AlfalfaGEDB | Msa1269080

M. sativa cultivar zhongmu-4 / Msa1269080

KEGG: K19355
GO: GO:0000003 GO:0000272 GO:0003006 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005575 GO:0005576 GO:0005623 GO:0005975 GO:0005976 GO:0006950 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009636 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009845 GO:0009900 GO:0009987 GO:0010035 GO:0010038 GO:0010047 GO:0010154 GO:0010412 GO:0015923 GO:0016043 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0042545 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044464 GO:0045229 GO:0046355 GO:0046686 GO:0048046 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0061687 GO:0071554 GO:0071555 GO:0071585 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0090351 GO:0097501 GO:0098754 GO:1901575 GO:1990059 GO:1990170
PFAM: PF00150.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1269080	XP_003612065.1	98.858	438	5	0	1	438	1	438	0.0	901

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1269080	sp\|Q9FJZ3\|MAN7_ARATH	66.284	436	139	4	2	436	1	429	0.0	592

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1269080	G7KF03	98.858	438	5	0	1	438	1	438	0.0	901

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000550	Msa1269080	-0.818253	2.158880e-52	-8.615850e-47
Msa0007080	Msa1269080	0.802127	6.500712e-49	-8.615850e-47
Msa0008340	Msa1269080	0.821403	4.112607e-53	-8.615850e-47
Msa0011140	Msa1269080	0.855932	4.526354e-62	-8.615850e-47
Msa0011720	Msa1269080	0.812810	3.515425e-51	-8.615850e-47
Msa0012440	Msa1269080	0.806424	8.281106e-50	-8.615850e-47
Msa0015940	Msa1269080	0.823754	1.168181e-53	-8.615850e-47
Msa0017510	Msa1269080	0.822881	1.868531e-53	-8.615850e-47
Msa0050730	Msa1269080	0.804584	2.014232e-49	-8.615850e-47
Msa0050760	Msa1269080	0.827108	1.876573e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1269080	MtrunA17_Chr5g0404601	98.858	438	5	0	1	438	1	438	0.0	901
Msa1269080	MtrunA17_Chr3g0141751	64.678	419	137	6	2	418	1	410	0.0	549
Msa1269080	MtrunA17_Chr1g0193611	57.179	397	166	2	7	403	11	403	2.17e-165	471
Msa1269080	MtrunA17_Chr1g0193601	57.252	393	164	2	11	403	15	403	2.15e-163	466
Msa1269080	MtrunA17_Chr1g0193531	56.061	396	168	4	9	404	11	400	1.04e-162	464
Msa1269080	MtrunA17_Chr4g0020521	57.182	369	156	2	31	399	34	400	2.06e-160	458
Msa1269080	MtrunA17_Chr1g0193551	52.854	403	186	4	1	403	6	404	5.42e-155	444
Msa1269080	MtrunA17_Chr7g0271511	54.987	371	162	3	29	399	60	425	6.28e-150	432
Msa1269080	MtrunA17_Chr8g0334501	52.455	387	181	2	24	408	55	440	2.57e-146	424
Msa1269080	MtrunA17_Chr7g0245101	51.958	383	181	2	31	411	60	441	4.57e-146	424

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1269080	AT5G66460.1	66.284	436	139	4	2	436	1	429	0.0	592
Msa1269080	AT3G10890.1	53.580	405	184	4	2	403	1	404	1.93e-168	479
Msa1269080	AT3G10900.1	54.568	405	177	6	2	402	1	402	1.72e-160	459
Msa1269080	AT5G01930.1	50.758	396	189	3	15	405	28	422	1.03e-147	428
Msa1269080	AT1G02310.1	52.368	380	169	5	26	399	24	397	2.59e-134	392
Msa1269080	AT1G02310.2	52.368	380	169	5	26	399	44	417	6.05e-134	392
Msa1269080	AT2G20680.1	46.133	375	200	1	30	402	41	415	7.05e-125	369
Msa1269080	AT4G28320.1	45.699	372	200	1	30	399	40	411	2.33e-124	368
Msa1269080	AT3G30540.1	48.333	360	140	7	2	355	1	320	6.05e-115	340

