Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795390 | G7KDD8 | 95.198 | 1062 | 51 | 0 | 1 | 1062 | 1 | 1062 | 0.0 | 1996 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011850 | Msa0795390 | 0.826043 | 3.368634e-54 | -8.615850e-47 |
| Msa0093400 | Msa0795390 | 0.816728 | 4.761558e-52 | -8.615850e-47 |
| Msa0101810 | Msa0795390 | -0.803607 | 3.216153e-49 | -8.615850e-47 |
| Msa0102750 | Msa0795390 | 0.818382 | 2.018382e-52 | -8.615850e-47 |
| Msa0105420 | Msa0795390 | 0.837325 | 5.555208e-57 | -8.615850e-47 |
| Msa0114540 | Msa0795390 | -0.803597 | 3.231670e-49 | -8.615850e-47 |
| Msa0628360 | Msa0795390 | 0.820270 | 7.493425e-53 | -8.615850e-47 |
| Msa0647130 | Msa0795390 | 0.833456 | 5.276991e-56 | -8.615850e-47 |
| Msa0648520 | Msa0795390 | 0.840441 | 8.678103e-58 | -8.615850e-47 |
| Msa0691050 | Msa0795390 | 0.836739 | 7.841752e-57 | -8.615850e-47 |
| Msa0753340 | Msa0795390 | 0.839843 | 1.242989e-57 | -8.615850e-47 |
| Msa0757950 | Msa0795390 | 0.805025 | 1.629261e-49 | -8.615850e-47 |
| Msa0795390 | Msa0810480 | 0.809415 | 1.914012e-50 | -8.615850e-47 |
| Msa0795390 | Msa0825230 | 0.804600 | 1.998873e-49 | -8.615850e-47 |
| Msa0795390 | Msa0832570 | 0.838746 | 2.394861e-57 | -8.615850e-47 |
| Msa0795390 | Msa0870530 | 0.800488 | 1.407761e-48 | -8.615850e-47 |
| Msa0795390 | Msa0896220 | 0.801227 | 9.945791e-49 | -8.615850e-47 |
| Msa0795390 | Msa0903700 | 0.803483 | 3.412608e-49 | -8.615850e-47 |
| Msa0795390 | Msa0908050 | 0.820036 | 8.478170e-53 | -8.615850e-47 |
| Msa0795390 | Msa0930780 | 0.804554 | 2.043177e-49 | -8.615850e-47 |
| Msa0795390 | Msa1019020 | 0.803955 | 2.722351e-49 | -8.615850e-47 |
| Msa0795390 | Msa1020710 | 0.813461 | 2.530120e-51 | -8.615850e-47 |
| Msa0795390 | Msa1024740 | 0.825761 | 3.930214e-54 | -8.615850e-47 |
| Msa0795390 | Msa1104000 | 0.819564 | 1.086754e-52 | -8.615850e-47 |
| Msa0795390 | Msa1108790 | 0.813044 | 3.124022e-51 | -8.615850e-47 |
| Msa0795390 | Msa1143620 | 0.801023 | 1.094728e-48 | -8.615850e-47 |
| Msa0795390 | Msa1152510 | 0.834974 | 2.197598e-56 | -8.615850e-47 |
| Msa0795390 | Msa1179940 | 0.821247 | 4.467649e-53 | -8.615850e-47 |
| Msa0795390 | Msa1179970 | 0.827499 | 1.512727e-54 | -8.615850e-47 |
| Msa0795390 | Msa1185540 | 0.824820 | 6.562168e-54 | -8.615850e-47 |
| Msa0795390 | Msa1231930 | 0.800560 | 1.361144e-48 | -8.615850e-47 |
| Msa0795390 | Msa1269080 | 0.808180 | 3.514633e-50 | -8.615850e-47 |
| Msa0795390 | Msa1278840 | 0.808034 | 3.775674e-50 | -8.615850e-47 |
| Msa0795390 | Msa1313150 | 0.801209 | 1.003175e-48 | -8.615850e-47 |
| Msa0795390 | Msa1335770 | 0.800785 | 1.224373e-48 | -8.615850e-47 |
| Msa0795390 | Msa1355800 | 0.805890 | 1.072680e-49 | -8.615850e-47 |
| Msa0795390 | Msa1358040 | 0.836869 | 7.264499e-57 | -8.615850e-47 |
| Msa0795390 | Msa1409870 | 0.805381 | 1.372115e-49 | -8.615850e-47 |
| Msa0795390 | Msa1423880 | 0.811789 | 5.872406e-51 | -8.615850e-47 |
| Msa0795390 | Msa1431430 | 0.823464 | 1.365579e-53 | -8.615850e-47 |
| Msa0795390 | Msa1437460 | 0.816470 | 5.440090e-52 | -8.615850e-47 |
| Msa0142470 | Msa0795390 | 0.803528 | 3.339659e-49 | -8.615850e-47 |
| Msa0165430 | Msa0795390 | 0.809731 | 1.636606e-50 | -8.615850e-47 |
| Msa0193650 | Msa0795390 | 0.827060 | 1.927385e-54 | -8.615850e-47 |
| Msa0222920 | Msa0795390 | 0.801265 | 9.768518e-49 | -8.615850e-47 |
| Msa0227510 | Msa0795390 | 0.820153 | 7.972467e-53 | -8.615850e-47 |
| Msa0388960 | Msa0795390 | 0.807586 | 4.702375e-50 | -8.615850e-47 |
| Msa0448550 | Msa0795390 | -0.804740 | 1.868106e-49 | -8.615850e-47 |
| Msa0452960 | Msa0795390 | 0.809426 | 1.903673e-50 | -8.615850e-47 |
| Msa0248970 | Msa0795390 | 0.805751 | 1.147556e-49 | -8.615850e-47 |
| Msa0266000 | Msa0795390 | -0.804422 | 2.177117e-49 | -8.615850e-47 |
| Msa0283450 | Msa0795390 | 0.809647 | 1.706399e-50 | -8.615850e-47 |
| Msa0283520 | Msa0795390 | 0.803082 | 4.131417e-49 | -8.615850e-47 |
| Msa0311580 | Msa0795390 | 0.807824 | 4.185446e-50 | -8.615850e-47 |
| Msa0313990 | Msa0795390 | 0.822021 | 2.959129e-53 | -8.615850e-47 |
| Msa0332000 | Msa0795390 | 0.806199 | 9.239279e-50 | -8.615850e-47 |
| Msa0335040 | Msa0795390 | 0.820197 | 7.788081e-53 | -8.615850e-47 |
| Msa0341910 | Msa0795390 | 0.810129 | 1.343872e-50 | -8.615850e-47 |
| Msa0356890 | Msa0795390 | -0.817711 | 2.862678e-52 | -8.615850e-47 |
| Msa0574890 | Msa0795390 | 0.810057 | 1.392427e-50 | -8.615850e-47 |
| Msa0587940 | Msa0795390 | 0.806054 | 9.910385e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795390 | MtrunA17_Chr5g0397721 | 95.198 | 1062 | 51 | 0 | 1 | 1062 | 1 | 1062 | 0.0 | 1996 |
| Msa0795390 | MtrunA17_Chr8g0386571 | 63.056 | 1080 | 336 | 10 | 1 | 1062 | 1 | 1035 | 0.0 | 1262 |
| Msa0795390 | MtrunA17_Chr1g0203361 | 36.842 | 779 | 417 | 16 | 1 | 769 | 1 | 714 | 2.23e-135 | 430 |
| Msa0795390 | MtrunA17_Chr1g0203361 | 69.091 | 55 | 17 | 0 | 1007 | 1061 | 798 | 852 | 1.88e-14 | 78.2 |
| Msa0795390 | MtrunA17_Chr3g0115391 | 26.135 | 727 | 431 | 20 | 1 | 670 | 1 | 678 | 1.81e-46 | 182 |
| Msa0795390 | MtrunA17_Chr1g0179821 | 25.370 | 473 | 274 | 14 | 1 | 434 | 1 | 433 | 3.04e-25 | 113 |
| Msa0795390 | MtrunA17_Chr1g0179821 | 25.688 | 545 | 312 | 18 | 566 | 1058 | 776 | 1279 | 6.74e-11 | 67.0 |
| Msa0795390 | MtrunA17_Chr1g0197491 | 22.961 | 466 | 310 | 14 | 1 | 436 | 25 | 471 | 1.97e-17 | 88.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795390 | AT1G63300.1 | 47.393 | 1074 | 508 | 16 | 1 | 1062 | 1 | 1029 | 0.0 | 840 |
| Msa0795390 | AT5G41140.1 | 45.260 | 1076 | 480 | 18 | 1 | 1061 | 1 | 982 | 0.0 | 790 |
| Msa0795390 | AT5G41140.2 | 45.158 | 1074 | 477 | 17 | 1 | 1061 | 1 | 975 | 0.0 | 785 |
| Msa0795390 | AT5G52280.1 | 36.058 | 893 | 447 | 17 | 1 | 886 | 1 | 776 | 2.19e-137 | 436 |
| Msa0795390 | AT5G52280.1 | 61.194 | 67 | 24 | 1 | 995 | 1061 | 788 | 852 | 5.31e-14 | 77.4 |
| Msa0795390 | AT1G22060.2 | 26.630 | 721 | 423 | 21 | 1 | 671 | 1 | 665 | 1.92e-44 | 176 |
| Msa0795390 | AT1G22060.1 | 26.630 | 721 | 423 | 21 | 1 | 671 | 1 | 665 | 1.92e-44 | 176 |
Find 210 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTTCCTTTGACTTTATC+AGG | 0.217694 | 5_3:-7345894 | None:intergenic |
| ATCTTATGTTTCAGATATTA+AGG | 0.227236 | 5_3:-7341630 | None:intergenic |
| CCTCCTCTAATCCTCTGATA+TGG | 0.239596 | 5_3:-7344688 | None:intergenic |
