Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0826610 | XP_003617941.2 | 100.000 | 130 | 0 | 0 | 33 | 162 | 1 | 130 | 2.03e-89 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0826610 | sp|P49206|RS261_ARATH | 83.621 | 116 | 19 | 0 | 33 | 148 | 1 | 116 | 1.19e-67 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0826610 | Q9SWS9 | 100.000 | 130 | 0 | 0 | 33 | 162 | 1 | 130 | 9.69e-90 | 266 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0079560 | Msa0826610 | 0.813992 | 1.932753e-51 | -8.615850e-47 |
| Msa0656450 | Msa0826610 | 0.808052 | 3.742110e-50 | -8.615850e-47 |
| Msa0826610 | Msa0864660 | 0.998848 | 6.182160e-279 | -8.615850e-47 |
| Msa0826610 | Msa1013430 | 0.817390 | 3.380550e-52 | -8.615850e-47 |
| Msa0826610 | Msa1130680 | 0.815357 | 9.634574e-52 | -8.615850e-47 |
| Msa0826610 | Msa1165700 | 0.807785 | 4.264926e-50 | -8.615850e-47 |
| Msa0826610 | Msa1413570 | 0.803837 | 2.880901e-49 | -8.615850e-47 |
| Msa0826610 | Msa1462580 | 0.826613 | 2.463816e-54 | -8.615850e-47 |
| Msa0127230 | Msa0826610 | 0.812390 | 4.343048e-51 | -8.615850e-47 |
| Msa0373350 | Msa0826610 | 0.839564 | 1.469408e-57 | -8.615850e-47 |
| Msa0421920 | Msa0826610 | 0.808675 | 2.756937e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0826610 | MtrunA17_Chr5g0447461 | 100.000 | 130 | 0 | 0 | 33 | 162 | 1 | 130 | 1.87e-93 | 266 |
| Msa0826610 | MtrunA17_Chr3g0128911 | 99.138 | 116 | 1 | 0 | 33 | 148 | 1 | 116 | 2.04e-82 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0826610 | AT2G40590.1 | 83.621 | 116 | 19 | 0 | 33 | 148 | 1 | 116 | 1.21e-68 | 204 |
| Msa0826610 | AT2G40510.1 | 83.621 | 116 | 19 | 0 | 33 | 148 | 1 | 116 | 1.80e-68 | 204 |
| Msa0826610 | AT3G56340.1 | 83.621 | 116 | 19 | 0 | 33 | 148 | 1 | 116 | 2.31e-68 | 203 |
Find 44 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTGTGATATTCATAATA+TGG | 0.273385 | 5_3:-67122759 | None:intergenic |
| GACCAGGCTGACCAGGCCTT+GGG | 0.278097 | 5_3:-67122480 | None:intergenic |
| CAATCAAGAGGTTTCTTGTT+AGG | 0.291662 | 5_3:+67120667 | Msa0826610:CDS |
| TGACCAGGCTGACCAGGCCT+TGG | 0.293734 | 5_3:-67122481 | None:intergenic |
| AGCTGCAGTTAGAGATGTTC+AGG | 0.305494 | 5_3:+67120704 | Msa0826610:CDS |
| GGTTCACAATATTAATAATA+TGG | 0.354275 | 5_3:-67122724 | None:intergenic |
| TTTGCTTGTTCGCGGCAGCT+AGG | 0.386901 | 5_3:-67120322 | None:intergenic |
| GGCGCTTGACCAGGCTGACC+AGG | 0.427155 | 5_3:-67122487 | None:intergenic |
| TAGACATTTAAGCGCAGAAA+TGG | 0.429840 | 5_3:+67120469 | Msa0826610:intron |
| GCCCCAAGGCCTGGTCAGCC+TGG | 0.433949 | 5_3:+67122478 | Msa0826610:CDS |
