Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269080 | XP_003612065.1 | 98.858 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 0.0 | 901 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269080 | sp|Q9FJZ3|MAN7_ARATH | 66.284 | 436 | 139 | 4 | 2 | 436 | 1 | 429 | 0.0 | 592 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269080 | G7KF03 | 98.858 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 0.0 | 901 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000550 | Msa1269080 | -0.818253 | 2.158880e-52 | -8.615850e-47 |
Msa0007080 | Msa1269080 | 0.802127 | 6.500712e-49 | -8.615850e-47 |
Msa0008340 | Msa1269080 | 0.821403 | 4.112607e-53 | -8.615850e-47 |
Msa0011140 | Msa1269080 | 0.855932 | 4.526354e-62 | -8.615850e-47 |
Msa0011720 | Msa1269080 | 0.812810 | 3.515425e-51 | -8.615850e-47 |
Msa0012440 | Msa1269080 | 0.806424 | 8.281106e-50 | -8.615850e-47 |
Msa0015940 | Msa1269080 | 0.823754 | 1.168181e-53 | -8.615850e-47 |
Msa0017510 | Msa1269080 | 0.822881 | 1.868531e-53 | -8.615850e-47 |
Msa0050730 | Msa1269080 | 0.804584 | 2.014232e-49 | -8.615850e-47 |
Msa0050760 | Msa1269080 | 0.827108 | 1.876573e-54 | -8.615850e-47 |
Msa0053780 | Msa1269080 | 0.805927 | 1.054004e-49 | -8.615850e-47 |
Msa0062220 | Msa1269080 | 0.814967 | 1.176391e-51 | -8.615850e-47 |
Msa0094100 | Msa1269080 | 0.808361 | 3.216038e-50 | -8.615850e-47 |
Msa0105420 | Msa1269080 | 0.835646 | 1.486430e-56 | -8.615850e-47 |
Msa0110970 | Msa1269080 | 0.820735 | 5.860692e-53 | -8.615850e-47 |
Msa0114540 | Msa1269080 | -0.803768 | 2.977927e-49 | -8.615850e-47 |
Msa0120330 | Msa1269080 | 0.830123 | 3.506053e-55 | -8.615850e-47 |
Msa0606360 | Msa1269080 | 0.801578 | 8.429888e-49 | -8.615850e-47 |
Msa0610590 | Msa1269080 | 0.801600 | 8.340137e-49 | -8.615850e-47 |
Msa0621890 | Msa1269080 | 0.803012 | 4.270461e-49 | -8.615850e-47 |
Msa0626230 | Msa1269080 | 0.809915 | 1.494155e-50 | -8.615850e-47 |
Msa0647130 | Msa1269080 | 0.805920 | 1.057422e-49 | -8.615850e-47 |
Msa0647980 | Msa1269080 | 0.807773 | 4.291295e-50 | -8.615850e-47 |
Msa0651190 | Msa1269080 | 0.803498 | 3.387138e-49 | -8.615850e-47 |
Msa0657970 | Msa1269080 | 0.805278 | 1.442026e-49 | -8.615850e-47 |
Msa0670980 | Msa1269080 | 0.805176 | 1.514807e-49 | -8.615850e-47 |
Msa0677400 | Msa1269080 | 0.801344 | 9.411631e-49 | -8.615850e-47 |
Msa0697140 | Msa1269080 | 0.811299 | 7.503211e-51 | -8.615850e-47 |
Msa0702350 | Msa1269080 | 0.818132 | 2.299247e-52 | -8.615850e-47 |
Msa0702680 | Msa1269080 | 0.829380 | 5.316976e-55 | -8.615850e-47 |
Msa0716560 | Msa1269080 | 0.939588 | 9.876282e-100 | -8.615850e-47 |
Msa0753340 | Msa1269080 | 0.832868 | 7.392595e-56 | -8.615850e-47 |
Msa0757950 | Msa1269080 | 0.974929 | 4.980748e-139 | -8.615850e-47 |
Msa0767080 | Msa1269080 | 0.806023 | 1.006128e-49 | -8.615850e-47 |
Msa0769390 | Msa1269080 | 0.812856 | 3.434917e-51 | -8.615850e-47 |
Msa0782970 | Msa1269080 | 0.827254 | 1.732037e-54 | -8.615850e-47 |
Msa0789690 | Msa1269080 | 0.815142 | 1.075679e-51 | -8.615850e-47 |
Msa0795390 | Msa1269080 | 0.808180 | 3.514633e-50 | -8.615850e-47 |
Msa0804680 | Msa1269080 | 0.813976 | 1.948635e-51 | -8.615850e-47 |
Msa0810480 | Msa1269080 | 0.991798 | 1.330092e-189 | -8.615850e-47 |
Msa0824680 | Msa1269080 | 0.813790 | 2.141971e-51 | -8.615850e-47 |
Msa0825230 | Msa1269080 | 0.823110 | 1.652638e-53 | -8.615850e-47 |
Msa0825620 | Msa1269080 | 0.809957 | 1.463863e-50 | -8.615850e-47 |
Msa0832370 | Msa1269080 | 0.831814 | 1.348193e-55 | -8.615850e-47 |
Msa0136080 | Msa1269080 | 0.853423 | 2.412630e-61 | -8.615850e-47 |
Msa0136110 | Msa1269080 | 0.855490 | 6.091300e-62 | -8.615850e-47 |
Msa0140780 | Msa1269080 | 0.821814 | 3.305284e-53 | -8.615850e-47 |
Msa0140910 | Msa1269080 | 0.817598 | 3.034666e-52 | -8.615850e-47 |
Msa0149560 | Msa1269080 | 0.803460 | 3.449629e-49 | -8.615850e-47 |
Msa0151270 | Msa1269080 | 0.832974 | 6.957935e-56 | -8.615850e-47 |
Msa0151690 | Msa1269080 | 0.820847 | 5.525636e-53 | -8.615850e-47 |
Msa0157290 | Msa1269080 | 0.822907 | 1.842208e-53 | -8.615850e-47 |
Msa0168100 | Msa1269080 | 0.803302 | 3.719988e-49 | -8.615850e-47 |
Msa0185480 | Msa1269080 | 0.825498 | 4.535792e-54 | -8.615850e-47 |
Msa0193650 | Msa1269080 | 0.833696 | 4.598891e-56 | -8.615850e-47 |
Msa0196130 | Msa1269080 | -0.806764 | 7.020379e-50 | -8.615850e-47 |
Msa0197230 | Msa1269080 | 0.860743 | 1.669377e-63 | -8.615850e-47 |
Msa0200260 | Msa1269080 | 0.809567 | 1.775489e-50 | -8.615850e-47 |
Msa0217400 | Msa1269080 | 0.813142 | 2.972226e-51 | -8.615850e-47 |
Msa0222920 | Msa1269080 | 0.801682 | 8.023827e-49 | -8.615850e-47 |
Msa1227950 | Msa1269080 | 0.803563 | 3.283906e-49 | -8.615850e-47 |
Msa1228210 | Msa1269080 | 0.856426 | 3.243220e-62 | -8.615850e-47 |
Msa1242230 | Msa1269080 | 0.802886 | 4.533994e-49 | -8.615850e-47 |
Msa1243010 | Msa1269080 | 0.807542 | 4.803564e-50 | -8.615850e-47 |
Msa1249680 | Msa1269080 | 0.810533 | 1.099612e-50 | -8.615850e-47 |
Msa1254750 | Msa1269080 | 0.808455 | 3.070571e-50 | -8.615850e-47 |
Msa1267220 | Msa1269080 | 0.832231 | 1.063750e-55 | -8.615850e-47 |
Msa1269080 | Msa1271280 | 0.851106 | 1.101402e-60 | -8.615850e-47 |
Msa1269080 | Msa1271290 | 0.806192 | 9.270590e-50 | -8.615850e-47 |
Msa1269080 | Msa1271300 | 0.853803 | 1.876189e-61 | -8.615850e-47 |
Msa1269080 | Msa1278840 | 0.888442 | 5.881210e-73 | -8.615850e-47 |
Msa1269080 | Msa1297090 | 0.801280 | 9.698411e-49 | -8.615850e-47 |
Msa1269080 | Msa1303720 | 0.827635 | 1.403476e-54 | -8.615850e-47 |
Msa1269080 | Msa1303780 | 0.807529 | 4.835322e-50 | -8.615850e-47 |
