Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656450 | XP_013446562.1 | 98.844 | 173 | 2 | 0 | 25 | 197 | 1 | 173 | 3.09e-124 | 358 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656450 | sp|Q93VI3|RL171_ARATH | 87.861 | 173 | 21 | 0 | 25 | 197 | 1 | 173 | 4.79e-113 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656450 | I3SHA1 | 98.844 | 173 | 2 | 0 | 25 | 197 | 1 | 173 | 1.47e-124 | 358 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0656450 | 0.836937 | 6.982401e-57 | -8.615850e-47 |
| Msa0003030 | Msa0656450 | 0.859684 | 3.488596e-63 | -8.615850e-47 |
| Msa0003330 | Msa0656450 | 0.837379 | 5.382176e-57 | -8.615850e-47 |
| Msa0042510 | Msa0656450 | 0.902420 | 9.876154e-79 | -8.615850e-47 |
| Msa0079560 | Msa0656450 | 0.909416 | 5.835142e-82 | -8.615850e-47 |
| Msa0086160 | Msa0656450 | 0.833674 | 4.657597e-56 | -8.615850e-47 |
| Msa0094210 | Msa0656450 | 0.834784 | 2.452633e-56 | -8.615850e-47 |
| Msa0116600 | Msa0656450 | 0.841053 | 6.000215e-58 | -8.615850e-47 |
| Msa0116690 | Msa0656450 | 0.832026 | 1.195055e-55 | -8.615850e-47 |
| Msa0602900 | Msa0656450 | 0.859225 | 4.790508e-63 | -8.615850e-47 |
| Msa0605600 | Msa0656450 | 0.824369 | 8.378938e-54 | -8.615850e-47 |
| Msa0605890 | Msa0656450 | 0.820003 | 8.626334e-53 | -8.615850e-47 |
| Msa0609120 | Msa0656450 | 0.853220 | 2.758926e-61 | -8.615850e-47 |
| Msa0619230 | Msa0656450 | 0.913120 | 8.888327e-84 | -8.615850e-47 |
| Msa0621190 | Msa0656450 | 0.899080 | 2.823615e-77 | -8.615850e-47 |
| Msa0643960 | Msa0656450 | 0.853786 | 1.898206e-61 | -8.615850e-47 |
| Msa0649890 | Msa0656450 | 0.808056 | 3.735185e-50 | -8.615850e-47 |
| Msa0656450 | Msa0691760 | 0.901995 | 1.522410e-78 | -8.615850e-47 |
| Msa0656450 | Msa0694400 | 0.870540 | 1.350541e-66 | -8.615850e-47 |
| Msa0656450 | Msa0700370 | 0.931648 | 2.767326e-94 | -8.615850e-47 |
| Msa0656450 | Msa0704860 | 0.840899 | 6.584155e-58 | -8.615850e-47 |
| Msa0656450 | Msa0708630 | 0.850411 | 1.728479e-60 | -8.615850e-47 |
| Msa0656450 | Msa0759660 | 0.811857 | 5.675148e-51 | -8.615850e-47 |
| Msa0656450 | Msa0790450 | 0.837567 | 4.818000e-57 | -8.615850e-47 |
| Msa0656450 | Msa0798590 | 0.801891 | 7.268800e-49 | -8.615850e-47 |
| Msa0656450 | Msa0826610 | 0.808052 | 3.742110e-50 | -8.615850e-47 |
| Msa0656450 | Msa0864660 | 0.804690 | 1.914172e-49 | -8.615850e-47 |
| Msa0656450 | Msa0902730 | 0.824959 | 6.082487e-54 | -8.615850e-47 |
| Msa0656450 | Msa0929700 | 0.843913 | 1.045799e-58 | -8.615850e-47 |
| Msa0656450 | Msa0930100 | 0.830611 | 2.664599e-55 | -8.615850e-47 |
| Msa0656450 | Msa0930360 | 0.916435 | 1.787513e-85 | -8.615850e-47 |
| Msa0656450 | Msa0930790 | 0.909731 | 4.117557e-82 | -8.615850e-47 |
| Msa0656450 | Msa0930890 | 0.820740 | 5.845966e-53 | -8.615850e-47 |
| Msa0656450 | Msa0987570 | 0.823710 | 1.196269e-53 | -8.615850e-47 |
| Msa0656450 | Msa0998890 | 0.819616 | 1.057981e-52 | -8.615850e-47 |
