Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1413570 | sp|Q93VI3|RL171_ARATH | 87.861 | 173 | 21 | 0 | 25 | 197 | 1 | 173 | 4.79e-113 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1413570 | I3SHA1 | 98.844 | 173 | 2 | 0 | 25 | 197 | 1 | 173 | 1.47e-124 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa1413570 | 0.842324 | 2.772924e-58 | -8.615850e-47 |
| Msa0003030 | Msa1413570 | 0.855239 | 7.207709e-62 | -8.615850e-47 |
| Msa0003330 | Msa1413570 | 0.838957 | 2.111645e-57 | -8.615850e-47 |
| Msa0042510 | Msa1413570 | 0.897730 | 1.059341e-76 | -8.615850e-47 |
| Msa0079560 | Msa1413570 | 0.905036 | 6.559472e-80 | -8.615850e-47 |
| Msa0086160 | Msa1413570 | 0.834976 | 2.194941e-56 | -8.615850e-47 |
| Msa0094210 | Msa1413570 | 0.839044 | 2.005014e-57 | -8.615850e-47 |
| Msa0116600 | Msa1413570 | 0.844601 | 6.835295e-59 | -8.615850e-47 |
| Msa0116690 | Msa1413570 | 0.836083 | 1.152146e-56 | -8.615850e-47 |
| Msa1351020 | Msa1413570 | 0.906823 | 9.827034e-81 | -8.615850e-47 |
| Msa1363910 | Msa1413570 | 0.824975 | 6.032725e-54 | -8.615850e-47 |
| Msa1363930 | Msa1413570 | 0.910594 | 1.573660e-82 | -8.615850e-47 |
| Msa1366540 | Msa1413570 | 0.855856 | 4.762512e-62 | -8.615850e-47 |
| Msa1385480 | Msa1413570 | 0.868993 | 4.320266e-66 | -8.615850e-47 |
| Msa1387750 | Msa1413570 | 0.906233 | 1.845696e-80 | -8.615850e-47 |
| Msa1390760 | Msa1413570 | 0.917735 | 3.695832e-86 | -8.615850e-47 |
| Msa1403520 | Msa1413570 | 0.840837 | 6.834196e-58 | -8.615850e-47 |
| Msa1407550 | Msa1413570 | 0.921077 | 5.675622e-88 | -8.615850e-47 |
| Msa1413570 | Msa1424570 | 0.827663 | 1.381175e-54 | -8.615850e-47 |
| Msa1413570 | Msa1432310 | 0.952359 | 2.874133e-110 | -8.615850e-47 |
| Msa1413570 | Msa1446510 | 0.874572 | 6.082127e-68 | -8.615850e-47 |
| Msa1413570 | Msa1450560 | 0.844206 | 8.724545e-59 | -8.615850e-47 |
| Msa1413570 | Msa1453530 | 0.802497 | 5.455202e-49 | -8.615850e-47 |
| Msa1413570 | Msa1462580 | 0.811455 | 6.943340e-51 | -8.615850e-47 |
| Msa1413570 | Msa1463510 | 0.856458 | 3.173015e-62 | -8.615850e-47 |
| Msa1413570 | Msa1463570 | 0.851390 | 9.154371e-61 | -8.615850e-47 |
| Msa1413570 | Msa1465700 | 0.856076 | 4.108938e-62 | -8.615850e-47 |
| Msa1413570 | Msa1465890 | 0.844224 | 8.629955e-59 | -8.615850e-47 |
| Msa0602900 | Msa1413570 | 0.863675 | 2.101491e-64 | -8.615850e-47 |
| Msa0605600 | Msa1413570 | 0.831637 | 1.490835e-55 | -8.615850e-47 |
| Msa0605890 | Msa1413570 | 0.826627 | 2.445487e-54 | -8.615850e-47 |
| Msa0609120 | Msa1413570 | 0.856162 | 3.875062e-62 | -8.615850e-47 |
| Msa0619230 | Msa1413570 | 0.916873 | 1.053584e-85 | -8.615850e-47 |
| Msa0621190 | Msa1413570 | 0.897696 | 1.094951e-76 | -8.615850e-47 |
| Msa0643960 | Msa1413570 | 0.858560 | 7.573624e-63 | -8.615850e-47 |
| Msa0649890 | Msa1413570 | 0.814391 | 1.577679e-51 | -8.615850e-47 |
| Msa0656450 | Msa1413570 | 0.998505 | 4.483141e-267 | -8.615850e-47 |
| Msa0663400 | Msa1413570 | 0.801404 | 9.150420e-49 | -8.615850e-47 |
| Msa0667110 | Msa1413570 | 0.804601 | 1.997857e-49 | -8.615850e-47 |
| Msa0691760 | Msa1413570 | 0.903927 | 2.089204e-79 | -8.615850e-47 |
| Msa0694400 | Msa1413570 | 0.875265 | 3.532037e-68 | -8.615850e-47 |
| Msa0700370 | Msa1413570 | 0.927009 | 2.131601e-91 | -8.615850e-47 |
| Msa0704860 | Msa1413570 | 0.847505 | 1.108442e-59 | -8.615850e-47 |
| Msa0708630 | Msa1413570 | 0.859496 | 3.972725e-63 | -8.615850e-47 |
| Msa0759660 | Msa1413570 | 0.816694 | 4.846919e-52 | -8.615850e-47 |
| Msa0790450 | Msa1413570 | 0.840553 | 8.114433e-58 | -8.615850e-47 |
| Msa0798590 | Msa1413570 | 0.802219 | 6.224967e-49 | -8.615850e-47 |
| Msa0826610 | Msa1413570 | 0.803837 | 2.880901e-49 | -8.615850e-47 |
| Msa0123290 | Msa1413570 | 0.830311 | 3.154590e-55 | -8.615850e-47 |
| Msa0127230 | Msa1413570 | 0.898708 | 4.070361e-77 | -8.615850e-47 |
| Msa0128330 | Msa1413570 | 0.859203 | 4.866086e-63 | -8.615850e-47 |
| Msa0132460 | Msa1413570 | 0.857835 | 1.244956e-62 | -8.615850e-47 |
| Msa0134580 | Msa1413570 | 0.804268 | 2.343938e-49 | -8.615850e-47 |
| Msa0146910 | Msa1413570 | 0.852999 | 3.193087e-61 | -8.615850e-47 |
| Msa0167860 | Msa1413570 | 0.844876 | 5.760042e-59 | -8.615850e-47 |
| Msa0168320 | Msa1413570 | 0.858547 | 7.646050e-63 | -8.615850e-47 |
| Msa0172300 | Msa1413570 | 0.809311 | 2.015018e-50 | -8.615850e-47 |
| Msa0174580 | Msa1413570 | 0.850021 | 2.222030e-60 | -8.615850e-47 |
| Msa0182050 | Msa1413570 | 0.862159 | 6.174423e-64 | -8.615850e-47 |
| Msa0182100 | Msa1413570 | 0.881209 | 2.902068e-70 | -8.615850e-47 |
| Msa0188740 | Msa1413570 | 0.840492 | 8.415451e-58 | -8.615850e-47 |
| Msa0191550 | Msa1413570 | 0.807207 | 5.656838e-50 | -8.615850e-47 |
| Msa0192300 | Msa1413570 | 0.888504 | 5.567930e-73 | -8.615850e-47 |
| Msa0216200 | Msa1413570 | 0.828540 | 8.494191e-55 | -8.615850e-47 |
| Msa0233550 | Msa1413570 | 0.871835 | 5.047465e-67 | -8.615850e-47 |
| Msa1227350 | Msa1413570 | 0.873843 | 1.074044e-67 | -8.615850e-47 |