| TTTGGATTCATGTAGACAAA+AGG | 0.436476 | 5_3:+67122629 | Msa0826610:three_prime_UTR |
| GGAGCTCCTCCGGCTACAGC+AGG | 0.454172 | 5_3:-67122514 | None:intergenic |
| CTTTCTCCTTTGCTTGTTCG+CGG | 0.454429 | 5_3:-67120330 | None:intergenic |
| GCGCCTCGCCCTGCTGTAGC+CGG | 0.463568 | 5_3:+67122505 | Msa0826610:CDS |
| AAGGATGATGCCCCAAGGCC+TGG | 0.473726 | 5_3:+67122469 | Msa0826610:intron |
| ACCCTCCACAGCGTTTCATC+AGG | 0.473802 | 5_3:+67121249 | Msa0826610:CDS |
| GGGACAGCATTTACCACAGT+TGG | 0.475372 | 5_3:-67120539 | None:intergenic |
| GGCCACGACCATGTTTGTTA+CGG | 0.475572 | 5_3:-67120495 | None:intergenic |
| GCAGGGCGAGGCGCTTGACC+AGG | 0.476630 | 5_3:-67122496 | None:intergenic |
| GAGTTAGATCTCGCACTGAT+AGG | 0.485329 | 5_3:+67121216 | Msa0826610:CDS |
| CCTCCGGCTACAGCAGGGCG+AGG | 0.486107 | 5_3:-67122508 | None:intergenic |
| TTGCTTGTTCGCGGCAGCTA+GGG | 0.498142 | 5_3:-67120321 | None:intergenic |
| CGCCTGATGAAACGCTGTGG+AGG | 0.504436 | 5_3:-67121251 | None:intergenic |
| ATAATATGGTTGAAAAGCTA+AGG | 0.508278 | 5_3:-67122745 | None:intergenic |
| TAACTCTCACAACATGAGAA+TGG | 0.517819 | 5_3:-67121199 | None:intergenic |
| ACCAGGCTGACCAGGCCTTG+GGG | 0.531483 | 5_3:-67122479 | None:intergenic |
| CACAGCGTTTCATCAGGCGC+AGG | 0.535977 | 5_3:+67121255 | Msa0826610:CDS |
| TGCATCTTCACATACAGCTT+AGG | 0.540851 | 5_3:-67121155 | None:intergenic |
| TTCATTCGTTGCTCCAACTG+TGG | 0.541200 | 5_3:+67120526 | Msa0826610:CDS |
| CCTCGCCCTGCTGTAGCCGG+AGG | 0.543172 | 5_3:+67122508 | Msa0826610:CDS |
| TTAGATCTCGCACTGATAGG+AGG | 0.569205 | 5_3:+67121219 | Msa0826610:CDS |
| ACATTTAAGCGCAGAAATGG+AGG | 0.573713 | 5_3:+67120472 | Msa0826610:CDS |
| GGCCGTAACAAACATGGTCG+TGG | 0.575945 | 5_3:+67120493 | Msa0826610:CDS |
| GGTACGGACAGGAGCTCCTC+CGG | 0.581569 | 5_3:-67122524 | None:intergenic |
| TAGCTGCCGCGAACAAGCAA+AGG | 0.587907 | 5_3:+67120324 | Msa0826610:CDS |
| GCCTGATGAAACGCTGTGGA+GGG | 0.592960 | 5_3:-67121250 | None:intergenic |
| AATGGAGGCCGTAACAAACA+TGG | 0.615814 | 5_3:+67120487 | Msa0826610:CDS |
| CTGTGGTAAATGCTGTCCCA+AGG | 0.625759 | 5_3:+67120543 | Msa0826610:CDS |
| GAGCTCCTCCGGCTACAGCA+GGG | 0.629074 | 5_3:-67122513 | None:intergenic |
| ACAGCGTTTCATCAGGCGCA+GGG | 0.646586 | 5_3:+67121256 | Msa0826610:CDS |
| ACAAGCAAAGGAGAAAGCAA+AGG | 0.652515 | 5_3:+67120336 | Msa0826610:CDS |
| AGCAACGAATGAATTTGACA+TGG | 0.665067 | 5_3:-67120516 | None:intergenic |
| AACAGGACAAGGCAATCAAG+AGG | 0.667211 | 5_3:+67120655 | Msa0826610:intron |