| CTGTATCGCCGTTGCTGAAT+TGG | 0.249416 | 5_3:-7343196 | None:intergenic |
| TACATTGAATTGTTGATAAC+TGG | 0.250301 | 5_3:+7341768 | Msa0795390:five_prime_UTR |
| CTCAGAGCTCGGGTTAAGTA+TGG | 0.260393 | 5_3:+7343737 | Msa0795390:CDS |
| CTCAAGCAAGTGTGTCTCTT+TGG | 0.267898 | 5_3:-7344366 | None:intergenic |
| CCAGCATTGAGAAGAGATTC+AGG | 0.288948 | 5_3:+7345584 | Msa0795390:CDS |
| ATGGGTTTCTAGTACCTTAA+TGG | 0.298162 | 5_3:-7344669 | None:intergenic |
| TCTTTATTTCACTCTTTAGC+TGG | 0.301119 | 5_3:-7345543 | None:intergenic |
| TAGTTGGTGGAGTAGTTGTT+TGG | 0.303733 | 5_3:+7341811 | Msa0795390:five_prime_UTR |
| CTCCTCTAATCCTCTGATAT+GGG | 0.314641 | 5_3:-7344687 | None:intergenic |
| CAAAGCTGAACTTGCTGCTT+TGG | 0.315649 | 5_3:+7343839 | Msa0795390:CDS |
| GTTGATACTCCCTGCGAAAT+TGG | 0.316541 | 5_3:+7343570 | Msa0795390:CDS |
| TAGTTGACTGAAGCTCTTCT+TGG | 0.317857 | 5_3:-7344991 | None:intergenic |
| AGTTGGTGGAGTAGTTGTTT+GGG | 0.320329 | 5_3:+7341812 | Msa0795390:five_prime_UTR |
| CAGAGGATTAGAGGAGGAAA+TGG | 0.321191 | 5_3:+7344694 | Msa0795390:CDS |
| GGAACTCCAGAGCAGAATTA+TGG | 0.323324 | 5_3:+7345957 | Msa0795390:CDS |
| CGTTCTGTTGTTTATTGCTT+TGG | 0.325606 | 5_3:-7343499 | None:intergenic |
| TGTATCGCGTTCGTGTCTAT+TGG | 0.326142 | 5_3:-7344246 | None:intergenic |
| AGCTTGGGGAACAAGTTAAT+AGG | 0.327660 | 5_3:+7345134 | Msa0795390:CDS |
| AGATGTTTCGTTCTTCAAAA+TGG | 0.329139 | 5_3:+7341891 | Msa0795390:exon |
| GCAAGAATCAAATGCTGAAT+TGG | 0.334048 | 5_3:+7344160 | Msa0795390:CDS |
| ACGCAAAAGTGATTGTTTAG+AGG | 0.337322 | 5_3:+7346659 | Msa0795390:three_prime_UTR |
| CTCCAATGGGGATGCCTCTT+GGG | 0.337850 | 5_3:-7343805 | None:intergenic |
| TGCCTCTTGGGAACTTTCCT+TGG | 0.342709 | 5_3:-7343793 | None:intergenic |
| GCTTTCTCTAATCTCTTTGT+TGG | 0.351234 | 5_3:-7342494 | None:intergenic |
| TTCGCAATGCTTCCTCGGCT+TGG | 0.354438 | 5_3:-7344793 | None:intergenic |
| CTCAAATTTGCCGAGGTAGA+AGG | 0.360392 | 5_3:+7346406 | Msa0795390:CDS |
| TGAAACTCACATTGAGAATC+TGG | 0.362265 | 5_3:+7344598 | Msa0795390:CDS |
| CGAAACAGTCAAGTATTATC+AGG | 0.373302 | 5_3:+7342559 | Msa0795390:CDS |
| TCTGCGGCACGAGCCATAAC+TGG | 0.374717 | 5_3:-7343636 | None:intergenic |
| AATGGAGGAGTGAGAAGAAT+AGG | 0.381314 | 5_3:+7341909 | Msa0795390:CDS |
| AAACCAGTTTGTTCCAGTTA+TGG | 0.383737 | 5_3:+7343623 | Msa0795390:CDS |
| TCGAAAATCAGAAGAAGCTT+GGG | 0.384283 | 5_3:+7345119 | Msa0795390:CDS |
| GCTTGGGGAACAAGTTAATA+GGG | 0.389725 | 5_3:+7345135 | Msa0795390:CDS |
| TACTTGACTGTTTCGTATAC+CGG | 0.390138 | 5_3:-7342551 | None:intergenic |
| GAATAAACTAATGTTTATAA+TGG | 0.391060 | 5_3:+7346571 | Msa0795390:three_prime_UTR |
| GAGAAAACTCTCAGCCCTTA+TGG | 0.392278 | 5_3:-7346474 | None:intergenic |
| CAATGCTTCCTCGGCTTGGA+TGG | 0.396921 | 5_3:-7344789 | None:intergenic |
| GAGGCATTAACAGCAGCATT+TGG | 0.397470 | 5_3:-7343663 | None:intergenic |
| TCATTTGCATTGAGAGTCTC+TGG | 0.397576 | 5_3:-7344865 | None:intergenic |
| AACCCATATCAGAGGATTAG+AGG | 0.401973 | 5_3:+7344685 | Msa0795390:CDS |
| AGAGTTTCATCTCTAACTCT+TGG | 0.402659 | 5_3:-7344274 | None:intergenic |
| TCTCCAATGGGGATGCCTCT+TGG | 0.408869 | 5_3:-7343806 | None:intergenic |
| TGTCATTGAAATAACGTTGT+TGG | 0.412602 | 5_3:+7341580 | Msa0795390:five_prime_UTR |
| AAATTCTCTAGCTACCATTA+AGG | 0.413944 | 5_3:+7344655 | Msa0795390:CDS |
| TTGTCTGATTTCTTCGACAA+AGG | 0.415014 | 5_3:-7344081 | None:intergenic |
| TCCTCAGCATTCAAAAGAAA+TGG | 0.416016 | 5_3:+7345678 | Msa0795390:CDS |
| TTCCTTCAATGACGACAATT+CGG | 0.418972 | 5_3:-7346323 | None:intergenic |
| AGACAGAATGTGACAATATC+AGG | 0.419878 | 5_3:+7343988 | Msa0795390:CDS |
| GTGTAAGAACAGAAGGAGTT+AGG | 0.422513 | 5_3:-7341674 | None:intergenic |
| GACCGAATTGTCGTCATTGA+AGG | 0.423001 | 5_3:+7346321 | Msa0795390:CDS |
| ATATCAGAAGAAGTAAGAAA+TGG | 0.423590 | 5_3:+7346262 | Msa0795390:CDS |
| CTGTGACCTGTTTCTCACTT+TGG | 0.434319 | 5_3:-7344036 | None:intergenic |
| ATATTTCAGGTGTTACAATC+AGG | 0.434804 | 5_3:+7342425 | Msa0795390:intron |
| TATTATCAGGATCCGAAGAC+TGG | 0.443472 | 5_3:+7342572 | Msa0795390:CDS |
| TTGGGAACTTTCCTTGGAAA+GGG | 0.444214 | 5_3:-7343787 | None:intergenic |
| AGACTATGAGATATTAAAAC+AGG | 0.445367 | 5_3:+7344475 | Msa0795390:CDS |
| CTCATGTCTCTCTTCCCATC+AGG | 0.446018 | 5_3:+7342798 | Msa0795390:CDS |
| CTCGAAAATCAGAAGAAGCT+TGG | 0.447142 | 5_3:+7345118 | Msa0795390:CDS |
| TAGACGCAGTTCACTTGCTT+CGG | 0.447539 | 5_3:-7344933 | None:intergenic |
| TCTGCTCCAACATTTCTTCG+AGG | 0.449328 | 5_3:-7344199 | None:intergenic |
| CTTGGGAACTTTCCTTGGAA+AGG | 0.451320 | 5_3:-7343788 | None:intergenic |
| AAATTGTCGGTGGGAGAATC+CGG | 0.455464 | 5_3:+7342532 | Msa0795390:CDS |
| GAGGAGATGAACACTCATAT+TGG | 0.455757 | 5_3:-7344556 | None:intergenic |
| ACGATGCCAAAGTGAGAAAC+AGG | 0.457175 | 5_3:+7344030 | Msa0795390:CDS |
| TGTTTAACTGTTCCTGCAGT+TGG | 0.458017 | 5_3:-7344532 | None:intergenic |
| GACACTCTTGAGGTTTCTTA+CGG | 0.459347 | 5_3:-7346452 | None:intergenic |
| CCAGCTCCATAATTCTGCTC+TGG | 0.462993 | 5_3:-7345963 | None:intergenic |
| ACAAAGTGGAGGAATTTAAT+CGG | 0.463277 | 5_3:+7345989 | Msa0795390:CDS |
| TGAGTCTCTCAATCTCCAAT+GGG | 0.465745 | 5_3:-7343818 | None:intergenic |
| AAACCTCAAGAGTGTCCATA+AGG | 0.465783 | 5_3:+7346459 | Msa0795390:CDS |
| CCTTTACAATTTGCTTCCTG+AGG | 0.465895 | 5_3:-7343899 | None:intergenic |
| GGTCTTTCGCAATGCTTCCT+CGG | 0.468804 | 5_3:-7344798 | None:intergenic |
| AGAAGAAGTAAGAAATGGAT+TGG | 0.469512 | 5_3:+7346267 | Msa0795390:CDS |
| TATCAAAAGCTAGCGCAGTC+GGG | 0.470515 | 5_3:+7342729 | Msa0795390:CDS |
| CTTTATTTCACTCTTTAGCT+GGG | 0.470948 | 5_3:-7345542 | None:intergenic |
| CTCTTAAATGAACAAGTAGA+AGG | 0.471330 | 5_3:+7345220 | Msa0795390:CDS |
| AGAGACATGAGAGGGCTTTG+TGG | 0.474075 | 5_3:-7342786 | None:intergenic |
| TGGCATCGTCCATGCGTTTG+TGG | 0.475881 | 5_3:-7344016 | None:intergenic |
| CTAGCTTATGTACAAGCTTG+TGG | 0.476951 | 5_3:-7344502 | None:intergenic |
| GCTTCAATTCAATGCTACTA+AGG | 0.477435 | 5_3:+7341949 | Msa0795390:CDS |
| GAGTTTCATCTCTAACTCTT+GGG | 0.477504 | 5_3:-7344273 | None:intergenic |
| CACGCGGACAATAGTCTTAG+TGG | 0.488677 | 5_3:+7346292 | Msa0795390:CDS |
| GAGCCATAACTGGAACAAAC+TGG | 0.492152 | 5_3:-7343626 | None:intergenic |
| TTGTCTTTCACCTTCTACCT+CGG | 0.494056 | 5_3:-7346416 | None:intergenic |