| Msa1235950 | Msa1413570 | 0.864611 | 1.073634e-64 | -8.615850e-47 |
| Msa1235980 | Msa1413570 | 0.871125 | 8.672672e-67 | -8.615850e-47 |
| Msa1237040 | Msa1413570 | 0.846537 | 2.040564e-59 | -8.615850e-47 |
| Msa1245270 | Msa1413570 | 0.844083 | 9.415996e-59 | -8.615850e-47 |
| Msa1284800 | Msa1413570 | 0.877383 | 6.567058e-69 | -8.615850e-47 |
| Msa1296090 | Msa1413570 | 0.826139 | 3.195454e-54 | -8.615850e-47 |
| Msa1316100 | Msa1413570 | 0.818918 | 1.525459e-52 | -8.615850e-47 |
| Msa1317390 | Msa1413570 | 0.894117 | 3.331891e-75 | -8.615850e-47 |
| Msa0371490 | Msa1413570 | 0.867252 | 1.569456e-65 | -8.615850e-47 |
| Msa0373350 | Msa1413570 | 0.896285 | 4.271885e-76 | -8.615850e-47 |
| Msa0376850 | Msa1413570 | 0.873077 | 1.944067e-67 | -8.615850e-47 |
| Msa0377610 | Msa1413570 | 0.809758 | 1.615341e-50 | -8.615850e-47 |
| Msa0382670 | Msa1413570 | 0.833884 | 4.126507e-56 | -8.615850e-47 |
| Msa0387290 | Msa1413570 | 0.872135 | 4.012839e-67 | -8.615850e-47 |
| Msa0388520 | Msa1413570 | 0.869505 | 2.944339e-66 | -8.615850e-47 |
| Msa0416470 | Msa1413570 | 0.827429 | 1.572057e-54 | -8.615850e-47 |
| Msa0421920 | Msa1413570 | 0.873174 | 1.803719e-67 | -8.615850e-47 |
| Msa0426090 | Msa1413570 | 0.815954 | 7.093128e-52 | -8.615850e-47 |
| Msa0426250 | Msa1413570 | 0.807425 | 5.086164e-50 | -8.615850e-47 |
| Msa0426820 | Msa1413570 | 0.810843 | 9.420250e-51 | -8.615850e-47 |
| Msa0426940 | Msa1413570 | 0.842565 | 2.392278e-58 | -8.615850e-47 |
| Msa0467740 | Msa1413570 | 0.852523 | 4.366929e-61 | -8.615850e-47 |
| Msa0472480 | Msa1413570 | 0.814789 | 1.288033e-51 | -8.615850e-47 |
| Msa0477670 | Msa1413570 | 0.832208 | 1.077981e-55 | -8.615850e-47 |
| Msa0482560 | Msa1413570 | 0.816439 | 5.526603e-52 | -8.615850e-47 |
| Msa0987570 | Msa1413570 | 0.812289 | 4.568736e-51 | -8.615850e-47 |
| Msa0998890 | Msa1413570 | 0.809220 | 2.107275e-50 | -8.615850e-47 |
| Msa1068660 | Msa1413570 | 0.807030 | 6.168378e-50 | -8.615850e-47 |
| Msa1082050 | Msa1413570 | 0.852695 | 3.898998e-61 | -8.615850e-47 |
| Msa1093500 | Msa1413570 | 0.809347 | 1.978996e-50 | -8.615850e-47 |
| Msa0239420 | Msa1413570 | 0.839034 | 2.017099e-57 | -8.615850e-47 |
| Msa0256350 | Msa1413570 | 0.842114 | 3.149875e-58 | -8.615850e-47 |
| Msa0270160 | Msa1413570 | 0.858063 | 1.065259e-62 | -8.615850e-47 |
| Msa0274940 | Msa1413570 | 0.816016 | 6.871663e-52 | -8.615850e-47 |
| Msa0277600 | Msa1413570 | 0.847235 | 1.314382e-59 | -8.615850e-47 |
| Msa0301250 | Msa1413570 | 0.894043 | 3.572143e-75 | -8.615850e-47 |
| Msa0313060 | Msa1413570 | 0.880193 | 6.715274e-70 | -8.615850e-47 |
| Msa0315430 | Msa1413570 | 0.829999 | 3.759946e-55 | -8.615850e-47 |
| Msa1124980 | Msa1413570 | 0.813632 | 2.320229e-51 | -8.615850e-47 |
| Msa1126690 | Msa1413570 | 0.850837 | 1.311082e-60 | -8.615850e-47 |
| Msa1144610 | Msa1413570 | 0.800182 | 1.624855e-48 | -8.615850e-47 |
| Msa1144630 | Msa1413570 | 0.908795 | 1.156168e-81 | -8.615850e-47 |
| Msa1165210 | Msa1413570 | 0.822333 | 2.505014e-53 | -8.615850e-47 |
| Msa1165700 | Msa1413570 | 0.895786 | 6.880556e-76 | -8.615850e-47 |
| Msa1167360 | Msa1413570 | 0.807411 | 5.120692e-50 | -8.615850e-47 |
| Msa1180000 | Msa1413570 | 0.802124 | 6.509848e-49 | -8.615850e-47 |
| Msa1183630 | Msa1413570 | 0.813864 | 2.062991e-51 | -8.615850e-47 |
| Msa1213850 | Msa1413570 | 0.808905 | 2.461212e-50 | -8.615850e-47 |
| Msa0485220 | Msa1413570 | 0.825583 | 4.331407e-54 | -8.615850e-47 |
| Msa0511760 | Msa1413570 | 0.899655 | 1.597836e-77 | -8.615850e-47 |
| Msa0514130 | Msa1413570 | 0.846269 | 2.414382e-59 | -8.615850e-47 |
| Msa0516830 | Msa1413570 | 0.872804 | 2.400368e-67 | -8.615850e-47 |
| Msa0524340 | Msa1413570 | 0.819166 | 1.339575e-52 | -8.615850e-47 |
| Msa0547920 | Msa1413570 | 0.858741 | 6.691592e-63 | -8.615850e-47 |
| Msa0563540 | Msa1413570 | 0.813482 | 2.502569e-51 | -8.615850e-47 |
| Msa0573550 | Msa1413570 | 0.869115 | 3.943548e-66 | -8.615850e-47 |
| Msa0574780 | Msa1413570 | 0.887957 | 9.031664e-73 | -8.615850e-47 |
| Msa0578010 | Msa1413570 | 0.978645 | 2.927013e-146 | -8.615850e-47 |
| Msa0589160 | Msa1413570 | 0.833253 | 5.930629e-56 | -8.615850e-47 |
| Msa0597240 | Msa1413570 | 0.812958 | 3.262212e-51 | -8.615850e-47 |
| Msa0864660 | Msa1413570 | 0.800692 | 1.279103e-48 | -8.615850e-47 |
| Msa0902730 | Msa1413570 | 0.830140 | 3.473526e-55 | -8.615850e-47 |
| Msa0929700 | Msa1413570 | 0.850500 | 1.631380e-60 | -8.615850e-47 |
| Msa0930100 | Msa1413570 | 0.834221 | 3.396643e-56 | -8.615850e-47 |
| Msa0930360 | Msa1413570 | 0.917569 | 4.527911e-86 | -8.615850e-47 |
| Msa0930790 | Msa1413570 | 0.912980 | 1.044411e-83 | -8.615850e-47 |
| Msa0930890 | Msa1413570 | 0.823981 | 1.033621e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1413570 | MtrunA17_Chr8g0377301 | 98.844 | 173 | 2 | 0 | 25 | 197 | 1 | 173 | 2.84e-128 | 358 |
| Msa1413570 | MtrunA17_Chr3g0122641 | 95.954 | 173 | 7 | 0 | 25 | 197 | 1 | 173 | 5.03e-126 | 352 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1413570 | AT1G27400.1 | 87.861 | 173 | 21 | 0 | 25 | 197 | 1 | 173 | 4.87e-114 | 322 |
