Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859380 | RHN57280.1 | 95.707 | 559 | 24 | 0 | 1 | 559 | 33 | 591 | 0.0 | 1085 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859380 | sp|Q9M219|MTEFH_ARATH | 25.989 | 531 | 367 | 11 | 42 | 558 | 9 | 527 | 3.25e-46 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859380 | A0A396HVA9 | 95.707 | 559 | 24 | 0 | 1 | 559 | 33 | 591 | 0.0 | 1085 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0859380 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010680 | Msa0859380 | 0.804462 | 2.135725e-49 | -8.615850e-47 |
| Msa0036160 | Msa0859380 | 0.844263 | 8.426635e-59 | -8.615850e-47 |
| Msa0738990 | Msa0859380 | 0.930761 | 1.021949e-93 | -8.615850e-47 |
| Msa0772480 | Msa0859380 | 0.802691 | 4.974958e-49 | -8.615850e-47 |
| Msa0795920 | Msa0859380 | 0.834337 | 3.177918e-56 | -8.615850e-47 |
| Msa0798440 | Msa0859380 | 0.803048 | 4.199126e-49 | -8.615850e-47 |
| Msa0819480 | Msa0859380 | 0.843279 | 1.544563e-58 | -8.615850e-47 |
| Msa0183370 | Msa0859380 | 0.800041 | 1.735967e-48 | -8.615850e-47 |
| Msa0358170 | Msa0859380 | 0.815050 | 1.127567e-51 | -8.615850e-47 |
| Msa0580420 | Msa0859380 | 0.822975 | 1.776031e-53 | -8.615850e-47 |
| Msa0859380 | Msa0870150 | 0.819601 | 1.065995e-52 | -8.615850e-47 |
| Msa0859380 | Msa1174870 | 0.815300 | 9.921553e-52 | -8.615850e-47 |
| Msa0859380 | Msa1234690 | 0.818964 | 1.489074e-52 | -8.615850e-47 |
| Msa0859380 | Msa1234730 | 0.812236 | 4.692819e-51 | -8.615850e-47 |
| Msa0859380 | Msa1262920 | 0.813166 | 2.936751e-51 | -8.615850e-47 |
| Msa0859380 | Msa1302100 | 0.836831 | 7.431637e-57 | -8.615850e-47 |
| Msa0859380 | Msa1315110 | 0.812027 | 5.212878e-51 | -8.615850e-47 |
| Msa0859380 | Msa1427830 | 0.802313 | 5.951694e-49 | -8.615850e-47 |
| Msa0859380 | Msa1437170 | 0.907879 | 3.142648e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859380 | MtrunA17_Chr5g0438661 | 95.707 | 559 | 24 | 0 | 1 | 559 | 33 | 591 | 0.0 | 1085 |
| Msa0859380 | MtrunA17_Chr8g0335121 | 26.136 | 528 | 363 | 11 | 48 | 558 | 18 | 535 | 2.10e-48 | 177 |
| Msa0859380 | MtrunA17_Chr7g0258521 | 36.655 | 281 | 149 | 8 | 34 | 306 | 15 | 274 | 1.53e-40 | 154 |
| Msa0859380 | MtrunA17_Chr7g0258521 | 37.349 | 166 | 102 | 2 | 390 | 554 | 274 | 438 | 2.55e-25 | 109 |
| Msa0859380 | MtrunA17_Chr7g0249711 | 24.532 | 534 | 376 | 11 | 46 | 559 | 30 | 556 | 1.68e-40 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859380 | AT4G19650.2 | 46.341 | 492 | 262 | 2 | 68 | 559 | 79 | 568 | 3.08e-156 | 462 |
| Msa0859380 | AT4G19650.1 | 44.130 | 494 | 272 | 3 | 68 | 559 | 60 | 551 | 1.21e-142 | 426 |
| Msa0859380 | AT5G45113.1 | 42.931 | 389 | 216 | 2 | 168 | 554 | 1 | 385 | 1.12e-103 | 320 |
| Msa0859380 | AT5G06810.1 | 34.411 | 526 | 341 | 3 | 35 | 558 | 35 | 558 | 1.90e-97 | 310 |
| Msa0859380 | AT5G06811.1 | 34.191 | 544 | 338 | 6 | 22 | 558 | 24 | 554 | 3.56e-92 | 296 |
| Msa0859380 | AT3G60400.1 | 25.989 | 531 | 367 | 11 | 42 | 558 | 9 | 527 | 3.31e-47 | 174 |
| Msa0859380 | AT5G45115.2 | 47.692 | 65 | 34 | 0 | 57 | 121 | 58 | 122 | 3.31e-11 | 61.6 |
| Msa0859380 | AT5G45115.1 | 47.692 | 65 | 34 | 0 | 57 | 121 | 58 | 122 | 3.31e-11 | 61.6 |
Find 99 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAGAAAGAGCGGGAATT+TGG | 0.207920 | 5_4:-57720256 | None:intergenic |
| TTGAGCAAACATTCGATAAA+AGG | 0.208563 | 5_4:+57721196 | Msa0859380:CDS |
| TTGTGACCCGCTTATTAAAT+TGG | 0.211062 | 5_4:+57721348 | Msa0859380:CDS |
| AAAAGGTTCAAATTCGTTAA+TGG | 0.216359 | 5_4:-57720483 | None:intergenic |
| ATTTCAAGATTATGAAGATT+TGG | 0.259240 | 5_4:+57720703 | Msa0859380:CDS |
| CTTGCTGAAACTAGGGTATA+TGG | 0.266036 | 5_4:+57721384 | Msa0859380:CDS |
| TTTGAATTACATTTCTCTTC+AGG | 0.267697 | 5_4:-57721552 | None:intergenic |
| GAATTGGGATTGAGAGTAAA+TGG | 0.269440 | 5_4:+57720828 | Msa0859380:CDS |
| ATTCTGCATAAATCAGCTTT+TGG | 0.277612 | 5_4:-57721250 | None:intergenic |
| CTTGATTGGTTGAAAAGAAT+TGG | 0.282428 | 5_4:+57720812 | Msa0859380:CDS |
| CTCTTCAGGATTAGAATCTT+AGG | 0.284996 | 5_4:-57721538 | None:intergenic |
| TTTCAAGATTATGAAGATTT+GGG | 0.302755 | 5_4:+57720704 | Msa0859380:CDS |
| TCCATTGGAGCTTATTAGTT+TGG | 0.304432 | 5_4:+57721285 | Msa0859380:CDS |
| GCATAGTTCTGTGGTTCTGC+TGG | 0.306000 | 5_4:+57723246 | Msa0859380:CDS |
| AAAGGTTCAAATTCGTTAAT+GGG | 0.316048 | 5_4:-57720482 | None:intergenic |
| GTGGCGCGTTTGATGTAAAT+TGG | 0.317940 | 5_4:-57720278 | None:intergenic |