Msa1269080 | Msa1308380 | 0.821527 | 3.850053e-53 | -8.615850e-47 |
Msa1269080 | Msa1318240 | 0.847263 | 1.291575e-59 | -8.615850e-47 |
Msa1269080 | Msa1322860 | 0.811520 | 6.718711e-51 | -8.615850e-47 |
Msa1269080 | Msa1343820 | 0.821945 | 3.082552e-53 | -8.615850e-47 |
Msa1269080 | Msa1358040 | 0.803027 | 4.240447e-49 | -8.615850e-47 |
Msa1269080 | Msa1363890 | 0.814440 | 1.539354e-51 | -8.615850e-47 |
Msa1269080 | Msa1365060 | 0.804762 | 1.848663e-49 | -8.615850e-47 |
Msa1269080 | Msa1382720 | 0.805268 | 1.449126e-49 | -8.615850e-47 |
Msa1269080 | Msa1408790 | 0.809285 | 2.040237e-50 | -8.615850e-47 |
Msa1269080 | Msa1414740 | 0.834922 | 2.264809e-56 | -8.615850e-47 |
Msa1269080 | Msa1423450 | 0.846673 | 1.873309e-59 | -8.615850e-47 |
Msa1269080 | Msa1429420 | 0.812414 | 4.292065e-51 | -8.615850e-47 |
Msa1269080 | Msa1436040 | 0.808036 | 3.772261e-50 | -8.615850e-47 |
Msa1269080 | Msa1440600 | 0.826827 | 2.190478e-54 | -8.615850e-47 |
Msa1269080 | Msa1460890 | 0.817545 | 3.119551e-52 | -8.615850e-47 |
Msa0371420 | Msa1269080 | -0.815681 | 8.161754e-52 | -8.615850e-47 |
Msa0371540 | Msa1269080 | 0.823516 | 1.328442e-53 | -8.615850e-47 |
Msa0378340 | Msa1269080 | 0.826263 | 2.986081e-54 | -8.615850e-47 |
Msa0410650 | Msa1269080 | 0.805078 | 1.588239e-49 | -8.615850e-47 |
Msa0427690 | Msa1269080 | 0.829764 | 4.288040e-55 | -8.615850e-47 |
Msa0427880 | Msa1269080 | 0.835203 | 1.923235e-56 | -8.615850e-47 |
Msa0430820 | Msa1269080 | 0.810935 | 8.998273e-51 | -8.615850e-47 |
Msa0437710 | Msa1269080 | 0.800243 | 1.579512e-48 | -8.615850e-47 |
Msa0450440 | Msa1269080 | 0.805868 | 1.084433e-49 | -8.615850e-47 |
Msa0461720 | Msa1269080 | 0.810160 | 1.323349e-50 | -8.615850e-47 |
Msa0463460 | Msa1269080 | 0.812328 | 4.479939e-51 | -8.615850e-47 |
Msa0465680 | Msa1269080 | -0.816692 | 4.850072e-52 | -8.615850e-47 |
Msa0466060 | Msa1269080 | 0.820547 | 6.474889e-53 | -8.615850e-47 |
Msa0474110 | Msa1269080 | 0.846148 | 2.606125e-59 | -8.615850e-47 |
Msa0996080 | Msa1269080 | 0.827799 | 1.281049e-54 | -8.615850e-47 |
Msa1008490 | Msa1269080 | 0.850403 | 1.736941e-60 | -8.615850e-47 |
Msa1009000 | Msa1269080 | 0.837146 | 6.174733e-57 | -8.615850e-47 |
Msa1014270 | Msa1269080 | 0.814916 | 1.207563e-51 | -8.615850e-47 |
Msa1019020 | Msa1269080 | 0.818439 | 1.958741e-52 | -8.615850e-47 |
Msa1020710 | Msa1269080 | 0.837080 | 6.418291e-57 | -8.615850e-47 |
Msa1036390 | Msa1269080 | 0.800456 | 1.429352e-48 | -8.615850e-47 |
Msa1037920 | Msa1269080 | 0.805827 | 1.105897e-49 | -8.615850e-47 |
Msa1055260 | Msa1269080 | 0.830782 | 2.418405e-55 | -8.615850e-47 |
Msa1055280 | Msa1269080 | 0.835390 | 1.725733e-56 | -8.615850e-47 |
Msa1073110 | Msa1269080 | -0.803459 | 3.450850e-49 | -8.615850e-47 |
Msa1075220 | Msa1269080 | -0.802031 | 6.803545e-49 | -8.615850e-47 |
Msa1077390 | Msa1269080 | 0.800497 | 1.401919e-48 | -8.615850e-47 |
Msa1082500 | Msa1269080 | 0.800119 | 1.673804e-48 | -8.615850e-47 |
Msa1083410 | Msa1269080 | 0.815095 | 1.101643e-51 | -8.615850e-47 |
Msa1085200 | Msa1269080 | 0.802821 | 4.677688e-49 | -8.615850e-47 |
Msa1089530 | Msa1269080 | 0.801917 | 7.182252e-49 | -8.615850e-47 |
Msa1098560 | Msa1269080 | 0.857287 | 1.809191e-62 | -8.615850e-47 |
Msa1099030 | Msa1269080 | 0.835201 | 1.925619e-56 | -8.615850e-47 |
Msa1104000 | Msa1269080 | 0.842200 | 2.990637e-58 | -8.615850e-47 |
Msa0238890 | Msa1269080 | 0.845803 | 3.233325e-59 | -8.615850e-47 |
Msa0239130 | Msa1269080 | 0.831220 | 1.888299e-55 | -8.615850e-47 |
Msa0243100 | Msa1269080 | 0.805883 | 1.076661e-49 | -8.615850e-47 |
Msa0257250 | Msa1269080 | 0.812725 | 3.668944e-51 | -8.615850e-47 |
Msa0260820 | Msa1269080 | -0.806035 | 1.000235e-49 | -8.615850e-47 |
Msa0264350 | Msa1269080 | 0.825569 | 4.364275e-54 | -8.615850e-47 |
Msa0267760 | Msa1269080 | 0.801717 | 7.891251e-49 | -8.615850e-47 |
Msa0289890 | Msa1269080 | 0.838031 | 3.660196e-57 | -8.615850e-47 |
Msa0290650 | Msa1269080 | 0.804187 | 2.436279e-49 | -8.615850e-47 |
Msa0308830 | Msa1269080 | 0.826344 | 2.857005e-54 | -8.615850e-47 |
Msa0313990 | Msa1269080 | 0.827126 | 1.858483e-54 | -8.615850e-47 |
Msa0316850 | Msa1269080 | 0.800660 | 1.298840e-48 | -8.615850e-47 |
Msa0335040 | Msa1269080 | 0.815843 | 7.511366e-52 | -8.615850e-47 |
Msa0337330 | Msa1269080 | 0.801205 | 1.004911e-48 | -8.615850e-47 |
Msa0349080 | Msa1269080 | 0.845092 | 5.037336e-59 | -8.615850e-47 |
Msa0363310 | Msa1269080 | 0.815883 | 7.356175e-52 | -8.615850e-47 |
Msa1124680 | Msa1269080 | -0.809495 | 1.840017e-50 | -8.615850e-47 |
Msa1130270 | Msa1269080 | -0.817632 | 2.981962e-52 | -8.615850e-47 |
Msa1144390 | Msa1269080 | 0.813663 | 2.283500e-51 | -8.615850e-47 |
Msa1147570 | Msa1269080 | 0.817747 | 2.808637e-52 | -8.615850e-47 |
Msa1162550 | Msa1269080 | -0.803745 | 3.010377e-49 | -8.615850e-47 |
Msa1167400 | Msa1269080 | 0.806267 | 8.935992e-50 | -8.615850e-47 |
Msa1201470 | Msa1269080 | 0.831621 | 1.504298e-55 | -8.615850e-47 |
Msa1214880 | Msa1269080 | 0.804670 | 1.932801e-49 | -8.615850e-47 |
Msa1214890 | Msa1269080 | 0.807425 | 5.086164e-50 | -8.615850e-47 |
Msa1215960 | Msa1269080 | 0.830614 | 2.658930e-55 | -8.615850e-47 |
Msa1220230 | Msa1269080 | 0.805461 | 1.320419e-49 | -8.615850e-47 |
Msa1221560 | Msa1269080 | 0.807288 | 5.439732e-50 | -8.615850e-47 |
Msa0491040 | Msa1269080 | 0.841145 | 5.674898e-58 | -8.615850e-47 |
Msa0507680 | Msa1269080 | 0.800335 | 1.512871e-48 | -8.615850e-47 |
Msa0517340 | Msa1269080 | 0.827371 | 1.623402e-54 | -8.615850e-47 |
Msa0518520 | Msa1269080 | 0.826543 | 2.561485e-54 | -8.615850e-47 |