| Msa0656450 | Msa1068660 | 0.801822 | 7.510840e-49 | -8.615850e-47 |
| Msa0656450 | Msa1082050 | 0.854602 | 1.103468e-61 | -8.615850e-47 |
| Msa0656450 | Msa1093500 | 0.802847 | 4.619225e-49 | -8.615850e-47 |
| Msa0656450 | Msa1124980 | 0.814832 | 1.260190e-51 | -8.615850e-47 |
| Msa0656450 | Msa1126690 | 0.844801 | 6.036774e-59 | -8.615850e-47 |
| Msa0656450 | Msa1144630 | 0.911616 | 4.968398e-83 | -8.615850e-47 |
| Msa0656450 | Msa1165210 | 0.824864 | 6.407204e-54 | -8.615850e-47 |
| Msa0656450 | Msa1165700 | 0.903970 | 1.998280e-79 | -8.615850e-47 |
| Msa0656450 | Msa1167360 | 0.807433 | 5.067428e-50 | -8.615850e-47 |
| Msa0656450 | Msa1183630 | 0.809911 | 1.496955e-50 | -8.615850e-47 |
| Msa0656450 | Msa1213850 | 0.807564 | 4.753293e-50 | -8.615850e-47 |
| Msa0656450 | Msa1227350 | 0.872752 | 2.497783e-67 | -8.615850e-47 |
| Msa0656450 | Msa1235950 | 0.863023 | 3.346523e-64 | -8.615850e-47 |
| Msa0656450 | Msa1235980 | 0.869659 | 2.623822e-66 | -8.615850e-47 |
| Msa0656450 | Msa1237040 | 0.843546 | 1.311039e-58 | -8.615850e-47 |
| Msa0656450 | Msa1245270 | 0.839758 | 1.308246e-57 | -8.615850e-47 |
| Msa0656450 | Msa1284800 | 0.876694 | 1.138840e-68 | -8.615850e-47 |
| Msa0656450 | Msa1296090 | 0.820397 | 7.008554e-53 | -8.615850e-47 |
| Msa0656450 | Msa1316100 | 0.816712 | 4.799877e-52 | -8.615850e-47 |
| Msa0656450 | Msa1317390 | 0.892017 | 2.338771e-74 | -8.615850e-47 |
| Msa0656450 | Msa1351020 | 0.898898 | 3.376074e-77 | -8.615850e-47 |
| Msa0656450 | Msa1363910 | 0.819653 | 1.037176e-52 | -8.615850e-47 |
| Msa0656450 | Msa1363930 | 0.913319 | 7.061596e-84 | -8.615850e-47 |
| Msa0656450 | Msa1366540 | 0.861747 | 8.255783e-64 | -8.615850e-47 |
| Msa0656450 | Msa1385480 | 0.864766 | 9.601982e-65 | -8.615850e-47 |
| Msa0656450 | Msa1387750 | 0.910930 | 1.078798e-82 | -8.615850e-47 |
| Msa0656450 | Msa1390760 | 0.914001 | 3.198533e-84 | -8.615850e-47 |
| Msa0656450 | Msa1403520 | 0.843298 | 1.526743e-58 | -8.615850e-47 |
| Msa0656450 | Msa1407550 | 0.921513 | 3.248400e-88 | -8.615850e-47 |
| Msa0656450 | Msa1413570 | 0.998505 | 4.483141e-267 | -8.615850e-47 |
| Msa0656450 | Msa1424570 | 0.819200 | 1.315908e-52 | -8.615850e-47 |
| Msa0656450 | Msa1432310 | 0.947313 | 8.572148e-106 | -8.615850e-47 |
| Msa0656450 | Msa1446510 | 0.871562 | 6.218509e-67 | -8.615850e-47 |
| Msa0656450 | Msa1450560 | 0.841109 | 5.798010e-58 | -8.615850e-47 |
| Msa0656450 | Msa1453530 | 0.802749 | 4.840085e-49 | -8.615850e-47 |
| Msa0656450 | Msa1462580 | 0.812626 | 3.857077e-51 | -8.615850e-47 |
| Msa0656450 | Msa1463510 | 0.863924 | 1.757977e-64 | -8.615850e-47 |
| Msa0656450 | Msa1463570 | 0.843213 | 1.609187e-58 | -8.615850e-47 |
| Msa0656450 | Msa1465700 | 0.854631 | 1.082360e-61 | -8.615850e-47 |
| Msa0656450 | Msa1465890 | 0.848402 | 6.272552e-60 | -8.615850e-47 |
| Msa0123290 | Msa0656450 | 0.826364 | 2.825607e-54 | -8.615850e-47 |
| Msa0127230 | Msa0656450 | 0.903953 | 2.035235e-79 | -8.615850e-47 |
