:intron 40.0%
TTCTGTTTAGGGACTTCTGA+TGG - chr5_1:8759319-8759338 Msa0715650:intron 40.0%
GAATCAGAGACAAAGAAGGT+TGG + chr5_1:8759477-8759496 None:intergenic 40.0%
AGCTGAATCAGAGACAAAGA+AGG + chr5_1:8759481-8759500 None:intergenic 40.0%
AGGACAGGATATATAGGAAG+TGG - chr5_1:8759649-8759668 Msa0715650:CDS 40.0%
GCATTTACAGGCATTTGCAA+AGG + chr5_1:8759700-8759719 None:intergenic 40.0%
TTCAGCTGTGAATTCCTCAG+GGG + chr5_1:8756727-8756746 None:intergenic 45.0%
GTTCAGCTGTGAATTCCTCA+GGG + chr5_1:8756728-8756747 None:intergenic 45.0%
TGTTCAGCTGTGAATTCCTC+AGG + chr5_1:8756729-8756748 None:intergenic 45.0%
TGAGGAATTCACAGCTGAAC+AGG - chr5_1:8756728-8756747 Msa0715650:intron 45.0%
GGATAATCTCGGGTTTGAGT+AGG - chr5_1:8757371-8757390 Msa0715650:intron 45.0%
GGTTGGCATTAGGTGCTTAA+TGG - chr5_1:8757491-8757510 Msa0715650:intron 45.0%
! ATTATGGGCTAACCGCTGAA+TGG - chr5_1:8757860-8757879 Msa0715650:intron 45.0%
AGATGGGTGTAGCTAGCATA+TGG - chr5_1:8757886-8757905 Msa0715650:intron 45.0%
!!! AGGCTCTCCTGGCTTTATTT+TGG - chr5_1:8757990-8758009 Msa0715650:CDS 45.0%
AGAAAGAACGTCGGCGAAAA+TGG - chr5_1:8758080-8758099 Msa0715650:intron 45.0%
GAAAGAACGTCGGCGAAAAT+GGG - chr5_1:8758081-8758100 Msa0715650:intron 45.0%
!! TTAGTAGCTTTGGATGGTCG+AGG + chr5_1:8758121-8758140 None:intergenic 45.0%
GCAAAAACCAAACACTGCTG+TGG - chr5_1:8758198-8758217 Msa0715650:CDS 45.0%
AGAAATCCCACAGCAGTGTT+TGG + chr5_1:8758208-8758227 None:intergenic 45.0%
! TCCAAGGATTCAGGGTTAGT+AGG - chr5_1:8758421-8758440 Msa0715650:intron 45.0%
! CCAAGGATTCAGGGTTAGTA+GGG - chr5_1:8758422-8758441 Msa0715650:intron 45.0%
TTTAAGCATTCAGGAGGAGC+TGG + chr5_1:8758564-8758583 None:intergenic 45.0%
GCAGTCTTTAAGCATTCAGG+AGG + chr5_1:8758570-8758589 None:intergenic 45.0%
TACGTCTACTTTCCAGTTCC+GGG - chr5_1:8758664-8758683 Msa0715650:intron 45.0%
!! TCATTTCTGGCGTATGATCC+CGG + chr5_1:8758685-8758704 None:intergenic 45.0%
ACAGAAGCAGCAAAGACGAT+TGG + chr5_1:8758784-8758803 None:intergenic 45.0%
! ATCGTCTTTGCTGCTTCTGT+CGG - chr5_1:8758784-8758803 Msa0715650:intron 45.0%
TTTGGAGAGGGAGTTCTATG+TGG + chr5_1:8758882-8758901 None:intergenic 45.0%
AACACTGATAAAAGGGGGAG+GGG - chr5_1:8758932-8758951 Msa0715650:intron 45.0%
ATGGTCAACCTGATGCATGA+TGG - chr5_1:8759113-8759132 Msa0715650:intron 45.0%
TTGGAGCCACTTCTGTTCTT+GGG - chr5_1:8759254-8759273 Msa0715650:intron 45.0%
GAGGACTACTTCTTTGTCCA+GGG - chr5_1:8759353-8759372 Msa0715650:intron 45.0%
TTTGTCCAGGGTTTGTGATG+AGG - chr5_1:8759365-8759384 Msa0715650:intron 45.0%
CAAATCCTCATCACAAACCC+TGG + chr5_1:8759373-8759392 None:intergenic 45.0%
CAGGGTTTGTGATGAGGATT+TGG - chr5_1:8759371-8759390 Msa0715650:intron 45.0%
TTGCAGAGTTCTTGTCTTCC+TGG - chr5_1:8759442-8759461 Msa0715650:intron 45.0%
TCTTGTCTTCCTGGTGATCA+AGG - chr5_1:8759451-8759470 Msa0715650:CDS 45.0%
CTTTGTCTCTGATTCAGCTC+TGG - chr5_1:8759482-8759501 Msa0715650:intron 45.0%
!! AAAAATCTATAAATTTATAA+GGG + chr5_1:8758719-8758738 None:intergenic 5.0%
!! AAAAAATCTATAAATTTATA+AGG + chr5_1:8758720-8758739 None:intergenic 5.0%
!!! TATAAATTTATAGATTTTTT+TGG - chr5_1:8758720-8758739 Msa0715650:intron 5.0%
CAATCTTGATGTGGCTGCTC+AGG - chr5_1:8757127-8757146 Msa0715650:intron 50.0%