Msa0518610 | Msa1269080 | 0.845350 | 4.289335e-59 | -8.615850e-47 |
Msa0526710 | Msa1269080 | 0.801749 | 7.774709e-49 | -8.615850e-47 |
Msa0532710 | Msa1269080 | 0.805467 | 1.316448e-49 | -8.615850e-47 |
Msa0545000 | Msa1269080 | 0.801706 | 7.935662e-49 | -8.615850e-47 |
Msa0554710 | Msa1269080 | 0.804964 | 1.677544e-49 | -8.615850e-47 |
Msa0566030 | Msa1269080 | 0.803062 | 4.169273e-49 | -8.615850e-47 |
Msa0576070 | Msa1269080 | 0.807543 | 4.801100e-50 | -8.615850e-47 |
Msa0576130 | Msa1269080 | 0.811993 | 5.300789e-51 | -8.615850e-47 |
Msa0578970 | Msa1269080 | 0.803357 | 3.622966e-49 | -8.615850e-47 |
Msa0846810 | Msa1269080 | 0.807915 | 4.002637e-50 | -8.615850e-47 |
Msa0847390 | Msa1269080 | 0.820642 | 6.157445e-53 | -8.615850e-47 |
Msa0862100 | Msa1269080 | 0.838359 | 3.014436e-57 | -8.615850e-47 |
Msa0880140 | Msa1269080 | 0.824243 | 8.972604e-54 | -8.615850e-47 |
Msa0893810 | Msa1269080 | 0.804286 | 2.323922e-49 | -8.615850e-47 |
Msa0896210 | Msa1269080 | 0.826818 | 2.201228e-54 | -8.615850e-47 |
Msa0896220 | Msa1269080 | 0.835389 | 1.726292e-56 | -8.615850e-47 |
Msa0908050 | Msa1269080 | 0.802481 | 5.496985e-49 | -8.615850e-47 |
Msa0908170 | Msa1269080 | 0.808843 | 2.537839e-50 | -8.615850e-47 |
Msa0933230 | Msa1269080 | 0.806254 | 8.994325e-50 | -8.615850e-47 |
Msa0936270 | Msa1269080 | 0.815650 | 8.291049e-52 | -8.615850e-47 |
Msa0944030 | Msa1269080 | 0.814103 | 1.827163e-51 | -8.615850e-47 |
Msa0944770 | Msa1269080 | 0.841820 | 3.768188e-58 | -8.615850e-47 |
Msa0951710 | Msa1269080 | 0.801624 | 8.245422e-49 | -8.615850e-47 |
Msa0955300 | Msa1269080 | 0.809988 | 1.441020e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269080 | MtrunA17_Chr5g0404601 | 98.858 | 438 | 5 | 0 | 1 | 438 | 1 | 438 | 0.0 | 901 |
Msa1269080 | MtrunA17_Chr3g0141751 | 64.678 | 419 | 137 | 6 | 2 | 418 | 1 | 410 | 0.0 | 549 |
Msa1269080 | MtrunA17_Chr1g0193611 | 57.179 | 397 | 166 | 2 | 7 | 403 | 11 | 403 | 2.17e-165 | 471 |
Msa1269080 | MtrunA17_Chr1g0193601 | 57.252 | 393 | 164 | 2 | 11 | 403 | 15 | 403 | 2.15e-163 | 466 |
Msa1269080 | MtrunA17_Chr1g0193531 | 56.061 | 396 | 168 | 4 | 9 | 404 | 11 | 400 | 1.04e-162 | 464 |
Msa1269080 | MtrunA17_Chr4g0020521 | 57.182 | 369 | 156 | 2 | 31 | 399 | 34 | 400 | 2.06e-160 | 458 |
Msa1269080 | MtrunA17_Chr1g0193551 | 52.854 | 403 | 186 | 4 | 1 | 403 | 6 | 404 | 5.42e-155 | 444 |
Msa1269080 | MtrunA17_Chr7g0271511 | 54.987 | 371 | 162 | 3 | 29 | 399 | 60 | 425 | 6.28e-150 | 432 |
Msa1269080 | MtrunA17_Chr8g0334501 | 52.455 | 387 | 181 | 2 | 24 | 408 | 55 | 440 | 2.57e-146 | 424 |
Msa1269080 | MtrunA17_Chr7g0245101 | 51.958 | 383 | 181 | 2 | 31 | 411 | 60 | 441 | 4.57e-146 | 424 |
Msa1269080 | MtrunA17_Chr7g0245051 | 49.630 | 405 | 195 | 3 | 15 | 411 | 37 | 440 | 7.09e-145 | 421 |
Msa1269080 | MtrunA17_Chr2g0324441 | 46.791 | 374 | 195 | 2 | 30 | 399 | 39 | 412 | 1.99e-127 | 375 |
Msa1269080 | MtrunA17_Chr1g0193541 | 47.044 | 406 | 174 | 5 | 5 | 408 | 8 | 374 | 2.23e-127 | 374 |
Msa1269080 | MtrunA17_Chr4g0040121 | 43.236 | 377 | 211 | 1 | 31 | 404 | 39 | 415 | 6.02e-118 | 351 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1269080 | AT5G66460.1 | 66.284 | 436 | 139 | 4 | 2 | 436 | 1 | 429 | 0.0 | 592 |
Msa1269080 | AT3G10890.1 | 53.580 | 405 | 184 | 4 | 2 | 403 | 1 | 404 | 1.93e-168 | 479 |
Msa1269080 | AT3G10900.1 | 54.568 | 405 | 177 | 6 | 2 | 402 | 1 | 402 | 1.72e-160 | 459 |
Msa1269080 | AT5G01930.1 | 50.758 | 396 | 189 | 3 | 15 | 405 | 28 | 422 | 1.03e-147 | 428 |
Msa1269080 | AT1G02310.1 | 52.368 | 380 | 169 | 5 | 26 | 399 | 24 | 397 | 2.59e-134 | 392 |
Msa1269080 | AT1G02310.2 | 52.368 | 380 | 169 | 5 | 26 | 399 | 44 | 417 | 6.05e-134 | 392 |
Msa1269080 | AT2G20680.1 | 46.133 | 375 | 200 | 1 | 30 | 402 | 41 | 415 | 7.05e-125 | 369 |
Msa1269080 | AT4G28320.1 | 45.699 | 372 | 200 | 1 | 30 | 399 | 40 | 411 | 2.33e-124 | 368 |
Msa1269080 | AT3G30540.1 | 48.333 | 360 | 140 | 7 | 2 | 355 | 1 | 320 | 6.05e-115 | 340 |
Find 121 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GACAAATTGGTTTCTGAAAT+TGG | 0.066566 | 8_3:+2303473 | Msa1269080:exon |
CTACAATGAACAAATGTTTA+AGG | 0.138199 | 8_3:+2300821 | Msa1269080:CDS |
GGCATTCATTTCATGTTAAA+TGG | 0.157356 | 8_3:+2300618 | Msa1269080:CDS |
CCAATTCTAGTAGCAGAATT+TGG | 0.190502 | 8_3:+2303121 | Msa1269080:CDS |
GGAAAATCATTTAAAGATTC+AGG | 0.202299 | 8_3:+2303142 | Msa1269080:CDS |
GCAAAAGTGCATCTCTTTAA+TGG | 0.203171 | 8_3:-2300383 | None:intergenic |
TTGCATAAATCTTCCGAATA+AGG | 0.205768 | 8_3:-2303372 | None:intergenic |
TTTAGGAACCCTGTTGTTAA+AGG | 0.213923 | 8_3:+2301272 | Msa1269080:CDS |
CAAATGGCTTTAATGCTTAC+TGG | 0.225498 | 8_3:+2300655 | Msa1269080:CDS |
CTGATGTATTTAACCGAAAT+AGG | 0.234530 | 8_3:+2303857 | Msa1269080:three_prime_UTR |
GTGAACAATTATGAGAGTTT+TGG | 0.256433 | 8_3:+2301179 | Msa1269080:CDS |
TGGTTTCTGAAATTGGAATA+TGG | 0.261008 | 8_3:+2303480 | Msa1269080:exon |
CCAAATTCTGCTACTAGAAT+TGG | 0.275704 | 8_3:-2303121 | None:intergenic |
CATTGATAGGAATCACTTAT+TGG | 0.286976 | 8_3:+2302465 | Msa1269080:CDS |
GTTAATAGTAGGATTGAATT+TGG | 0.289349 | 8_3:-2302533 | None:intergenic |
CACAAAGCCCTAACCTATTT+CGG | 0.292852 | 8_3:-2303870 | None:intergenic |
GGAAATAGAGGAAGACAAAT+TGG | 0.293388 | 8_3:+2303460 | Msa1269080:CDS |
CATCAGATGATGATTTCTTT+AGG | 0.293457 | 8_3:+2301255 | Msa1269080:CDS |
TGATATTGAAACACTCTTGA+TGG | 0.294230 | 8_3:-2300557 | None:intergenic |
CTATTAAAAGTAAATAATTA+AGG | 0.313308 | 8_3:+2303817 | Msa1269080:three_prime_UTR |
CTCATAAACTATACCTTATT+CGG | 0.322951 | 8_3:+2303359 | Msa1269080:CDS |