| Msa1413570 | AT1G67430.1 | 87.283 | 173 | 22 | 0 | 25 | 197 | 1 | 173 | 1.12e-113 | 321 |
| Msa1413570 | AT1G67430.2 | 64.162 | 173 | 18 | 1 | 25 | 197 | 1 | 129 | 6.10e-71 | 211 |
Find 66 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTAGAGTGTCTATTCT+TGG | 0.210303 | tig0024035:-38006 | None:intergenic |
| TCTTCTTGCTTGCTGCCAAC+TGG | 0.224595 | tig0024035:-38578 | None:intergenic |
| TTACACTTGGTAGGGTTATC+AGG | 0.253880 | tig0024035:-34715 | None:intergenic |
| ATCATTAAATAGATATTTCT+TGG | 0.256668 | tig0024035:+38814 | Msa1413570:three_prime_UTR |
| TATTGCTGCCTTGTACTCTT+AGG | 0.257568 | tig0024035:+38623 | Msa1413570:three_prime_UTR |
| GCCCTCTATCGTTTATTTGC+AGG | 0.259687 | tig0024035:+34542 | Msa1413570:CDS |
| TGCCCTTGACCAAGGCTAAA+AGG | 0.311470 | tig0024035:+37904 | Msa1413570:CDS |
| TATAAAATAGAACATAGTTT+TGG | 0.317872 | tig0024035:-38698 | None:intergenic |
| TAGAGTGTCTATTCTTGGCC+TGG | 0.328430 | tig0024035:-38001 | None:intergenic |
| ACCATGACGACGGCGTTTGA+TGG | 0.349011 | tig0024035:-34567 | None:intergenic |
| GACGTTTCTGTCGTGGTGTT+GGG | 0.366723 | tig0024035:+37970 | Msa1413570:CDS |
| TACTTTCTAGGTCAAAGGTT+TGG | 0.377018 | tig0024035:+38188 | Msa1413570:intron |
| CTTCTTGCTTGCTGCCAACT+GGG | 0.392921 | tig0024035:-38577 | None:intergenic |
| CTTGCTGCCAACTGGGACTC+CGG | 0.394551 | tig0024035:-38570 | None:intergenic |
| GCTTCTGTGCTTGATTGACT+TGG | 0.407265 | tig0024035:-38239 | None:intergenic |
| AGAGTGTCTATTCTTGGCCT+GGG | 0.411697 | tig0024035:-38000 | None:intergenic |
| AGACGTTTCTGTCGTGGTGT+TGG | 0.422500 | tig0024035:+37969 | Msa1413570:CDS |
| GGGAAACTGCCTTTGCCATC+AGG | 0.434248 | tig0024035:+37877 | Msa1413570:CDS |
| CAAGTCAGCGAAGTTTATCC+TGG | 0.440074 | tig0024035:+38046 | Msa1413570:CDS |
| AGACGTTCTTGCACACAAAC+AGG | 0.445626 | tig0024035:+37935 | Msa1413570:CDS |
| ATAAACTTCGCTGACTTGAC+TGG | 0.446611 | tig0024035:-38041 | None:intergenic |
| GAGGTCAGCACCACGAGCCT+TGG | 0.456110 | tig0024035:-34844 | None:intergenic |
| GTCAGCACCACGAGCCTTGG+TGG | 0.461811 | tig0024035:-34841 | None:intergenic |
| TGGTGTTGGGAGGACAGCCC+AGG | 0.463667 | tig0024035:+37983 | Msa1413570:CDS |
| GCCAAGAATAGACACTCTAA+TGG | 0.473513 | tig0024035:+38005 | Msa1413570:CDS |
| AATTGTACTTGCAGAACACT+AGG | 0.474152 | tig0024035:+37856 | Msa1413570:intron |
| AAGAAGAGGGCTTAAACTCT+AGG | 0.479337 | tig0024035:+38594 | Msa1413570:exon |
| CCATTCAGACGTTTCTGTCG+TGG | 0.491424 | tig0024035:+37963 | Msa1413570:CDS |
| TGACCTCAGAGTTCATTTCA+AGG | 0.493325 | tig0024035:+34860 | Msa1413570:CDS |
| CCACGACAGAAACGTCTGAA+TGG | 0.493513 | tig0024035:-37963 | None:intergenic |
| ATTACTACTTTCTAGGTCAA+AGG | 0.496618 | tig0024035:+38183 | Msa1413570:intron |
| TCCATCAAACGCCGTCGTCA+TGG | 0.500893 | tig0024035:+34566 | Msa1413570:CDS |
| GACCAAGGCTAAAAGGTACT+TGG | 0.501746 | tig0024035:+37911 | Msa1413570:CDS |
| AGAAGTTGCTTACACTTGGT+AGG | 0.508381 | tig0024035:-34724 | None:intergenic |
| AACGATAGAGGGCTGAGAGC+AGG | 0.508536 | tig0024035:-34532 | None:intergenic |
| AACCTGCAAATAAACGATAG+AGG | 0.523015 | tig0024035:-34544 | None:intergenic |
| ACATACGGTTGATTCTTCCA+TGG | 0.528331 | tig0024035:-38284 | None:intergenic |
| AATTGTCAAACATGATTCAC+CGG | 0.528999 | tig0024035:+38769 | Msa1413570:three_prime_UTR |
| CTGCATTCTTCAGCAAATCC+AGG | 0.531822 | tig0024035:-38064 | None:intergenic |
| GAAGTTGCTTACACTTGGTA+GGG | 0.534908 | tig0024035:-34723 | None:intergenic |
| GGAAGAGGCGGTTCAGAAAG+AGG | 0.535941 | tig0024035:+38447 | Msa1413570:CDS |
| ATTAAATAGATATTTCTTGG+TGG | 0.542034 | tig0024035:+38817 | Msa1413570:three_prime_UTR |
| CATACGGTTGATTCTTCCAT+GGG | 0.548316 | tig0024035:-38283 | None:intergenic |
| CGCAGAACATACAGAGCCCA+TGG | 0.557011 | tig0024035:+38267 | Msa1413570:CDS |
| GTTGGCAGCAAGCAAGAAGA+GGG | 0.565267 | tig0024035:+38581 | Msa1413570:CDS |
| ACCTGCAAATAAACGATAGA+GGG | 0.576091 | tig0024035:-34543 | None:intergenic |
| AGCAGGAATGAAGTGAGGTA+TGG | 0.580970 | tig0024035:-34515 | None:intergenic |
| GGGCAACTTCCTGATGGCAA+AGG | 0.587242 | tig0024035:-37886 | None:intergenic |
| GGTCAAGGGCAACTTCCTGA+TGG | 0.590928 | tig0024035:-37892 | None:intergenic |
| AGTTGGCAGCAAGCAAGAAG+AGG | 0.597913 | tig0024035:+38580 | Msa1413570:CDS |
| ATTGTACTTGCAGAACACTA+GGG | 0.598625 | tig0024035:+37857 | Msa1413570:intron |
| TGACAAGACCTAAGAGTACA+AGG | 0.608536 | tig0024035:-38631 | None:intergenic |
| GTTTCTGTCGTGGTGTTGGG+AGG | 0.609236 | tig0024035:+37973 | Msa1413570:CDS |
| AAAATCAACTCAATGTGGCA+AGG | 0.612514 | tig0024035:-38415 | None:intergenic |
| TTTCCAGCCGGAGTCCCAGT+TGG | 0.613767 | tig0024035:+38563 | Msa1413570:intron |
| TTTATCTGAAAAGGAAGAGG+CGG | 0.620263 | tig0024035:+38435 | Msa1413570:CDS |
| ACAGAAACGTCTGAATGGAA+TGG | 0.621533 | tig0024035:-37958 | None:intergenic |
| CAGATAAAATCAACTCAATG+TGG | 0.623662 | tig0024035:-38420 | None:intergenic |
| CAGGAAGTTGCCCTTGACCA+AGG | 0.624452 | tig0024035:+37896 | Msa1413570:CDS |