| CTGCGCCTGATGAAACGCTG+TGG | 0.679468 | 5_3:-67121254 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTGTTTTTTTTTTTTTTTT+TGG | + | chr5_3:67121103-67121122 | Msa0826610:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTTGGT+TGG | + | chr5_3:67121107-67121126 | Msa0826610:intron | 10.0% |
| !!! | TTTGTTTATTTCTTTTTTAA+AGG | + | chr5_3:67122450-67122469 | Msa0826610:intron | 10.0% |
| !!! | AAATTTTTAAAAACAAGAAA+CGG | - | chr5_3:67122611-67122630 | None:intergenic | 10.0% |
| !!! | TTTCTTGTTTTTAAAAATTT+TGG | + | chr5_3:67122611-67122630 | Msa0826610:three_prime_UTR | 10.0% |
| !! | AAAAAAACAGAAAAATCTTA+CGG | - | chr5_3:67120746-67120765 | None:intergenic | 15.0% |
| !!! | TTTTTATTAGATAGATTTCT+AGG | - | chr5_3:67121882-67121901 | None:intergenic | 15.0% |
| !! | CAGCAAAATATATAATTATA+AGG | - | chr5_3:67122405-67122424 | None:intergenic | 15.0% |
| !!! | TTCTTGTCATTAATATTTTA+TGG | + | chr5_3:67122679-67122698 | Msa0826610:three_prime_UTR | 15.0% |
| !!! | TCATTAATATTTTATGGTTT+TGG | + | chr5_3:67122685-67122704 | Msa0826610:three_prime_UTR | 15.0% |
| !! | AAATTGTGATATTCATAATA+TGG | - | chr5_3:67122762-67122781 | None:intergenic | 15.0% |
| !!! | AATTTTCCAAATACACATTA+TGG | + | chr5_3:67120781-67120800 | Msa0826610:intron | 20.0% |
| !!! | ATTTTCCAAATACACATTAT+GGG | + | chr5_3:67120782-67120801 | Msa0826610:intron | 20.0% |
| !!! | AAAGGATTTGAAATTTATGT+AGG | - | chr5_3:67121038-67121057 | None:intergenic | 20.0% |
| !! | ATAAATTTCAAATCCTTTGT+AGG | + | chr5_3:67121040-67121059 | Msa0826610:intron | 20.0% |
| !! | TAAATTTCAAATCCTTTGTA+GGG | + | chr5_3:67121041-67121060 | Msa0826610:intron | 20.0% |
| !! | AAAAAAAACAGAATCAGTTA+AGG | - | chr5_3:67121095-67121114 | None:intergenic | 20.0% |
| !! | TCTTAAGTTAATAAAACACA+TGG | + | chr5_3:67121407-67121426 | Msa0826610:intron | 20.0% |
| !!! | GATTTAGATTTTTCATATAG+TGG | + | chr5_3:67121540-67121559 | Msa0826610:intron | 20.0% |
| !!! | GGCTAAATTTTATTTAATAC+AGG | - | chr5_3:67122180-67122199 | None:intergenic | 20.0% |
| !!! | ATTTTGCTGTTTATTTTAGT+TGG | + | chr5_3:67122416-67122435 | Msa0826610:intron | 20.0% |
| !! | GGTTCACAATATTAATAATA+TGG | - | chr5_3:67122727-67122746 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTTGTTTGTGAAC+AGG | + | chr5_3:67120638-67120657 | Msa0826610:intron | 25.0% |
| ! | GTGTATTTGGAAAATTACAT+GGG | - | chr5_3:67120777-67120796 | None:intergenic | 25.0% |
| ! | TGTGTATTTGGAAAATTACA+TGG | - | chr5_3:67120778-67120797 | None:intergenic | 25.0% |
| ! | AAAAACATGAAAACTGAAAG+AGG | - | chr5_3:67121300-67121319 | None:intergenic | 25.0% |
| !!! | TCATGTTTTTGTTACTAACT+AGG | + | chr5_3:67121310-67121329 | Msa0826610:intron | 25.0% |