TAACCGCTGAATGGCACAGA+TGG - chr5_1:8757869-8757888 Msa0715650:intron 50.0%
AACCGCTGAATGGCACAGAT+GGG - chr5_1:8757870-8757889 Msa0715650:intron 50.0%
CCCTACTAACCCTGAATCCT+TGG + chr5_1:8758425-8758444 None:intergenic 50.0%
GGGATCATACGCCAGAAATG+AGG - chr5_1:8758684-8758703 Msa0715650:intron 50.0%
GTTGGAGCCACTTCTGTTCT+TGG - chr5_1:8759253-8759272 Msa0715650:intron 50.0%
CTTCAGCCCAAGAACAGAAG+TGG + chr5_1:8759263-8759282 None:intergenic 50.0%
!! TGAGAGTTTTCAGGGCTGCT+CGG + chr5_1:8759286-8759305 None:intergenic 50.0%
! ACTTCTGATGGCGAATGCGT+CGG - chr5_1:8759331-8759350 Msa0715650:intron 50.0%
GGAGGACTACTTCTTTGTCC+AGG - chr5_1:8759352-8759371 Msa0715650:intron 50.0%
AGTGGTTTCACTCTCAGCTG+AGG - chr5_1:8759667-8759686 Msa0715650:exon 50.0%
GTGGTTTCACTCTCAGCTGA+GGG - chr5_1:8759668-8759687 Msa0715650:exon 50.0%
CAACGATTCTGATGCCCCTG+AGG - chr5_1:8756710-8756729 Msa0715650:intron 55.0%
! CACCCATCTGTGCCATTCAG+CGG + chr5_1:8757875-8757894 None:intergenic 55.0%
GATCCAATTGCAGGCTCTCC+TGG - chr5_1:8757979-8757998 Msa0715650:CDS 55.0%
AAGCCAGGAGAGCCTGCAAT+TGG + chr5_1:8757985-8758004 None:intergenic 55.0%
GCAACATTGACGCCTCACCT+TGG + chr5_1:8758746-8758765 None:intergenic 55.0%
! TGCTGCTTCTGTCGGTGTAC+TGG - chr5_1:8758792-8758811 Msa0715650:intron 55.0%
ACTGATAAAAGGGGGAGGGG+TGG - chr5_1:8758935-8758954 Msa0715650:intron 55.0%
!! GAAGGTTGGCCTTGATCACC+AGG + chr5_1:8759463-8759482 None:intergenic 55.0%
CTGGCGTATGATCCCGGAAC+TGG + chr5_1:8758679-8758698 None:intergenic 60.0%
! TCTGATGGCGAATGCGTCGG+AGG - chr5_1:8759334-8759353 Msa0715650:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 8756628 8759753 8756628 ID=Msa0715650;Name=Msa0715650
chr5_1 mRNA 8756628 8759753 8756628 ID=Msa0715650-mRNA-1;Parent=Msa0715650;Name=Msa0715650-mRNA-1;_AED=0.21;_eAED=0.21;_QI=74|1|1|1|0.8|0.66|6|141|184
chr5_1 exon 8756628 8756725 8756628 ID=Msa0715650-mRNA-1:exon:3629;Parent=Msa0715650-mRNA-1
chr5_1 exon 8757634 8757845 8757634 ID=Msa0715650-mRNA-1:exon:3628;Parent=Msa0715650-mRNA-1
chr5_1 exon 8757947 8758030 8757947 ID=Msa0715650-mRNA-1:exon:3627;Parent=Msa0715650-mRNA-1
chr5_1 exon 8758115 8758315 8758115 ID=Msa0715650-mRNA-1:exon:3626;Parent=Msa0715650-mRNA-1
chr5_1 exon 8759448 8759500 8759448 ID=Msa0715650-mRNA-1:exon:3625;Parent=Msa0715650-mRNA-1
chr5_1 exon 8759632 8759753 8759632 ID=Msa0715650-mRNA-1:exon:3624;Parent=Msa0715650-mRNA-1
chr5_1 five_prime_UTR 8759680 8759753 8759680 ID=Msa0715650-mRNA-1:five_prime_utr;Parent=Msa0715650-mRNA-1
chr5_1 CDS 8759632 8759679 8759632 ID=Msa0715650-mRNA-1:cds;Parent=Msa0715650-mRNA-1
chr5_1 CDS 8759448 8759500 8759448 ID=Msa0715650-mRNA-1:cds;Parent=Msa0715650-mRNA-1
chr5_1 CDS 8758115 8758315 8758115 ID=Msa0715650-mRNA-1:cds;Parent=Msa0715650-mRNA-1
chr5_1 CDS 8757947 8758030 8757947 ID=Msa0715650-mRNA-1:cds;Parent=Msa0715650-mRNA-1
chr5_1 CDS 8757677 8757845 8757677 ID=Msa0715650-mRNA-1:cds;Parent=Msa0715650-mRNA-1
chr5_1 three_prime_UTR 8757634 8757676 8757634 ID=Msa0715650-mRNA-1:three_prime_utr;Parent=Msa0715650-mRNA-1
chr5_1 three_prime_UTR 8756628 8756725 8756628 ID=Msa0715650-mRNA-1:three_prime_utr;Parent=Msa0715650-mRNA-1
Gene Sequence