TTATCGCCATGTCATGCTTT+CGG | 0.337328 | 8_3:+2303626 | Msa1269080:three_prime_UTR |
CGTTTCTCTAATGTATTTCA+TGG | 0.337333 | 8_3:+2303898 | Msa1269080:three_prime_UTR |
CAGCGAGTGGAGCATTGTTC+TGG | 0.358097 | 8_3:+2303242 | Msa1269080:CDS |
ACACTCTTGATGGACCAAAA+TGG | 0.361828 | 8_3:-2300547 | None:intergenic |
TTAAAGCCATTTGCATAGTA+AGG | 0.366576 | 8_3:-2300645 | None:intergenic |
CTTTAGTGAAGTCCATTGAT+AGG | 0.370341 | 8_3:+2302452 | Msa1269080:CDS |
GATATATGCGTCTGCGAAAA+GGG | 0.371629 | 8_3:+2303213 | Msa1269080:CDS |
ACACTATATATCAATGTGTA+TGG | 0.372842 | 8_3:-2300451 | None:intergenic |
GACTTACTGTTGCTAGAACT+TGG | 0.374694 | 8_3:+2300751 | Msa1269080:CDS |
GTCAAAGGAAATTACAAGTA+AGG | 0.378214 | 8_3:-2300324 | None:intergenic |
TGATCCATCTCAGAGATTCA+AGG | 0.381469 | 8_3:+2300695 | Msa1269080:CDS |
GTATTTAACCGAAATAGGTT+AGG | 0.386604 | 8_3:+2303862 | Msa1269080:three_prime_UTR |
CAAAAGTGCATCTCTTTAAT+GGG | 0.390846 | 8_3:-2300382 | None:intergenic |
AACTGGGCTAGAAGTAATAA+TGG | 0.393024 | 8_3:+2301221 | Msa1269080:CDS |
AGCTCCCATGCCATGATTGT+TGG | 0.395030 | 8_3:-2301844 | None:intergenic |
ATGTAGAAACCTTTAACAAC+AGG | 0.395168 | 8_3:-2301281 | None:intergenic |
GATGCCTGGGATTCGATTGT+TGG | 0.395930 | 8_3:-2302578 | None:intergenic |
GCTTATTATTTGTGTTGTGT+TGG | 0.398515 | 8_3:+2303514 | Msa1269080:three_prime_UTR |
TTTCTACATCAATCATGTTA+AGG | 0.399179 | 8_3:+2301295 | Msa1269080:CDS |
ATATAATTTAGTTACCCTCT+TGG | 0.414515 | 8_3:-2303593 | None:intergenic |
TCCTTCAGGAAGGACTATTC+AGG | 0.416711 | 8_3:+2301894 | Msa1269080:CDS |
GTCCATGGCTTGTTGCTTCA+CGG | 0.424293 | 8_3:-2300731 | None:intergenic |
ATACATCAGCAAACACAATC+TGG | 0.428504 | 8_3:-2303843 | None:intergenic |
AGATATATGCGTCTGCGAAA+AGG | 0.430041 | 8_3:+2303212 | Msa1269080:CDS |
TTATTGGAAGCTGGACTTGA+AGG | 0.430930 | 8_3:+2302481 | Msa1269080:CDS |
CTTATTATTTGTGTTGTGTT+GGG | 0.434370 | 8_3:+2303515 | Msa1269080:three_prime_UTR |
AGGTGTACGTCAGATCCTTC+AGG | 0.440657 | 8_3:+2301880 | Msa1269080:CDS |
TCTCTTTAATGGGAAGTTGT+TGG | 0.447013 | 8_3:-2300372 | None:intergenic |
TATTGAAAAGTTGATCTCTC+TGG | 0.448941 | 8_3:-2303177 | None:intergenic |
GGAAGAAGCAGTATGTGAAC+TGG | 0.448948 | 8_3:+2301204 | Msa1269080:CDS |
TGGAAAAGAGCTAGATTTAA+CGG | 0.453928 | 8_3:+2303415 | Msa1269080:CDS |
AGTCCTTTGCAATATTCTCC+TGG | 0.460187 | 8_3:+2300795 | Msa1269080:CDS |
GGATTGAATTTGGTCCTTTG+AGG | 0.460580 | 8_3:-2302523 | None:intergenic |
AGTGAGTGGTAAGACTTAAG+AGG | 0.463631 | 8_3:-2300410 | None:intergenic |
TTCCACAGACTGTTCTCAAC+AGG | 0.466531 | 8_3:+2301785 | Msa1269080:intron |
GGAAATCCTTACTATGCAAA+TGG | 0.467525 | 8_3:+2300639 | Msa1269080:CDS |
ATAGGGCTGGATCACGGAAA+TGG | 0.471647 | 8_3:+2302426 | Msa1269080:intron |
TATTTAACCGAAATAGGTTA+GGG | 0.471916 | 8_3:+2303863 | Msa1269080:three_prime_UTR |
CAATAAGTGATTCCTATCAA+TGG | 0.476985 | 8_3:-2302464 | None:intergenic |
AATCCTACTATTAACAACAT+AGG | 0.484474 | 8_3:+2302541 | Msa1269080:CDS |
ACGGTTGCAAAATCGATGCC+TGG | 0.487815 | 8_3:-2302592 | None:intergenic |
GTCCCTATGTTGTTAATAGT+AGG | 0.488737 | 8_3:-2302544 | None:intergenic |
AGAACTTGGGCTTTCAGTGA+TGG | 0.491493 | 8_3:+2300765 | Msa1269080:CDS |
CAAAGATGATCCAACAATCA+TGG | 0.501682 | 8_3:+2301834 | Msa1269080:CDS |
ATGCAATAAAACTAAAACTT+CGG | 0.503597 | 8_3:-2303959 | None:intergenic |
AGGAATCACTTATTGGAAGC+TGG | 0.504001 | 8_3:+2302472 | Msa1269080:CDS |
GAGCTAGATTTAACGGAAGA+AGG | 0.504274 | 8_3:+2303422 | Msa1269080:CDS |
TTAGAGCATATTGTGCGTCT+AGG | 0.506071 | 8_3:-2303093 | None:intergenic |
ACTTACTGTTGCTAGAACTT+GGG | 0.508850 | 8_3:+2300752 | Msa1269080:CDS |
GAATCTTTCGACGATGGCTA+TGG | 0.509733 | 8_3:+2303286 | Msa1269080:CDS |
TTCTGGCAACTTCTTACAGA+AGG | 0.511415 | 8_3:+2303259 | Msa1269080:CDS |
GTTTCTCTAATGTATTTCAT+GGG | 0.513529 | 8_3:+2303899 | Msa1269080:three_prime_UTR |
ATCCTACTATTAACAACATA+GGG | 0.515967 | 8_3:+2302542 | Msa1269080:CDS |
GAAACCTTGAATCTCTGAGA+TGG | 0.516474 | 8_3:-2300699 | None:intergenic |
TTCCGTGAAGCAACAAGCCA+TGG | 0.522141 | 8_3:+2300729 | Msa1269080:CDS |
TCGCGCGTTGGTGGAAATAG+AGG | 0.524094 | 8_3:+2303448 | Msa1269080:CDS |
GCAACTTCTTACAGAAGGAA+TGG | 0.529256 | 8_3:+2303264 | Msa1269080:CDS |
TATTGGAAGCTGGACTTGAA+GGG | 0.536131 | 8_3:+2302482 | Msa1269080:CDS |
AATATCAATGTAGAAGCTGC+TGG | 0.539763 | 8_3:+2300573 | Msa1269080:CDS |
CGGTTGCAAAATCGATGCCT+GGG | 0.543074 | 8_3:-2302591 | None:intergenic |
TTGGACCATGAAAAGTGAAA+AGG | 0.545370 | 8_3:-2300353 | None:intergenic |
CAGAACAATGCTCCACTCGC+TGG | 0.548466 | 8_3:-2303241 | None:intergenic |
CACTATATATCAATGTGTAT+GGG | 0.551211 | 8_3:-2300450 | None:intergenic |
ATTGCCAACAATCGAATCCC+AGG | 0.555801 | 8_3:+2302574 | Msa1269080:CDS |
GTGAAAAGGATGTTTGTCAA+AGG | 0.561022 | 8_3:-2300339 | None:intergenic |
GATGGCTATGGAATATCGCT+TGG | 0.563874 | 8_3:+2303298 | Msa1269080:CDS |
TTCATTGTTATCCCGACCAA+TGG | 0.564049 | 8_3:+2302614 | Msa1269080:CDS |
TAAAACTAAAACTTCGGTGA+AGG | 0.565929 | 8_3:-2303953 | None:intergenic |
ATGATCCAACAATCATGGCA+TGG | 0.566474 | 8_3:+2301839 | Msa1269080:CDS |
ATTTGTTCATTGTAGAAACC+AGG | 0.567175 | 8_3:-2300813 | None:intergenic |
CGCATATATCTTGTAGTACA+CGG | 0.572125 | 8_3:-2303200 | None:intergenic |
ATATCTGAGGCTAGAAAGCA+TGG | 0.573786 | 8_3:+2301134 | Msa1269080:CDS |
AATTAAGCTGATACTAAGCT+TGG | 0.574063 | 8_3:+2301157 | Msa1269080:CDS |
TGATCCAACAATCATGGCAT+GGG | 0.574244 | 8_3:+2301840 | Msa1269080:CDS |
AGAAGGTCTTCGCGCGTTGG+TGG | 0.574402 | 8_3:+2303439 | Msa1269080:CDS |
GGAAGAAGGTCTTCGCGCGT+TGG | 0.579935 | 8_3:+2303436 | Msa1269080:CDS |
TTCTAGCAACAGTAAGTCCA+TGG | 0.583102 | 8_3:-2300746 | None:intergenic |