| Msa0128330 | Msa0656450 | 0.850942 | 1.225135e-60 | -8.615850e-47 |
| Msa0132460 | Msa0656450 | 0.848737 | 5.065878e-60 | -8.615850e-47 |
| Msa0146910 | Msa0656450 | 0.857615 | 1.447093e-62 | -8.615850e-47 |
| Msa0167860 | Msa0656450 | 0.837215 | 5.927432e-57 | -8.615850e-47 |
| Msa0168320 | Msa0656450 | 0.855037 | 8.255532e-62 | -8.615850e-47 |
| Msa0172300 | Msa0656450 | 0.808974 | 2.378624e-50 | -8.615850e-47 |
| Msa0174580 | Msa0656450 | 0.842141 | 3.099523e-58 | -8.615850e-47 |
| Msa0182050 | Msa0656450 | 0.853086 | 3.015365e-61 | -8.615850e-47 |
| Msa0182100 | Msa0656450 | 0.875195 | 3.729852e-68 | -8.615850e-47 |
| Msa0188740 | Msa0656450 | 0.839065 | 1.979571e-57 | -8.615850e-47 |
| Msa0192300 | Msa0656450 | 0.885770 | 6.105920e-72 | -8.615850e-47 |
| Msa0216200 | Msa0656450 | 0.826912 | 2.091201e-54 | -8.615850e-47 |
| Msa0233550 | Msa0656450 | 0.869650 | 2.641241e-66 | -8.615850e-47 |
| Msa0371490 | Msa0656450 | 0.861601 | 9.149873e-64 | -8.615850e-47 |
| Msa0373350 | Msa0656450 | 0.899721 | 1.497274e-77 | -8.615850e-47 |
| Msa0376850 | Msa0656450 | 0.873092 | 1.921505e-67 | -8.615850e-47 |
| Msa0377610 | Msa0656450 | 0.819705 | 1.009394e-52 | -8.615850e-47 |
| Msa0382670 | Msa0656450 | 0.833631 | 4.773728e-56 | -8.615850e-47 |
| Msa0387290 | Msa0656450 | 0.875506 | 2.919426e-68 | -8.615850e-47 |
| Msa0388520 | Msa0656450 | 0.867329 | 1.483161e-65 | -8.615850e-47 |
| Msa0388540 | Msa0656450 | 0.800916 | 1.151175e-48 | -8.615850e-47 |
| Msa0416470 | Msa0656450 | 0.830151 | 3.451469e-55 | -8.615850e-47 |
| Msa0421920 | Msa0656450 | 0.876723 | 1.112854e-68 | -8.615850e-47 |
| Msa0426090 | Msa0656450 | 0.809861 | 1.534793e-50 | -8.615850e-47 |
| Msa0426250 | Msa0656450 | 0.800657 | 1.300467e-48 | -8.615850e-47 |
| Msa0426820 | Msa0656450 | 0.819485 | 1.133350e-52 | -8.615850e-47 |
| Msa0426940 | Msa0656450 | 0.843414 | 1.421812e-58 | -8.615850e-47 |
| Msa0433010 | Msa0656450 | 0.802840 | 4.635854e-49 | -8.615850e-47 |
| Msa0467740 | Msa0656450 | 0.861489 | 9.900177e-64 | -8.615850e-47 |
| Msa0472480 | Msa0656450 | 0.808838 | 2.543476e-50 | -8.615850e-47 |
| Msa0477670 | Msa0656450 | 0.842319 | 2.781459e-58 | -8.615850e-47 |
| Msa0482560 | Msa0656450 | 0.814609 | 1.411944e-51 | -8.615850e-47 |
| Msa0239420 | Msa0656450 | 0.836098 | 1.141767e-56 | -8.615850e-47 |
| Msa0256350 | Msa0656450 | 0.843892 | 1.059704e-58 | -8.615850e-47 |
| Msa0270160 | Msa0656450 | 0.858047 | 1.077263e-62 | -8.615850e-47 |
| Msa0274940 | Msa0656450 | 0.813078 | 3.070994e-51 | -8.615850e-47 |
| Msa0277600 | Msa0656450 | 0.838938 | 2.135557e-57 | -8.615850e-47 |
| Msa0301250 | Msa0656450 | 0.892005 | 2.363233e-74 | -8.615850e-47 |
| Msa0313060 | Msa0656450 | 0.875840 | 2.243014e-68 | -8.615850e-47 |
| Msa0315430 | Msa0656450 | 0.825267 | 5.146013e-54 | -8.615850e-47 |
| Msa0485220 | Msa0656450 | 0.825221 | 5.274640e-54 | -8.615850e-47 |