| AGGAATTAATCACACGGAAT+TGG | 0.320142 | 5_4:+57720517 | Msa0859380:CDS |
| AGGAAGCTGTTCTTGTTTCT+AGG | 0.327574 | 5_4:+57720998 | Msa0859380:CDS |
| ATCGTCAGGGATGTTGATTT+TGG | 0.327979 | 5_4:-57720417 | None:intergenic |
| TGTTTGTTGTCCTTTGCTTT+TGG | 0.333098 | 5_4:+57720757 | Msa0859380:CDS |
| TGGAGAAAGAGCGGGAATTT+GGG | 0.341540 | 5_4:-57720255 | None:intergenic |
| ATCTTCGCCATTCGATTCCT+TGG | 0.344090 | 5_4:-57720626 | None:intergenic |
| AGAGCGGTTTGTAAGGAGTT+AGG | 0.349298 | 5_4:+57721223 | Msa0859380:CDS |
| AGTTTGTTGTTGTTCTTGAT+TGG | 0.351137 | 5_4:+57720798 | Msa0859380:CDS |
| TTTAATAAGCGGGTCACAAT+AGG | 0.351904 | 5_4:-57721344 | None:intergenic |
| TTTCATGTATTGTGTTATCA+TGG | 0.353729 | 5_4:+57720599 | Msa0859380:CDS |
| AGGGAGAGGTGATCAGTTAC+AGG | 0.358936 | 5_4:+57721447 | Msa0859380:CDS |
| TTGATTGGTTGAAAAGAATT+GGG | 0.361761 | 5_4:+57720813 | Msa0859380:CDS |
| CAAAGAAAATAACAACCTTT+AGG | 0.370775 | 5_4:-57720551 | None:intergenic |
| TATCTCACAAGACATTCTAT+TGG | 0.371889 | 5_4:-57721610 | None:intergenic |
| AAATGGAAGAAGATGGGTTT+TGG | 0.374297 | 5_4:-57720196 | None:intergenic |
| GAAGCAGTAAAATTGTTTCC+AGG | 0.374900 | 5_4:+57721427 | Msa0859380:CDS |
| CTGCCTCGTAGAAGCTGGTT+TGG | 0.378167 | 5_4:+57721480 | Msa0859380:CDS |
| GGTGCAAGAAATTGGGGTTT+TGG | 0.381606 | 5_4:-57720175 | None:intergenic |
| TTGAAAGAAATGGAAGAAGA+TGG | 0.405404 | 5_4:-57720203 | None:intergenic |
| TGGGTATGGAAATGGAGTTT+TGG | 0.409236 | 5_4:+57720673 | Msa0859380:CDS |
| TCTAGGTCGGTTTATTAAGT+CGG | 0.428427 | 5_4:+57721015 | Msa0859380:CDS |
| ATCTCACAAGACATTCTATT+GGG | 0.431195 | 5_4:-57721609 | None:intergenic |
| AGGTTATAGAGCGGTTTGTA+AGG | 0.431374 | 5_4:+57721216 | Msa0859380:CDS |
| CGGCTTTCTTGCTGAAACTA+GGG | 0.439594 | 5_4:+57721377 | Msa0859380:CDS |
| GCTTATTAAATTGGAGAAAA+CGG | 0.440222 | 5_4:+57721357 | Msa0859380:CDS |
| CTAGGTCGGTTTATTAAGTC+GGG | 0.441636 | 5_4:+57721016 | Msa0859380:CDS |
| CATAGTTCTGTGGTTCTGCT+GGG | 0.448307 | 5_4:+57723247 | Msa0859380:CDS |
| TGATCAGTTACAGGAGAGAT+TGG | 0.453405 | 5_4:+57721456 | Msa0859380:CDS |
| TTCATGTATTGTGTTATCAT+GGG | 0.455291 | 5_4:+57720600 | Msa0859380:CDS |
| AGACCTTCCAACAACAAATT+CGG | 0.457193 | 5_4:-57720971 | None:intergenic |
| TGAAAGAAATGGAAGAAGAT+GGG | 0.458028 | 5_4:-57720202 | None:intergenic |
| ACACTTACTCGACAATATAT+CGG | 0.459640 | 5_4:-57721080 | None:intergenic |
| CATATGTATGATTTGTTCAA+GGG | 0.474363 | 5_4:+57720944 | Msa0859380:CDS |
| ACGGCTTTCTTGCTGAAACT+AGG | 0.474798 | 5_4:+57721376 | Msa0859380:CDS |
| TTCAATGTATGAGTGGTTGA+AGG | 0.494343 | 5_4:+57721678 | Msa0859380:CDS |
| ACATATGTATGATTTGTTCA+AGG | 0.498470 | 5_4:+57720943 | Msa0859380:CDS |
| GATCCGAATTTGTTGTTGGA+AGG | 0.498949 | 5_4:+57720968 | Msa0859380:CDS |
| TTAGGGTTGAAGAGAAAGAA+TGG | 0.499067 | 5_4:-57720122 | None:intergenic |
| AGCTGTTCTTGTTTCTAGGT+CGG | 0.500050 | 5_4:+57721002 | Msa0859380:CDS |
| TTGGACTGCCTCGTAGAAGC+TGG | 0.500999 | 5_4:+57721475 | Msa0859380:CDS |
| CTTCTAAACAGAAACATAAG+AGG | 0.503889 | 5_4:+57721308 | Msa0859380:CDS |
| CTAGTTCTAGCACTTATAGC+TGG | 0.504313 | 5_4:+57720867 | Msa0859380:CDS |
| TGTATGAGTGGTTGAAGGAA+AGG | 0.504426 | 5_4:+57721683 | Msa0859380:CDS |
| CTCGGCTGTGGTGATTCATG+CGG | 0.504889 | 5_4:+57723274 | Msa0859380:CDS |
| ATTTGTTGTTGGAAGGTCTA+GGG | 0.509859 | 5_4:+57720975 | Msa0859380:CDS |
| TATGGAAAACTCTGAGGAGA+TGG | 0.511741 | 5_4:+57721402 | Msa0859380:CDS |
| AATTTGTTGTTGGAAGGTCT+AGG | 0.516290 | 5_4:+57720974 | Msa0859380:CDS |
| GTAAAATTGTTTCCAGGGAG+AGG | 0.518160 | 5_4:+57721433 | Msa0859380:CDS |
| TGTGTTATCATGGGGTTCCA+AGG | 0.527307 | 5_4:+57720609 | Msa0859380:CDS |
| GTAAATTGGTGGAGAAAGAG+CGG | 0.528173 | 5_4:-57720264 | None:intergenic |
| GAGTTCGAGGCAGGAGTGCA+AGG | 0.534215 | 5_4:+57722680 | Msa0859380:CDS |
| TCATGTATTGTGTTATCATG+GGG | 0.535058 | 5_4:+57720601 | Msa0859380:CDS |
| TAGGGTTGAAGAGAAAGAAT+GGG | 0.541091 | 5_4:-57720121 | None:intergenic |
| TCGGCTGTGGTGATTCATGC+GGG | 0.542484 | 5_4:+57723275 | Msa0859380:CDS |
| AAGCAGTAAAATTGTTTCCA+GGG | 0.543083 | 5_4:+57721428 | Msa0859380:CDS |
| ATGAGGAAATTGATGAAATG+TGG | 0.545861 | 5_4:-57720392 | None:intergenic |
| GCCAAACTAATAAGCTCCAA+TGG | 0.546201 | 5_4:-57721286 | None:intergenic |
| AATCATAAACGATGATCCAT+TGG | 0.546725 | 5_4:+57721270 | Msa0859380:CDS |
| ATATGAAACTATGGTACTCA+AGG | 0.555816 | 5_4:-57721728 | None:intergenic |