ACTTGGGCTTTCAGTGATGG+TGG | 0.586210 | 8_3:+2300768 | Msa1269080:CDS |
TTGTTTATTAGAGAAAGCTA+AGG | 0.589413 | 8_3:+2303657 | Msa1269080:three_prime_UTR |
AAAAGGGGAGGTCCAGCGAG+TGG | 0.590584 | 8_3:+2303229 | Msa1269080:CDS |
TTGATTATAGGGCTGGATCA+CGG | 0.597155 | 8_3:+2302420 | Msa1269080:intron |
ATGGACAATCAACACCTCAA+AGG | 0.598022 | 8_3:+2302509 | Msa1269080:CDS |
AATGTAGAAGCTGCTGGTGA+TGG | 0.601670 | 8_3:+2300579 | Msa1269080:CDS |
GAAGAAGCAGTATGTGAACT+GGG | 0.610382 | 8_3:+2301205 | Msa1269080:CDS |
ACCTGAATAGTCCTTCCTGA+AGG | 0.619157 | 8_3:-2301895 | None:intergenic |
GTGGTAAGACTTAAGAGGAA+AGG | 0.620330 | 8_3:-2300405 | None:intergenic |
CAGAATGTTTACGTCCAAGA+GGG | 0.622445 | 8_3:+2303579 | Msa1269080:three_prime_UTR |
ATATATGCGTCTGCGAAAAG+GGG | 0.632807 | 8_3:+2303214 | Msa1269080:CDS |
TGTAGAAACCTTTAACAACA+GGG | 0.641407 | 8_3:-2301280 | None:intergenic |
TATGCGTCTGCGAAAAGGGG+AGG | 0.642345 | 8_3:+2303217 | Msa1269080:CDS |
AAACCAGGAGAATATTGCAA+AGG | 0.645714 | 8_3:-2300798 | None:intergenic |
ATACACATTGATATATAGTG+TGG | 0.654755 | 8_3:+2300453 | Msa1269080:five_prime_UTR |
TCAGAATGTTTACGTCCAAG+AGG | 0.658264 | 8_3:+2303578 | Msa1269080:three_prime_UTR |
TTGGTCGGGATAACAATGAA+CGG | 0.658478 | 8_3:-2302611 | None:intergenic |
GAAGGATCTGACGTACACCT+AGG | 0.660094 | 8_3:-2301877 | None:intergenic |
GGGAGCTTATGAATGAACCT+AGG | 0.661088 | 8_3:+2301860 | Msa1269080:CDS |
GGAATGGAATCTTTCGACGA+TGG | 0.663000 | 8_3:+2303280 | Msa1269080:CDS |
AGATCGCTAATGAACGACGA+TGG | 0.665356 | 8_3:+2303395 | Msa1269080:CDS |
GAGAAGCCGAAAGCATGACA+TGG | 0.671958 | 8_3:-2303632 | None:intergenic |
GTACGTCAGATCCTTCAGGA+AGG | 0.713213 | 8_3:+2301884 | Msa1269080:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTAAAAATTAATTTTGCATT+TGG | - | chr8_3:2301656-2301675 | None:intergenic | 10.0% |
!! | ATATTTATATAATATATACG+AGG | + | chr8_3:2301707-2301726 | Msa1269080:intron | 10.0% |
!! | ATTGTAAACAAATTAAAAAT+GGG | - | chr8_3:2302705-2302724 | None:intergenic | 10.0% |
!! | CTATTAAAAGTAAATAATTA+AGG | + | chr8_3:2303817-2303836 | Msa1269080:three_prime_UTR | 10.0% |
!!! | TATTTTTCATAAACTATTCA+AGG | + | chr8_3:2300849-2300868 | Msa1269080:intron | 15.0% |
!!! | ACAATTTTCAACTTTTTTTA+CGG | - | chr8_3:2300988-2301007 | None:intergenic | 15.0% |
!! | GTTCAATTTAATATATCATT+TGG | + | chr8_3:2301048-2301067 | Msa1269080:intron | 15.0% |
!! | TGAATATGAAAATTATCATA+TGG | + | chr8_3:2301360-2301379 | Msa1269080:intron | 15.0% |
!! | TTAACTCATAAATAAGAATA+AGG | - | chr8_3:2301564-2301583 | None:intergenic | 15.0% |
!! | AAAAAGAAAAAAAGAAAAAG+GGG | - | chr8_3:2301970-2301989 | None:intergenic | 15.0% |
!! | CAAAAAGAAAAAAAGAAAAA+GGG | - | chr8_3:2301971-2301990 | None:intergenic | 15.0% |
!! | TCAAAAAGAAAAAAAGAAAA+AGG | - | chr8_3:2301972-2301991 | None:intergenic | 15.0% |
!! | TAATTGAAGTATAATTTCTT+TGG | - | chr8_3:2302069-2302088 | None:intergenic | 15.0% |
!!! | ATTATGAACATTTTTTACAT+AGG | + | chr8_3:2302107-2302126 | Msa1269080:intron | 15.0% |
!! | ATTTAACAATTATGATTGAT+AGG | - | chr8_3:2302136-2302155 | None:intergenic | 15.0% |
!! | CATTGTAAACAAATTAAAAA+TGG | - | chr8_3:2302706-2302725 | None:intergenic | 15.0% |
!!! | TTATTCTAGACCTTTTTTTA+GGG | - | chr8_3:2300249-2300268 | None:intergenic | 20.0% |
!!! | ATTATTCTAGACCTTTTTTT+AGG | - | chr8_3:2300250-2300269 | None:intergenic | 20.0% |
!!! | TTTTGCTTTGTTATTTCTTT+TGG | + | chr8_3:2300524-2300543 | Msa1269080:CDS | 20.0% |
!!! | ATTTTTTTGTCTTAAACTTC+CGG | + | chr8_3:2301010-2301029 | Msa1269080:intron | 20.0% |
!!! | AGCTTTATGTAAAAACTAAA+AGG | - | chr8_3:2301420-2301439 | None:intergenic | 20.0% |
!!! | TTACATAAAGCTATGTTTTT+AGG | + | chr8_3:2301428-2301447 | Msa1269080:intron | 20.0% |
!!! | AAATTAATTTTGCATTTGGA+TGG | - | chr8_3:2301652-2301671 | None:intergenic | 20.0% |
!!! | TTTGATGTAATTTATTTTCC+TGG | + | chr8_3:2301759-2301778 | Msa1269080:intron | 20.0% |
!! | TAAAGTCTTACCAATATTAT+TGG | + | chr8_3:2302293-2302312 | Msa1269080:intron | 20.0% |
!! | ACTGTTTAACATTTGATTAT+AGG | + | chr8_3:2302408-2302427 | Msa1269080:intron | 20.0% |
!! | CTGTTTAACATTTGATTATA+GGG | + | chr8_3:2302409-2302428 | Msa1269080:intron | 20.0% |
!!! | ACTATATTTTTAGTTACCAT+TGG | - | chr8_3:2302633-2302652 | None:intergenic | 20.0% |
!!! | ATTTGTTTACAATGCAATTT+TGG | + | chr8_3:2302712-2302731 | Msa1269080:intron | 20.0% |
!!! | TTTGTTTACAATGCAATTTT+GGG | + | chr8_3:2302713-2302732 | Msa1269080:intron | 20.0% |
!! | ATGCAATAAAACTAAAACTT+CGG | - | chr8_3:2303962-2303981 | None:intergenic | 20.0% |
!!! | AAGTTTTAGTTTTATTGCAT+TGG | + | chr8_3:2303962-2303981 | Msa1269080:three_prime_UTR | 20.0% |
!!! | AGTTTTAGTTTTATTGCATT+GGG | + | chr8_3:2303963-2303982 | Msa1269080:three_prime_UTR | 20.0% |
! | CACTATATATCAATGTGTAT+GGG | - | chr8_3:2300453-2300472 | None:intergenic | 25.0% |
! | ACACTATATATCAATGTGTA+TGG | - | chr8_3:2300454-2300473 | None:intergenic | 25.0% |
! | ATACACATTGATATATAGTG+TGG | + | chr8_3:2300453-2300472 | Msa1269080:five_prime_UTR | 25.0% |
! | CTACAATGAACAAATGTTTA+AGG | + | chr8_3:2300821-2300840 | Msa1269080:CDS | 25.0% |
!! | TTGTATCTGATTTTCTATGT+TGG | + | chr8_3:2301085-2301104 | Msa1269080:intron | 25.0% |
! | TTTCTACATCAATCATGTTA+AGG | + | chr8_3:2301295-2301314 | Msa1269080:CDS | 25.0% |
! | CCAGTTTACGATTAAAAAAT+AGG | - | chr8_3:2302243-2302262 | None:intergenic | 25.0% |
!!! | CCTATTTTTTAATCGTAAAC+TGG | + | chr8_3:2302240-2302259 | Msa1269080:intron | 25.0% |
! | GTTTCTACTACCAATAATAT+TGG | - | chr8_3:2302306-2302325 | None:intergenic | 25.0% |
!! | GAAACTTTTGCAATATGATT+TGG | + | chr8_3:2302321-2302340 | Msa1269080:intron | 25.0% |