| CATGCAGCCACCAAGGCTCG+TGG | 0.636269 | tig0024035:+34834 | Msa1413570:intron |
| GACACTCTAATGGACAAGGA+AGG | 0.649233 | tig0024035:+38015 | Msa1413570:CDS |
| TTACCTTGAAATGAACTCTG+AGG | 0.651324 | tig0024035:-34863 | None:intergenic |
| ACTCTAATGGACAAGGAAGG+TGG | 0.651493 | tig0024035:+38018 | Msa1413570:CDS |
| CTGAGAGCAGGAATGAAGTG+AGG | 0.665047 | tig0024035:-34520 | None:intergenic |
| AATAGACACTCTAATGGACA+AGG | 0.667364 | tig0024035:+38011 | Msa1413570:CDS |
| TTCAATACTTACCATGACGA+CGG | 0.679696 | tig0024035:-34577 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTTTTTTTATA+AGG | + | tig0024035:35141-35160 | Msa1413570:intron | 0.0% |
| !! | TATATTAATTGAAATGAATA+AGG | - | tig0024035:36047-36066 | None:intergenic | 10.0% |
| !!! | TGTTTTATTATTATAGATTA+TGG | + | tig0024035:36866-36885 | Msa1413570:intron | 10.0% |
| !! | ATCATTAATAAAACATAATT+GGG | - | tig0024035:37761-37780 | None:intergenic | 10.0% |
| !! | AATCATTAATAAAACATAAT+TGG | - | tig0024035:37762-37781 | None:intergenic | 10.0% |
| !! | TTCATAAAAAAATCATATAA+AGG | - | tig0024035:37817-37836 | None:intergenic | 10.0% |
| !!! | TTTTTATAAGGTAATAGATA+AGG | + | tig0024035:35153-35172 | Msa1413570:intron | 15.0% |
| !!! | ATTTAGTTTATAGATGAAAA+AGG | + | tig0024035:36904-36923 | Msa1413570:intron | 15.0% |
| !!! | TAATAACCATGATTTTTTTA+AGG | + | tig0024035:36976-36995 | Msa1413570:intron | 15.0% |
| !!! | ATATAAAACTCATTGTTATT+GGG | + | tig0024035:37172-37191 | Msa1413570:intron | 15.0% |
| !! | TATATAATCAAGTAATAATG+AGG | - | tig0024035:37413-37432 | None:intergenic | 15.0% |
| !!! | CAACTTGTATTTTTAATTAA+AGG | + | tig0024035:37650-37669 | Msa1413570:intron | 15.0% |
| !! | TATTGCTTATTTAATTGTTT+CGG | + | tig0024035:38498-38517 | Msa1413570:intron | 15.0% |
| !!! | TATAAAATAGAACATAGTTT+TGG | - | tig0024035:38701-38720 | None:intergenic | 15.0% |
| !!! | TCTATTTAATGATTTTATCA+CGG | - | tig0024035:38807-38826 | None:intergenic | 15.0% |
| !! | ATCATTAAATAGATATTTCT+TGG | + | tig0024035:38814-38833 | Msa1413570:three_prime_UTR | 15.0% |
| !!! | TGTTTGTTTTTCGAATTTTT+AGG | + | tig0024035:34675-34694 | Msa1413570:intron | 20.0% |
| !!! | TTTTGTGTTTTAAGCATAAT+TGG | + | tig0024035:34756-34775 | Msa1413570:intron | 20.0% |
| !! | TACAACAAAAAATGAGTATT+AGG | - | tig0024035:34967-34986 | None:intergenic | 20.0% |
| !! | AGAAATGTAGTTTGAAAATT+TGG | + | tig0024035:35278-35297 | Msa1413570:intron | 20.0% |
| !!! | TAAAACTTTTCTATGTAATG+GGG | - | tig0024035:35499-35518 | None:intergenic | 20.0% |
| !!! | CTAAAACTTTTCTATGTAAT+GGG | - | tig0024035:35500-35519 | None:intergenic | 20.0% |
| !!! | ACTAAAACTTTTCTATGTAA+TGG | - | tig0024035:35501-35520 | None:intergenic | 20.0% |
| !! | TACTAATTATTGATCATTGA+TGG | + | tig0024035:35943-35962 | Msa1413570:intron | 20.0% |
| !! | ATGAAGTTAATTGATATACT+TGG | + | tig0024035:36069-36088 | Msa1413570:intron | 20.0% |
| !!! | ATATAAAACCCATTGTTATT+GGG | + | tig0024035:36166-36185 | Msa1413570:intron | 20.0% |
| !! | GAAACCTATAATCATAAAAA+GGG | - | tig0024035:36367-36386 | None:intergenic | 20.0% |
| !! | TGAAACCTATAATCATAAAA+AGG | - | tig0024035:36368-36387 | None:intergenic | 20.0% |
| !! | ATGATTATAGGTTTCATAAA+TGG | + | tig0024035:36372-36391 | Msa1413570:intron | 20.0% |
| !!! | ATATATAACCCATTGTTATT+GGG | + | tig0024035:36775-36794 | Msa1413570:intron | 20.0% |
| !! | AGAACCTTAAATCATAAAAA+GGG | - | tig0024035:37011-37030 | None:intergenic | 20.0% |
| !! | GATATAAAACTCATTGTTAT+TGG | + | tig0024035:37171-37190 | Msa1413570:intron | 20.0% |
| !! | TACTTGATTATATAAGACAT+AGG | + | tig0024035:37419-37438 | Msa1413570:intron | 20.0% |
| !!! | ATCATAAGATTTGAAACATA+CGG | - | tig0024035:38302-38321 | None:intergenic | 20.0% |
| !!! | GTTCTATTTTATACTGAATT+TGG | + | tig0024035:38708-38727 | Msa1413570:three_prime_UTR | 20.0% |
| !! | ATTAAATAGATATTTCTTGG+TGG | + | tig0024035:38817-38836 | Msa1413570:three_prime_UTR | 20.0% |
| ! | AAGCTAAAAACAAGTTTGTA+AGG | + | tig0024035:35049-35068 | Msa1413570:intron | 25.0% |
| !! | TAGTCATTGTCAATTTTGTT+GGG | + | tig0024035:35196-35215 | Msa1413570:intron | 25.0% |
| ! | ATGTAGTTTGAAAATTTGGA+AGG | + | tig0024035:35282-35301 | Msa1413570:intron | 25.0% |
| ! | TTGAAAATTTGGAAGGAAAA+AGG | + | tig0024035:35289-35308 | Msa1413570:intron | 25.0% |
| !! | ATGTTATTTGAAAGACAAAC+TGG | - | tig0024035:35636-35655 | None:intergenic | 25.0% |
| !!! | GGTTTTCTCTATATTTTAAC+TGG | - | tig0024035:35723-35742 | None:intergenic | 25.0% |
| ! | TGAACCTTAAATCATTACAT+GGG | - | tig0024035:35873-35892 | None:intergenic | 25.0% |
| !! | ATTTAAGGTTCACTAAATGA+GGG | + | tig0024035:35881-35900 | Msa1413570:intron | 25.0% |
| ! | CCAAACAATCTAAGTAATAA+GGG | - | tig0024035:36012-36031 | None:intergenic | 25.0% |
| ! | ACCAAACAATCTAAGTAATA+AGG | - | tig0024035:36013-36032 | None:intergenic | 25.0% |
| ! | GATATAAAACCCATTGTTAT+TGG | + | tig0024035:36165-36184 | Msa1413570:intron | 25.0% |
| !! | AGTTCCCTTTTTATGATTAT+AGG | + | tig0024035:36360-36379 | Msa1413570:intron | 25.0% |