| AGAAAGAGCGGGAATTTGGG+TGG | 0.556121 | 5_4:-57720252 | None:intergenic |
| TTGTAGCACTGCGATTAGAA+TGG | 0.562098 | 5_4:+57721504 | Msa0859380:CDS |
| TGCAGGTGCAGATATGCCAT+TGG | 0.563395 | 5_4:+57722614 | Msa0859380:intron |
| TGTAACTGATCACCTCTCCC+TGG | 0.577413 | 5_4:-57721445 | None:intergenic |
| TAAATTGGTGGAGAAAGAGC+GGG | 0.577774 | 5_4:-57720263 | None:intergenic |
| CAGAAACATAAGAGGAGTGG+AGG | 0.579021 | 5_4:+57721316 | Msa0859380:CDS |
| GAAAGTGAAAGAGTTCCCAT+TGG | 0.599604 | 5_4:-57720083 | None:intergenic |
| AAACAGAAACATAAGAGGAG+TGG | 0.607869 | 5_4:+57721313 | Msa0859380:CDS |
| TTGTTTGAAGCATAGTTCTG+TGG | 0.609227 | 5_4:+57723237 | Msa0859380:CDS |
| TGTTGTTGGAAGGTCTAGGG+AGG | 0.611420 | 5_4:+57720978 | Msa0859380:CDS |
| GCGCGTTTGATGTAAATTGG+TGG | 0.612365 | 5_4:-57720275 | None:intergenic |
| TTCGATAAAAGGTTATAGAG+CGG | 0.623688 | 5_4:+57721207 | Msa0859380:CDS |
| TTTCTGCACAGATGATCCAA+TGG | 0.629093 | 5_4:-57722630 | None:intergenic |
| TGGGGTTCCAAGGAATCGAA+TGG | 0.629907 | 5_4:+57720619 | Msa0859380:CDS |
| AGAAACATAAGAGGAGTGGA+GGG | 0.636056 | 5_4:+57721317 | Msa0859380:CDS |
| ATATGTATGATTTGTTCAAG+GGG | 0.636636 | 5_4:+57720945 | Msa0859380:CDS |
| ACATCACCAACCAAAAGCAA+AGG | 0.637648 | 5_4:-57720767 | None:intergenic |
| CAAGAGTTTCAATGTATGAG+TGG | 0.645039 | 5_4:+57721671 | Msa0859380:CDS |
| AAAATCAACATCCCTGACGA+TGG | 0.646277 | 5_4:+57720419 | Msa0859380:CDS |
| TATATTGTCGAGTAAGTGTG+TGG | 0.647992 | 5_4:+57721084 | Msa0859380:CDS |
| AGGGTATATGGAAAACTCTG+AGG | 0.686033 | 5_4:+57721396 | Msa0859380:CDS |
| TATGTATGATTTGTTCAAGG+GGG | 0.703088 | 5_4:+57720946 | Msa0859380:CDS |
| GAGTTTAGGAATTAATCACA+CGG | 0.713083 | 5_4:+57720511 | Msa0859380:CDS |
| AATCCAAACCAGCTTCTACG+AGG | 0.736492 | 5_4:-57721483 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAAAATCTTTTTC+GGG | + | chr5_4:57722349-57722368 | Msa0859380:intron | 10.0% |
| !!! | TTTTTTGTATAATATTCGAA+TGG | + | chr5_4:57721129-57721148 | Msa0859380:CDS | 15.0% |
| !!! | TTTTTCATTATATGAAACTA+TGG | - | chr5_4:57721740-57721759 | None:intergenic | 15.0% |
| !! | TAGTTTCATATAATGAAAAA+CGG | + | chr5_4:57721740-57721759 | Msa0859380:CDS | 15.0% |
| !! | AATTTAGATTATATATGCTT+AGG | + | chr5_4:57722383-57722402 | Msa0859380:intron | 15.0% |
| !! | ATTTCAAGATTATGAAGATT+TGG | + | chr5_4:57720703-57720722 | Msa0859380:CDS | 20.0% |
| !! | TTTCAAGATTATGAAGATTT+GGG | + | chr5_4:57720704-57720723 | Msa0859380:CDS | 20.0% |
| !! | GATTTCTTAAAAAACACTTT+AGG | + | chr5_4:57721583-57721602 | Msa0859380:CDS | 20.0% |
| !! | ACAAAATTTGATATCATGTA+AGG | - | chr5_4:57721858-57721877 | None:intergenic | 20.0% |
| !! | ACATAAATAACTTCAACTTA+TGG | + | chr5_4:57722309-57722328 | Msa0859380:intron | 20.0% |
| !! | CATAAATAACTTCAACTTAT+GGG | + | chr5_4:57722310-57722329 | Msa0859380:intron | 20.0% |
| !! | ATTGAAAAAATCTGATGAAA+AGG | - | chr5_4:57723068-57723087 | None:intergenic | 20.0% |
| !!! | GGTTGAATTTTTGAAAGAAA+TGG | - | chr5_4:57720216-57720235 | None:intergenic | 25.0% |
| ! | AAAGGTTCAAATTCGTTAAT+GGG | - | chr5_4:57720485-57720504 | None:intergenic | 25.0% |
| ! | AAAAGGTTCAAATTCGTTAA+TGG | - | chr5_4:57720486-57720505 | None:intergenic | 25.0% |
| !! | ATTCCTAAACTCTCTAAAAA+AGG | - | chr5_4:57720503-57720522 | None:intergenic | 25.0% |
| ! | TTGGAAAAATTTCTACCTAA+AGG | + | chr5_4:57720536-57720555 | Msa0859380:CDS | 25.0% |
| ! | CAAAGAAAATAACAACCTTT+AGG | - | chr5_4:57720554-57720573 | None:intergenic | 25.0% |
| ! | TTTCATGTATTGTGTTATCA+TGG | + | chr5_4:57720599-57720618 | Msa0859380:CDS | 25.0% |
| ! | TTCATGTATTGTGTTATCAT+GGG | + | chr5_4:57720600-57720619 | Msa0859380:CDS | 25.0% |
| !! | TTGATTGGTTGAAAAGAATT+GGG | + | chr5_4:57720813-57720832 | Msa0859380:CDS | 25.0% |
| !!! | TTTAGAGTTTTTTCATCAAG+TGG | + | chr5_4:57720907-57720926 | Msa0859380:CDS | 25.0% |
| !!! | TTAGAGTTTTTTCATCAAGT+GGG | + | chr5_4:57720908-57720927 | Msa0859380:CDS | 25.0% |
| !!! | ACATATGTATGATTTGTTCA+AGG | + | chr5_4:57720943-57720962 | Msa0859380:CDS | 25.0% |
| !!! | CATATGTATGATTTGTTCAA+GGG | + | chr5_4:57720944-57720963 | Msa0859380:CDS | 25.0% |
| !!! | ATATGTATGATTTGTTCAAG+GGG | + | chr5_4:57720945-57720964 | Msa0859380:CDS | 25.0% |
| !! | TTTTCTCCAATTTAATAAGC+GGG | - | chr5_4:57721357-57721376 | None:intergenic | 25.0% |
| !! | GTTTTCTCCAATTTAATAAG+CGG | - | chr5_4:57721358-57721377 | None:intergenic | 25.0% |