| TCAAGTTCTGATGACAGCTC+TGG | 0.494881 | 5_3:+7343546 | Msa0795390:CDS |
| TGAATTGGTTCTTGCCGTGC+AGG | 0.496687 | 5_3:+7344175 | Msa0795390:CDS |
| CCTGAATCTCTTCTCAATGC+TGG | 0.497104 | 5_3:-7345584 | None:intergenic |
| CACAATTGCGTCATTGAAGA+AGG | 0.500768 | 5_3:+7345345 | Msa0795390:CDS |
| TCAATGTCATTCATAGCAGC+AGG | 0.501038 | 5_3:-7344578 | None:intergenic |
| AACAACTTCATCTATGAAGA+AGG | 0.501525 | 5_3:+7345930 | Msa0795390:CDS |
| AGCCCTTATGGACACTCTTG+AGG | 0.501555 | 5_3:-7346462 | None:intergenic |
| AAGAGTGAAATAAAGAAGAA+AGG | 0.501656 | 5_3:+7345550 | Msa0795390:CDS |
| AGTATGGGTGATTCAACAAA+CGG | 0.501745 | 5_3:+7343753 | Msa0795390:CDS |
| CTTTACAATTTGCTTCCTGA+GGG | 0.502149 | 5_3:-7343898 | None:intergenic |
| CATTATCTTGAAAGATGAAA+GGG | 0.502436 | 5_3:+7343956 | Msa0795390:CDS |
| TGCTGCTTTGGCGAGGCACA+TGG | 0.503620 | 5_3:+7343851 | Msa0795390:CDS |
| TTCATCTATGAAGAAGGAAA+AGG | 0.506959 | 5_3:+7345936 | Msa0795390:CDS |
| TTGGTGTTGTCAATAGTTCC+TGG | 0.507047 | 5_3:+7342458 | Msa0795390:CDS |
| TCAATAGTTCCTGGTGACAT+TGG | 0.514235 | 5_3:+7342467 | Msa0795390:CDS |
| TTTACATCAGAAATCACAAT+GGG | 0.515966 | 5_3:+7343701 | Msa0795390:CDS |
| TTGAGTCTCTCAATCTCCAA+TGG | 0.520575 | 5_3:-7343819 | None:intergenic |
| GAAGGAAAGAAACAAATCAA+TGG | 0.521587 | 5_3:+7346339 | Msa0795390:CDS |
| AAAGTCAAAGGAAACTGCAT+TGG | 0.521988 | 5_3:+7345900 | Msa0795390:CDS |
| CTGCAGTGTATAGCTGTAGC+AGG | 0.523315 | 5_3:+7346515 | Msa0795390:three_prime_UTR |
| TTATCAAAAGCTAGCGCAGT+CGG | 0.526715 | 5_3:+7342728 | Msa0795390:CDS |
| TCACATTGAGAATCTGGAAA+AGG | 0.528730 | 5_3:+7344604 | Msa0795390:CDS |
| TTCTCAAAATGCCCTTTCCA+AGG | 0.530388 | 5_3:+7343776 | Msa0795390:CDS |
| CGTCATCTAGCTCAGAGCTC+GGG | 0.531611 | 5_3:+7343727 | Msa0795390:CDS |
| ATTGTAAAGGAAAGCAAAAG+AGG | 0.532163 | 5_3:+7343912 | Msa0795390:CDS |
| TAACATTTCAAATATCAAGA+AGG | 0.533108 | 5_3:-7346611 | None:intergenic |
| CCTCAGGAAGCAAATTGTAA+AGG | 0.534111 | 5_3:+7343899 | Msa0795390:CDS |
| TACCTTTGATGAAAATGAGA+AGG | 0.534206 | 5_3:+7344892 | Msa0795390:CDS |
| TTCCCAAGAGGCATCCCCAT+TGG | 0.536163 | 5_3:+7343803 | Msa0795390:CDS |
| ATAAACAACAGAACGTCTAG+TGG | 0.536249 | 5_3:+7343507 | Msa0795390:CDS |
| TGCTTCGGTCAATGCTCTCA+TGG | 0.536262 | 5_3:-7344918 | None:intergenic |
| GCAGGTGTACTTTGCAGCAG+TGG | 0.537617 | 5_3:+7346533 | Msa0795390:three_prime_UTR |
| TATTTCAGGTGTTACAATCA+GGG | 0.542788 | 5_3:+7342426 | Msa0795390:intron |
| AGAAATCTTAAGAACTGACT+TGG | 0.543909 | 5_3:+7345246 | Msa0795390:CDS |
| CGGTTCAAGATGGAAATTGT+CGG | 0.544548 | 5_3:+7342519 | Msa0795390:CDS |
| TCTGAAACATTGTTACATCA+AGG | 0.545037 | 5_3:+7345295 | Msa0795390:CDS |
| TCGTCATCTAGCTCAGAGCT+CGG | 0.545721 | 5_3:+7343726 | Msa0795390:CDS |
| TTGTATCTATTTGATTGCAA+AGG | 0.545922 | 5_3:-7345042 | None:intergenic |
| GCAGGACCTCGAAGAAATGT+TGG | 0.547824 | 5_3:+7344193 | Msa0795390:CDS |
| GGACGCAACCAACTTTCTGA+TGG | 0.547926 | 5_3:+7345616 | Msa0795390:CDS |
| ATGGTGAAATTGAAATGTAC+AGG | 0.549704 | 5_3:+7344408 | Msa0795390:CDS |
| TAGACTATTGAAGTCAGAGT+TGG | 0.550029 | 5_3:+7345435 | Msa0795390:CDS |
| GAGAAAGCTACGGTTCAAGA+TGG | 0.550233 | 5_3:+7342509 | Msa0795390:CDS |
| CAGCATTGAGAAGAGATTCA+GGG | 0.550761 | 5_3:+7345585 | Msa0795390:CDS |
| AACTGGAACAAACTGGTTTG+TGG | 0.550964 | 5_3:-7343619 | None:intergenic |
| CCAGAGCAGAATTATGGAGC+TGG | 0.551430 | 5_3:+7345963 | Msa0795390:CDS |
| TCAGATACAGCAGATGTTGG+TGG | 0.553151 | 5_3:+7345072 | Msa0795390:CDS |
| GTTGGTCTTCCAATGTCACC+AGG | 0.557975 | 5_3:-7342476 | None:intergenic |
| GGAACAAACTGGTTTGTGGT+GGG | 0.559149 | 5_3:-7343615 | None:intergenic |
| GGCGAGGCACATGGATGTGT+CGG | 0.560632 | 5_3:+7343860 | Msa0795390:CDS |
| AACCTCAAGAGTGTCCATAA+GGG | 0.560828 | 5_3:+7346460 | Msa0795390:CDS |
| CTGAACTTGCTGCTTTGGCG+AGG | 0.561486 | 5_3:+7343844 | Msa0795390:CDS |
| ACAATCAGGGGTGGATGCAT+TGG | 0.564604 | 5_3:+7342439 | Msa0795390:CDS |
| GCACATGGATGTGTCGGACA+TGG | 0.564836 | 5_3:+7343866 | Msa0795390:CDS |
| TCATTATCTTGAAAGATGAA+AGG | 0.568558 | 5_3:+7343955 | Msa0795390:CDS |
| ACTTATGAAGAAATCAATTG+AGG | 0.571259 | 5_3:+7345270 | Msa0795390:CDS |
| ACATGGAACTACAGACCCTC+AGG | 0.571689 | 5_3:+7343883 | Msa0795390:CDS |
| CTGCTACAGCTATACACTGC+AGG | 0.574967 | 5_3:-7346514 | None:intergenic |
| GCTAGAGCAAAGCCAACTGC+AGG | 0.575549 | 5_3:+7344520 | Msa0795390:CDS |
| TGAAGCTGATATAGAAGCAA+TGG | 0.579079 | 5_3:+7344736 | Msa0795390:CDS |
| AGTGAGAAACAGGTCACAGT+TGG | 0.580096 | 5_3:+7344040 | Msa0795390:CDS |
| TCAGAGCTCGGGTTAAGTAT+GGG | 0.581632 | 5_3:+7343738 | Msa0795390:CDS |
| TGCGTCATTGAAGAAGGAAG+CGG | 0.583079 | 5_3:+7345351 | Msa0795390:CDS |
| CTTCCCATCAGGAATTCTCA+TGG | 0.584077 | 5_3:+7342809 | Msa0795390:CDS |
| GAATCTGGAAAAGGAACTCA+AGG | 0.586220 | 5_3:+7344613 | Msa0795390:CDS |
| AAAGGAAAGCAAAAGAGGGC+AGG | 0.588422 | 5_3:+7343917 | Msa0795390:CDS |
| TAAATCATGCATCGGTGTCG+AGG | 0.589755 | 5_3:-7343682 | None:intergenic |
| ACGTAACGTGTAAGAACAGA+AGG | 0.591838 | 5_3:-7341681 | None:intergenic |
| ATTTCAGGTGTTACAATCAG+GGG | 0.591987 | 5_3:+7342427 | Msa0795390:intron |
| AATTCGATGATAAGAGCTCA+AGG | 0.592445 | 5_3:+7343171 | Msa0795390:CDS |
| GTGAAATTGAAATGTACAGG+AGG | 0.592477 | 5_3:+7344411 | Msa0795390:CDS |
| AGTTCAGATACAGCAGATGT+TGG | 0.594949 | 5_3:+7345069 | Msa0795390:CDS |
| ATCAAAAGCTAGCGCAGTCG+GGG | 0.595936 | 5_3:+7342730 | Msa0795390:CDS |
| TCGGAATGTTACTTTACATG+AGG | 0.598259 | 5_3:+7346008 | Msa0795390:CDS |
| TACAGCTGAAAGGCTTCAAG+AGG | 0.600122 | 5_3:+7344838 | Msa0795390:CDS |
| TTCAAGATGGAAATTGTCGG+TGG | 0.600830 | 5_3:+7342522 | Msa0795390:CDS |
| GGAACTCAAGGAGCAGTCAG+AGG | 0.602241 | 5_3:+7344625 | Msa0795390:CDS |
| AGCATTGGATGATCTTGTCA+AGG | 0.603938 | 5_3:+7344331 | Msa0795390:CDS |
| TGTTTCGTTCTTCAAAATGG+AGG | 0.604012 | 5_3:+7341894 | Msa0795390:CDS |
| GAACAAACTGGTTTGTGGTG+GGG | 0.604811 | 5_3:-7343614 | None:intergenic |
| TTTCTCAGTCCAATTTCGCA+GGG | 0.605119 | 5_3:-7343579 | None:intergenic |
| AAGTAAAATGAGATATCTCA+AGG | 0.605138 | 5_3:+7345393 | Msa0795390:CDS |
| CATTTCTTCGAGGTCCTGCA+CGG | 0.609463 | 5_3:-7344189 | None:intergenic |
| AGCAGCATTTGGAGATTCTG+CGG | 0.610316 | 5_3:-7343652 | None:intergenic |
| TCGGTGGTTGATCAACTCGT+TGG | 0.613976 | 5_3:-7341724 | None:intergenic |
| TGGAACAAACTGGTTTGTGG+TGG | 0.614538 | 5_3:-7343616 | None:intergenic |