| ! | GATATATAACCCATTGTTAT+TGG | + | tig0024035:36774-36793 | Msa1413570:intron | 25.0% |
| ! | TAGTTTATAGATGAAAAAGG+CGG | + | tig0024035:36907-36926 | Msa1413570:intron | 25.0% |
| ! | CAGAACCTTAAATCATAAAA+AGG | - | tig0024035:37012-37031 | None:intergenic | 25.0% |
| !! | TTTTATATCCCTGAATGTTA+CGG | - | tig0024035:37160-37179 | None:intergenic | 25.0% |
| ! | ATGTAATATTGAACTGGAAA+AGG | - | tig0024035:37460-37479 | None:intergenic | 25.0% |
| !! | TTTTCCAGTTCAATATTACA+TGG | + | tig0024035:37459-37478 | Msa1413570:intron | 25.0% |
| !! | TTTTCCATGTAATATTGAAC+TGG | - | tig0024035:37466-37485 | None:intergenic | 25.0% |
| ! | CTCTCTAAACAATTATTGTT+TGG | + | tig0024035:37713-37732 | Msa1413570:intron | 25.0% |
| ! | AACGTTAATTACTACTTTCT+AGG | + | tig0024035:38176-38195 | Msa1413570:intron | 25.0% |
| !!! | TGTGTTTTTTTTTGAAAGTG+TGG | + | tig0024035:38345-38364 | Msa1413570:intron | 25.0% |
| !!! | TGAGTTGATTTTATCTGAAA+AGG | + | tig0024035:38426-38445 | Msa1413570:CDS | 25.0% |
| TTAGGTAACACAAATTGAAC+TGG | - | tig0024035:34949-34968 | None:intergenic | 30.0% | |
| GAACTTATGTATTTCTCTGA+TGG | + | tig0024035:35012-35031 | Msa1413570:intron | 30.0% | |
| ATAAGGCACATGATATCAAA+CGG | + | tig0024035:35170-35189 | Msa1413570:intron | 30.0% | |
| CAACAAAATTGACAATGACT+AGG | - | tig0024035:35197-35216 | None:intergenic | 30.0% | |
| ! | CTAGTCATTGTCAATTTTGT+TGG | + | tig0024035:35195-35214 | Msa1413570:intron | 30.0% |
| ACAATAGATGTAGTGAAACT+TGG | + | tig0024035:35540-35559 | Msa1413570:intron | 30.0% | |
| !! | TTGTTGTTTATGTTGTACTG+AGG | + | tig0024035:35606-35625 | Msa1413570:intron | 30.0% |
| GAAACTAGTGTCTAATAGAT+GGG | - | tig0024035:35744-35763 | None:intergenic | 30.0% | |
| ! | CATCTATTAGACACTAGTTT+CGG | + | tig0024035:35743-35762 | Msa1413570:intron | 30.0% |
| ! | TTTTCATAGGGTTATCTATC+AGG | - | tig0024035:35773-35792 | None:intergenic | 30.0% |
| ! | AGATAATAGCCATGGTTTTT+GGG | + | tig0024035:35835-35854 | Msa1413570:intron | 30.0% |
| AACTCCCATGTAATGATTTA+AGG | + | tig0024035:35866-35885 | Msa1413570:intron | 30.0% | |
| GTGAACCTTAAATCATTACA+TGG | - | tig0024035:35874-35893 | None:intergenic | 30.0% | |
| ! | GATTTAAGGTTCACTAAATG+AGG | + | tig0024035:35880-35899 | Msa1413570:intron | 30.0% |
| TGTTTCATTTAGCATCTTAG+TGG | + | tig0024035:35971-35990 | Msa1413570:intron | 30.0% | |
| CCCTTATTACTTAGATTGTT+TGG | + | tig0024035:36009-36028 | Msa1413570:intron | 30.0% | |
| ! | TTTTATATCCCTGAAGGTTA+CGG | - | tig0024035:36154-36173 | None:intergenic | 30.0% |
| AATGTACCTCGTTAAATTCA+GGG | + | tig0024035:36333-36352 | Msa1413570:intron | 30.0% | |
| ACCTCATTACTTAGATTGTT+TGG | + | tig0024035:36512-36531 | Msa1413570:intron | 30.0% | |
| ACCAAACAATCTAAGTAATG+AGG | - | tig0024035:36516-36535 | None:intergenic | 30.0% | |
| ACCTCATTACTTAGATTGTT+TGG | + | tig0024035:36512-36531 | Msa1413570:intron | 30.0% | |
| ACCAAACAATCTAAGTAATG+AGG | - | tig0024035:36516-36535 | None:intergenic | 30.0% | |
| TTGAAAAAAAAGCAGTGGTT+TGG | + | tig0024035:36717-36736 | Msa1413570:intron | 30.0% | |
| TTATATATCCCTGAAGGTTA+CGG | - | tig0024035:36763-36782 | None:intergenic | 30.0% | |
| GGTTCACCTTAAAAAAATCA+TGG | - | tig0024035:36985-37004 | None:intergenic | 30.0% | |
| CTTAAATCATAAAAAGGGAG+AGG | - | tig0024035:37006-37025 | None:intergenic | 30.0% | |
| ! | CTCTCCCTTTTTATGATTTA+AGG | + | tig0024035:37004-37023 | Msa1413570:intron | 30.0% |
| TTTATATCCCTGAATGTTAC+GGG | - | tig0024035:37159-37178 | None:intergenic | 30.0% | |
| ! | TGATATGTGTTGACATGTAT+TGG | + | tig0024035:37313-37332 | Msa1413570:intron | 30.0% |
| ATTACATGGAAAAGACGTAT+AGG | + | tig0024035:37473-37492 | Msa1413570:intron | 30.0% | |
| TCCTGATGTAAAAAGAAAAC+AGG | + | tig0024035:37506-37525 | Msa1413570:intron | 30.0% | |
| ! | ACCTGTTTTCTTTTTACATC+AGG | - | tig0024035:37510-37529 | None:intergenic | 30.0% |
| ATTACTACTTTCTAGGTCAA+AGG | + | tig0024035:38183-38202 | Msa1413570:intron | 30.0% | |
| CAGATAAAATCAACTCAATG+TGG | - | tig0024035:38423-38442 | None:intergenic | 30.0% | |
| ! | GATTTTATCTGAAAAGGAAG+AGG | + | tig0024035:38432-38451 | Msa1413570:CDS | 30.0% |
| ! | TAATTGTTTCGGCAAGATTT+TGG | + | tig0024035:38509-38528 | Msa1413570:intron | 30.0% |
| !!! | ATTCTGATATTTTTTCCAGC+CGG | + | tig0024035:38551-38570 | Msa1413570:intron | 30.0% |
| AATTGTCAAACATGATTCAC+CGG | + | tig0024035:38769-38788 | Msa1413570:three_prime_UTR | 30.0% | |
| ACCTGCAAATAAACGATAGA+GGG | - | tig0024035:34546-34565 | None:intergenic | 35.0% | |
| AACCTGCAAATAAACGATAG+AGG | - | tig0024035:34547-34566 | None:intergenic | 35.0% | |
| TTCAATACTTACCATGACGA+CGG | - | tig0024035:34580-34599 | None:intergenic | 35.0% | |
| TTACAGAAGTTGCTTACACT+TGG | - | tig0024035:34731-34750 | None:intergenic | 35.0% | |
| TTACCTTGAAATGAACTCTG+AGG | - | tig0024035:34866-34885 | None:intergenic | 35.0% | |
| AAATTTGGAAGGAAAAAGGC+TGG | + | tig0024035:35293-35312 | Msa1413570:intron | 35.0% | |
| AATTTGGAAGGAAAAAGGCT+GGG | + | tig0024035:35294-35313 | Msa1413570:intron | 35.0% | |