| ! | GCTTATTAAATTGGAGAAAA+CGG | + | chr5_4:57721357-57721376 | Msa0859380:CDS | 25.0% |
| ! | TTTGAATTACATTTCTCTTC+AGG | - | chr5_4:57721555-57721574 | None:intergenic | 25.0% |
| !! | ACCTTTAAAAAGTAAGTACA+GGG | - | chr5_4:57721912-57721931 | None:intergenic | 25.0% |
| !! | TACCTTTAAAAAGTAAGTAC+AGG | - | chr5_4:57721913-57721932 | None:intergenic | 25.0% |
| !! | TGACTATTACTACTGATTAT+TGG | - | chr5_4:57722113-57722132 | None:intergenic | 25.0% |
| ! | CAATAGATAAAGGATAACAA+TGG | - | chr5_4:57722138-57722157 | None:intergenic | 25.0% |
| TGAAAGAAATGGAAGAAGAT+GGG | - | chr5_4:57720205-57720224 | None:intergenic | 30.0% | |
| TTGAAAGAAATGGAAGAAGA+TGG | - | chr5_4:57720206-57720225 | None:intergenic | 30.0% | |
| ATGAGGAAATTGATGAAATG+TGG | - | chr5_4:57720395-57720414 | None:intergenic | 30.0% | |
| !!! | GAACCTTTTTTAGAGAGTTT+AGG | + | chr5_4:57720497-57720516 | Msa0859380:CDS | 30.0% |
| GAGTTTAGGAATTAATCACA+CGG | + | chr5_4:57720511-57720530 | Msa0859380:CDS | 30.0% | |
| TCATGTATTGTGTTATCATG+GGG | + | chr5_4:57720601-57720620 | Msa0859380:CDS | 30.0% | |
| !!! | GAAATTTTTGGGTATGGAAA+TGG | + | chr5_4:57720665-57720684 | Msa0859380:CDS | 30.0% |
| !! | AGTTTGTTGTTGTTCTTGAT+TGG | + | chr5_4:57720798-57720817 | Msa0859380:CDS | 30.0% |
| ! | CTTGATTGGTTGAAAAGAAT+TGG | + | chr5_4:57720812-57720831 | Msa0859380:CDS | 30.0% |
| !! | TATGTATGATTTGTTCAAGG+GGG | + | chr5_4:57720946-57720965 | Msa0859380:CDS | 30.0% |
| ACACTTACTCGACAATATAT+CGG | - | chr5_4:57721083-57721102 | None:intergenic | 30.0% | |
| TTGAGCAAACATTCGATAAA+AGG | + | chr5_4:57721196-57721215 | Msa0859380:CDS | 30.0% | |
| TTCGATAAAAGGTTATAGAG+CGG | + | chr5_4:57721207-57721226 | Msa0859380:CDS | 30.0% | |
| ! | ATTCTGCATAAATCAGCTTT+TGG | - | chr5_4:57721253-57721272 | None:intergenic | 30.0% |
| AATCATAAACGATGATCCAT+TGG | + | chr5_4:57721270-57721289 | Msa0859380:CDS | 30.0% | |
| CTTCTAAACAGAAACATAAG+AGG | + | chr5_4:57721308-57721327 | Msa0859380:CDS | 30.0% | |
| AAGCAGTAAAATTGTTTCCA+GGG | + | chr5_4:57721428-57721447 | Msa0859380:CDS | 30.0% | |
| ATCTCACAAGACATTCTATT+GGG | - | chr5_4:57721612-57721631 | None:intergenic | 30.0% | |
| TATCTCACAAGACATTCTAT+TGG | - | chr5_4:57721613-57721632 | None:intergenic | 30.0% | |
| !! | ATACCCAACATACTTTTTAC+AGG | + | chr5_4:57721630-57721649 | Msa0859380:CDS | 30.0% |
| ATATGAAACTATGGTACTCA+AGG | - | chr5_4:57721731-57721750 | None:intergenic | 30.0% | |
| !!! | ACCCTGTACTTACTTTTTAA+AGG | + | chr5_4:57721908-57721927 | Msa0859380:intron | 30.0% |
| ! | AGACAGCTTATTTCTTTGAA+AGG | - | chr5_4:57721943-57721962 | None:intergenic | 30.0% |
| TCAAAGAAATAAGCTGTCTT+TGG | + | chr5_4:57721944-57721963 | Msa0859380:intron | 30.0% | |
| ! | GTTTTTCTTCTTTCAAACTC+AGG | + | chr5_4:57722052-57722071 | Msa0859380:intron | 30.0% |
| GTTATCCTTTATCTATTGAG+TGG | + | chr5_4:57722140-57722159 | Msa0859380:intron | 30.0% | |
| ! | CATTTACATGTTTTTCTCCT+AGG | + | chr5_4:57722254-57722273 | Msa0859380:intron | 30.0% |
| TATCATATTGTCAAACTCCT+AGG | - | chr5_4:57722274-57722293 | None:intergenic | 30.0% | |
| TAGGAGTTTGACAATATGAT+AGG | + | chr5_4:57722273-57722292 | Msa0859380:intron | 30.0% | |
| TAGGGTTGAAGAGAAAGAAT+GGG | - | chr5_4:57720124-57720143 | None:intergenic | 35.0% | |
| TTAGGGTTGAAGAGAAAGAA+TGG | - | chr5_4:57720125-57720144 | None:intergenic | 35.0% | |
| ! | TGAGAAAAATTGGGGTTTTG+GGG | - | chr5_4:57720155-57720174 | None:intergenic | 35.0% |
| ! | GTGAGAAAAATTGGGGTTTT+GGG | - | chr5_4:57720156-57720175 | None:intergenic | 35.0% |
| !! | GGTTTTGGTGAGAAAAATTG+GGG | - | chr5_4:57720163-57720182 | None:intergenic | 35.0% |
| !! | GGGTTTTGGTGAGAAAAATT+GGG | - | chr5_4:57720164-57720183 | None:intergenic | 35.0% |
| !! | AAATGGAAGAAGATGGGTTT+TGG | - | chr5_4:57720199-57720218 | None:intergenic | 35.0% |
| !!! | TGTAGTTTTGTGTGTAGTGA+AGG | - | chr5_4:57720337-57720356 | None:intergenic | 35.0% |
| ! | GATGAAATGTGGAGAGTTTT+TGG | - | chr5_4:57720384-57720403 | None:intergenic | 35.0% |
| AGGAATTAATCACACGGAAT+TGG | + | chr5_4:57720517-57720536 | Msa0859380:CDS | 35.0% | |
| ! | ACCGAAGCAAGAGAAATTTT+TGG | + | chr5_4:57720653-57720672 | Msa0859380:CDS | 35.0% |
| CCCAAAAATTTCTCTTGCTT+CGG | - | chr5_4:57720657-57720676 | None:intergenic | 35.0% | |
| ! | CCGAAGCAAGAGAAATTTTT+GGG | + | chr5_4:57720654-57720673 | Msa0859380:CDS | 35.0% |
| !!! | GCAAGAGAAATTTTTGGGTA+TGG | + | chr5_4:57720659-57720678 | Msa0859380:CDS | 35.0% |