| !! | ACTTTTGATACTTGAAACTT+TGG | + | chr5_3:67121481-67121500 | Msa0826610:intron | 25.0% |
| ! | ATACTTTAGGTACTAAATTG+CGG | - | chr5_3:67121621-67121640 | None:intergenic | 25.0% |
| ! | AATAGTGTTGTATCTAATTC+CGG | - | chr5_3:67121686-67121705 | None:intergenic | 25.0% |
| ! | TATAACAGAAACAGAAAGTA+AGG | - | chr5_3:67121922-67121941 | None:intergenic | 25.0% |
| ! | AAATGTATCACAAATTTACG+AGG | + | chr5_3:67122134-67122153 | Msa0826610:intron | 25.0% |
| !!! | TTGAAATTTGCTTTTAGGTA+CGG | - | chr5_3:67122543-67122562 | None:intergenic | 25.0% |
| ! | TAAAAACAAGAAACGGAAAT+TGG | - | chr5_3:67122604-67122623 | None:intergenic | 25.0% |
| ! | ATAATATGGTTGAAAAGCTA+AGG | - | chr5_3:67122748-67122767 | None:intergenic | 25.0% |
| !! | TTTGAGATTTTCAGCAACAA+TGG | + | chr5_3:67120360-67120379 | Msa0826610:CDS | 30.0% |
| TCTCTGATCTATTCATTTCT+CGG | + | chr5_3:67120415-67120434 | Msa0826610:intron | 30.0% | |
| ATGACAAAGTGAAATACCTT+GGG | - | chr5_3:67120562-67120581 | None:intergenic | 30.0% | |
| AATGACAAAGTGAAATACCT+TGG | - | chr5_3:67120563-67120582 | None:intergenic | 30.0% | |
| TTCATTTCATAAGCTTGTCT+AGG | + | chr5_3:67120877-67120896 | Msa0826610:intron | 30.0% | |
| TTTCATAAGCTCAATCTGAA+TGG | + | chr5_3:67121011-67121030 | Msa0826610:intron | 30.0% | |
| TTCATAAGCTCAATCTGAAT+GGG | + | chr5_3:67121012-67121031 | Msa0826610:intron | 30.0% | |
| ATTGCCTATGAAATTGTGTA+TGG | + | chr5_3:67121344-67121363 | Msa0826610:intron | 30.0% | |
| GCATAACAAAGACATAAGAA+TGG | - | chr5_3:67121443-67121462 | None:intergenic | 30.0% | |
| CAGCAATTTGACAATACTTT+AGG | - | chr5_3:67121634-67121653 | None:intergenic | 30.0% | |
| TCTATAGCACTATATCATAC+CGG | + | chr5_3:67121664-67121683 | Msa0826610:intron | 30.0% | |
| TAACACAATGATGTCAAATG+TGG | - | chr5_3:67121718-67121737 | None:intergenic | 30.0% | |
| GATGACATACTACATTGAAA+AGG | - | chr5_3:67121788-67121807 | None:intergenic | 30.0% | |
| TGAACGCACATTATTTGAAT+AGG | + | chr5_3:67121815-67121834 | Msa0826610:intron | 30.0% | |
| ! | GATTTGATAGATGGAGTATT+AGG | - | chr5_3:67121848-67121867 | None:intergenic | 30.0% |
| ! | CAAGTTTAGGATTTGATAGA+TGG | - | chr5_3:67121857-67121876 | None:intergenic | 30.0% |
| ! | AGATTTCTAGGAACAAGTTT+AGG | - | chr5_3:67121870-67121889 | None:intergenic | 30.0% |
| !! | TTAGTTTGCTTTACATAGTG+TGG | + | chr5_3:67121985-67122004 | Msa0826610:intron | 30.0% |
| ACGGTTTATCAGATCTTATA+TGG | + | chr5_3:67122084-67122103 | Msa0826610:intron | 30.0% | |
| CATTGCAAACCAAAATGAAA+AGG | + | chr5_3:67122203-67122222 | Msa0826610:intron | 30.0% | |
| TTTGTGAACCAAACAAAGAT+AGG | + | chr5_3:67122260-67122279 | Msa0826610:intron | 30.0% | |