! | GTTAATAGTAGGATTGAATT+TGG | - | chr8_3:2302536-2302555 | None:intergenic | 25.0% |
! | AATCCTACTATTAACAACAT+AGG | + | chr8_3:2302541-2302560 | Msa1269080:CDS | 25.0% |
! | ATCCTACTATTAACAACATA+GGG | + | chr8_3:2302542-2302561 | Msa1269080:CDS | 25.0% |
!!! | TATTTTTAGTTACCATTGGT+CGG | - | chr8_3:2302629-2302648 | None:intergenic | 25.0% |
! | CCAATTAAATCATGTACATT+TGG | - | chr8_3:2302947-2302966 | None:intergenic | 25.0% |
! | CCAAATGTACATGATTTAAT+TGG | + | chr8_3:2302944-2302963 | Msa1269080:intron | 25.0% |
! | GGAAAATCATTTAAAGATTC+AGG | + | chr8_3:2303142-2303161 | Msa1269080:CDS | 25.0% |
! | CTCATAAACTATACCTTATT+CGG | + | chr8_3:2303359-2303378 | Msa1269080:CDS | 25.0% |
! | CTTATTATTTGTGTTGTGTT+GGG | + | chr8_3:2303515-2303534 | Msa1269080:three_prime_UTR | 25.0% |
!!! | GGAAGACATTTTTAAAGTAA+AGG | + | chr8_3:2303536-2303555 | Msa1269080:three_prime_UTR | 25.0% |
! | ATATAATTTAGTTACCCTCT+TGG | - | chr8_3:2303596-2303615 | None:intergenic | 25.0% |
! | TTGTTTATTAGAGAAAGCTA+AGG | + | chr8_3:2303657-2303676 | Msa1269080:three_prime_UTR | 25.0% |
! | TATTTAACCGAAATAGGTTA+GGG | + | chr8_3:2303863-2303882 | Msa1269080:three_prime_UTR | 25.0% |
! | GTTTCTCTAATGTATTTCAT+GGG | + | chr8_3:2303899-2303918 | Msa1269080:three_prime_UTR | 25.0% |
GTCAAAGGAAATTACAAGTA+AGG | - | chr8_3:2300327-2300346 | None:intergenic | 30.0% | |
!! | AACATCCTTTTCACTTTTCA+TGG | + | chr8_3:2300348-2300367 | Msa1269080:five_prime_UTR | 30.0% |
! | CAAAAGTGCATCTCTTTAAT+GGG | - | chr8_3:2300385-2300404 | None:intergenic | 30.0% |
! | TATTTTGTATTGTGAGTGAG+TGG | - | chr8_3:2300427-2300446 | None:intergenic | 30.0% |
!!! | GTTATTTCTTTTGGCCATTT+TGG | + | chr8_3:2300533-2300552 | Msa1269080:CDS | 30.0% |
TGATATTGAAACACTCTTGA+TGG | - | chr8_3:2300560-2300579 | None:intergenic | 30.0% | |
GGCATTCATTTCATGTTAAA+TGG | + | chr8_3:2300618-2300637 | Msa1269080:CDS | 30.0% | |
TTAAAGCCATTTGCATAGTA+AGG | - | chr8_3:2300648-2300667 | None:intergenic | 30.0% | |
ATTTGTTCATTGTAGAAACC+AGG | - | chr8_3:2300816-2300835 | None:intergenic | 30.0% | |
TAATCTAACTTTGGATTACG+AGG | - | chr8_3:2300933-2300952 | None:intergenic | 30.0% | |
TAATCCAAAGTTAGATTACG+AGG | + | chr8_3:2300935-2300954 | Msa1269080:intron | 30.0% | |
TTTACCTCGTAATCTAACTT+TGG | - | chr8_3:2300942-2300961 | None:intergenic | 30.0% | |
TAAATTGAACAATTTCCGCA+GGG | - | chr8_3:2301038-2301057 | None:intergenic | 30.0% | |
TTAAATTGAACAATTTCCGC+AGG | - | chr8_3:2301039-2301058 | None:intergenic | 30.0% | |
! | ATCTGATTTTCTATGTTGGT+TGG | + | chr8_3:2301089-2301108 | Msa1269080:intron | 30.0% |
!! | GTTGGATTTTGTTATATCTG+AGG | + | chr8_3:2301121-2301140 | Msa1269080:CDS | 30.0% |
AATTAAGCTGATACTAAGCT+TGG | + | chr8_3:2301157-2301176 | Msa1269080:CDS | 30.0% | |
! | GTGAACAATTATGAGAGTTT+TGG | + | chr8_3:2301179-2301198 | Msa1269080:CDS | 30.0% |
!! | AACAATTATGAGAGTTTTGG+AGG | + | chr8_3:2301182-2301201 | Msa1269080:CDS | 30.0% |
!!! | ACAATTATGAGAGTTTTGGA+GGG | + | chr8_3:2301183-2301202 | Msa1269080:CDS | 30.0% |
CATCAGATGATGATTTCTTT+AGG | + | chr8_3:2301255-2301274 | Msa1269080:CDS | 30.0% | |
TGTAGAAACCTTTAACAACA+GGG | - | chr8_3:2301283-2301302 | None:intergenic | 30.0% | |
ATGTAGAAACCTTTAACAAC+AGG | - | chr8_3:2301284-2301303 | None:intergenic | 30.0% | |
AGATTAATTGGTTGTTGGAT+CGG | - | chr8_3:2301613-2301632 | None:intergenic | 30.0% | |
!! | ATTAGACCTCTGAGATTAAT+TGG | - | chr8_3:2301625-2301644 | None:intergenic | 30.0% |
! | TAATTTTGCATTTGGATGGT+GGG | - | chr8_3:2301648-2301667 | None:intergenic | 30.0% |
! | TTAATTTTGCATTTGGATGG+TGG | - | chr8_3:2301649-2301668 | None:intergenic | 30.0% |
!!! | AGGAGTATAGTTTTGTTGTT+AGG | + | chr8_3:2301727-2301746 | Msa1269080:intron | 30.0% |
AAGAAAAAAAGAAAAAGGGG+TGG | - | chr8_3:2301967-2301986 | None:intergenic | 30.0% | |
TTAACATTTGATTATAGGGC+TGG | + | chr8_3:2302413-2302432 | Msa1269080:intron | 30.0% | |
CAATAAGTGATTCCTATCAA+TGG | - | chr8_3:2302467-2302486 | None:intergenic | 30.0% | |
CATTGATAGGAATCACTTAT+TGG | + | chr8_3:2302465-2302484 | Msa1269080:CDS | 30.0% | |
!!! | ATTTTTAGTTACCATTGGTC+GGG | - | chr8_3:2302628-2302647 | None:intergenic | 30.0% |
AAGTGAATTTGACAGAATCA+TGG | - | chr8_3:2302919-2302938 | None:intergenic | 30.0% | |
! | TTTTCTTTGATTGCACAAAC+AGG | + | chr8_3:2303008-2303027 | Msa1269080:intron | 30.0% |
TTTCTTTGATTGCACAAACA+GGG | + | chr8_3:2303009-2303028 | Msa1269080:intron | 30.0% | |
! | TATTGAAAAGTTGATCTCTC+TGG | - | chr8_3:2303180-2303199 | None:intergenic | 30.0% |
TTGCATAAATCTTCCGAATA+AGG | - | chr8_3:2303375-2303394 | None:intergenic | 30.0% | |
TGGAAAAGAGCTAGATTTAA+CGG | + | chr8_3:2303415-2303434 | Msa1269080:CDS | 30.0% | |
!! | GACAAATTGGTTTCTGAAAT+TGG | + | chr8_3:2303473-2303492 | Msa1269080:exon | 30.0% |
!! | TGGTTTCTGAAATTGGAATA+TGG | + | chr8_3:2303480-2303499 | Msa1269080:exon | 30.0% |
GCTTATTATTTGTGTTGTGT+TGG | + | chr8_3:2303514-2303533 | Msa1269080:three_prime_UTR | 30.0% | |
! | TTTTGCATCTACTTGTGTTT+TGG | + | chr8_3:2303696-2303715 | Msa1269080:three_prime_UTR | 30.0% |
CTGATGTATTTAACCGAAAT+AGG | + | chr8_3:2303857-2303876 | Msa1269080:three_prime_UTR | 30.0% | |
GTATTTAACCGAAATAGGTT+AGG | + | chr8_3:2303862-2303881 | Msa1269080:three_prime_UTR | 30.0% | |
CGTTTCTCTAATGTATTTCA+TGG | + | chr8_3:2303898-2303917 | Msa1269080:three_prime_UTR | 30.0% | |
TAAAACTAAAACTTCGGTGA+AGG | - | chr8_3:2303956-2303975 | None:intergenic | 30.0% | |
ATCTATCCCACCCTAAAAAA+AGG | + | chr8_3:2300236-2300255 | Msa1269080:five_prime_UTR | 35.0% | |
!!! | TCTAGACCTTTTTTTAGGGT+GGG | - | chr8_3:2300245-2300264 | None:intergenic | 35.0% |