| !!! | TGTTTGTTGTCCTTTGCTTT+TGG | + | chr5_4:57720757-57720776 | Msa0859380:CDS | 35.0% |
| GAATTGGGATTGAGAGTAAA+TGG | + | chr5_4:57720828-57720847 | Msa0859380:CDS | 35.0% | |
| AGACCTTCCAACAACAAATT+CGG | - | chr5_4:57720974-57720993 | None:intergenic | 35.0% | |
| !! | AATTTGTTGTTGGAAGGTCT+AGG | + | chr5_4:57720974-57720993 | Msa0859380:CDS | 35.0% |
| !! | ATTTGTTGTTGGAAGGTCTA+GGG | + | chr5_4:57720975-57720994 | Msa0859380:CDS | 35.0% |
| ! | TCTAGGTCGGTTTATTAAGT+CGG | + | chr5_4:57721015-57721034 | Msa0859380:CDS | 35.0% |
| TATATTGTCGAGTAAGTGTG+TGG | + | chr5_4:57721084-57721103 | Msa0859380:CDS | 35.0% | |
| TCCATTGGAGCTTATTAGTT+TGG | + | chr5_4:57721285-57721304 | Msa0859380:CDS | 35.0% | |
| AAACAGAAACATAAGAGGAG+TGG | + | chr5_4:57721313-57721332 | Msa0859380:CDS | 35.0% | |
| TTTAATAAGCGGGTCACAAT+AGG | - | chr5_4:57721347-57721366 | None:intergenic | 35.0% | |
| TTGTGACCCGCTTATTAAAT+TGG | + | chr5_4:57721348-57721367 | Msa0859380:CDS | 35.0% | |
| GAAGCAGTAAAATTGTTTCC+AGG | + | chr5_4:57721427-57721446 | Msa0859380:CDS | 35.0% | |
| CTCTTCAGGATTAGAATCTT+AGG | - | chr5_4:57721541-57721560 | None:intergenic | 35.0% | |
| ! | CGTCCTGTAAAAAGTATGTT+GGG | - | chr5_4:57721636-57721655 | None:intergenic | 35.0% |
| ! | ACGTCCTGTAAAAAGTATGT+TGG | - | chr5_4:57721637-57721656 | None:intergenic | 35.0% |
| !! | AACATACTTTTTACAGGACG+TGG | + | chr5_4:57721636-57721655 | Msa0859380:CDS | 35.0% |
| CAAGAGTTTCAATGTATGAG+TGG | + | chr5_4:57721671-57721690 | Msa0859380:CDS | 35.0% | |
| TTCAATGTATGAGTGGTTGA+AGG | + | chr5_4:57721678-57721697 | Msa0859380:CDS | 35.0% | |
| TTTGTGAATATGCATCCTGA+AGG | + | chr5_4:57721775-57721794 | Msa0859380:intron | 35.0% | |
| TTTATACGTTGCCAGATTGT+TGG | - | chr5_4:57721802-57721821 | None:intergenic | 35.0% | |
| AACAGCCACTCAATAGATAA+AGG | - | chr5_4:57722148-57722167 | None:intergenic | 35.0% | |
| TAATGGCTGTGGGTATAATT+GGG | + | chr5_4:57722452-57722471 | Msa0859380:intron | 35.0% | |
| TTCGGAAGGAAAGTTAGTAT+GGG | + | chr5_4:57722503-57722522 | Msa0859380:intron | 35.0% | |
| !!! | TCGACTTTTTTTTGAGTTCG+AGG | + | chr5_4:57722667-57722686 | Msa0859380:CDS | 35.0% |
| TTCGTTCGTTGCAATTTCAT+AGG | + | chr5_4:57722703-57722722 | Msa0859380:intron | 35.0% | |
| TTCGTTGCAATTTCATAGGT+GGG | + | chr5_4:57722707-57722726 | Msa0859380:intron | 35.0% | |
| !!! | CAAGTTTTGTTGCAGTACAT+AGG | + | chr5_4:57722783-57722802 | Msa0859380:intron | 35.0% |
| !!! | GCGTTTTGGAATGTCTATTT+TGG | + | chr5_4:57722912-57722931 | Msa0859380:intron | 35.0% |
| !!! | TGGAATGTCTATTTTGGCAA+TGG | + | chr5_4:57722918-57722937 | Msa0859380:intron | 35.0% |
| !!! | AATGTCTATTTTGGCAATGG+AGG | + | chr5_4:57722921-57722940 | Msa0859380:intron | 35.0% |
| AGACAGAGAGTCAAATTTGT+TGG | + | chr5_4:57722963-57722982 | Msa0859380:intron | 35.0% | |
| TTCAATTAAGAGCAGATGTG+TGG | + | chr5_4:57723082-57723101 | Msa0859380:intron | 35.0% | |
| ! | TTGTTTGAAGCATAGTTCTG+TGG | + | chr5_4:57723237-57723256 | Msa0859380:CDS | 35.0% |
| ! | GGTGAGAAAAATTGGGGTTT+TGG | - | chr5_4:57720157-57720176 | None:intergenic | 40.0% |
| !! | GGGGTTTTGGTGAGAAAAAT+TGG | - | chr5_4:57720165-57720184 | None:intergenic | 40.0% |
| !! | GGTTTTGGTGCAAGAAATTG+GGG | - | chr5_4:57720184-57720203 | None:intergenic | 40.0% |
| !! | GGGTTTTGGTGCAAGAAATT+GGG | - | chr5_4:57720185-57720204 | None:intergenic | 40.0% |
| !! | TGGGTTTTGGTGCAAGAAAT+TGG | - | chr5_4:57720186-57720205 | None:intergenic | 40.0% |
| !! | GGTGGATTTTGAACAGTTCA+AGG | - | chr5_4:57720237-57720256 | None:intergenic | 40.0% |
| TAAATTGGTGGAGAAAGAGC+GGG | - | chr5_4:57720266-57720285 | None:intergenic | 40.0% | |
| GTAAATTGGTGGAGAAAGAG+CGG | - | chr5_4:57720267-57720286 | None:intergenic | 40.0% | |
| ! | ACGTTGTGCTTCAATTTTCG+TGG | - | chr5_4:57720300-57720319 | None:intergenic | 40.0% |
| !!! | GGATGTTGATTTTGGAGATG+AGG | - | chr5_4:57720412-57720431 | None:intergenic | 40.0% |
| !!! | ATCGTCAGGGATGTTGATTT+TGG | - | chr5_4:57720420-57720439 | None:intergenic | 40.0% |
| AAAATCAACATCCCTGACGA+TGG | + | chr5_4:57720419-57720438 | Msa0859380:CDS | 40.0% | |
| ! | TGGGTATGGAAATGGAGTTT+TGG | + | chr5_4:57720673-57720692 | Msa0859380:CDS | 40.0% |
| !! | TGTTGTCCTTTGCTTTTGGT+TGG | + | chr5_4:57720761-57720780 | Msa0859380:CDS | 40.0% |
| ACATCACCAACCAAAAGCAA+AGG | - | chr5_4:57720770-57720789 | None:intergenic | 40.0% | |
| !! | CTAGTTCTAGCACTTATAGC+TGG | + | chr5_4:57720867-57720886 | Msa0859380:CDS | 40.0% |