| GGACTTAATTAGATATTGCT+TGG | - | chr5_3:67122295-67122314 | None:intergenic | 30.0% | |
| ATTGAAATACGGAGAAAGTA+TGG | - | chr5_3:67122339-67122358 | None:intergenic | 30.0% | |
| AATCCAGACTCATTGAAATA+CGG | - | chr5_3:67122350-67122369 | None:intergenic | 30.0% | |
| TATTTCAATGAGTCTGGATT+TGG | + | chr5_3:67122350-67122369 | Msa0826610:intron | 30.0% | |
| !! | AGCTCTTGAAATTTGCTTTT+AGG | - | chr5_3:67122548-67122567 | None:intergenic | 30.0% |
| !!! | GAGCTTTTGTAGTTTTGAAT+CGG | + | chr5_3:67122563-67122582 | Msa0826610:three_prime_UTR | 30.0% |
| TTTGGATTCATGTAGACAAA+AGG | + | chr5_3:67122629-67122648 | Msa0826610:three_prime_UTR | 30.0% | |
| TAGACATTTAAGCGCAGAAA+TGG | + | chr5_3:67120469-67120488 | Msa0826610:intron | 35.0% | |
| AGCAACGAATGAATTTGACA+TGG | - | chr5_3:67120519-67120538 | None:intergenic | 35.0% | |
| !! | TTTTGTTTGTGAACAGGACA+AGG | + | chr5_3:67120644-67120663 | Msa0826610:intron | 35.0% |
| CAATCAAGAGGTTTCTTGTT+AGG | + | chr5_3:67120667-67120686 | Msa0826610:CDS | 35.0% | |
| ACAGACCCATAATGTGTATT+TGG | - | chr5_3:67120790-67120809 | None:intergenic | 35.0% | |
| ATACACATTATGGGTCTGTT+TGG | + | chr5_3:67120791-67120810 | Msa0826610:intron | 35.0% | |
| ! | AAAAACACACAAGCTAGTCT+AGG | + | chr5_3:67120910-67120929 | Msa0826610:intron | 35.0% |
| AATCACGATAAACCCTACAA+AGG | - | chr5_3:67121056-67121075 | None:intergenic | 35.0% | |
| TAACTCTCACAACATGAGAA+TGG | - | chr5_3:67121202-67121221 | None:intergenic | 35.0% | |
| GTCTCCATACACAATTTCAT+AGG | - | chr5_3:67121351-67121370 | None:intergenic | 35.0% | |
| ! | TTGTCAAATTGCTGTTATCG+CGG | + | chr5_3:67121640-67121659 | Msa0826610:intron | 35.0% |
| ACATACTACATTGAAAAGGC+AGG | - | chr5_3:67121784-67121803 | None:intergenic | 35.0% | |
| TTTGCTTTACATAGTGTGGT+TGG | + | chr5_3:67121989-67122008 | Msa0826610:intron | 35.0% | |
| !!! | TCATTTTGGTTTGCAATGAG+AGG | - | chr5_3:67122201-67122220 | None:intergenic | 35.0% |
| ! | GGAGAATAGCCTTTTCATTT+TGG | - | chr5_3:67122215-67122234 | None:intergenic | 35.0% |
| ! | TTTGGTTCACAAAGAGGATA+GGG | - | chr5_3:67122253-67122272 | None:intergenic | 35.0% |
| ! | TCTTTGTTTGGTTCACAAAG+AGG | - | chr5_3:67122259-67122278 | None:intergenic | 35.0% |
| ! | AAAGTATGGATGGGTTTGAT+TGG | - | chr5_3:67122325-67122344 | None:intergenic | 35.0% |
| ! | AATACGGAGAAAGTATGGAT+GGG | - | chr5_3:67122334-67122353 | None:intergenic | 35.0% |
| ! | AAATACGGAGAAAGTATGGA+TGG | - | chr5_3:67122335-67122354 | None:intergenic | 35.0% |
| ACAAGCAAAGGAGAAAGCAA+AGG | + | chr5_3:67120336-67120355 | Msa0826610:CDS | 40.0% | |