| AAGAGGGCAGGATCTCATGA+AGG | 0.615741 | 5_3:+7343929 | Msa0795390:CDS |
| CAGGTCTTTCCACAAACGCA+TGG | 0.619359 | 5_3:+7344007 | Msa0795390:CDS |
| GCAGGGCCTGATAAAGTCAA+AGG | 0.619605 | 5_3:+7345888 | Msa0795390:intron |
| TCAGGTGTTACAATCAGGGG+TGG | 0.620277 | 5_3:+7342430 | Msa0795390:intron |
| TTGTAAAGGAAAGCAAAAGA+GGG | 0.620965 | 5_3:+7343913 | Msa0795390:CDS |
| GCAGGCTCCAATATATCAAG+AGG | 0.621129 | 5_3:-7346496 | None:intergenic |
| TTCTGATGTAAATCATGCAT+CGG | 0.622397 | 5_3:-7343690 | None:intergenic |
| AAAATGCTAATACAGCTGAA+AGG | 0.622552 | 5_3:+7344828 | Msa0795390:CDS |
| AACAGGTCACAGTTGGAAAG+CGG | 0.623497 | 5_3:+7344047 | Msa0795390:CDS |
| GCAAAGAGCCATCCAAGCCG+AGG | 0.624482 | 5_3:+7344781 | Msa0795390:CDS |
| TGAATTGTTGATAACTGGAA+CGG | 0.628105 | 5_3:+7341773 | Msa0795390:five_prime_UTR |
| AAGAGATTCAGGGATAGTAA+CGG | 0.632337 | 5_3:+7345595 | Msa0795390:CDS |
| ATGGGAAGAGAGACATGAGA+GGG | 0.634288 | 5_3:-7342794 | None:intergenic |
| TCAAGATGGAAATTGTCGGT+GGG | 0.636130 | 5_3:+7342523 | Msa0795390:CDS |
| ATCACCATGAGAATTCCTGA+TGG | 0.636391 | 5_3:-7342813 | None:intergenic |
| TCACCATGAGAATTCCTGAT+GGG | 0.636505 | 5_3:-7342812 | None:intergenic |
| AAAGAGATTAGAGAAAGCTA+CGG | 0.643270 | 5_3:+7342499 | Msa0795390:CDS |
| TATGGAGCTGGAGAACAAAG+TGG | 0.649823 | 5_3:+7345975 | Msa0795390:CDS |
| GTCAACTAAAGCCGATTACG+AGG | 0.650363 | 5_3:+7345006 | Msa0795390:CDS |
| TCAAGGAACCAATTCAGCAA+CGG | 0.650410 | 5_3:+7343188 | Msa0795390:CDS |
| ATTGTTACATCAAGGAACTG+TGG | 0.651765 | 5_3:+7345303 | Msa0795390:CDS |
| CGAAAATCAGAAGAAGCTTG+GGG | 0.658269 | 5_3:+7345120 | Msa0795390:CDS |
| AATGTACAGGAGGGACAAAG+AGG | 0.660590 | 5_3:+7344421 | Msa0795390:CDS |
| GTACTAGAAACCCATATCAG+AGG | 0.661720 | 5_3:+7344677 | Msa0795390:CDS |
| TAAACAACAGAACGTCTAGT+GGG | 0.662018 | 5_3:+7343508 | Msa0795390:CDS |
| TTCCAAGGAAAGTTCCCAAG+AGG | 0.662303 | 5_3:+7343791 | Msa0795390:CDS |
| TGAAATTGAAATGTACAGGA+GGG | 0.663489 | 5_3:+7344412 | Msa0795390:CDS |
| AATGAGTCTCAAATTTGCCG+AGG | 0.664150 | 5_3:+7346399 | Msa0795390:CDS |
| ATTTACATCAGAAATCACAA+TGG | 0.664555 | 5_3:+7343700 | Msa0795390:CDS |
| GATGGGAAGAGAGACATGAG+AGG | 0.665257 | 5_3:-7342795 | None:intergenic |
| CCATATCAGAGGATTAGAGG+AGG | 0.680781 | 5_3:+7344688 | Msa0795390:CDS |
| ATGTCATTCATAGCAGCAGG+AGG | 0.682334 | 5_3:-7344575 | None:intergenic |
| AGTTAATAGGGATTTCTCTG+AGG | 0.682694 | 5_3:+7345147 | Msa0795390:CDS |
| GGAGCTGGAGAACAAAGTGG+AGG | 0.699117 | 5_3:+7345978 | Msa0795390:CDS |
| GAGTCTCTCAATCTCCAATG+GGG | 0.705362 | 5_3:-7343817 | None:intergenic |
| AGAACTTGACAATGTAACGT+CGG | 0.708038 | 5_3:-7343532 | None:intergenic |
| AAGAAATGGATTGGAACACG+CGG | 0.739070 | 5_3:+7346276 | Msa0795390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTATTATTAATAA+AGG | - | chr5_3:7342208-7342227 | None:intergenic | 0.0% |
| !! | TAAAAAAAAATTACTAAACT+CGG | - | chr5_3:7341746-7341765 | None:intergenic | 10.0% |
| !! | TTATATTATAACTGAAATCT+AGG | - | chr5_3:7342232-7342251 | None:intergenic | 15.0% |
| !!! | TGATTTTTTGATTAATAAAC+AGG | + | chr5_3:7342957-7342976 | Msa0795390:intron | 15.0% |
| !! | AAAAAAATGATCAAATTCAA+AGG | + | chr5_3:7343001-7343020 | Msa0795390:CDS | 15.0% |
| !! | AAAAAAATTATAGACTTGTA+TGG | + | chr5_3:7344389-7344408 | Msa0795390:CDS | 15.0% |
| !! | CCTTTATATTAACATAAAAA+GGG | - | chr5_3:7345858-7345877 | None:intergenic | 15.0% |
| !! | TCCTTTATATTAACATAAAA+AGG | - | chr5_3:7345859-7345878 | None:intergenic | 15.0% |
| !! | TTAATATAAAGGATTGTTTA+TGG | + | chr5_3:7345866-7345885 | Msa0795390:intron | 15.0% |
| !! | GAATAAACTAATGTTTATAA+TGG | + | chr5_3:7346571-7346590 | Msa0795390:three_prime_UTR | 15.0% |
| !! | ATCTTATGTTTCAGATATTA+AGG | - | chr5_3:7341633-7341652 | None:intergenic | 20.0% |
| !! | GAATGAATAATCTAATGTAT+TGG | + | chr5_3:7342090-7342109 | Msa0795390:intron | 20.0% |
| !!! | CTATCATATTTCAATTTTCT+GGG | + | chr5_3:7342277-7342296 | Msa0795390:intron | 20.0% |
| !!! | TATCATATTTTGATTCTCAA+TGG | + | chr5_3:7342337-7342356 | Msa0795390:intron | 20.0% |
| !!! | ATATAATTTTTTGCTCTCAA+CGG | + | chr5_3:7342613-7342632 | Msa0795390:CDS | 20.0% |
| !!! | TGTCACTGTTATAAAATTTT+TGG | + | chr5_3:7342690-7342709 | Msa0795390:intron | 20.0% |
| !!! | GTCACTGTTATAAAATTTTT+GGG | + | chr5_3:7342691-7342710 | Msa0795390:intron | 20.0% |
| !!! | CATTATTATTTTTCCATTTC+TGG | + | chr5_3:7343042-7343061 | Msa0795390:intron | 20.0% |
| !! | TTTGTTTGTATATATTCAAC+TGG | + | chr5_3:7343335-7343354 | Msa0795390:intron | 20.0% |
| !!! | TTTTAATATCTCATAGTCTA+GGG | - | chr5_3:7344474-7344493 | None:intergenic | 20.0% |
| !!! | AAGCAATTTTTTTGTTGATT+GGG | - | chr5_3:7345654-7345673 | None:intergenic | 20.0% |
| !!! | CCCTTTTTATGTTAATATAA+AGG | + | chr5_3:7345855-7345874 | Msa0795390:intron | 20.0% |
| !! | TAACATTTCAAATATCAAGA+AGG | - | chr5_3:7346614-7346633 | None:intergenic | 20.0% |
| ! | AAAAAAATTACTAAACTCGG+TGG | - | chr5_3:7341743-7341762 | None:intergenic | 25.0% |
| !!! | TACATTGAATTGTTGATAAC+TGG | + | chr5_3:7341768-7341787 | Msa0795390:five_prime_UTR | 25.0% |
| ! | CCAGAAAATTGAAATATGAT+AGG | - | chr5_3:7342279-7342298 | None:intergenic | 25.0% |
| !! | CCTATCATATTTCAATTTTC+TGG | + | chr5_3:7342276-7342295 | Msa0795390:intron | 25.0% |
| !!! | AATTTTCTGGGAAATGAAAA+TGG | + | chr5_3:7342289-7342308 | Msa0795390:intron | 25.0% |
| !!! | AAATTTTTGGGTTTATATGC+AGG | + | chr5_3:7342703-7342722 | Msa0795390:intron | 25.0% |
| !!! | AATTTTTGGGTTTATATGCA+GGG | + | chr5_3:7342704-7342723 | Msa0795390:intron | 25.0% |
| !!! | AAATTCAAAGGTACTACAAA+GGG | + | chr5_3:7343013-7343032 | Msa0795390:intron | 25.0% |
| ! | AAAATTCTTGTGACTTCTTA+CGG | + | chr5_3:7343273-7343292 | Msa0795390:intron | 25.0% |
| !!! | CTTCACATGTTTTTTACTTT+CGG | - | chr5_3:7343431-7343450 | None:intergenic | 25.0% |
| ! | ATTTACATCAGAAATCACAA+TGG | + | chr5_3:7343700-7343719 | Msa0795390:CDS | 25.0% |
| ! | TTTACATCAGAAATCACAAT+GGG | + | chr5_3:7343701-7343720 | Msa0795390:CDS | 25.0% |
| ! | TCATTATCTTGAAAGATGAA+AGG | + | chr5_3:7343955-7343974 | Msa0795390:CDS | 25.0% |
| ! | CATTATCTTGAAAGATGAAA+GGG | + | chr5_3:7343956-7343975 | Msa0795390:CDS | 25.0% |
| !!! | GCATCTTTTTTAACTGTAAT+CGG | - | chr5_3:7344142-7344161 | None:intergenic | 25.0% |
| !!! | GTTTTAATATCTCATAGTCT+AGG | - | chr5_3:7344475-7344494 | None:intergenic | 25.0% |