!!! | TTCTAGACCTTTTTTTAGGG+TGG | - | chr8_3:2300246-2300265 | None:intergenic | 35.0% |
GTGAAAAGGATGTTTGTCAA+AGG | - | chr8_3:2300342-2300361 | None:intergenic | 35.0% | |
TTGGACCATGAAAAGTGAAA+AGG | - | chr8_3:2300356-2300375 | None:intergenic | 35.0% | |
TCTCTTTAATGGGAAGTTGT+TGG | - | chr8_3:2300375-2300394 | None:intergenic | 35.0% | |
! | GCAAAAGTGCATCTCTTTAA+TGG | - | chr8_3:2300386-2300405 | None:intergenic | 35.0% |
AATATCAATGTAGAAGCTGC+TGG | + | chr8_3:2300573-2300592 | Msa1269080:CDS | 35.0% | |
GGAAATCCTTACTATGCAAA+TGG | + | chr8_3:2300639-2300658 | Msa1269080:CDS | 35.0% | |
!! | CAAATGGCTTTAATGCTTAC+TGG | + | chr8_3:2300655-2300674 | Msa1269080:CDS | 35.0% |
ACTTACTGTTGCTAGAACTT+GGG | + | chr8_3:2300752-2300771 | Msa1269080:CDS | 35.0% | |
AAACCAGGAGAATATTGCAA+AGG | - | chr8_3:2300801-2300820 | None:intergenic | 35.0% | |
TCTTAACCATCCTTGAGAAA+GGG | + | chr8_3:2300906-2300925 | Msa1269080:intron | 35.0% | |
!! | TTCTATGTTGGTTGGTTTGA+AGG | + | chr8_3:2301097-2301116 | Msa1269080:intron | 35.0% |
!! | TCTATGTTGGTTGGTTTGAA+GGG | + | chr8_3:2301098-2301117 | Msa1269080:intron | 35.0% |
! | AACTGGGCTAGAAGTAATAA+TGG | + | chr8_3:2301221-2301240 | Msa1269080:CDS | 35.0% |
TTTAGGAACCCTGTTGTTAA+AGG | + | chr8_3:2301272-2301291 | Msa1269080:CDS | 35.0% | |
! | GAACTTCTTTTGTCTTTGCT+TGG | + | chr8_3:2301330-2301349 | Msa1269080:intron | 35.0% |
!! | CTCTGAGATTAATTGGTTGT+TGG | - | chr8_3:2301618-2301637 | None:intergenic | 35.0% |
CAACAACCAATTAATCTCAG+AGG | + | chr8_3:2301616-2301635 | Msa1269080:intron | 35.0% | |
! | AACAGGTACAACAGTTTTAC+TGG | + | chr8_3:2301802-2301821 | Msa1269080:CDS | 35.0% |
CAAAGATGATCCAACAATCA+TGG | + | chr8_3:2301834-2301853 | Msa1269080:CDS | 35.0% | |
ACAGTCAATGAGAGGAATAA+AGG | - | chr8_3:2302007-2302026 | None:intergenic | 35.0% | |
TGGACAAGTTTCACAAATCA+CGG | + | chr8_3:2302341-2302360 | Msa1269080:intron | 35.0% | |
TATAGCATGTCCTTGAAATC+AGG | - | chr8_3:2302368-2302387 | None:intergenic | 35.0% | |
CTTTAGTGAAGTCCATTGAT+AGG | + | chr8_3:2302452-2302471 | Msa1269080:CDS | 35.0% | |
GTCCCTATGTTGTTAATAGT+AGG | - | chr8_3:2302547-2302566 | None:intergenic | 35.0% | |
! | AATGGGAGTTCTCGAATTTT+GGG | - | chr8_3:2302688-2302707 | None:intergenic | 35.0% |
! | AAATGGGAGTTCTCGAATTT+TGG | - | chr8_3:2302689-2302708 | None:intergenic | 35.0% |
! | AGCTTGCATTTTTGAACAAC+TGG | + | chr8_3:2303056-2303075 | Msa1269080:CDS | 35.0% |
CCAAATTCTGCTACTAGAAT+TGG | - | chr8_3:2303124-2303143 | None:intergenic | 35.0% | |
CCAATTCTAGTAGCAGAATT+TGG | + | chr8_3:2303121-2303140 | Msa1269080:CDS | 35.0% | |
CGCATATATCTTGTAGTACA+CGG | - | chr8_3:2303203-2303222 | None:intergenic | 35.0% | |
GGAAATAGAGGAAGACAAAT+TGG | + | chr8_3:2303460-2303479 | Msa1269080:CDS | 35.0% | |
ATACATCAGCAAACACAATC+TGG | - | chr8_3:2303846-2303865 | None:intergenic | 35.0% | |
GTGGTAAGACTTAAGAGGAA+AGG | - | chr8_3:2300408-2300427 | None:intergenic | 40.0% | |
AGTGAGTGGTAAGACTTAAG+AGG | - | chr8_3:2300413-2300432 | None:intergenic | 40.0% | |
! | ACACTCTTGATGGACCAAAA+TGG | - | chr8_3:2300550-2300569 | None:intergenic | 40.0% |
!!! | GATGGTTTTGTGAGAACAAG+AGG | + | chr8_3:2300597-2300616 | Msa1269080:CDS | 40.0% |
TGATCCATCTCAGAGATTCA+AGG | + | chr8_3:2300695-2300714 | Msa1269080:CDS | 40.0% | |
! | GAAACCTTGAATCTCTGAGA+TGG | - | chr8_3:2300702-2300721 | None:intergenic | 40.0% |
TTCTAGCAACAGTAAGTCCA+TGG | - | chr8_3:2300749-2300768 | None:intergenic | 40.0% | |
GACTTACTGTTGCTAGAACT+TGG | + | chr8_3:2300751-2300770 | Msa1269080:CDS | 40.0% | |
AGTCCTTTGCAATATTCTCC+TGG | + | chr8_3:2300795-2300814 | Msa1269080:CDS | 40.0% | |
GTCTTAACCATCCTTGAGAA+AGG | + | chr8_3:2300905-2300924 | Msa1269080:intron | 40.0% | |
!! | CTATGTTGGTTGGTTTGAAG+GGG | + | chr8_3:2301099-2301118 | Msa1269080:intron | 40.0% |
! | ATATCTGAGGCTAGAAAGCA+TGG | + | chr8_3:2301134-2301153 | Msa1269080:CDS | 40.0% |
GAAGAAGCAGTATGTGAACT+GGG | + | chr8_3:2301205-2301224 | Msa1269080:CDS | 40.0% | |
ATGATCCAACAATCATGGCA+TGG | + | chr8_3:2301839-2301858 | Msa1269080:CDS | 40.0% | |
TGATCCAACAATCATGGCAT+GGG | + | chr8_3:2301840-2301859 | Msa1269080:CDS | 40.0% | |
! | TGAGAGGAATAAAGGTGTAG+TGG | - | chr8_3:2301999-2302018 | None:intergenic | 40.0% |
CATCTATCACAGTCAATGAG+AGG | - | chr8_3:2302015-2302034 | None:intergenic | 40.0% | |
GGACAAGTTTCACAAATCAC+GGG | + | chr8_3:2302342-2302361 | Msa1269080:intron | 40.0% | |
TTGATTATAGGGCTGGATCA+CGG | + | chr8_3:2302420-2302439 | Msa1269080:intron | 40.0% | |
AGGAATCACTTATTGGAAGC+TGG | + | chr8_3:2302472-2302491 | Msa1269080:CDS | 40.0% | |
TTATTGGAAGCTGGACTTGA+AGG | + | chr8_3:2302481-2302500 | Msa1269080:CDS | 40.0% | |
TATTGGAAGCTGGACTTGAA+GGG | + | chr8_3:2302482-2302501 | Msa1269080:CDS | 40.0% | |
ATGGACAATCAACACCTCAA+AGG | + | chr8_3:2302509-2302528 | Msa1269080:CDS | 40.0% | |
GGATTGAATTTGGTCCTTTG+AGG | - | chr8_3:2302526-2302545 | None:intergenic | 40.0% | |
TTGGTCGGGATAACAATGAA+CGG | - | chr8_3:2302614-2302633 | None:intergenic | 40.0% | |
TTCATTGTTATCCCGACCAA+TGG | + | chr8_3:2302614-2302633 | Msa1269080:CDS | 40.0% | |
TTAGAGCATATTGTGCGTCT+AGG | - | chr8_3:2303096-2303115 | None:intergenic | 40.0% | |
AGATATATGCGTCTGCGAAA+AGG | + | chr8_3:2303212-2303231 | Msa1269080:CDS | 40.0% | |
GATATATGCGTCTGCGAAAA+GGG | + | chr8_3:2303213-2303232 | Msa1269080:CDS | 40.0% | |
ATATATGCGTCTGCGAAAAG+GGG | + | chr8_3:2303214-2303233 | Msa1269080:CDS | 40.0% | |
TTCTGGCAACTTCTTACAGA+AGG | + | chr8_3:2303259-2303278 | Msa1269080:CDS | 40.0% | |
GCAACTTCTTACAGAAGGAA+TGG | + | chr8_3:2303264-2303283 | Msa1269080:CDS | 40.0% | |