| ACATTTAAGCGCAGAAATGG+AGG | + | chr5_3:67120472-67120491 | Msa0826610:CDS | 40.0% | |
| TGCATCTTCACATACAGCTT+AGG | - | chr5_3:67121158-67121177 | None:intergenic | 40.0% | |
| GTTGCTTGAGTGTATATCAG+TGG | + | chr5_3:67121952-67121971 | Msa0826610:intron | 40.0% | |
| TTTACATAGTGTGGTTGGAG+TGG | + | chr5_3:67121994-67122013 | Msa0826610:intron | 40.0% | |
| TTACATAGTGTGGTTGGAGT+GGG | + | chr5_3:67121995-67122014 | Msa0826610:intron | 40.0% | |
| ACAAAACCCCCAATATAGGA+GGG | - | chr5_3:67122055-67122074 | None:intergenic | 40.0% | |
| TACAAAACCCCCAATATAGG+AGG | - | chr5_3:67122056-67122075 | None:intergenic | 40.0% | |
| !! | TCCTATATTGGGGGTTTTGT+AGG | + | chr5_3:67122055-67122074 | Msa0826610:intron | 40.0% |
| TCCTACAAAACCCCCAATAT+AGG | - | chr5_3:67122059-67122078 | None:intergenic | 40.0% | |
| ATAGGGGAAATTAATCGACG+GGG | - | chr5_3:67122236-67122255 | None:intergenic | 40.0% | |
| GATAGGGGAAATTAATCGAC+GGG | - | chr5_3:67122237-67122256 | None:intergenic | 40.0% | |
| GGATAGGGGAAATTAATCGA+CGG | - | chr5_3:67122238-67122257 | None:intergenic | 40.0% | |
| TTGGTTCACAAAGAGGATAG+GGG | - | chr5_3:67122252-67122271 | None:intergenic | 40.0% | |
| ! | GTTTGGTTCACAAAGAGGAT+AGG | - | chr5_3:67122254-67122273 | None:intergenic | 40.0% |
| TCACAGAGCCTATCTTTGTT+TGG | - | chr5_3:67122271-67122290 | None:intergenic | 40.0% | |
| ! | TATGGATGGGTTTGATTGGA+GGG | - | chr5_3:67122321-67122340 | None:intergenic | 40.0% |
| TCTCCGTATTTCAATGAGTC+TGG | + | chr5_3:67122344-67122363 | Msa0826610:intron | 40.0% | |
| TTCAATGAGTCTGGATTTGG+TGG | + | chr5_3:67122353-67122372 | Msa0826610:intron | 40.0% | |
| !! | TTTTAAAGGATGATGCCCCA+AGG | + | chr5_3:67122464-67122483 | Msa0826610:intron | 40.0% |
| !! | ATTTGCTTTTAGGTACGGAC+AGG | - | chr5_3:67122538-67122557 | None:intergenic | 40.0% |
| CTTTCTCCTTTGCTTGTTCG+CGG | - | chr5_3:67120333-67120352 | None:intergenic | 45.0% | |
| AATGGAGGCCGTAACAAACA+TGG | + | chr5_3:67120487-67120506 | Msa0826610:CDS | 45.0% | |
| TTCATTCGTTGCTCCAACTG+TGG | + | chr5_3:67120526-67120545 | Msa0826610:CDS | 45.0% | |
| AACAGGACAAGGCAATCAAG+AGG | + | chr5_3:67120655-67120674 | Msa0826610:intron | 45.0% | |
| AGCTGCAGTTAGAGATGTTC+AGG | + | chr5_3:67120704-67120723 | Msa0826610:CDS | 45.0% | |
| ! | GAGTTAGATCTCGCACTGAT+AGG | + | chr5_3:67121216-67121235 | Msa0826610:CDS | 45.0% |
| ! | TTAGATCTCGCACTGATAGG+AGG | + | chr5_3:67121219-67121238 | Msa0826610:CDS | 45.0% |
| TAAACGACACAGCAGTGCAA+AGG | - | chr5_3:67121520-67121539 | None:intergenic | 45.0% | |
| TACATAGTGTGGTTGGAGTG+GGG | + | chr5_3:67121996-67122015 | Msa0826610:intron | 45.0% | |