| !! | GATCCGAATTTGTTGTTGGA+AGG | + | chr5_4:57720968-57720987 | Msa0859380:CDS | 40.0% |
| ! | AGGAAGCTGTTCTTGTTTCT+AGG | + | chr5_4:57720998-57721017 | Msa0859380:CDS | 40.0% |
| !! | AGCTGTTCTTGTTTCTAGGT+CGG | + | chr5_4:57721002-57721021 | Msa0859380:CDS | 40.0% |
| ! | CTAGGTCGGTTTATTAAGTC+GGG | + | chr5_4:57721016-57721035 | Msa0859380:CDS | 40.0% |
| AGGTTATAGAGCGGTTTGTA+AGG | + | chr5_4:57721216-57721235 | Msa0859380:CDS | 40.0% | |
| GCCAAACTAATAAGCTCCAA+TGG | - | chr5_4:57721289-57721308 | None:intergenic | 40.0% | |
| AGAAACATAAGAGGAGTGGA+GGG | + | chr5_4:57721317-57721336 | Msa0859380:CDS | 40.0% | |
| CTTGCTGAAACTAGGGTATA+TGG | + | chr5_4:57721384-57721403 | Msa0859380:CDS | 40.0% | |
| AGGGTATATGGAAAACTCTG+AGG | + | chr5_4:57721396-57721415 | Msa0859380:CDS | 40.0% | |
| ! | TATGGAAAACTCTGAGGAGA+TGG | + | chr5_4:57721402-57721421 | Msa0859380:CDS | 40.0% |
| GTAAAATTGTTTCCAGGGAG+AGG | + | chr5_4:57721433-57721452 | Msa0859380:CDS | 40.0% | |
| TGATCAGTTACAGGAGAGAT+TGG | + | chr5_4:57721456-57721475 | Msa0859380:CDS | 40.0% | |
| TTGTAGCACTGCGATTAGAA+TGG | + | chr5_4:57721504-57721523 | Msa0859380:CDS | 40.0% | |
| TGTATGAGTGGTTGAAGGAA+AGG | + | chr5_4:57721683-57721702 | Msa0859380:CDS | 40.0% | |
| AGTAAGTACAGGGTTTAGCA+AGG | - | chr5_4:57721902-57721921 | None:intergenic | 40.0% | |
| ACTAAGACAGCATGTACCAA+GGG | - | chr5_4:57722034-57722053 | None:intergenic | 40.0% | |
| AACTAAGACAGCATGTACCA+AGG | - | chr5_4:57722035-57722054 | None:intergenic | 40.0% | |
| GTCGTATGTAAATCTGAGCT+CGG | + | chr5_4:57722174-57722193 | Msa0859380:intron | 40.0% | |
| ! | TTATATATGCTTAGGCGTCG+TGG | + | chr5_4:57722391-57722410 | Msa0859380:intron | 40.0% |
| ! | TATATATGCTTAGGCGTCGT+GGG | + | chr5_4:57722392-57722411 | Msa0859380:intron | 40.0% |
| CGTAATCAAGAGTTTGCAGA+AGG | + | chr5_4:57722420-57722439 | Msa0859380:intron | 40.0% | |
| GTAATGGCTGTGGGTATAAT+TGG | + | chr5_4:57722451-57722470 | Msa0859380:intron | 40.0% | |
| GTTCGGAAGGAAAGTTAGTA+TGG | + | chr5_4:57722502-57722521 | Msa0859380:intron | 40.0% | |
| GTTCAATCCATTTGTACACG+AGG | + | chr5_4:57722565-57722584 | Msa0859380:intron | 40.0% | |
| TTTCTGCACAGATGATCCAA+TGG | - | chr5_4:57722633-57722652 | None:intergenic | 40.0% | |
| !!! | CTTTTTTTTGAGTTCGAGGC+AGG | + | chr5_4:57722671-57722690 | Msa0859380:CDS | 40.0% |
| GTTCGTTGCAATTTCATAGG+TGG | + | chr5_4:57722706-57722725 | Msa0859380:intron | 40.0% | |
| TTTGTTGCAGTACATAGGCA+AGG | + | chr5_4:57722788-57722807 | Msa0859380:intron | 40.0% | |
| CCAAACTGCACTTCTTTCAT+CGG | - | chr5_4:57722815-57722834 | None:intergenic | 40.0% | |
| ! | CGATGAAAGAAGTGCAGTTT+GGG | + | chr5_4:57722813-57722832 | Msa0859380:intron | 40.0% |
| ! | GTAGGTTTCGTGCATTTTGT+AGG | + | chr5_4:57722852-57722871 | Msa0859380:intron | 40.0% |
| ! | TGTAGGAGGTATGTTAGTGT+CGG | + | chr5_4:57722869-57722888 | Msa0859380:intron | 40.0% |
| TTTGTTGGCAACTTTCTGTG+AGG | + | chr5_4:57722978-57722997 | Msa0859380:intron | 40.0% | |
| ATTAAGAGCAGATGTGTGGT+TGG | + | chr5_4:57723086-57723105 | Msa0859380:intron | 40.0% | |
| TTAAGAGCAGATGTGTGGTT+GGG | + | chr5_4:57723087-57723106 | Msa0859380:intron | 40.0% | |
| TTGGGGAATAGTATTAGTGC+AGG | + | chr5_4:57723105-57723124 | Msa0859380:intron | 40.0% | |
| ! | CGTTTTGTCAGCAGTTTTTG+CGG | + | chr5_4:57723160-57723179 | Msa0859380:intron | 40.0% |
| !!! | GGTTTTGGGGTGTGGAATTA+GGG | - | chr5_4:57720142-57720161 | None:intergenic | 45.0% |
| !!! | AAAATTGGGGTTTTGGGGTG+TGG | - | chr5_4:57720150-57720169 | None:intergenic | 45.0% |
| ! | GGTGCAAGAAATTGGGGTTT+TGG | - | chr5_4:57720178-57720197 | None:intergenic | 45.0% |
| TGGAGAAAGAGCGGGAATTT+GGG | - | chr5_4:57720258-57720277 | None:intergenic | 45.0% | |
| GCGCGTTTGATGTAAATTGG+TGG | - | chr5_4:57720278-57720297 | None:intergenic | 45.0% | |
| GTGGCGCGTTTGATGTAAAT+TGG | - | chr5_4:57720281-57720300 | None:intergenic | 45.0% | |
| TGTGTTATCATGGGGTTCCA+AGG | + | chr5_4:57720609-57720628 | Msa0859380:CDS | 45.0% | |
| ATCTTCGCCATTCGATTCCT+TGG | - | chr5_4:57720629-57720648 | None:intergenic | 45.0% | |
| AGAGCGGTTTGTAAGGAGTT+AGG | + | chr5_4:57721223-57721242 | Msa0859380:CDS | 45.0% | |
| CAGAAACATAAGAGGAGTGG+AGG | + | chr5_4:57721316-57721335 | Msa0859380:CDS | 45.0% | |
| ACGGCTTTCTTGCTGAAACT+AGG | + | chr5_4:57721376-57721395 | Msa0859380:CDS | 45.0% | |
| CGGCTTTCTTGCTGAAACTA+GGG | + | chr5_4:57721377-57721396 | Msa0859380:CDS | 45.0% | |