| CATGGTAACATATGTTCACA+TGG | - | tig0024035:35328-35347 | None:intergenic | 35.0% | |
| ! | TTACAAAAGGCATGTTCACA+TGG | - | tig0024035:35346-35365 | None:intergenic | 35.0% |
| GCATGTTCACATGTTACAAA+AGG | - | tig0024035:35359-35378 | None:intergenic | 35.0% | |
| CGAAACTAGTGTCTAATAGA+TGG | - | tig0024035:35745-35764 | None:intergenic | 35.0% | |
| TGAACCTGTCGTTAAAATCA+GGG | + | tig0024035:35812-35831 | Msa1413570:intron | 35.0% | |
| ! | GAGATAATAGCCATGGTTTT+TGG | + | tig0024035:35834-35853 | Msa1413570:intron | 35.0% |
| AAATCATTACATGGGAGTTG+AGG | - | tig0024035:35865-35884 | None:intergenic | 35.0% | |
| AACCTGATTGAAAAAAGCAG+TGG | + | tig0024035:36103-36122 | Msa1413570:intron | 35.0% | |
| TTTATATCCCTGAAGGTTAC+GGG | - | tig0024035:36153-36172 | None:intergenic | 35.0% | |
| !! | AATGGGTTTTATATCCCTGA+AGG | - | tig0024035:36160-36179 | None:intergenic | 35.0% |
| TAGGTTCACCCAATAACAAT+GGG | - | tig0024035:36177-36196 | None:intergenic | 35.0% | |
| ATAGGTTCACCCAATAACAA+TGG | - | tig0024035:36178-36197 | None:intergenic | 35.0% | |
| GTATCACAAAGACAAGACAT+AGG | - | tig0024035:36196-36215 | None:intergenic | 35.0% | |
| GAATGTACCTCGTTAAATTC+AGG | + | tig0024035:36332-36351 | Msa1413570:intron | 35.0% | |
| !!! | CCACTGCTTTTTTTTCAATC+AGG | - | tig0024035:36715-36734 | None:intergenic | 35.0% |
| CCTGATTGAAAAAAAAGCAG+TGG | + | tig0024035:36712-36731 | Msa1413570:intron | 35.0% | |
| TATATATCCCTGAAGGTTAC+GGG | - | tig0024035:36762-36781 | None:intergenic | 35.0% | |
| !! | AATGGGTTATATATCCCTGA+AGG | - | tig0024035:36769-36788 | None:intergenic | 35.0% |
| TTTATAGATGAAAAAGGCGG+TGG | + | tig0024035:36910-36929 | Msa1413570:intron | 35.0% | |
| AACCTGATTGAAAAAAGCAG+TGG | + | tig0024035:36103-36122 | Msa1413570:intron | 35.0% | |
| GTATCACAAAGACAAGACAT+AGG | - | tig0024035:36196-36215 | None:intergenic | 35.0% | |
| TCTTTGTGATACGTGATTGA+AGG | + | tig0024035:37210-37229 | Msa1413570:intron | 35.0% | |
| ATTGAAGGTTCAGTAAACGA+TGG | + | tig0024035:37225-37244 | Msa1413570:intron | 35.0% | |
| TGATTTAGCCACCTTCTTAA+TGG | + | tig0024035:37370-37389 | Msa1413570:intron | 35.0% | |
| AGTAGCAGTAGCTTAATTGT+AGG | - | tig0024035:37789-37808 | None:intergenic | 35.0% | |
| AATTGTACTTGCAGAACACT+AGG | + | tig0024035:37856-37875 | Msa1413570:intron | 35.0% | |
| ATTGTACTTGCAGAACACTA+GGG | + | tig0024035:37857-37876 | Msa1413570:intron | 35.0% | |
| ! | TCCATTAGAGTGTCTATTCT+TGG | - | tig0024035:38009-38028 | None:intergenic | 35.0% |
| ! | AATAGACACTCTAATGGACA+AGG | + | tig0024035:38011-38030 | Msa1413570:CDS | 35.0% |
| TACTTTCTAGGTCAAAGGTT+TGG | + | tig0024035:38188-38207 | Msa1413570:intron | 35.0% | |
| AAAATCAACTCAATGTGGCA+AGG | - | tig0024035:38418-38437 | None:intergenic | 35.0% | |
| TTTATCTGAAAAGGAAGAGG+CGG | + | tig0024035:38435-38454 | Msa1413570:CDS | 35.0% | |
| ! | ATCACGGTTTTTGTAAACTC+CGG | - | tig0024035:38791-38810 | None:intergenic | 35.0% |
| TTACACTTGGTAGGGTTATC+AGG | - | tig0024035:34718-34737 | None:intergenic | 40.0% | |
| GAAGTTGCTTACACTTGGTA+GGG | - | tig0024035:34726-34745 | None:intergenic | 40.0% | |
| AGAAGTTGCTTACACTTGGT+AGG | - | tig0024035:34727-34746 | None:intergenic | 40.0% | |
| !!! | TTTTTTACATGCAGCCACCA+AGG | + | tig0024035:34827-34846 | Msa1413570:intron | 40.0% |
| TGACCTCAGAGTTCATTTCA+AGG | + | tig0024035:34860-34879 | Msa1413570:CDS | 40.0% | |
| ATTTGGAAGGAAAAAGGCTG+GGG | + | tig0024035:35295-35314 | Msa1413570:intron | 40.0% | |
| ACGAATCACAAACAGAGACT+CGG | - | tig0024035:35454-35473 | None:intergenic | 40.0% | |
| !! | ACAGGCAACTGCTTTTCATA+GGG | - | tig0024035:35785-35804 | None:intergenic | 40.0% |
| !! | AACAGGCAACTGCTTTTCAT+AGG | - | tig0024035:35786-35805 | None:intergenic | 40.0% |
| CGACAGGTTCACAAAATAAC+AGG | - | tig0024035:35803-35822 | None:intergenic | 40.0% | |
| GTGAACCTGTCGTTAAAATC+AGG | + | tig0024035:35811-35830 | Msa1413570:intron | 40.0% | |
| !! | ATCTCCCTGATTTTAACGAC+AGG | - | tig0024035:35819-35838 | None:intergenic | 40.0% |
| AATCAGGGAGATAATAGCCA+TGG | + | tig0024035:35827-35846 | Msa1413570:intron | 40.0% | |
| ! | GAGGGTACATTTCGTACATA+TGG | + | tig0024035:35899-35918 | Msa1413570:intron | 40.0% |
| TCTAAGTAATAAGGGTAGCC+AGG | - | tig0024035:36004-36023 | None:intergenic | 40.0% | |
| !!! | GACCACTGCTTTTTTCAATC+AGG | - | tig0024035:36108-36127 | None:intergenic | 40.0% |
| GATTGAAAAAAGCAGTGGTC+TGG | + | tig0024035:36108-36127 | Msa1413570:intron | 40.0% | |
| TCTTTGTGATACGTGACTGA+AGG | + | tig0024035:36204-36223 | Msa1413570:intron | 40.0% | |
| ACTGAAGGTTCAGTAAACGA+TGG | + | tig0024035:36219-36238 | Msa1413570:intron | 40.0% | |
| CTATCTCCCTGAATTTAACG+AGG | - | tig0024035:36342-36361 | None:intergenic | 40.0% | |
| ! | TCTAAGTAATGAGGTTAGCC+AGG | - | tig0024035:36507-36526 | None:intergenic | 40.0% |
| ! | TCTAAGTAATGAGGTTAGCC+AGG | - | tig0024035:36507-36526 | None:intergenic | 40.0% |
| GAGGTTCACCCAATAACAAT+GGG | - | tig0024035:36786-36805 | None:intergenic | 40.0% | |
| AGAGGTTCACCCAATAACAA+TGG | - | tig0024035:36787-36806 | None:intergenic | 40.0% | |