>Msa0715650

ATGTCAGACAACGATTCTGATGCCCCTGAGGAATTCACAGCTGAACAGGGTATTCAGCTAGACGAAGAGATTCGAAAGATTAAAAAGGAAAACAAAATCAGGGTTAATATTGAAGAGAAAGAACGTCGGCGAAAATGGGCTCAAAATTTAACACCTCGACCATCCAAAGCTACTAAAAAATCTAGGGACGCATCAAACACTGAATCTGAGCAAGAACCAAACACTGAATCTCAGCAAAAACCAAACACTGCTGTGGGATTTCTTCCCAAAAGCATTGTTGAAATGCTTGCAGCTAAGGAGAAAAAAAATTTATTAACTGAGACTGATGAGGAGGAAGATAAATTAAAGGCTACCACTTCAAGGAAGAGAAAATCCAAGGATTCAGGTTCTGAACCTATTATTGTGAGCAAACCAGCTCCTCCTGAATGCTTAAAGACTGCCTTGGATTTCTTGAAAGAAAGGAAAATGTCAGTTCCAAGATCGTCTGCTGTTTTGAAGAATTCCAACCAAGCATTACGTCTACTTTCCAGTTCCGGGATCATACGCCAGAAATGA

Protein sequence

>Msa0715650

MSDNDSDAPEEFTAEQGIQLDEEIRKIKKENKIRVNIEEKERRRKWAQNLTPRPSKATKKSRDASNTESEQEPNTESQQKPNTAVGFLPKSIVEMLAAKEKKNLLTETDEEEDKLKATTSRKRKSKDSGSEPIIVSKPAPPECLKTALDFLKERKMSVPRSSAVLKNSNQALRLLSSSGIIRQK*