| Msa0511760 | Msa0656450 | 0.896793 | 2.623437e-76 | -8.615850e-47 |
| Msa0514130 | Msa0656450 | 0.855165 | 7.575471e-62 | -8.615850e-47 |
| Msa0516830 | Msa0656450 | 0.872796 | 2.414385e-67 | -8.615850e-47 |
| Msa0524340 | Msa0656450 | 0.819241 | 1.287543e-52 | -8.615850e-47 |
| Msa0547920 | Msa0656450 | 0.853116 | 2.955870e-61 | -8.615850e-47 |
| Msa0563540 | Msa0656450 | 0.808181 | 3.513119e-50 | -8.615850e-47 |
| Msa0573550 | Msa0656450 | 0.861009 | 1.386214e-63 | -8.615850e-47 |
| Msa0574780 | Msa0656450 | 0.888344 | 6.416237e-73 | -8.615850e-47 |
| Msa0578010 | Msa0656450 | 0.975522 | 4.151504e-140 | -8.615850e-47 |
| Msa0589160 | Msa0656450 | 0.828870 | 7.069296e-55 | -8.615850e-47 |
| Msa0597240 | Msa0656450 | 0.808094 | 3.666636e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656450 | MtrunA17_Chr8g0377301 | 98.844 | 173 | 2 | 0 | 25 | 197 | 1 | 173 | 2.84e-128 | 358 |
| Msa0656450 | MtrunA17_Chr3g0122641 | 95.954 | 173 | 7 | 0 | 25 | 197 | 1 | 173 | 5.03e-126 | 352 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656450 | AT1G27400.1 | 87.861 | 173 | 21 | 0 | 25 | 197 | 1 | 173 | 4.87e-114 | 322 |
| Msa0656450 | AT1G67430.1 | 87.283 | 173 | 22 | 0 | 25 | 197 | 1 | 173 | 1.12e-113 | 321 |
| Msa0656450 | AT1G67430.2 | 64.162 | 173 | 18 | 1 | 25 | 197 | 1 | 129 | 6.10e-71 | 211 |
Find 66 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATTAGAGTGTCTATTCT+TGG | 0.210303 | 4_3:-65754804 | None:intergenic |
| TCTTCTTGCTTGCTGCCAAC+TGG | 0.224595 | 4_3:-65755376 | None:intergenic |
| TTACACTTGGTAGGGTTATC+AGG | 0.253880 | 4_3:-65752256 | None:intergenic |
| ATCATTAAATAGATATTTCT+TGG | 0.256668 | 4_3:+65755612 | Msa0656450:three_prime_UTR |
| TATTGCTGCCTTGTACTCTT+AGG | 0.257568 | 4_3:+65755421 | Msa0656450:three_prime_UTR |
| GCCCTCTATCGTTTATTTGC+AGG | 0.259687 | 4_3:+65752083 | Msa0656450:CDS |
| TGCCCTTGACCAAGGCTAAA+AGG | 0.311470 | 4_3:+65754702 | Msa0656450:CDS |
| TATAAAATAGAACATAGTTT+TGG | 0.317872 | 4_3:-65755496 | None:intergenic |
| TAGAGTGTCTATTCTTGGCC+TGG | 0.328430 | 4_3:-65754799 | None:intergenic |
| ACCATGACGACGGCGTTTGA+TGG | 0.349011 | 4_3:-65752108 | None:intergenic |
| GACGTTTCTGTCGTGGTGTT+GGG | 0.366723 | 4_3:+65754768 | Msa0656450:CDS |
| TACTTTCTAGGTCAAAGGTT+TGG | 0.377018 | 4_3:+65754986 | Msa0656450:intron |
| CTTCTTGCTTGCTGCCAACT+GGG | 0.392921 | 4_3:-65755375 | None:intergenic |
| CTTGCTGCCAACTGGGACTC+CGG | 0.394551 | 4_3:-65755368 | None:intergenic |
| GCTTCTGTGCTTGATTGACT+TGG | 0.407265 | 4_3:-65755037 | None:intergenic |
| AGAGTGTCTATTCTTGGCCT+GGG | 0.411697 | 4_3:-65754798 | None:intergenic |
| AGACGTTTCTGTCGTGGTGT+TGG | 0.422500 | 4_3:+65754767 | Msa0656450:CDS |
| GGGAAACTGCCTTTGCCATC+AGG | 0.434248 | 4_3:+65754675 | Msa0656450:CDS |
| CAAGTCAGCGAAGTTTATCC+TGG | 0.440074 | 4_3:+65754844 | Msa0656450:CDS |
| AGACGTTCTTGCACACAAAC+AGG | 0.445626 | 4_3:+65754733 | Msa0656450:CDS |
| ATAAACTTCGCTGACTTGAC+TGG | 0.446611 | 4_3:-65754839 | None:intergenic |