| ! | AGACTATGAGATATTAAAAC+AGG | + | chr5_3:7344475-7344494 | Msa0795390:CDS | 25.0% |
| ! | TTGTATCTATTTGATTGCAA+AGG | - | chr5_3:7345045-7345064 | None:intergenic | 25.0% |
| ! | ACTTATGAAGAAATCAATTG+AGG | + | chr5_3:7345270-7345289 | Msa0795390:CDS | 25.0% |
| ! | AAGTAAAATGAGATATCTCA+AGG | + | chr5_3:7345393-7345412 | Msa0795390:CDS | 25.0% |
| !!! | TTTCAAAAAGTCACTTTTTG+AGG | + | chr5_3:7345483-7345502 | Msa0795390:CDS | 25.0% |
| ! | AAGAGTGAAATAAAGAAGAA+AGG | + | chr5_3:7345550-7345569 | Msa0795390:CDS | 25.0% |
| !!! | AATTTTTTTGTTGATTGGGA+TGG | - | chr5_3:7345650-7345669 | None:intergenic | 25.0% |
| !!! | GAAGCAATTTTTTTGTTGAT+TGG | - | chr5_3:7345655-7345674 | None:intergenic | 25.0% |
| ! | AGAGAAAATAAAAATGCTTG+AGG | + | chr5_3:7345711-7345730 | Msa0795390:CDS | 25.0% |
| ! | AACATAAAAAGGGAAAATGA+AGG | - | chr5_3:7345848-7345867 | None:intergenic | 25.0% |
| !!! | AAACATTTGTTGTTGAAATG+TGG | + | chr5_3:7346138-7346157 | Msa0795390:intron | 25.0% |
| ! | ATATCAGAAGAAGTAAGAAA+TGG | + | chr5_3:7346262-7346281 | Msa0795390:CDS | 25.0% |
| TGTCATTGAAATAACGTTGT+TGG | + | chr5_3:7341580-7341599 | Msa0795390:five_prime_UTR | 30.0% | |
| !! | TGAATTGTTGATAACTGGAA+CGG | + | chr5_3:7341773-7341792 | Msa0795390:five_prime_UTR | 30.0% |
| !!! | GTTGTTTTTGGTGTTTTAGT+TGG | + | chr5_3:7341795-7341814 | Msa0795390:five_prime_UTR | 30.0% |
| AGATGTTTCGTTCTTCAAAA+TGG | + | chr5_3:7341891-7341910 | Msa0795390:exon | 30.0% | |
| !! | TCTAATGTATTGGTTCTGTT+AGG | + | chr5_3:7342100-7342119 | Msa0795390:intron | 30.0% |
| GATTCTCAATGGTATTAGAT+TGG | + | chr5_3:7342348-7342367 | Msa0795390:intron | 30.0% | |
| ATGAGATGAGAAATTGTGTT+TGG | + | chr5_3:7342395-7342414 | Msa0795390:intron | 30.0% | |
| !! | GTTTGGTGATGTAATATTTC+AGG | + | chr5_3:7342412-7342431 | Msa0795390:intron | 30.0% |
| ! | ATATTTCAGGTGTTACAATC+AGG | + | chr5_3:7342425-7342444 | Msa0795390:intron | 30.0% |
| ! | TATTTCAGGTGTTACAATCA+GGG | + | chr5_3:7342426-7342445 | Msa0795390:intron | 30.0% |
| AAAGAGATTAGAGAAAGCTA+CGG | + | chr5_3:7342499-7342518 | Msa0795390:CDS | 30.0% | |
| !!! | ATTTTTGGGTTTATATGCAG+GGG | + | chr5_3:7342705-7342724 | Msa0795390:intron | 30.0% |
| AATTTCAAGCAACTTCACAT+CGG | - | chr5_3:7342872-7342891 | None:intergenic | 30.0% | |
| TGAAGTTGCTTGAAATTTCA+GGG | + | chr5_3:7342875-7342894 | Msa0795390:intron | 30.0% | |
| !! | CTTCACTCAAAATTTTGAGT+AGG | - | chr5_3:7342904-7342923 | None:intergenic | 30.0% |
| !!! | CATTTTTTTCTTGCATTCTC+TGG | - | chr5_3:7342990-7343009 | None:intergenic | 30.0% |
| !! | CAAATTCAAAGGTACTACAA+AGG | + | chr5_3:7343012-7343031 | Msa0795390:intron | 30.0% |
| CAATCTTGTATAACCAGAAA+TGG | - | chr5_3:7343058-7343077 | None:intergenic | 30.0% | |
| !! | CATTTCTGGTTATACAAGAT+TGG | + | chr5_3:7343056-7343075 | Msa0795390:intron | 30.0% |
| !!! | CTTGAGAGTTTTTTATGATG+TGG | + | chr5_3:7343089-7343108 | Msa0795390:intron | 30.0% |
| TTTCAATAACATTTGCAGAG+AGG | + | chr5_3:7343121-7343140 | Msa0795390:intron | 30.0% | |
| TTCTGATGTAAATCATGCAT+CGG | - | chr5_3:7343693-7343712 | None:intergenic | 30.0% | |
| ATTGTAAAGGAAAGCAAAAG+AGG | + | chr5_3:7343912-7343931 | Msa0795390:CDS | 30.0% | |
| TTGTAAAGGAAAGCAAAAGA+GGG | + | chr5_3:7343913-7343932 | Msa0795390:CDS | 30.0% | |
| ! | TGATGAAGATCAAAAAGCAT+TGG | + | chr5_3:7344316-7344335 | Msa0795390:CDS | 30.0% |
| ATGGTGAAATTGAAATGTAC+AGG | + | chr5_3:7344408-7344427 | Msa0795390:CDS | 30.0% | |
| TGAAATTGAAATGTACAGGA+GGG | + | chr5_3:7344412-7344431 | Msa0795390:CDS | 30.0% | |
| AAATTCTCTAGCTACCATTA+AGG | + | chr5_3:7344655-7344674 | Msa0795390:CDS | 30.0% | |
| GAAATGGAAAAACAAGTACA+TGG | + | chr5_3:7344710-7344729 | Msa0795390:CDS | 30.0% | |
| !! | TGTATTAGCATTTTTCAGTC+TGG | - | chr5_3:7344822-7344841 | None:intergenic | 30.0% |
| AAAATGCTAATACAGCTGAA+AGG | + | chr5_3:7344828-7344847 | Msa0795390:CDS | 30.0% | |
| TACCTTTGATGAAAATGAGA+AGG | + | chr5_3:7344892-7344911 | Msa0795390:CDS | 30.0% | |
| CTCTTAAATGAACAAGTAGA+AGG | + | chr5_3:7345220-7345239 | Msa0795390:CDS | 30.0% | |
| AGAAATCTTAAGAACTGACT+TGG | + | chr5_3:7345246-7345265 | Msa0795390:CDS | 30.0% | |
| ! | TCTGAAACATTGTTACATCA+AGG | + | chr5_3:7345295-7345314 | Msa0795390:CDS | 30.0% |
| ! | CTTTATTTCACTCTTTAGCT+GGG | - | chr5_3:7345545-7345564 | None:intergenic | 30.0% |
| ! | TCTTTATTTCACTCTTTAGC+TGG | - | chr5_3:7345546-7345565 | None:intergenic | 30.0% |
| ! | TTTTAGATCCATCAGAAAGT+TGG | - | chr5_3:7345627-7345646 | None:intergenic | 30.0% |
| CATCAATGATATGAAGACAT+AGG | + | chr5_3:7345746-7345765 | Msa0795390:intron | 30.0% | |
| TATAAAGGATTGTTTATGGC+AGG | + | chr5_3:7345870-7345889 | Msa0795390:intron | 30.0% | |
| ATAAAGGATTGTTTATGGCA+GGG | + | chr5_3:7345871-7345890 | Msa0795390:intron | 30.0% | |
| AACAACTTCATCTATGAAGA+AGG | + | chr5_3:7345930-7345949 | Msa0795390:CDS | 30.0% | |
| TTCATCTATGAAGAAGGAAA+AGG | + | chr5_3:7345936-7345955 | Msa0795390:CDS | 30.0% | |
| ACAAAGTGGAGGAATTTAAT+CGG | + | chr5_3:7345989-7346008 | Msa0795390:CDS | 30.0% | |
| CAAGACTAAGTTTGTAATTC+AGG | - | chr5_3:7346097-7346116 | None:intergenic | 30.0% | |
| !! | ATTACAAACTTAGTCTTGCT+TGG | + | chr5_3:7346099-7346118 | Msa0795390:intron | 30.0% |
| AGAAGAAGTAAGAAATGGAT+TGG | + | chr5_3:7346267-7346286 | Msa0795390:CDS | 30.0% | |
| GAAGGAAAGAAACAAATCAA+TGG | + | chr5_3:7346339-7346358 | Msa0795390:CDS | 30.0% | |
| ! | GTTTTCTCCTCTTGATATAT+TGG | + | chr5_3:7346489-7346508 | Msa0795390:three_prime_UTR | 30.0% |
| !! | ATAACTGGAACGGTTGTTTT+TGG | + | chr5_3:7341783-7341802 | Msa0795390:five_prime_UTR | 35.0% |
| !!! | GTTTTTGGTGTTTTAGTTGG+TGG | + | chr5_3:7341798-7341817 | Msa0795390:five_prime_UTR | 35.0% |
| TGTTTCGTTCTTCAAAATGG+AGG | + | chr5_3:7341894-7341913 | Msa0795390:CDS | 35.0% | |
| GCTTCAATTCAATGCTACTA+AGG | + | chr5_3:7341949-7341968 | Msa0795390:CDS | 35.0% | |
| CAATTCAATGCTACTAAGGT+AGG | + | chr5_3:7341953-7341972 | Msa0795390:intron | 35.0% | |
| ! | ATTTCAGGTGTTACAATCAG+GGG | + | chr5_3:7342427-7342446 | Msa0795390:intron | 35.0% |
| GCTTTCTCTAATCTCTTTGT+TGG | - | chr5_3:7342497-7342516 | None:intergenic | 35.0% | |
| TACTTGACTGTTTCGTATAC+CGG | - | chr5_3:7342554-7342573 | None:intergenic | 35.0% | |
| CGAAACAGTCAAGTATTATC+AGG | + | chr5_3:7342559-7342578 | Msa0795390:CDS | 35.0% | |