| GTATCACAAAGACAAGACAG+AGG | - | tig0024035:36805-36824 | None:intergenic | 40.0% | |
| TCTTTGTGATACGTGACTGA+AGG | + | tig0024035:36204-36223 | Msa1413570:intron | 40.0% | |
| !! | GTGGTTTGTTGTCTTGTGAA+TGG | + | tig0024035:36929-36948 | Msa1413570:intron | 40.0% |
| TCTCCCTGAGTTTAACAAGA+GGG | - | tig0024035:36956-36975 | None:intergenic | 40.0% | |
| ATCTCCCTGAGTTTAACAAG+AGG | - | tig0024035:36957-36976 | None:intergenic | 40.0% | |
| CAGGTTGTTGCATGACTATA+GGG | - | tig0024035:37095-37114 | None:intergenic | 40.0% | |
| ! | TCAGGTTGTTGCATGACTAT+AGG | - | tig0024035:37096-37115 | None:intergenic | 40.0% |
| !!! | GACCACTGCTTTTTTCAATC+AGG | - | tig0024035:36108-36127 | None:intergenic | 40.0% |
| GATTGAAAAAAGCAGTGGTC+TGG | + | tig0024035:36108-36127 | Msa1413570:intron | 40.0% | |
| AAGCAACTAGGCCATTAAGA+AGG | - | tig0024035:37384-37403 | None:intergenic | 40.0% | |
| ATGAGGCAAATCAAGCAACT+AGG | - | tig0024035:37396-37415 | None:intergenic | 40.0% | |
| ATATCACAGACATTTCCGAG+AGG | - | tig0024035:37556-37575 | None:intergenic | 40.0% | |
| !!! | TACCTTTTAGCCTTGGTCAA+GGG | - | tig0024035:37909-37928 | None:intergenic | 40.0% |
| ! | TTCCAAGTACCTTTTAGCCT+TGG | - | tig0024035:37916-37935 | None:intergenic | 40.0% |
| ACAGAAACGTCTGAATGGAA+TGG | - | tig0024035:37961-37980 | None:intergenic | 40.0% | |
| GCCAAGAATAGACACTCTAA+TGG | + | tig0024035:38005-38024 | Msa1413570:CDS | 40.0% | |
| !! | ATAAACTTCGCTGACTTGAC+TGG | - | tig0024035:38044-38063 | None:intergenic | 40.0% |
| ! | CATACGGTTGATTCTTCCAT+GGG | - | tig0024035:38286-38305 | None:intergenic | 40.0% |
| ! | ACATACGGTTGATTCTTCCA+TGG | - | tig0024035:38287-38306 | None:intergenic | 40.0% |
| AAGAAGAGGGCTTAAACTCT+AGG | + | tig0024035:38594-38613 | Msa1413570:exon | 40.0% | |
| TATTGCTGCCTTGTACTCTT+AGG | + | tig0024035:38623-38642 | Msa1413570:three_prime_UTR | 40.0% | |
| ! | TGACAAGACCTAAGAGTACA+AGG | - | tig0024035:38634-38653 | None:intergenic | 40.0% |
| AGCAGGAATGAAGTGAGGTA+TGG | - | tig0024035:34518-34537 | None:intergenic | 45.0% | |
| GCCCTCTATCGTTTATTTGC+AGG | + | tig0024035:34542-34561 | Msa1413570:CDS | 45.0% | |
| GGCTAACTTAAACAACAGCG+AGG | - | tig0024035:35433-35452 | None:intergenic | 45.0% | |
| TGAGGTTCTCCCAAAAACCA+TGG | - | tig0024035:35847-35866 | None:intergenic | 45.0% | |
| CATCTTAGTGGCATAGTTCC+TGG | + | tig0024035:35983-36002 | Msa1413570:intron | 45.0% | |
| ! | TGTTTCAAGTAGCCTCCTAG+TGG | + | tig0024035:36474-36493 | Msa1413570:intron | 45.0% |
| !! | TACGGGTGGACTGTTCATAT+AGG | - | tig0024035:36745-36764 | None:intergenic | 45.0% |
| TGGACCCTCTTGTTAAACTC+AGG | + | tig0024035:36949-36968 | Msa1413570:intron | 45.0% | |
| GGACCCTCTTGTTAAACTCA+GGG | + | tig0024035:36950-36969 | Msa1413570:intron | 45.0% | |
| ATATCCCTGAATGTTACGGG+TGG | - | tig0024035:37156-37175 | None:intergenic | 45.0% | |
| CAACTAGGCCATTAAGAAGG+TGG | - | tig0024035:37381-37400 | None:intergenic | 45.0% | |
| TCTATATCGAGCAGTCCTCT+CGG | + | tig0024035:37538-37557 | Msa1413570:intron | 45.0% | |
| !!! | GTACCTTTTAGCCTTGGTCA+AGG | - | tig0024035:37910-37929 | None:intergenic | 45.0% |
| !! | GACCAAGGCTAAAAGGTACT+TGG | + | tig0024035:37911-37930 | Msa1413570:CDS | 45.0% |
| AGACGTTCTTGCACACAAAC+AGG | + | tig0024035:37935-37954 | Msa1413570:CDS | 45.0% | |
| ! | AGAGTGTCTATTCTTGGCCT+GGG | - | tig0024035:38003-38022 | None:intergenic | 45.0% |
| ! | TAGAGTGTCTATTCTTGGCC+TGG | - | tig0024035:38004-38023 | None:intergenic | 45.0% |
| ! | GACACTCTAATGGACAAGGA+AGG | + | tig0024035:38015-38034 | Msa1413570:CDS | 45.0% |
| ! | ACTCTAATGGACAAGGAAGG+TGG | + | tig0024035:38018-38037 | Msa1413570:CDS | 45.0% |
| CAAGTCAGCGAAGTTTATCC+TGG | + | tig0024035:38046-38065 | Msa1413570:CDS | 45.0% | |
| CTGCATTCTTCAGCAAATCC+AGG | - | tig0024035:38067-38086 | None:intergenic | 45.0% | |
| GCTTCTGTGCTTGATTGACT+TGG | - | tig0024035:38242-38261 | None:intergenic | 45.0% | |
| !! | TAATTAATAATTGATATATT+TGG | + | tig0024035:36676-36695 | Msa1413570:intron | 5.0% |
| CTGAGAGCAGGAATGAAGTG+AGG | - | tig0024035:34523-34542 | None:intergenic | 50.0% | |
| !! | TACGGGTGGACTGCTCATAT+AGG | - | tig0024035:36136-36155 | None:intergenic | 50.0% |
| ATATCCCTGAAGGTTACGGG+TGG | - | tig0024035:36150-36169 | None:intergenic | 50.0% | |
| TAGCCAGGAACTATGCCACT+AGG | - | tig0024035:35989-36008 | None:intergenic | 50.0% | |
| ! | GAGTGTTTCAAGTAGCCTCC+TGG | + | tig0024035:36471-36490 | Msa1413570:intron | 50.0% |
| ! | TGTTTCAAGTAGCCTCCTGG+TGG | + | tig0024035:36576-36595 | Msa1413570:intron | 50.0% |
| ATATCCCTGAAGGTTACGGG+TGG | - | tig0024035:36150-36169 | None:intergenic | 50.0% | |
| TGCCCTTGACCAAGGCTAAA+AGG | + | tig0024035:37904-37923 | Msa1413570:CDS | 50.0% | |
| CCACGACAGAAACGTCTGAA+TGG | - | tig0024035:37966-37985 | None:intergenic | 50.0% | |
| CCATTCAGACGTTTCTGTCG+TGG | + | tig0024035:37963-37982 | Msa1413570:CDS | 50.0% | |
| AGACGTTTCTGTCGTGGTGT+TGG | + | tig0024035:37969-37988 | Msa1413570:CDS | 50.0% | |