| GAGGTCAGCACCACGAGCCT+TGG | 0.456110 | 4_3:-65752385 | None:intergenic |
| GTCAGCACCACGAGCCTTGG+TGG | 0.461811 | 4_3:-65752382 | None:intergenic |
| TGGTGTTGGGAGGACAGCCC+AGG | 0.463667 | 4_3:+65754781 | Msa0656450:CDS |
| GCCAAGAATAGACACTCTAA+TGG | 0.473513 | 4_3:+65754803 | Msa0656450:CDS |
| AATTGTACTTGCAGAACACT+AGG | 0.474152 | 4_3:+65754654 | Msa0656450:intron |
| AAGAAGAGGGCTTAAACTCT+AGG | 0.479337 | 4_3:+65755392 | Msa0656450:exon |
| CCATTCAGACGTTTCTGTCG+TGG | 0.491424 | 4_3:+65754761 | Msa0656450:CDS |
| TGACCTCAGAGTTCATTTCA+AGG | 0.493325 | 4_3:+65752401 | Msa0656450:CDS |
| CCACGACAGAAACGTCTGAA+TGG | 0.493513 | 4_3:-65754761 | None:intergenic |
| ATTACTACTTTCTAGGTCAA+AGG | 0.496618 | 4_3:+65754981 | Msa0656450:intron |
| TCCATCAAACGCCGTCGTCA+TGG | 0.500893 | 4_3:+65752107 | Msa0656450:CDS |
| GACCAAGGCTAAAAGGTACT+TGG | 0.501746 | 4_3:+65754709 | Msa0656450:CDS |
| AGAAGTTGCTTACACTTGGT+AGG | 0.508381 | 4_3:-65752265 | None:intergenic |
| AACGATAGAGGGCTGAGAGC+AGG | 0.508536 | 4_3:-65752073 | None:intergenic |
| AACCTGCAAATAAACGATAG+AGG | 0.523015 | 4_3:-65752085 | None:intergenic |
| ACATACGGTTGATTCTTCCA+TGG | 0.528331 | 4_3:-65755082 | None:intergenic |
| AATTGTCAAACATGATTCAC+CGG | 0.528999 | 4_3:+65755567 | Msa0656450:three_prime_UTR |
| CTGCATTCTTCAGCAAATCC+AGG | 0.531822 | 4_3:-65754862 | None:intergenic |
| GAAGTTGCTTACACTTGGTA+GGG | 0.534908 | 4_3:-65752264 | None:intergenic |
| GGAAGAGGCGGTTCAGAAAG+AGG | 0.535941 | 4_3:+65755245 | Msa0656450:CDS |
| ATTAAATAGATATTTCTTGG+TGG | 0.542034 | 4_3:+65755615 | Msa0656450:three_prime_UTR |
| CATACGGTTGATTCTTCCAT+GGG | 0.548316 | 4_3:-65755081 | None:intergenic |
| CGCAGAACATACAGAGCCCA+TGG | 0.557011 | 4_3:+65755065 | Msa0656450:CDS |
| GTTGGCAGCAAGCAAGAAGA+GGG | 0.565267 | 4_3:+65755379 | Msa0656450:CDS |
| ACCTGCAAATAAACGATAGA+GGG | 0.576091 | 4_3:-65752084 | None:intergenic |
| AGCAGGAATGAAGTGAGGTA+TGG | 0.580970 | 4_3:-65752056 | None:intergenic |
| GGGCAACTTCCTGATGGCAA+AGG | 0.587242 | 4_3:-65754684 | None:intergenic |
| GGTCAAGGGCAACTTCCTGA+TGG | 0.590928 | 4_3:-65754690 | None:intergenic |
| AGTTGGCAGCAAGCAAGAAG+AGG | 0.597913 | 4_3:+65755378 | Msa0656450:CDS |
| ATTGTACTTGCAGAACACTA+GGG | 0.598625 | 4_3:+65754655 | Msa0656450:intron |
| TGACAAGACCTAAGAGTACA+AGG | 0.608536 | 4_3:-65755429 | None:intergenic |
| GTTTCTGTCGTGGTGTTGGG+AGG | 0.609236 | 4_3:+65754771 | Msa0656450:CDS |
| AAAATCAACTCAATGTGGCA+AGG | 0.612514 | 4_3:-65755213 | None:intergenic |
| TTTCCAGCCGGAGTCCCAGT+TGG | 0.613767 | 4_3:+65755361 | Msa0656450:intron |
| TTTATCTGAAAAGGAAGAGG+CGG | 0.620263 | 4_3:+65755233 | Msa0656450:CDS |
| ACAGAAACGTCTGAATGGAA+TGG | 0.621533 | 4_3:-65754756 | None:intergenic |
| CAGATAAAATCAACTCAATG+TGG | 0.623662 | 4_3:-65755218 | None:intergenic |
| CAGGAAGTTGCCCTTGACCA+AGG | 0.624452 | 4_3:+65754694 | Msa0656450:CDS |
| CATGCAGCCACCAAGGCTCG+TGG | 0.636269 | 4_3:+65752375 | Msa0656450:intron |