| !!! | TCGTTGATTTTTCCAGTCTT+CGG | - | chr5_3:7342587-7342606 | None:intergenic | 35.0% |
| GTGAAGTTGCTTGAAATTTC+AGG | + | chr5_3:7342874-7342893 | Msa0795390:intron | 35.0% | |
| !! | AAAGGTACTACAAAGGGAAT+TGG | + | chr5_3:7343019-7343038 | Msa0795390:intron | 35.0% |
| AATTCGATGATAAGAGCTCA+AGG | + | chr5_3:7343171-7343190 | Msa0795390:CDS | 35.0% | |
| AGTAAGCATTTCACTCATTC+AGG | + | chr5_3:7343247-7343266 | Msa0795390:intron | 35.0% | |
| ! | CGTTCTGTTGTTTATTGCTT+TGG | - | chr5_3:7343502-7343521 | None:intergenic | 35.0% |
| ATAAACAACAGAACGTCTAG+TGG | + | chr5_3:7343507-7343526 | Msa0795390:CDS | 35.0% | |
| TAAACAACAGAACGTCTAGT+GGG | + | chr5_3:7343508-7343527 | Msa0795390:CDS | 35.0% | |
| AGAACTTGACAATGTAACGT+CGG | - | chr5_3:7343535-7343554 | None:intergenic | 35.0% | |
| ! | AAACCAGTTTGTTCCAGTTA+TGG | + | chr5_3:7343623-7343642 | Msa0795390:CDS | 35.0% |
| AGTATGGGTGATTCAACAAA+CGG | + | chr5_3:7343753-7343772 | Msa0795390:CDS | 35.0% | |
| ! | CTTTACAATTTGCTTCCTGA+GGG | - | chr5_3:7343901-7343920 | None:intergenic | 35.0% |
| AGACAGAATGTGACAATATC+AGG | + | chr5_3:7343988-7344007 | Msa0795390:CDS | 35.0% | |
| TTGTCTGATTTCTTCGACAA+AGG | - | chr5_3:7344084-7344103 | None:intergenic | 35.0% | |
| GCAAGAATCAAATGCTGAAT+TGG | + | chr5_3:7344160-7344179 | Msa0795390:CDS | 35.0% | |
| GAGTTTCATCTCTAACTCTT+GGG | - | chr5_3:7344276-7344295 | None:intergenic | 35.0% | |
| AGAGTTTCATCTCTAACTCT+TGG | - | chr5_3:7344277-7344296 | None:intergenic | 35.0% | |
| GTGAAATTGAAATGTACAGG+AGG | + | chr5_3:7344411-7344430 | Msa0795390:CDS | 35.0% | |
| TGAAACTCACATTGAGAATC+TGG | + | chr5_3:7344598-7344617 | Msa0795390:CDS | 35.0% | |
| TCACATTGAGAATCTGGAAA+AGG | + | chr5_3:7344604-7344623 | Msa0795390:CDS | 35.0% | |
| !! | ATGGGTTTCTAGTACCTTAA+TGG | - | chr5_3:7344672-7344691 | None:intergenic | 35.0% |
| TGAAGCTGATATAGAAGCAA+TGG | + | chr5_3:7344736-7344755 | Msa0795390:CDS | 35.0% | |
| ! | AGCCTTCTCATTTTCATCAA+AGG | - | chr5_3:7344897-7344916 | None:intergenic | 35.0% |
| CTACAGAAAAATCTAGTGGA+AGG | + | chr5_3:7344953-7344972 | Msa0795390:CDS | 35.0% | |
| ! | GTTCAGTTTTACCTCGTAAT+CGG | - | chr5_3:7345020-7345039 | None:intergenic | 35.0% |
| TCGAAAATCAGAAGAAGCTT+GGG | + | chr5_3:7345119-7345138 | Msa0795390:CDS | 35.0% | |
| AGTTAATAGGGATTTCTCTG+AGG | + | chr5_3:7345147-7345166 | Msa0795390:CDS | 35.0% | |
| ATTGTTACATCAAGGAACTG+TGG | + | chr5_3:7345303-7345322 | Msa0795390:CDS | 35.0% | |
| CAAGGAAGAAAAAGAAGAAG+AGG | + | chr5_3:7345411-7345430 | Msa0795390:CDS | 35.0% | |
| TAGACTATTGAAGTCAGAGT+TGG | + | chr5_3:7345435-7345454 | Msa0795390:CDS | 35.0% | |
| !!! | AAAGTCACTTTTTGAGGATG+AGG | + | chr5_3:7345489-7345508 | Msa0795390:CDS | 35.0% |
| AAGAGATTCAGGGATAGTAA+CGG | + | chr5_3:7345595-7345614 | Msa0795390:CDS | 35.0% | |
| TCCTCAGCATTCAAAAGAAA+TGG | + | chr5_3:7345678-7345697 | Msa0795390:CDS | 35.0% | |
| TACAAGAGAAAACAGCATTC+AGG | - | chr5_3:7345800-7345819 | None:intergenic | 35.0% | |
| ! | CAGTTTCCTTTGACTTTATC+AGG | - | chr5_3:7345897-7345916 | None:intergenic | 35.0% |
| AAAGTCAAAGGAAACTGCAT+TGG | + | chr5_3:7345900-7345919 | Msa0795390:CDS | 35.0% | |
| !! | TCGGAATGTTACTTTACATG+AGG | + | chr5_3:7346008-7346027 | Msa0795390:CDS | 35.0% |
| ! | AGTTTGTAATTCAGGTTTCG+TGG | - | chr5_3:7346089-7346108 | None:intergenic | 35.0% |
| CATTAACATGCCCTTCAAAT+TGG | + | chr5_3:7346204-7346223 | Msa0795390:intron | 35.0% | |
| TCCTGAACAACCAATTTGAA+GGG | - | chr5_3:7346217-7346236 | None:intergenic | 35.0% | |
| ATCCTGAACAACCAATTTGA+AGG | - | chr5_3:7346218-7346237 | None:intergenic | 35.0% | |
| TTCCTTCAATGACGACAATT+CGG | - | chr5_3:7346326-7346345 | None:intergenic | 35.0% | |
| ACGCAAAAGTGATTGTTTAG+AGG | + | chr5_3:7346659-7346678 | Msa0795390:three_prime_UTR | 35.0% | |
| GTGTAAGAACAGAAGGAGTT+AGG | - | chr5_3:7341677-7341696 | None:intergenic | 40.0% | |
| ACGTAACGTGTAAGAACAGA+AGG | - | chr5_3:7341684-7341703 | None:intergenic | 40.0% | |
| !! | TAGTTGGTGGAGTAGTTGTT+TGG | + | chr5_3:7341811-7341830 | Msa0795390:five_prime_UTR | 40.0% |
| !! | AGTTGGTGGAGTAGTTGTTT+GGG | + | chr5_3:7341812-7341831 | Msa0795390:five_prime_UTR | 40.0% |
| AATGGAGGAGTGAGAAGAAT+AGG | + | chr5_3:7341909-7341928 | Msa0795390:CDS | 40.0% | |
| !! | ATTGGTTCTGTTAGGTTCTG+AGG | + | chr5_3:7342108-7342127 | Msa0795390:intron | 40.0% |
| !! | TTGGTTCTGTTAGGTTCTGA+GGG | + | chr5_3:7342109-7342128 | Msa0795390:intron | 40.0% |
| !! | TTGGTGTTGTCAATAGTTCC+TGG | + | chr5_3:7342458-7342477 | Msa0795390:CDS | 40.0% |
| TCAATAGTTCCTGGTGACAT+TGG | + | chr5_3:7342467-7342486 | Msa0795390:CDS | 40.0% | |
| CGGTTCAAGATGGAAATTGT+CGG | + | chr5_3:7342519-7342538 | Msa0795390:CDS | 40.0% | |
| TTCAAGATGGAAATTGTCGG+TGG | + | chr5_3:7342522-7342541 | Msa0795390:CDS | 40.0% | |
| TCAAGATGGAAATTGTCGGT+GGG | + | chr5_3:7342523-7342542 | Msa0795390:CDS | 40.0% | |
| TATTATCAGGATCCGAAGAC+TGG | + | chr5_3:7342572-7342591 | Msa0795390:CDS | 40.0% | |
| TTATCAAAAGCTAGCGCAGT+CGG | + | chr5_3:7342728-7342747 | Msa0795390:CDS | 40.0% | |
| TCACCATGAGAATTCCTGAT+GGG | - | chr5_3:7342815-7342834 | None:intergenic | 40.0% | |
| ATCACCATGAGAATTCCTGA+TGG | - | chr5_3:7342816-7342835 | None:intergenic | 40.0% | |
| TCAAGGAACCAATTCAGCAA+CGG | + | chr5_3:7343188-7343207 | Msa0795390:CDS | 40.0% | |
| GATAGATTGCGTACTGAGTA+AGG | - | chr5_3:7343366-7343385 | None:intergenic | 40.0% | |
| ! | TTCCTGTTTCTCTGCTTAAC+AGG | + | chr5_3:7343467-7343486 | Msa0795390:intron | 40.0% |
| ATCCTGTTAAGCAGAGAAAC+AGG | - | chr5_3:7343472-7343491 | None:intergenic | 40.0% | |
| TTTCTCAGTCCAATTTCGCA+GGG | - | chr5_3:7343582-7343601 | None:intergenic | 40.0% | |
| ! | TTTTCTCAGTCCAATTTCGC+AGG | - | chr5_3:7343583-7343602 | None:intergenic | 40.0% |
| !! | AACTGGAACAAACTGGTTTG+TGG | - | chr5_3:7343622-7343641 | None:intergenic | 40.0% |
| TTCTCAAAATGCCCTTTCCA+AGG | + | chr5_3:7343776-7343795 | Msa0795390:CDS | 40.0% | |
| TTGGGAACTTTCCTTGGAAA+GGG | - | chr5_3:7343790-7343809 | None:intergenic | 40.0% | |
| TGAGTCTCTCAATCTCCAAT+GGG | - | chr5_3:7343821-7343840 | None:intergenic | 40.0% | |
| TTGAGTCTCTCAATCTCCAA+TGG | - | chr5_3:7343822-7343841 | None:intergenic | 40.0% | |
| ! | CCTTTACAATTTGCTTCCTG+AGG | - | chr5_3:7343902-7343921 | None:intergenic | 40.0% |
| CCTCAGGAAGCAAATTGTAA+AGG | + | chr5_3:7343899-7343918 | Msa0795390:CDS | 40.0% | |