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Find 121 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGGAGGTCCAGCGAG+TGG	0.590584	8_3:+2303229	Msa1269080:CDS
AAACCAGGAGAATATTGCAA+AGG	0.645714	8_3:-2300798	None:intergenic
AACTGGGCTAGAAGTAATAA+TGG	0.393024	8_3:+2301221	Msa1269080:CDS
AATATCAATGTAGAAGCTGC+TGG	0.539763	8_3:+2300573	Msa1269080:CDS
AATCCTACTATTAACAACAT+AGG	0.484474	8_3:+2302541	Msa1269080:CDS
AATGTAGAAGCTGCTGGTGA+TGG	0.601670	8_3:+2300579	Msa1269080:CDS
AATTAAGCTGATACTAAGCT+TGG	0.574063	8_3:+2301157	Msa1269080:CDS
ACACTATATATCAATGTGTA+TGG	0.372842	8_3:-2300451	None:intergenic
ACACTCTTGATGGACCAAAA+TGG	0.361828	8_3:-2300547	None:intergenic
ACCTGAATAGTCCTTCCTGA+AGG	0.619157	8_3:-2301895	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCAAAGGAAATTACAAGTA+AGG	-	chr8_3:2300327-2300346	None:intergenic	30.0%
TGATATTGAAACACTCTTGA+TGG	-	chr8_3:2300560-2300579	None:intergenic	30.0%
GGCATTCATTTCATGTTAAA+TGG	+	chr8_3:2300618-2300637	Msa1269080:CDS	30.0%
TTAAAGCCATTTGCATAGTA+AGG	-	chr8_3:2300648-2300667	None:intergenic	30.0%
ATTTGTTCATTGTAGAAACC+AGG	-	chr8_3:2300816-2300835	None:intergenic	30.0%
TAATCTAACTTTGGATTACG+AGG	-	chr8_3:2300933-2300952	None:intergenic	30.0%
TAATCCAAAGTTAGATTACG+AGG	+	chr8_3:2300935-2300954	Msa1269080:intron	30.0%
TTTACCTCGTAATCTAACTT+TGG	-	chr8_3:2300942-2300961	None:intergenic	30.0%
TAAATTGAACAATTTCCGCA+GGG	-	chr8_3:2301038-2301057	None:intergenic	30.0%
TTAAATTGAACAATTTCCGC+AGG	-	chr8_3:2301039-2301058	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	2300232	2303986	2300232	ID=Msa1269080;Name=Msa1269080
chr8_3	mRNA	2300232	2303986	2300232	ID=Msa1269080-mRNA-1;Parent=Msa1269080;Name=Msa1269080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=281\|1\|1\|1\|1\|1\|5\|497\|438
chr8_3	exon	2300232	2300842	2300232	ID=Msa1269080-mRNA-1:exon:701;Parent=Msa1269080-mRNA-1
chr8_3	exon	2301119	2301316	2301119	ID=Msa1269080-mRNA-1:exon:702;Parent=Msa1269080-mRNA-1
chr8_3	exon	2301793	2301915	2301793	ID=Msa1269080-mRNA-1:exon:703;Parent=Msa1269080-mRNA-1
chr8_3	exon	2302430	2302635	2302430	ID=Msa1269080-mRNA-1:exon:704;Parent=Msa1269080-mRNA-1
chr8_3	exon	2303030	2303986	2303030	ID=Msa1269080-mRNA-1:exon:705;Parent=Msa1269080-mRNA-1
chr8_3	five_prime_UTR	2300232	2300512	2300232	ID=Msa1269080-mRNA-1:five_prime_utr;Parent=Msa1269080-mRNA-1
chr8_3	CDS	2300513	2300842	2300513	ID=Msa1269080-mRNA-1:cds;Parent=Msa1269080-mRNA-1
chr8_3	CDS	2301119	2301316	2301119	ID=Msa1269080-mRNA-1:cds;Parent=Msa1269080-mRNA-1
chr8_3	CDS	2301793	2301915	2301793	ID=Msa1269080-mRNA-1:cds;Parent=Msa1269080-mRNA-1
chr8_3	CDS	2302430	2302635	2302430	ID=Msa1269080-mRNA-1:cds;Parent=Msa1269080-mRNA-1
chr8_3	CDS	2303030	2303489	2303030	ID=Msa1269080-mRNA-1:cds;Parent=Msa1269080-mRNA-1
chr8_3	three_prime_UTR	2303490	2303986	2303490	ID=Msa1269080-mRNA-1:three_prime_utr;Parent=Msa1269080-mRNA-1