| GACACTCTAATGGACAAGGA+AGG | 0.649233 | 4_3:+65754813 | Msa0656450:CDS |
| TTACCTTGAAATGAACTCTG+AGG | 0.651324 | 4_3:-65752404 | None:intergenic |
| ACTCTAATGGACAAGGAAGG+TGG | 0.651493 | 4_3:+65754816 | Msa0656450:CDS |
| CTGAGAGCAGGAATGAAGTG+AGG | 0.665047 | 4_3:-65752061 | None:intergenic |
| AATAGACACTCTAATGGACA+AGG | 0.667364 | 4_3:+65754809 | Msa0656450:CDS |
| TTCAATACTTACCATGACGA+CGG | 0.679696 | 4_3:-65752118 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTATTTTTTTATA+AGG | + | chr4_3:65752687-65752706 | Msa0656450:intron | 0.0% |
| !!! | TGTTTTATTATTATAGATTA+TGG | + | chr4_3:65753664-65753683 | Msa0656450:intron | 10.0% |
| !! | ATCATTAATAAAACATAATT+GGG | - | chr4_3:65754559-65754578 | None:intergenic | 10.0% |
| !! | AATCATTAATAAAACATAAT+TGG | - | chr4_3:65754560-65754579 | None:intergenic | 10.0% |
| !! | TTCATAAAAAAATCATATAA+AGG | - | chr4_3:65754615-65754634 | None:intergenic | 10.0% |
| !!! | TTTTTATAAGGTAATAGATA+AGG | + | chr4_3:65752699-65752718 | Msa0656450:intron | 15.0% |
| !!! | ATTTAGTTTATAGATGAAAA+AGG | + | chr4_3:65753702-65753721 | Msa0656450:intron | 15.0% |
| !!! | TAATAACCATGATTTTTTTA+AGG | + | chr4_3:65753774-65753793 | Msa0656450:intron | 15.0% |
| !!! | ATATAAAACTCATTGTTATT+GGG | + | chr4_3:65753970-65753989 | Msa0656450:intron | 15.0% |
| !! | TATATAATCAAGTAATAATG+AGG | - | chr4_3:65754211-65754230 | None:intergenic | 15.0% |
| !!! | CAACTTGTATTTTTAATTAA+AGG | + | chr4_3:65754448-65754467 | Msa0656450:intron | 15.0% |
| !! | TATTGCTTATTTAATTGTTT+CGG | + | chr4_3:65755296-65755315 | Msa0656450:intron | 15.0% |
| !!! | TATAAAATAGAACATAGTTT+TGG | - | chr4_3:65755499-65755518 | None:intergenic | 15.0% |
| !!! | TCTATTTAATGATTTTATCA+CGG | - | chr4_3:65755605-65755624 | None:intergenic | 15.0% |
| !! | ATCATTAAATAGATATTTCT+TGG | + | chr4_3:65755612-65755631 | Msa0656450:three_prime_UTR | 15.0% |
| !!! | TGTTTGTTTTTCGAATTTTT+AGG | + | chr4_3:65752216-65752235 | Msa0656450:intron | 20.0% |
| !! | TACAACAAAAAATGAGTATT+AGG | - | chr4_3:65752510-65752529 | None:intergenic | 20.0% |
| !!! | ATATAAATCCCATTGTTATT+GGG | + | chr4_3:65752950-65752969 | Msa0656450:intron | 20.0% |
| !! | GAAACCTATAATCATAAAAA+GGG | - | chr4_3:65753151-65753170 | None:intergenic | 20.0% |
| !! | TGAAACCTATAATCATAAAA+AGG | - | chr4_3:65753152-65753171 | None:intergenic | 20.0% |
| !! | ATGATTATAGGTTTCATAAA+TGG | + | chr4_3:65753156-65753175 | Msa0656450:intron | 20.0% |
| !!! | ATATATAACCCATTGTTATT+GGG | + | chr4_3:65753573-65753592 | Msa0656450:intron | 20.0% |
| !! | AGAACCTTAAATCATAAAAA+GGG | - | chr4_3:65753809-65753828 | None:intergenic | 20.0% |
| !! | GATATAAAACTCATTGTTAT+TGG | + | chr4_3:65753969-65753988 | Msa0656450:intron | 20.0% |
| !! | TACTTGATTATATAAGACAT+AGG | + | chr4_3:65754217-65754236 | Msa0656450:intron | 20.0% |
| !!! | ATCATAAGATTTGAAACATA+CGG | - | chr4_3:65755100-65755119 | None:intergenic | 20.0% |