| ! | AGCATTGGATGATCTTGTCA+AGG | + | chr5_3:7344331-7344350 | Msa0795390:CDS | 40.0% |
| CTAGCTTATGTACAAGCTTG+TGG | - | chr5_3:7344505-7344524 | None:intergenic | 40.0% | |
| TGTTTAACTGTTCCTGCAGT+TGG | - | chr5_3:7344535-7344554 | None:intergenic | 40.0% | |
| GAGGAGATGAACACTCATAT+TGG | - | chr5_3:7344559-7344578 | None:intergenic | 40.0% | |
| TCAATGTCATTCATAGCAGC+AGG | - | chr5_3:7344581-7344600 | None:intergenic | 40.0% | |
| GAATCTGGAAAAGGAACTCA+AGG | + | chr5_3:7344613-7344632 | Msa0795390:CDS | 40.0% | |
| GTACTAGAAACCCATATCAG+AGG | + | chr5_3:7344677-7344696 | Msa0795390:CDS | 40.0% | |
| AACCCATATCAGAGGATTAG+AGG | + | chr5_3:7344685-7344704 | Msa0795390:CDS | 40.0% | |
| CTCCTCTAATCCTCTGATAT+GGG | - | chr5_3:7344690-7344709 | None:intergenic | 40.0% | |
| TCATTTGCATTGAGAGTCTC+TGG | - | chr5_3:7344868-7344887 | None:intergenic | 40.0% | |
| GCGTCTACAGAAAAATCTAG+TGG | + | chr5_3:7344949-7344968 | Msa0795390:CDS | 40.0% | |
| TAGTTGACTGAAGCTCTTCT+TGG | - | chr5_3:7344994-7345013 | None:intergenic | 40.0% | |
| AGTTCAGATACAGCAGATGT+TGG | + | chr5_3:7345069-7345088 | Msa0795390:CDS | 40.0% | |
| !!! | CTTCTGATTTTCGAGTTGCA+TGG | - | chr5_3:7345113-7345132 | None:intergenic | 40.0% |
| CTCGAAAATCAGAAGAAGCT+TGG | + | chr5_3:7345118-7345137 | Msa0795390:CDS | 40.0% | |
| CGAAAATCAGAAGAAGCTTG+GGG | + | chr5_3:7345120-7345139 | Msa0795390:CDS | 40.0% | |
| AGCTTGGGGAACAAGTTAAT+AGG | + | chr5_3:7345134-7345153 | Msa0795390:CDS | 40.0% | |
| GCTTGGGGAACAAGTTAATA+GGG | + | chr5_3:7345135-7345154 | Msa0795390:CDS | 40.0% | |
| CACAATTGCGTCATTGAAGA+AGG | + | chr5_3:7345345-7345364 | Msa0795390:CDS | 40.0% | |
| ! | CAGCATTGAGAAGAGATTCA+GGG | + | chr5_3:7345585-7345604 | Msa0795390:CDS | 40.0% |
| ! | TTCTTTTGAATGCTGAGGAC+TGG | - | chr5_3:7345677-7345696 | None:intergenic | 40.0% |
| ! | GCCATTTCTTTTGAATGCTG+AGG | - | chr5_3:7345682-7345701 | None:intergenic | 40.0% |
| !! | AAGAAATGGATTGGAACACG+CGG | + | chr5_3:7346276-7346295 | Msa0795390:CDS | 40.0% |
| AATGAGTCTCAAATTTGCCG+AGG | + | chr5_3:7346399-7346418 | Msa0795390:CDS | 40.0% | |
| TTGTCTTTCACCTTCTACCT+CGG | - | chr5_3:7346419-7346438 | None:intergenic | 40.0% | |
| GACACTCTTGAGGTTTCTTA+CGG | - | chr5_3:7346455-7346474 | None:intergenic | 40.0% | |
| !! | AAACCTCAAGAGTGTCCATA+AGG | + | chr5_3:7346459-7346478 | Msa0795390:CDS | 40.0% |
| !! | AACCTCAAGAGTGTCCATAA+GGG | + | chr5_3:7346460-7346479 | Msa0795390:CDS | 40.0% |
| GAGAAAGCTACGGTTCAAGA+TGG | + | chr5_3:7342509-7342528 | Msa0795390:CDS | 45.0% | |
| AAATTGTCGGTGGGAGAATC+CGG | + | chr5_3:7342532-7342551 | Msa0795390:CDS | 45.0% | |
| TATCAAAAGCTAGCGCAGTC+GGG | + | chr5_3:7342729-7342748 | Msa0795390:CDS | 45.0% | |
| ATGGGAAGAGAGACATGAGA+GGG | - | chr5_3:7342797-7342816 | None:intergenic | 45.0% | |
| CTTCCCATCAGGAATTCTCA+TGG | + | chr5_3:7342809-7342828 | Msa0795390:CDS | 45.0% | |
| ! | TCAAGTTCTGATGACAGCTC+TGG | + | chr5_3:7343546-7343565 | Msa0795390:CDS | 45.0% |
| GTTGATACTCCCTGCGAAAT+TGG | + | chr5_3:7343570-7343589 | Msa0795390:CDS | 45.0% | |
| !! | GAACAAACTGGTTTGTGGTG+GGG | - | chr5_3:7343617-7343636 | None:intergenic | 45.0% |
| !! | GGAACAAACTGGTTTGTGGT+GGG | - | chr5_3:7343618-7343637 | None:intergenic | 45.0% |
| !! | TGGAACAAACTGGTTTGTGG+TGG | - | chr5_3:7343619-7343638 | None:intergenic | 45.0% |
| GAGCCATAACTGGAACAAAC+TGG | - | chr5_3:7343629-7343648 | None:intergenic | 45.0% | |
| AGCAGCATTTGGAGATTCTG+CGG | - | chr5_3:7343655-7343674 | None:intergenic | 45.0% | |
| ! | GAGGCATTAACAGCAGCATT+TGG | - | chr5_3:7343666-7343685 | None:intergenic | 45.0% |
| !! | TAAATCATGCATCGGTGTCG+AGG | - | chr5_3:7343685-7343704 | None:intergenic | 45.0% |
| TCAGAGCTCGGGTTAAGTAT+GGG | + | chr5_3:7343738-7343757 | Msa0795390:CDS | 45.0% | |
| CTTGGGAACTTTCCTTGGAA+AGG | - | chr5_3:7343791-7343810 | None:intergenic | 45.0% | |
| TTCCAAGGAAAGTTCCCAAG+AGG | + | chr5_3:7343791-7343810 | Msa0795390:CDS | 45.0% | |
| GAGTCTCTCAATCTCCAATG+GGG | - | chr5_3:7343820-7343839 | None:intergenic | 45.0% | |
| !! | CAAAGCTGAACTTGCTGCTT+TGG | + | chr5_3:7343839-7343858 | Msa0795390:CDS | 45.0% |
| AAAGGAAAGCAAAAGAGGGC+AGG | + | chr5_3:7343917-7343936 | Msa0795390:CDS | 45.0% | |
| ACGATGCCAAAGTGAGAAAC+AGG | + | chr5_3:7344030-7344049 | Msa0795390:CDS | 45.0% | |
| ! | CTGTGACCTGTTTCTCACTT+TGG | - | chr5_3:7344039-7344058 | None:intergenic | 45.0% |
| AGTGAGAAACAGGTCACAGT+TGG | + | chr5_3:7344040-7344059 | Msa0795390:CDS | 45.0% | |
| AACAGGTCACAGTTGGAAAG+CGG | + | chr5_3:7344047-7344066 | Msa0795390:CDS | 45.0% | |
| TCTGCTCCAACATTTCTTCG+AGG | - | chr5_3:7344202-7344221 | None:intergenic | 45.0% | |
| TGTATCGCGTTCGTGTCTAT+TGG | - | chr5_3:7344249-7344268 | None:intergenic | 45.0% | |
| CTCAAGCAAGTGTGTCTCTT+TGG | - | chr5_3:7344369-7344388 | None:intergenic | 45.0% | |
| AATGTACAGGAGGGACAAAG+AGG | + | chr5_3:7344421-7344440 | Msa0795390:CDS | 45.0% | |
| ATGTCATTCATAGCAGCAGG+AGG | - | chr5_3:7344578-7344597 | None:intergenic | 45.0% | |
| CCTCCTCTAATCCTCTGATA+TGG | - | chr5_3:7344691-7344710 | None:intergenic | 45.0% | |
| CCATATCAGAGGATTAGAGG+AGG | + | chr5_3:7344688-7344707 | Msa0795390:CDS | 45.0% | |
| CAGAGGATTAGAGGAGGAAA+TGG | + | chr5_3:7344694-7344713 | Msa0795390:CDS | 45.0% | |
| TACAGCTGAAAGGCTTCAAG+AGG | + | chr5_3:7344838-7344857 | Msa0795390:CDS | 45.0% | |
| TAGACGCAGTTCACTTGCTT+CGG | - | chr5_3:7344936-7344955 | None:intergenic | 45.0% | |
| GTCAACTAAAGCCGATTACG+AGG | + | chr5_3:7345006-7345025 | Msa0795390:CDS | 45.0% | |
| TCAGATACAGCAGATGTTGG+TGG | + | chr5_3:7345072-7345091 | Msa0795390:CDS | 45.0% | |
| TGCGTCATTGAAGAAGGAAG+CGG | + | chr5_3:7345351-7345370 | Msa0795390:CDS | 45.0% | |
| CCTGAATCTCTTCTCAATGC+TGG | - | chr5_3:7345587-7345606 | None:intergenic | 45.0% | |
| ! | CCAGCATTGAGAAGAGATTC+AGG | + | chr5_3:7345584-7345603 | Msa0795390:CDS | 45.0% |
| GGAACTCCAGAGCAGAATTA+TGG | + | chr5_3:7345957-7345976 | Msa0795390:CDS | 45.0% | |
| TATGGAGCTGGAGAACAAAG+TGG | + | chr5_3:7345975-7345994 | Msa0795390:CDS | 45.0% | |
| GCCCTTCAAATTGGTTGTTC+AGG | + | chr5_3:7346213-7346232 | Msa0795390:intron | 45.0% | |
| GACCGAATTGTCGTCATTGA+AGG | + | chr5_3:7346321-7346340 | Msa0795390:CDS | 45.0% | |
| CTCAAATTTGCCGAGGTAGA+AGG | + | chr5_3:7346406-7346425 | Msa0795390:CDS | 45.0% | |