| CAAAACCCCCAATATAGGAG+GGG | - | chr5_3:67122054-67122073 | None:intergenic | 45.0% | |
| ! | ATGGATGGGTTTGATTGGAG+GGG | - | chr5_3:67122320-67122339 | None:intergenic | 45.0% |
| ! | GTATGGATGGGTTTGATTGG+AGG | - | chr5_3:67122322-67122341 | None:intergenic | 45.0% |
| ! | GGCCACGACCATGTTTGTTA+CGG | - | chr5_3:67120498-67120517 | None:intergenic | 50.0% |
| GGGACAGCATTTACCACAGT+TGG | - | chr5_3:67120542-67120561 | None:intergenic | 50.0% | |
| CTGTGGTAAATGCTGTCCCA+AGG | + | chr5_3:67120543-67120562 | Msa0826610:CDS | 50.0% | |
| ACATAGTGTGGTTGGAGTGG+GGG | + | chr5_3:67121997-67122016 | Msa0826610:intron | 50.0% | |
| GAGCAGGAATTGAGTAGGGA+AGG | - | chr5_3:67122032-67122051 | None:intergenic | 50.0% | |
| AGGGGAGCAGGAATTGAGTA+GGG | - | chr5_3:67122036-67122055 | None:intergenic | 50.0% | |
| TTCCTGCTCCCCTCCTATAT+TGG | + | chr5_3:67122043-67122062 | Msa0826610:intron | 50.0% | |
| TCCTGCTCCCCTCCTATATT+GGG | + | chr5_3:67122044-67122063 | Msa0826610:intron | 50.0% | |
| !! | GGGGTTTTGTAGGAGAGCAA+CGG | + | chr5_3:67122065-67122084 | Msa0826610:intron | 50.0% |
| ATGGGTTTGATTGGAGGGGA+TGG | - | chr5_3:67122316-67122335 | None:intergenic | 50.0% | |
| TTGCTTGTTCGCGGCAGCTA+GGG | - | chr5_3:67120324-67120343 | None:intergenic | 55.0% | |
| TTTGCTTGTTCGCGGCAGCT+AGG | - | chr5_3:67120325-67120344 | None:intergenic | 55.0% | |
| TAGCTGCCGCGAACAAGCAA+AGG | + | chr5_3:67120324-67120343 | Msa0826610:CDS | 55.0% | |
| GGCCGTAACAAACATGGTCG+TGG | + | chr5_3:67120493-67120512 | Msa0826610:CDS | 55.0% | |
| ACCCTCCACAGCGTTTCATC+AGG | + | chr5_3:67121249-67121268 | Msa0826610:CDS | 55.0% | |
| GCCTGATGAAACGCTGTGGA+GGG | - | chr5_3:67121253-67121272 | None:intergenic | 55.0% | |
| ACAGCGTTTCATCAGGCGCA+GGG | + | chr5_3:67121256-67121275 | Msa0826610:CDS | 55.0% | |
| CATAGTGTGGTTGGAGTGGG+GGG | + | chr5_3:67121998-67122017 | Msa0826610:intron | 55.0% | |
| GAGGGGAGCAGGAATTGAGT+AGG | - | chr5_3:67122037-67122056 | None:intergenic | 55.0% | |
| CCTGCTCCCCTCCTATATTG+GGG | + | chr5_3:67122045-67122064 | Msa0826610:intron | 55.0% | |
| CTGCTCCCCTCCTATATTGG+GGG | + | chr5_3:67122046-67122065 | Msa0826610:intron | 55.0% | |
| CGCCTGATGAAACGCTGTGG+AGG | - | chr5_3:67121254-67121273 | None:intergenic | 60.0% | |
| CTGCGCCTGATGAAACGCTG+TGG | - | chr5_3:67121257-67121276 | None:intergenic | 60.0% | |
| CACAGCGTTTCATCAGGCGC+AGG | + | chr5_3:67121255-67121274 | Msa0826610:CDS | 60.0% | |
| CCCCAATATAGGAGGGGAGC+AGG | - | chr5_3:67122048-67122067 | None:intergenic | 60.0% | |
| AAGGATGATGCCCCAAGGCC+TGG | + | chr5_3:67122469-67122488 | Msa0826610:intron | 60.0% | |