| GACGTTTCTGTCGTGGTGTT+GGG | + | tig0024035:37970-37989 | Msa1413570:CDS | 50.0% | |
| ! | GGCGGTTCAGAAAGAGGTAT+TGG | + | tig0024035:38453-38472 | Msa1413570:intron | 50.0% |
| ! | CTTCTTGCTTGCTGCCAACT+GGG | - | tig0024035:38580-38599 | None:intergenic | 50.0% |
| ! | TCTTCTTGCTTGCTGCCAAC+TGG | - | tig0024035:38581-38600 | None:intergenic | 50.0% |
| AGTTGGCAGCAAGCAAGAAG+AGG | + | tig0024035:38580-38599 | Msa1413570:CDS | 50.0% | |
| GTTGGCAGCAAGCAAGAAGA+GGG | + | tig0024035:38581-38600 | Msa1413570:CDS | 50.0% | |
| AACGATAGAGGGCTGAGAGC+AGG | - | tig0024035:34535-34554 | None:intergenic | 55.0% | |
| TCCATCAAACGCCGTCGTCA+TGG | + | tig0024035:34566-34585 | Msa1413570:CDS | 55.0% | |
| ACCATGACGACGGCGTTTGA+TGG | - | tig0024035:34570-34589 | None:intergenic | 55.0% | |
| CAGTCCACCCGTAACCTTCA+GGG | + | tig0024035:36143-36162 | Msa1413570:intron | 55.0% | |
| CCAGGAACTATGCCACTAGG+AGG | - | tig0024035:36489-36508 | None:intergenic | 55.0% | |
| CCTCCTAGTGGCATAGTTCC+TGG | + | tig0024035:36486-36505 | Msa1413570:intron | 55.0% | |
| ACAGTCCACCCGTAACCTTC+AGG | + | tig0024035:36751-36770 | Msa1413570:intron | 55.0% | |
| CAGTCCACCCGTAACCTTCA+GGG | + | tig0024035:36143-36162 | Msa1413570:intron | 55.0% | |
| TACGGGTGGACGGCTCATAT+AGG | - | tig0024035:37142-37161 | None:intergenic | 55.0% | |
| CCCTGAATGTTACGGGTGGA+CGG | - | tig0024035:37152-37171 | None:intergenic | 55.0% | |
| CCGTCCACCCGTAACATTCA+GGG | + | tig0024035:37149-37168 | Msa1413570:intron | 55.0% | |
| GGGAAACTGCCTTTGCCATC+AGG | + | tig0024035:37877-37896 | Msa1413570:CDS | 55.0% | |
| GGGCAACTTCCTGATGGCAA+AGG | - | tig0024035:37889-37908 | None:intergenic | 55.0% | |
| GGTCAAGGGCAACTTCCTGA+TGG | - | tig0024035:37895-37914 | None:intergenic | 55.0% | |
| CAGGAAGTTGCCCTTGACCA+AGG | + | tig0024035:37896-37915 | Msa1413570:CDS | 55.0% | |
| ! | GTTTCTGTCGTGGTGTTGGG+AGG | + | tig0024035:37973-37992 | Msa1413570:CDS | 55.0% |
| CGCAGAACATACAGAGCCCA+TGG | + | tig0024035:38267-38286 | Msa1413570:CDS | 55.0% | |
| GGAAGAGGCGGTTCAGAAAG+AGG | + | tig0024035:38447-38466 | Msa1413570:CDS | 55.0% | |
| GCAGTCCACCCGTAACCTTC+AGG | + | tig0024035:36142-36161 | Msa1413570:intron | 60.0% | |
| TAGCCAGGAACTACGCCACC+AGG | - | tig0024035:36594-36613 | None:intergenic | 60.0% | |
| GCCGTCCACCCGTAACATTC+AGG | + | tig0024035:37148-37167 | Msa1413570:intron | 60.0% | |
| TTTCCAGCCGGAGTCCCAGT+TGG | + | tig0024035:38563-38582 | Msa1413570:intron | 60.0% | |
| CTTGCTGCCAACTGGGACTC+CGG | - | tig0024035:38573-38592 | None:intergenic | 60.0% | |
| CATGCAGCCACCAAGGCTCG+TGG | + | tig0024035:34834-34853 | Msa1413570:intron | 65.0% | |
| GTCAGCACCACGAGCCTTGG+TGG | - | tig0024035:34844-34863 | None:intergenic | 65.0% | |
| GAGGTCAGCACCACGAGCCT+TGG | - | tig0024035:34847-34866 | None:intergenic | 65.0% | |
| CCAGGAACTACGCCACCAGG+AGG | - | tig0024035:36591-36610 | None:intergenic | 65.0% | |
| ! | CCTCCTGGTGGCGTAGTTCC+TGG | + | tig0024035:36588-36607 | Msa1413570:intron | 65.0% |
| ! | TGGTGTTGGGAGGACAGCCC+AGG | + | tig0024035:37983-38002 | Msa1413570:CDS | 65.0% |
| CTGCCAACTGGGACTCCGGC+TGG | - | tig0024035:38569-38588 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024035 | gene | 34513 | 38854 | 34513 | ID=Msa1413570;Name=Msa1413570 |
| tig0024035 | mRNA | 34513 | 38854 | 34513 | ID=Msa1413570-mRNA-1;Parent=Msa1413570;Name=Msa1413570-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|1|0.85|1|1|1|7|246|197 |
| tig0024035 | exon | 34513 | 34587 | 34513 | ID=Msa1413570-mRNA-1:exon:21248;Parent=Msa1413570-mRNA-1 |
| tig0024035 | exon | 34697 | 34733 | 34697 | ID=Msa1413570-mRNA-1:exon:21249;Parent=Msa1413570-mRNA-1 |
| tig0024035 | exon | 34841 | 34881 | 34841 | ID=Msa1413570-mRNA-1:exon:21250;Parent=Msa1413570-mRNA-1 |
| tig0024035 | exon | 37870 | 38100 | 37870 | ID=Msa1413570-mRNA-1:exon:21251;Parent=Msa1413570-mRNA-1 |
| tig0024035 | exon | 38198 | 38300 | 38198 | ID=Msa1413570-mRNA-1:exon:21252;Parent=Msa1413570-mRNA-1 |
| tig0024035 | exon | 38401 | 38468 | 38401 | ID=Msa1413570-mRNA-1:exon:21253;Parent=Msa1413570-mRNA-1 |
| tig0024035 | exon | 38570 | 38854 | 38570 | ID=Msa1413570-mRNA-1:exon:21254;Parent=Msa1413570-mRNA-1 |
| tig0024035 | CDS | 34513 | 34587 | 34513 | ID=Msa1413570-mRNA-1:cds;Parent=Msa1413570-mRNA-1 |
| tig0024035 | CDS | 34697 | 34733 | 34697 | ID=Msa1413570-mRNA-1:cds;Parent=Msa1413570-mRNA-1 |
| tig0024035 | CDS | 34841 | 34881 | 34841 | ID=Msa1413570-mRNA-1:cds;Parent=Msa1413570-mRNA-1 |
| tig0024035 | CDS | 37870 | 38100 | 37870 | ID=Msa1413570-mRNA-1:cds;Parent=Msa1413570-mRNA-1 |
| tig0024035 | CDS | 38198 | 38300 | 38198 | ID=Msa1413570-mRNA-1:cds;Parent=Msa1413570-mRNA-1 |
| tig0024035 | CDS | 38401 | 38468 | 38401 | ID=Msa1413570-mRNA-1:cds;Parent=Msa1413570-mRNA-1 |
| tig0024035 | CDS | 38570 | 38608 | 38570 | ID=Msa1413570-mRNA-1:cds;Parent=Msa1413570-mRNA-1 |
| tig0024035 | three_prime_UTR | 38609 | 38854 | 38609 | ID=Msa1413570-mRNA-1:three_prime_utr;Parent=Msa1413570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