| GAGAAAACTCTCAGCCCTTA+TGG | - | chr5_3:7346477-7346496 | None:intergenic | 45.0% | |
| GCAGGCTCCAATATATCAAG+AGG | - | chr5_3:7346499-7346518 | None:intergenic | 45.0% | |
| TCGGTGGTTGATCAACTCGT+TGG | - | chr5_3:7341727-7341746 | None:intergenic | 50.0% | |
| ! | TCAGGTGTTACAATCAGGGG+TGG | + | chr5_3:7342430-7342449 | Msa0795390:intron | 50.0% |
| ACAATCAGGGGTGGATGCAT+TGG | + | chr5_3:7342439-7342458 | Msa0795390:CDS | 50.0% | |
| !! | GTTGGTCTTCCAATGTCACC+AGG | - | chr5_3:7342479-7342498 | None:intergenic | 50.0% |
| ATCAAAAGCTAGCGCAGTCG+GGG | + | chr5_3:7342730-7342749 | Msa0795390:CDS | 50.0% | |
| AGAGACATGAGAGGGCTTTG+TGG | - | chr5_3:7342789-7342808 | None:intergenic | 50.0% | |
| GATGGGAAGAGAGACATGAG+AGG | - | chr5_3:7342798-7342817 | None:intergenic | 50.0% | |
| CTCATGTCTCTCTTCCCATC+AGG | + | chr5_3:7342798-7342817 | Msa0795390:CDS | 50.0% | |
| CTGTATCGCCGTTGCTGAAT+TGG | - | chr5_3:7343199-7343218 | None:intergenic | 50.0% | |
| ! | TCGTCATCTAGCTCAGAGCT+CGG | + | chr5_3:7343726-7343745 | Msa0795390:CDS | 50.0% |
| CTCAGAGCTCGGGTTAAGTA+TGG | + | chr5_3:7343737-7343756 | Msa0795390:CDS | 50.0% | |
| TGCCTCTTGGGAACTTTCCT+TGG | - | chr5_3:7343796-7343815 | None:intergenic | 50.0% | |
| ACATGGAACTACAGACCCTC+AGG | + | chr5_3:7343883-7343902 | Msa0795390:CDS | 50.0% | |
| AAGAGGGCAGGATCTCATGA+AGG | + | chr5_3:7343929-7343948 | Msa0795390:CDS | 50.0% | |
| CAGGTCTTTCCACAAACGCA+TGG | + | chr5_3:7344007-7344026 | Msa0795390:CDS | 50.0% | |
| ! | TGAATTGGTTCTTGCCGTGC+AGG | + | chr5_3:7344175-7344194 | Msa0795390:CDS | 50.0% |
| CATTTCTTCGAGGTCCTGCA+CGG | - | chr5_3:7344192-7344211 | None:intergenic | 50.0% | |
| GCAGGACCTCGAAGAAATGT+TGG | + | chr5_3:7344193-7344212 | Msa0795390:CDS | 50.0% | |
| GGTCTTTCGCAATGCTTCCT+CGG | - | chr5_3:7344801-7344820 | None:intergenic | 50.0% | |
| TGCTTCGGTCAATGCTCTCA+TGG | - | chr5_3:7344921-7344940 | None:intergenic | 50.0% | |
| GGACGCAACCAACTTTCTGA+TGG | + | chr5_3:7345616-7345635 | Msa0795390:CDS | 50.0% | |
| GCAGGGCCTGATAAAGTCAA+AGG | + | chr5_3:7345888-7345907 | Msa0795390:intron | 50.0% | |
| CCAGCTCCATAATTCTGCTC+TGG | - | chr5_3:7345966-7345985 | None:intergenic | 50.0% | |
| CCAGAGCAGAATTATGGAGC+TGG | + | chr5_3:7345963-7345982 | Msa0795390:CDS | 50.0% | |
| ! | CACGCGGACAATAGTCTTAG+TGG | + | chr5_3:7346292-7346311 | Msa0795390:CDS | 50.0% |
| AGCCCTTATGGACACTCTTG+AGG | - | chr5_3:7346465-7346484 | None:intergenic | 50.0% | |
| CTGCTACAGCTATACACTGC+AGG | - | chr5_3:7346517-7346536 | None:intergenic | 50.0% | |
| CTGCAGTGTATAGCTGTAGC+AGG | + | chr5_3:7346515-7346534 | Msa0795390:three_prime_UTR | 50.0% | |
| ! | CGTCATCTAGCTCAGAGCTC+GGG | + | chr5_3:7343727-7343746 | Msa0795390:CDS | 55.0% |
| !! | TTCCCAAGAGGCATCCCCAT+TGG | + | chr5_3:7343803-7343822 | Msa0795390:CDS | 55.0% |
| CTCCAATGGGGATGCCTCTT+GGG | - | chr5_3:7343808-7343827 | None:intergenic | 55.0% | |
| TCTCCAATGGGGATGCCTCT+TGG | - | chr5_3:7343809-7343828 | None:intergenic | 55.0% | |
| !! | CTGAACTTGCTGCTTTGGCG+AGG | + | chr5_3:7343844-7343863 | Msa0795390:CDS | 55.0% |
| GCACATGGATGTGTCGGACA+TGG | + | chr5_3:7343866-7343885 | Msa0795390:CDS | 55.0% | |
| TGGCATCGTCCATGCGTTTG+TGG | - | chr5_3:7344019-7344038 | None:intergenic | 55.0% | |
| GCTAGAGCAAAGCCAACTGC+AGG | + | chr5_3:7344520-7344539 | Msa0795390:CDS | 55.0% | |
| GGAACTCAAGGAGCAGTCAG+AGG | + | chr5_3:7344625-7344644 | Msa0795390:CDS | 55.0% | |
| !! | CAATGCTTCCTCGGCTTGGA+TGG | - | chr5_3:7344792-7344811 | None:intergenic | 55.0% |
| TTCGCAATGCTTCCTCGGCT+TGG | - | chr5_3:7344796-7344815 | None:intergenic | 55.0% | |
| GGAGCTGGAGAACAAAGTGG+AGG | + | chr5_3:7345978-7345997 | Msa0795390:CDS | 55.0% | |
| GCAGGTGTACTTTGCAGCAG+TGG | + | chr5_3:7346533-7346552 | Msa0795390:three_prime_UTR | 55.0% | |
| TCTGCGGCACGAGCCATAAC+TGG | - | chr5_3:7343639-7343658 | None:intergenic | 60.0% | |
| !! | TGCTGCTTTGGCGAGGCACA+TGG | + | chr5_3:7343851-7343870 | Msa0795390:CDS | 60.0% |
| GGCGAGGCACATGGATGTGT+CGG | + | chr5_3:7343860-7343879 | Msa0795390:CDS | 60.0% | |
| GCAAAGAGCCATCCAAGCCG+AGG | + | chr5_3:7344781-7344800 | Msa0795390:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 7341572 | 7346775 | 7341572 | ID=Msa0795390;Name=Msa0795390 |
| chr5_3 | mRNA | 7341572 | 7346775 | 7341572 | ID=Msa0795390-mRNA-1;Parent=Msa0795390;Name=Msa0795390-mRNA-1;_AED=0.05;_eAED=0.05;_QI=321|1|1|1|1|1|8|289|1062 |
| chr5_3 | exon | 7341572 | 7341970 | 7341572 | ID=Msa0795390-mRNA-1:exon:2989;Parent=Msa0795390-mRNA-1 |
| chr5_3 | exon | 7342434 | 7342634 | 7342434 | ID=Msa0795390-mRNA-1:exon:2990;Parent=Msa0795390-mRNA-1 |
| chr5_3 | exon | 7342725 | 7342847 | 7342725 | ID=Msa0795390-mRNA-1:exon:2991;Parent=Msa0795390-mRNA-1 |
| chr5_3 | exon | 7342979 | 7343022 | 7342979 | ID=Msa0795390-mRNA-1:exon:2992;Parent=Msa0795390-mRNA-1 |
| chr5_3 | exon | 7343139 | 7343247 | 7343139 | ID=Msa0795390-mRNA-1:exon:2993;Parent=Msa0795390-mRNA-1 |
| chr5_3 | exon | 7343489 | 7345732 | 7343489 | ID=Msa0795390-mRNA-1:exon:2994;Parent=Msa0795390-mRNA-1 |
| chr5_3 | exon | 7345892 | 7346029 | 7345892 | ID=Msa0795390-mRNA-1:exon:2995;Parent=Msa0795390-mRNA-1 |
| chr5_3 | exon | 7346235 | 7346775 | 7346235 | ID=Msa0795390-mRNA-1:exon:2996;Parent=Msa0795390-mRNA-1 |
| chr5_3 | five_prime_UTR | 7341572 | 7341892 | 7341572 | ID=Msa0795390-mRNA-1:five_prime_utr;Parent=Msa0795390-mRNA-1 |
| chr5_3 | CDS | 7341893 | 7341970 | 7341893 | ID=Msa0795390-mRNA-1:cds;Parent=Msa0795390-mRNA-1 |
| chr5_3 | CDS | 7342434 | 7342634 | 7342434 | ID=Msa0795390-mRNA-1:cds;Parent=Msa0795390-mRNA-1 |
| chr5_3 | CDS | 7342725 | 7342847 | 7342725 | ID=Msa0795390-mRNA-1:cds;Parent=Msa0795390-mRNA-1 |
| chr5_3 | CDS | 7342979 | 7343022 | 7342979 | ID=Msa0795390-mRNA-1:cds;Parent=Msa0795390-mRNA-1 |
| chr5_3 | CDS | 7343139 | 7343247 | 7343139 | ID=Msa0795390-mRNA-1:cds;Parent=Msa0795390-mRNA-1 |
| chr5_3 | CDS | 7343489 | 7345732 | 7343489 | ID=Msa0795390-mRNA-1:cds;Parent=Msa0795390-mRNA-1 |
| chr5_3 | CDS | 7345892 | 7346029 | 7345892 | ID=Msa0795390-mRNA-1:cds;Parent=Msa0795390-mRNA-1 |
| chr5_3 | CDS | 7346235 | 7346486 | 7346235 | ID=Msa0795390-mRNA-1:cds;Parent=Msa0795390-mRNA-1 |
| chr5_3 | three_prime_UTR | 7346487 | 7346775 | 7346487 | ID=Msa0795390-mRNA-1:three_prime_utr;Parent=Msa0795390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