| !!! | GTTCTATTTTATACTGAATT+TGG | + | chr4_3:65755506-65755525 | Msa0656450:three_prime_UTR | 20.0% |
| !! | ATTAAATAGATATTTCTTGG+TGG | + | chr4_3:65755615-65755634 | Msa0656450:three_prime_UTR | 20.0% |
| !!! | TTTTGTGTTTTGAGCATAAT+TGG | + | chr4_3:65752297-65752316 | Msa0656450:intron | 25.0% |
| !!! | TTTGAGCATAATTGGTTTTT+TGG | + | chr4_3:65752305-65752324 | Msa0656450:intron | 25.0% |
| !!! | TTGAGCATAATTGGTTTTTT+GGG | + | chr4_3:65752306-65752325 | Msa0656450:intron | 25.0% |
| ! | AATAGATAAGGTAATCCAAA+CGG | + | chr4_3:65752711-65752730 | Msa0656450:intron | 25.0% |
| ! | AACAAATTTGACAATGACTA+GGG | - | chr4_3:65752737-65752756 | None:intergenic | 25.0% |
| !! | TAGTCATTGTCAAATTTGTT+GGG | + | chr4_3:65752737-65752756 | Msa0656450:intron | 25.0% |
| ! | AGAAATGTAGTTTGAAAATC+TGG | + | chr4_3:65752819-65752838 | Msa0656450:intron | 25.0% |
| ! | GATATAAATCCCATTGTTAT+TGG | + | chr4_3:65752949-65752968 | Msa0656450:intron | 25.0% |
| !! | AGTTCCCTTTTTATGATTAT+AGG | + | chr4_3:65753144-65753163 | Msa0656450:intron | 25.0% |
| ! | GATATATAACCCATTGTTAT+TGG | + | chr4_3:65753572-65753591 | Msa0656450:intron | 25.0% |
| ! | CAGAACCTTAAATCATAAAA+AGG | - | chr4_3:65753810-65753829 | None:intergenic | 25.0% |
| !! | TTTTATATCCCTGAATGTTA+CGG | - | chr4_3:65753958-65753977 | None:intergenic | 25.0% |
| ! | ATGTAATATTGAACTGGAAA+AGG | - | chr4_3:65754258-65754277 | None:intergenic | 25.0% |
| !! | TTTTCCAGTTCAATATTACA+TGG | + | chr4_3:65754257-65754276 | Msa0656450:intron | 25.0% |
| !! | TTTTCCATGTAATATTGAAC+TGG | - | chr4_3:65754264-65754283 | None:intergenic | 25.0% |
| ! | CTCTCTAAACAATTATTGTT+TGG | + | chr4_3:65754511-65754530 | Msa0656450:intron | 25.0% |
| ! | AACGTTAATTACTACTTTCT+AGG | + | chr4_3:65754974-65754993 | Msa0656450:intron | 25.0% |
| !!! | TGTGTTTTTTTTTGAAAGTG+TGG | + | chr4_3:65755143-65755162 | Msa0656450:intron | 25.0% |
| !!! | TGAGTTGATTTTATCTGAAA+AGG | + | chr4_3:65755224-65755243 | Msa0656450:CDS | 25.0% |
| TTAGGTAACACAAATTGAAC+TGG | - | chr4_3:65752492-65752511 | None:intergenic | 30.0% | |
| AAGCTAAAAACAAGCTTGTA+AGG | + | chr4_3:65752592-65752611 | Msa0656450:intron | 30.0% | |
| CAACAAATTTGACAATGACT+AGG | - | chr4_3:65752738-65752757 | None:intergenic | 30.0% | |
| CTAGTCATTGTCAAATTTGT+TGG | + | chr4_3:65752736-65752755 | Msa0656450:intron | 30.0% | |
| ATGTAGTTTGAAAATCTGGA+AGG | + | chr4_3:65752823-65752842 | Msa0656450:intron | 30.0% | |
| !! | TTTTTCAATCAGGTTACAAG+AGG | - | chr4_3:65752882-65752901 | None:intergenic | 30.0% |
| ATTTATATCCCTGAAGGTTA+CGG | - | chr4_3:65752938-65752957 | None:intergenic | 30.0% | |
| AATGTACCTCGTTAAATTCA+GGG | + | chr4_3:65753117-65753136 | Msa0656450:intron | 30.0% | |
| ACCTCATTACTTAGATTGTT+TGG | + | chr4_3:65753310-65753329 | Msa0656450:intron | 30.0% | |
| ACCAAACAATCTAAGTAATG+AGG | - | chr4_3:65753314-65753333 | None:intergenic | 30.0% | |
| ACCTCATTACTTAGATTGTT+TGG | + | chr4_3:65753310-65753329 | Msa0656450:intron | 30.0% | |