| AATCCAAACCAGCTTCTACG+AGG | - | chr5_4:57721486-57721505 | None:intergenic | 45.0% | |
| ATCCTGAAGGTCCAACAATC+TGG | + | chr5_4:57721788-57721807 | Msa0859380:intron | 45.0% | |
| CAAGGGGAAGCAATGGAATT+TGG | - | chr5_4:57722017-57722036 | None:intergenic | 45.0% | |
| CAAATTCCATTGCTTCCCCT+TGG | + | chr5_4:57722015-57722034 | Msa0859380:intron | 45.0% | |
| CTAAGACAGCATGTACCAAG+GGG | - | chr5_4:57722033-57722052 | None:intergenic | 45.0% | |
| ! | ATATATGCTTAGGCGTCGTG+GGG | + | chr5_4:57722393-57722412 | Msa0859380:intron | 45.0% |
| GAGTTTGCAGAAGGAAAGAG+AGG | + | chr5_4:57722429-57722448 | Msa0859380:intron | 45.0% | |
| GCAGAAGGAAAGAGAGGTAA+TGG | + | chr5_4:57722435-57722454 | Msa0859380:intron | 45.0% | |
| ! | GAAAGAGAGGTAATGGCTGT+GGG | + | chr5_4:57722442-57722461 | Msa0859380:intron | 45.0% |
| ! | GTGTTTGCTAGTTGAGTCCT+TGG | + | chr5_4:57722477-57722496 | Msa0859380:intron | 45.0% |
| TTTGCTAGTTGAGTCCTTGG+TGG | + | chr5_4:57722480-57722499 | Msa0859380:intron | 45.0% | |
| ! | TAGTTGAGTCCTTGGTGGTT+CGG | + | chr5_4:57722485-57722504 | Msa0859380:intron | 45.0% |
| AATCCATTTGTACACGAGGC+AGG | + | chr5_4:57722569-57722588 | Msa0859380:intron | 45.0% | |
| !! | CAATTTCATAGGTGGGCTGA+AGG | + | chr5_4:57722714-57722733 | Msa0859380:intron | 45.0% |
| !! | TGAAGGAGAGGGTTTGTTAG+AGG | + | chr5_4:57722731-57722750 | Msa0859380:intron | 45.0% |
| ! | CCGATGAAAGAAGTGCAGTT+TGG | + | chr5_4:57722812-57722831 | Msa0859380:intron | 45.0% |
| ! | GGTACTAGTGCTAGCTTAGT+AGG | + | chr5_4:57722834-57722853 | Msa0859380:intron | 45.0% |
| ! | GGTTTCGTGCATTTTGTAGG+AGG | + | chr5_4:57722855-57722874 | Msa0859380:intron | 45.0% |
| ! | GAGGTATGTTAGTGTCGGAT+GGG | + | chr5_4:57722874-57722893 | Msa0859380:intron | 45.0% |
| ! | AGGTATGTTAGTGTCGGATG+GGG | + | chr5_4:57722875-57722894 | Msa0859380:intron | 45.0% |
| ! | TTTTGGCAATGGAGGCTGTA+AGG | + | chr5_4:57722929-57722948 | Msa0859380:intron | 45.0% |
| ATGGAGGCTGTAAGGATCAA+AGG | + | chr5_4:57722937-57722956 | Msa0859380:intron | 45.0% | |
| TGGAGGCTGTAAGGATCAAA+GGG | + | chr5_4:57722938-57722957 | Msa0859380:intron | 45.0% | |
| !!! | GGCTGGTTTTTACTTCAGAG+TGG | + | chr5_4:57722999-57723018 | Msa0859380:intron | 45.0% |
| !! | AGGGCGTTTGTTTGTTGTAG+TGG | + | chr5_4:57723042-57723061 | Msa0859380:intron | 45.0% |
| TAAGAGCAGATGTGTGGTTG+GGG | + | chr5_4:57723088-57723107 | Msa0859380:intron | 45.0% | |
| GGAATAGTATTAGTGCAGGC+CGG | + | chr5_4:57723109-57723128 | Msa0859380:intron | 45.0% | |
| GCATTTCTGCTGTGTTTGTC+AGG | + | chr5_4:57723196-57723215 | Msa0859380:intron | 45.0% | |
| ! | CATAGTTCTGTGGTTCTGCT+GGG | + | chr5_4:57723247-57723266 | Msa0859380:CDS | 45.0% |
| !!! | AAAAAAAAAAAAATCTTTTT+CGG | + | chr5_4:57722348-57722367 | Msa0859380:intron | 5.0% |
| !!! | GGGTTTTGGGGTGTGGAATT+AGG | - | chr5_4:57720143-57720162 | None:intergenic | 50.0% |
| AGAAAGAGCGGGAATTTGGG+TGG | - | chr5_4:57720255-57720274 | None:intergenic | 50.0% | |
| GTGGAGAAAGAGCGGGAATT+TGG | - | chr5_4:57720259-57720278 | None:intergenic | 50.0% | |
| GAAAAACGTCGCCATCGTCA+GGG | - | chr5_4:57720433-57720452 | None:intergenic | 50.0% | |
| ! | ACGTTTTTCGTGCTCTCAGC+AGG | + | chr5_4:57720444-57720463 | Msa0859380:CDS | 50.0% |
| TGGGGTTCCAAGGAATCGAA+TGG | + | chr5_4:57720619-57720638 | Msa0859380:CDS | 50.0% | |
| !! | GGGGGATCCGAATTTGTTGT+TGG | + | chr5_4:57720964-57720983 | Msa0859380:CDS | 50.0% |
| TGTTGTTGGAAGGTCTAGGG+AGG | + | chr5_4:57720978-57720997 | Msa0859380:CDS | 50.0% | |
| TGTAACTGATCACCTCTCCC+TGG | - | chr5_4:57721448-57721467 | None:intergenic | 50.0% | |
| AGGGAGAGGTGATCAGTTAC+AGG | + | chr5_4:57721447-57721466 | Msa0859380:CDS | 50.0% | |
| TGCCAGATTGTTGGACCTTC+AGG | - | chr5_4:57721793-57721812 | None:intergenic | 50.0% | |
| CATGTACCAAGGGGAAGCAA+TGG | - | chr5_4:57722024-57722043 | None:intergenic | 50.0% | |
| ! | TATATGCTTAGGCGTCGTGG+GGG | + | chr5_4:57722394-57722413 | Msa0859380:intron | 50.0% |
| ! | GGAAAGAGAGGTAATGGCTG+TGG | + | chr5_4:57722441-57722460 | Msa0859380:intron | 50.0% |
| ACTTTCCTTCCGAACCACCA+AGG | - | chr5_4:57722497-57722516 | None:intergenic | 50.0% | |
| ACTCCTGCCTCGTGTACAAA+TGG | - | chr5_4:57722575-57722594 | None:intergenic | 50.0% | |
| AGCTGGTTGCTTGTCATTGC+AGG | + | chr5_4:57722597-57722616 | Msa0859380:intron | 50.0% | |
| TGCAGGTGCAGATATGCCAT+TGG | + | chr5_4:57722614-57722633 | Msa0859380:intron | 50.0% | |