GAGCTAGATTTAACGGAAGA+AGG | + | chr8_3:2303422-2303441 | Msa1269080:CDS | 40.0% | |
TCAGAATGTTTACGTCCAAG+AGG | + | chr8_3:2303578-2303597 | Msa1269080:three_prime_UTR | 40.0% | |
CAGAATGTTTACGTCCAAGA+GGG | + | chr8_3:2303579-2303598 | Msa1269080:three_prime_UTR | 40.0% | |
TTATCGCCATGTCATGCTTT+CGG | + | chr8_3:2303626-2303645 | Msa1269080:three_prime_UTR | 40.0% | |
CACAAAGCCCTAACCTATTT+CGG | - | chr8_3:2303873-2303892 | None:intergenic | 40.0% | |
AATGTAGAAGCTGCTGGTGA+TGG | + | chr8_3:2300579-2300598 | Msa1269080:CDS | 45.0% | |
AGAACTTGGGCTTTCAGTGA+TGG | + | chr8_3:2300765-2300784 | Msa1269080:CDS | 45.0% | |
ATTACGAGGACCCTTTCTCA+AGG | - | chr8_3:2300919-2300938 | None:intergenic | 45.0% | |
GGAAGAAGCAGTATGTGAAC+TGG | + | chr8_3:2301204-2301223 | Msa1269080:CDS | 45.0% | |
TTCCACAGACTGTTCTCAAC+AGG | + | chr8_3:2301785-2301804 | Msa1269080:intron | 45.0% | |
TACCTGTTGAGAACAGTCTG+TGG | - | chr8_3:2301790-2301809 | None:intergenic | 45.0% | |
GGGAGCTTATGAATGAACCT+AGG | + | chr8_3:2301860-2301879 | Msa1269080:CDS | 45.0% | |
TCCTTCAGGAAGGACTATTC+AGG | + | chr8_3:2301894-2301913 | Msa1269080:CDS | 45.0% | |
ACCTGAATAGTCCTTCCTGA+AGG | - | chr8_3:2301898-2301917 | None:intergenic | 45.0% | |
AAATCACGGGCCTGATTTCA+AGG | + | chr8_3:2302355-2302374 | Msa1269080:intron | 45.0% | |
AAACAGTCAGACTCAGCTCA+TGG | - | chr8_3:2302395-2302414 | None:intergenic | 45.0% | |
! | GCTGGACTTGAAGGGTTTTA+TGG | + | chr8_3:2302490-2302509 | Msa1269080:CDS | 45.0% |
ATTGCCAACAATCGAATCCC+AGG | + | chr8_3:2302574-2302593 | Msa1269080:CDS | 45.0% | |
GACAGAATCATGGTGAGCTA+TGG | - | chr8_3:2302909-2302928 | None:intergenic | 45.0% | |
GGAATGGAATCTTTCGACGA+TGG | + | chr8_3:2303280-2303299 | Msa1269080:CDS | 45.0% | |
GAATCTTTCGACGATGGCTA+TGG | + | chr8_3:2303286-2303305 | Msa1269080:CDS | 45.0% | |
GATGGCTATGGAATATCGCT+TGG | + | chr8_3:2303298-2303317 | Msa1269080:CDS | 45.0% | |
AGATCGCTAATGAACGACGA+TGG | + | chr8_3:2303395-2303414 | Msa1269080:CDS | 45.0% | |
TTCCGTGAAGCAACAAGCCA+TGG | + | chr8_3:2300729-2300748 | Msa1269080:CDS | 50.0% | |
!! | GTCCATGGCTTGTTGCTTCA+CGG | - | chr8_3:2300734-2300753 | None:intergenic | 50.0% |
ACTTGGGCTTTCAGTGATGG+TGG | + | chr8_3:2300768-2300787 | Msa1269080:CDS | 50.0% | |
CTTAAACTTCCGGTTCCCTG+CGG | + | chr8_3:2301020-2301039 | Msa1269080:intron | 50.0% | |
GAACAATTTCCGCAGGGAAC+CGG | - | chr8_3:2301032-2301051 | None:intergenic | 50.0% | |
!! | GTTGGTTGGTTTGAAGGGGT+TGG | + | chr8_3:2301103-2301122 | Msa1269080:intron | 50.0% |
GAACAGTCTGTGGAAGTTCC+AGG | - | chr8_3:2301780-2301799 | None:intergenic | 50.0% | |
AGCTCCCATGCCATGATTGT+TGG | - | chr8_3:2301847-2301866 | None:intergenic | 50.0% | |
GAAGGATCTGACGTACACCT+AGG | - | chr8_3:2301880-2301899 | None:intergenic | 50.0% | |
AGGTGTACGTCAGATCCTTC+AGG | + | chr8_3:2301880-2301899 | Msa1269080:CDS | 50.0% | |
GTACGTCAGATCCTTCAGGA+AGG | + | chr8_3:2301884-2301903 | Msa1269080:CDS | 50.0% | |
ATAGGGCTGGATCACGGAAA+TGG | + | chr8_3:2302426-2302445 | Msa1269080:intron | 50.0% | |
GATGCCTGGGATTCGATTGT+TGG | - | chr8_3:2302581-2302600 | None:intergenic | 50.0% | |
CGGTTGCAAAATCGATGCCT+GGG | - | chr8_3:2302594-2302613 | None:intergenic | 50.0% | |
ACGGTTGCAAAATCGATGCC+TGG | - | chr8_3:2302595-2302614 | None:intergenic | 50.0% | |
! | GAGAAGCCGAAAGCATGACA+TGG | - | chr8_3:2303635-2303654 | None:intergenic | 50.0% |
CGAGGACCCTTTCTCAAGGA+TGG | - | chr8_3:2300915-2300934 | None:intergenic | 55.0% | |
TATGCGTCTGCGAAAAGGGG+AGG | + | chr8_3:2303217-2303236 | Msa1269080:CDS | 55.0% | |
CAGAACAATGCTCCACTCGC+TGG | - | chr8_3:2303244-2303263 | None:intergenic | 55.0% | |
!! | CAGCGAGTGGAGCATTGTTC+TGG | + | chr8_3:2303242-2303261 | Msa1269080:CDS | 55.0% |
! | TCGCGCGTTGGTGGAAATAG+AGG | + | chr8_3:2303448-2303467 | Msa1269080:CDS | 55.0% |
AAAAGGGGAGGTCCAGCGAG+TGG | + | chr8_3:2303229-2303248 | Msa1269080:CDS | 60.0% | |
GGAAGAAGGTCTTCGCGCGT+TGG | + | chr8_3:2303436-2303455 | Msa1269080:CDS | 60.0% | |
AGAAGGTCTTCGCGCGTTGG+TGG | + | chr8_3:2303439-2303458 | Msa1269080:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 2300232 | 2303986 | 2300232 | ID=Msa1269080;Name=Msa1269080 |
chr8_3 | mRNA | 2300232 | 2303986 | 2300232 | ID=Msa1269080-mRNA-1;Parent=Msa1269080;Name=Msa1269080-mRNA-1;_AED=0.03;_eAED=0.03;_QI=281|1|1|1|1|1|5|497|438 |
chr8_3 | exon | 2300232 | 2300842 | 2300232 | ID=Msa1269080-mRNA-1:exon:701;Parent=Msa1269080-mRNA-1 |
chr8_3 | exon | 2301119 | 2301316 | 2301119 | ID=Msa1269080-mRNA-1:exon:702;Parent=Msa1269080-mRNA-1 |
chr8_3 | exon | 2301793 | 2301915 | 2301793 | ID=Msa1269080-mRNA-1:exon:703;Parent=Msa1269080-mRNA-1 |
chr8_3 | exon | 2302430 | 2302635 | 2302430 | ID=Msa1269080-mRNA-1:exon:704;Parent=Msa1269080-mRNA-1 |
chr8_3 | exon | 2303030 | 2303986 | 2303030 | ID=Msa1269080-mRNA-1:exon:705;Parent=Msa1269080-mRNA-1 |
chr8_3 | five_prime_UTR | 2300232 | 2300512 | 2300232 | ID=Msa1269080-mRNA-1:five_prime_utr;Parent=Msa1269080-mRNA-1 |
chr8_3 | CDS | 2300513 | 2300842 | 2300513 | ID=Msa1269080-mRNA-1:cds;Parent=Msa1269080-mRNA-1 |
chr8_3 | CDS | 2301119 | 2301316 | 2301119 | ID=Msa1269080-mRNA-1:cds;Parent=Msa1269080-mRNA-1 |
chr8_3 | CDS | 2301793 | 2301915 | 2301793 | ID=Msa1269080-mRNA-1:cds;Parent=Msa1269080-mRNA-1 |
chr8_3 | CDS | 2302430 | 2302635 | 2302430 | ID=Msa1269080-mRNA-1:cds;Parent=Msa1269080-mRNA-1 |
chr8_3 | CDS | 2303030 | 2303489 | 2303030 | ID=Msa1269080-mRNA-1:cds;Parent=Msa1269080-mRNA-1 |
chr8_3 | three_prime_UTR | 2303490 | 2303986 | 2303490 | ID=Msa1269080-mRNA-1:three_prime_utr;Parent=Msa1269080-mRNA-1 |
Gene Sequence |
Protein sequence |