Gene Sequence

>Msa1269080

ATGATGAAGCATTTTGCTTTGTTATTTCTTTTGGCCATTTTGGTCCATCAAGAGTGTTTCAATATCAATGTAGAAGCTGCTGGTGATGGTTTTGTGAGAACAAGAGGCATTCATTTCATGTTAAATGGAAATCCTTACTATGCAAATGGCTTTAATGCTTACTGGTTAATGTATACAGCTTCTGATCCATCTCAGAGATTCAAGGTTTCAAATGCTTTCCGTGAAGCAACAAGCCATGGACTTACTGTTGCTAGAACTTGGGCTTTCAGTGATGGTGGTTATAGTCCTTTGCAATATTCTCCTGGTTTCTACAATGAACAAATGTTTAAGGGGTTGGATTTTGTTATATCTGAGGCTAGAAAGCATGGAATTAAGCTGATACTAAGCTTGGTGAACAATTATGAGAGTTTTGGAGGGAAGAAGCAGTATGTGAACTGGGCTAGAAGTAATAATGGACAGTATTTGACATCAGATGATGATTTCTTTAGGAACCCTGTTGTTAAAGGTTTCTACATCAATCATGTTAAGACTGTTCTCAACAGGTACAACAGTTTTACTGGAATTCATTACAAAGATGATCCAACAATCATGGCATGGGAGCTTATGAATGAACCTAGGTGTACGTCAGATCCTTCAGGAAGGACTATTCAGGGCTGGATCACGGAAATGGCTTCTTTAGTGAAGTCCATTGATAGGAATCACTTATTGGAAGCTGGACTTGAAGGGTTTTATGGACAATCAACACCTCAAAGGACCAAATTCAATCCTACTATTAACAACATAGGGACAGACTTCATTGCCAACAATCGAATCCCAGGCATCGATTTTGCAACCGTTCATTGTTATCCCGACCAATGGGTACAAAGTTCAAATGAGCAAGATCAGCTTGCATTTTTGAACAACTGGCTCAGTGCTCATTTCCTAGACGCACAATATGCTCTAAAAAAACCAATTCTAGTAGCAGAATTTGGAAAATCATTTAAAGATTCAGGTTTCAGTAGTAACCAGAGAGATCAACTTTTCAATACCGTGTACTACAAGATATATGCGTCTGCGAAAAGGGGAGGTCCAGCGAGTGGAGCATTGTTCTGGCAACTTCTTACAGAAGGAATGGAATCTTTCGACGATGGCTATGGAATATCGCTTGGTCAGAGTACTTCTACTGCTAATGTCATTGCTCAGCAATCTCATAAACTATACCTTATTCGGAAGATTTATGCAAAGATCGCTAATGAACGACGATGGAAAAGAGCTAGATTTAACGGAAGAAGGTCTTCGCGCGTTGGTGGAAATAGAGGAAGACAAATTGGTTTCTGA

Protein sequence

>Msa1269080

MMKHFALLFLLAILVHQECFNINVEAAGDGFVRTRGIHFMLNGNPYYANGFNAYWLMYTASDPSQRFKVSNAFREATSHGLTVARTWAFSDGGYSPLQYSPGFYNEQMFKGLDFVISEARKHGIKLILSLVNNYESFGGKKQYVNWARSNNGQYLTSDDDFFRNPVVKGFYINHVKTVLNRYNSFTGIHYKDDPTIMAWELMNEPRCTSDPSGRTIQGWITEMASLVKSIDRNHLLEAGLEGFYGQSTPQRTKFNPTINNIGTDFIANNRIPGIDFATVHCYPDQWVQSSNEQDQLAFLNNWLSAHFLDAQYALKKPILVAEFGKSFKDSGFSSNQRDQLFNTVYYKIYASAKRGGPASGALFWQLLTEGMESFDDGYGISLGQSTSTANVIAQQSHKLYLIRKIYAKIANERRWKRARFNGRRSSRVGGNRGRQIGF*