| ACCAGGCTGACCAGGCCTTG+GGG | - | chr5_3:67122482-67122501 | None:intergenic | 65.0% | |
| GACCAGGCTGACCAGGCCTT+GGG | - | chr5_3:67122483-67122502 | None:intergenic | 65.0% | |
| TGACCAGGCTGACCAGGCCT+TGG | - | chr5_3:67122484-67122503 | None:intergenic | 65.0% | |
| GAGCTCCTCCGGCTACAGCA+GGG | - | chr5_3:67122516-67122535 | None:intergenic | 65.0% | |
| GGTACGGACAGGAGCTCCTC+CGG | - | chr5_3:67122527-67122546 | None:intergenic | 65.0% | |
| GGCGCTTGACCAGGCTGACC+AGG | - | chr5_3:67122490-67122509 | None:intergenic | 70.0% | |
| GGAGCTCCTCCGGCTACAGC+AGG | - | chr5_3:67122517-67122536 | None:intergenic | 70.0% | |
| GCCCCAAGGCCTGGTCAGCC+TGG | + | chr5_3:67122478-67122497 | Msa0826610:CDS | 75.0% | |
| ! | GCAGGGCGAGGCGCTTGACC+AGG | - | chr5_3:67122499-67122518 | None:intergenic | 75.0% |
| GCGCCTCGCCCTGCTGTAGC+CGG | + | chr5_3:67122505-67122524 | Msa0826610:CDS | 75.0% | |
| CCTCCGGCTACAGCAGGGCG+AGG | - | chr5_3:67122511-67122530 | None:intergenic | 75.0% | |
| CCTCGCCCTGCTGTAGCCGG+AGG | + | chr5_3:67122508-67122527 | Msa0826610:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 67120283 | 67122788 | 67120283 | ID=Msa0826610;Name=Msa0826610 |
| chr5_3 | mRNA | 67120283 | 67122788 | 67120283 | ID=Msa0826610-mRNA-1;Parent=Msa0826610;Name=Msa0826610-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.8|1|1|1|5|239|162 |
| chr5_3 | exon | 67120283 | 67120381 | 67120283 | ID=Msa0826610-mRNA-1:exon:21054;Parent=Msa0826610-mRNA-1 |
| chr5_3 | exon | 67120472 | 67120564 | 67120472 | ID=Msa0826610-mRNA-1:exon:21055;Parent=Msa0826610-mRNA-1 |
| chr5_3 | exon | 67120660 | 67120744 | 67120660 | ID=Msa0826610-mRNA-1:exon:21056;Parent=Msa0826610-mRNA-1 |
| chr5_3 | exon | 67121144 | 67121277 | 67121144 | ID=Msa0826610-mRNA-1:exon:21057;Parent=Msa0826610-mRNA-1 |
| chr5_3 | exon | 67122472 | 67122788 | 67122472 | ID=Msa0826610-mRNA-1:exon:21058;Parent=Msa0826610-mRNA-1 |
| chr5_3 | CDS | 67120283 | 67120381 | 67120283 | ID=Msa0826610-mRNA-1:cds;Parent=Msa0826610-mRNA-1 |
| chr5_3 | CDS | 67120472 | 67120564 | 67120472 | ID=Msa0826610-mRNA-1:cds;Parent=Msa0826610-mRNA-1 |
| chr5_3 | CDS | 67120660 | 67120744 | 67120660 | ID=Msa0826610-mRNA-1:cds;Parent=Msa0826610-mRNA-1 |
| chr5_3 | CDS | 67121144 | 67121277 | 67121144 | ID=Msa0826610-mRNA-1:cds;Parent=Msa0826610-mRNA-1 |
| chr5_3 | CDS | 67122472 | 67122549 | 67122472 | ID=Msa0826610-mRNA-1:cds;Parent=Msa0826610-mRNA-1 |
| chr5_3 | three_prime_UTR | 67122550 | 67122788 | 67122550 | ID=Msa0826610-mRNA-1:three_prime_utr;Parent=Msa0826610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