| !! | GAGAGGGTTTGTTAGAGGCT+GGG | + | chr5_4:57722736-57722755 | Msa0859380:intron | 50.0% |
| ! | GGAGGTATGTTAGTGTCGGA+TGG | + | chr5_4:57722873-57722892 | Msa0859380:intron | 50.0% |
| ! | GGTATGTTAGTGTCGGATGG+GGG | + | chr5_4:57722876-57722895 | Msa0859380:intron | 50.0% |
| GGAGGCTGTAAGGATCAAAG+GGG | + | chr5_4:57722939-57722958 | Msa0859380:intron | 50.0% | |
| TTGGCAACTTTCTGTGAGGC+TGG | + | chr5_4:57722982-57723001 | Msa0859380:intron | 50.0% | |
| TTTGAGCTTCTGCCAGATGC+AGG | + | chr5_4:57723022-57723041 | Msa0859380:intron | 50.0% | |
| TTGAGCTTCTGCCAGATGCA+GGG | + | chr5_4:57723023-57723042 | Msa0859380:intron | 50.0% | |
| ACAAACAAACGCCCTGCATC+TGG | - | chr5_4:57723037-57723056 | None:intergenic | 50.0% | |
| !!! | AACCCGAGCCATTTTGAGAC+CGG | - | chr5_4:57723131-57723150 | None:intergenic | 50.0% |
| ! | GCATAGTTCTGTGGTTCTGC+TGG | + | chr5_4:57723246-57723265 | Msa0859380:CDS | 50.0% |
| !! | GTGGTTCTGCTGGGTTTTCT+CGG | + | chr5_4:57723256-57723275 | Msa0859380:CDS | 50.0% |
| CGAAAAACGTCGCCATCGTC+AGG | - | chr5_4:57720434-57720453 | None:intergenic | 55.0% | |
| TTGGACTGCCTCGTAGAAGC+TGG | + | chr5_4:57721475-57721494 | Msa0859380:CDS | 55.0% | |
| CTGCCTCGTAGAAGCTGGTT+TGG | + | chr5_4:57721480-57721499 | Msa0859380:CDS | 55.0% | |
| ! | TGAGTCCTTGGTGGTTCGGA+AGG | + | chr5_4:57722489-57722508 | Msa0859380:intron | 55.0% |
| !! | TCATAGGTGGGCTGAAGGAG+AGG | + | chr5_4:57722719-57722738 | Msa0859380:intron | 55.0% |
| !! | CATAGGTGGGCTGAAGGAGA+GGG | + | chr5_4:57722720-57722739 | Msa0859380:intron | 55.0% |
| !! | GGAGAGGGTTTGTTAGAGGC+TGG | + | chr5_4:57722735-57722754 | Msa0859380:intron | 55.0% |
| !! | AGGGTTTGTTAGAGGCTGGG+AGG | + | chr5_4:57722739-57722758 | Msa0859380:intron | 55.0% |
| AGTGCAGGCCGGTCTCAAAA+TGG | + | chr5_4:57723120-57723139 | Msa0859380:intron | 55.0% | |
| AGGCCGGTCTCAAAATGGCT+CGG | + | chr5_4:57723125-57723144 | Msa0859380:intron | 55.0% | |
| ! | GGTCTCAAAATGGCTCGGGT+TGG | + | chr5_4:57723130-57723149 | Msa0859380:intron | 55.0% |
| CTCGGCTGTGGTGATTCATG+CGG | + | chr5_4:57723274-57723293 | Msa0859380:CDS | 55.0% | |
| TCGGCTGTGGTGATTCATGC+GGG | + | chr5_4:57723275-57723294 | Msa0859380:CDS | 55.0% | |
| ! | ACACGAGGCAGGAGTGTAGC+TGG | + | chr5_4:57722580-57722599 | Msa0859380:intron | 60.0% |
| ! | GAGTTCGAGGCAGGAGTGCA+AGG | + | chr5_4:57722680-57722699 | Msa0859380:CDS | 60.0% |
| AGAGGCTGGGAGGTTCAGAG+AGG | + | chr5_4:57722749-57722768 | Msa0859380:intron | 60.0% | |
| GAGGCTGGGAGGTTCAGAGA+GGG | + | chr5_4:57722750-57722769 | Msa0859380:intron | 60.0% | |
| CTGGGAGGTTCAGAGAGGGT+GGG | + | chr5_4:57722754-57722773 | Msa0859380:intron | 60.0% | |
| GAGGTTCAGAGAGGGTGGGT+AGG | + | chr5_4:57722758-57722777 | Msa0859380:intron | 60.0% | |
| ! | TAGTGTCGGATGGGGGAGTG+TGG | + | chr5_4:57722883-57722902 | Msa0859380:intron | 60.0% |
| !! | GAGTGTGGCTTGGGGCGTTT+TGG | + | chr5_4:57722898-57722917 | Msa0859380:intron | 60.0% |
| GGCCGGTCTCAAAATGGCTC+GGG | + | chr5_4:57723126-57723145 | Msa0859380:intron | 60.0% | |
| ! | CTGCTGGGTTTTCTCGGCTG+TGG | + | chr5_4:57723262-57723281 | Msa0859380:CDS | 60.0% |
| GCTGGGAGGTTCAGAGAGGG+TGG | + | chr5_4:57722753-57722772 | Msa0859380:intron | 65.0% | |
| ! | TCGGATGGGGGAGTGTGGCT+TGG | + | chr5_4:57722888-57722907 | Msa0859380:intron | 65.0% |
| ! | CGGATGGGGGAGTGTGGCTT+GGG | + | chr5_4:57722889-57722908 | Msa0859380:intron | 65.0% |
| ! | GGATGGGGGAGTGTGGCTTG+GGG | + | chr5_4:57722890-57722909 | Msa0859380:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 57720086 | 57723306 | 57720086 | ID=Msa0859380;Name=Msa0859380 |
| chr5_4 | mRNA | 57720086 | 57723306 | 57720086 | ID=Msa0859380-mRNA-1;Parent=Msa0859380;Name=Msa0859380-mRNA-1;_AED=0.11;_eAED=0.13;_QI=0|0|0|1|1|1|3|0|615 |
| chr5_4 | exon | 57720086 | 57721761 | 57720086 | ID=Msa0859380-mRNA-1:exon:17576;Parent=Msa0859380-mRNA-1 |
| chr5_4 | exon | 57722619 | 57722701 | 57722619 | ID=Msa0859380-mRNA-1:exon:17577;Parent=Msa0859380-mRNA-1 |
| chr5_4 | exon | 57723218 | 57723306 | 57723218 | ID=Msa0859380-mRNA-1:exon:17578;Parent=Msa0859380-mRNA-1 |
| chr5_4 | CDS | 57720086 | 57721761 | 57720086 | ID=Msa0859380-mRNA-1:cds;Parent=Msa0859380-mRNA-1 |
| chr5_4 | CDS | 57722619 | 57722701 | 57722619 | ID=Msa0859380-mRNA-1:cds;Parent=Msa0859380-mRNA-1 |
| chr5_4 | CDS | 57723218 | 57723306 | 57723218 | ID=Msa0859380-mRNA-1:cds;Parent=Msa0859380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