| ACCAAACAATCTAAGTAATG+AGG | - | chr4_3:65753314-65753333 | None:intergenic | 30.0% | |
| TTGAAAAAAAAGCAGTGGTT+TGG | + | chr4_3:65753515-65753534 | Msa0656450:intron | 30.0% | |
| TTATATATCCCTGAAGGTTA+CGG | - | chr4_3:65753561-65753580 | None:intergenic | 30.0% | |
| TTTATAGATGAAAAAGGCAG+TGG | + | chr4_3:65753708-65753727 | Msa0656450:intron | 30.0% | |
| GGTTCACCTTAAAAAAATCA+TGG | - | chr4_3:65753783-65753802 | None:intergenic | 30.0% | |
| CTTAAATCATAAAAAGGGAG+AGG | - | chr4_3:65753804-65753823 | None:intergenic | 30.0% | |
| ! | CTCTCCCTTTTTATGATTTA+AGG | + | chr4_3:65753802-65753821 | Msa0656450:intron | 30.0% |
| TTTATATCCCTGAATGTTAC+GGG | - | chr4_3:65753957-65753976 | None:intergenic | 30.0% | |
| ! | TGATATGTGTTGACATGTAT+TGG | + | chr4_3:65754111-65754130 | Msa0656450:intron | 30.0% |
| ATTACATGGAAAAGACGTAT+AGG | + | chr4_3:65754271-65754290 | Msa0656450:intron | 30.0% | |
| TCCTGATGTAAAAAGAAAAC+AGG | + | chr4_3:65754304-65754323 | Msa0656450:intron | 30.0% | |
| ! | ACCTGTTTTCTTTTTACATC+AGG | - | chr4_3:65754308-65754327 | None:intergenic | 30.0% |
| ATTACTACTTTCTAGGTCAA+AGG | + | chr4_3:65754981-65755000 | Msa0656450:intron | 30.0% | |
| CAGATAAAATCAACTCAATG+TGG | - | chr4_3:65755221-65755240 | None:intergenic | 30.0% | |
| ! | GATTTTATCTGAAAAGGAAG+AGG | + | chr4_3:65755230-65755249 | Msa0656450:CDS | 30.0% |
| ! | TAATTGTTTCGGCAAGATTT+TGG | + | chr4_3:65755307-65755326 | Msa0656450:intron | 30.0% |
| !!! | ATTCTGATATTTTTTCCAGC+CGG | + | chr4_3:65755349-65755368 | Msa0656450:intron | 30.0% |
| AATTGTCAAACATGATTCAC+CGG | + | chr4_3:65755567-65755586 | Msa0656450:three_prime_UTR | 30.0% | |
| ACCTGCAAATAAACGATAGA+GGG | - | chr4_3:65752087-65752106 | None:intergenic | 35.0% | |
| AACCTGCAAATAAACGATAG+AGG | - | chr4_3:65752088-65752107 | None:intergenic | 35.0% | |
| TTCAATACTTACCATGACGA+CGG | - | chr4_3:65752121-65752140 | None:intergenic | 35.0% | |
| TTACAGAAGTTGCTTACACT+TGG | - | chr4_3:65752272-65752291 | None:intergenic | 35.0% | |
| TTACCTTGAAATGAACTCTG+AGG | - | chr4_3:65752407-65752426 | None:intergenic | 35.0% | |
| AAATCTGGAAGGAAAAAAGC+TGG | + | chr4_3:65752834-65752853 | Msa0656450:intron | 35.0% | |
| AATCTGGAAGGAAAAAAGCT+GGG | + | chr4_3:65752835-65752854 | Msa0656450:intron | 35.0% | |
| AACCTGATTGAAAAAAGCAG+TGG | + | chr4_3:65752887-65752906 | Msa0656450:intron | 35.0% | |
| TTTATATCCCTGAAGGTTAC+GGG | - | chr4_3:65752937-65752956 | None:intergenic | 35.0% | |
| AATGGGATTTATATCCCTGA+AGG | - | chr4_3:65752944-65752963 | None:intergenic | 35.0% | |
| TAGGTTCACCCAATAACAAT+GGG | - | chr4_3:65752961-65752980 | None:intergenic | 35.0% | |
| ATAGGTTCACCCAATAACAA+TGG | - | chr4_3:65752962-65752981 | None:intergenic | 35.0% | |
| GTATCACAAAGACAAGACAT+AGG | - | chr4_3:65752980-65752999 | None:intergenic | 35.0% | |
| GAATGTACCTCGTTAAATTC+AGG | + | chr4_3:65753116-65753135 | Msa0656450:intron | 35.0% | |
| !!! | CCACTGCTTTTTTTTCAATC+AGG | - | chr4_3:65753513-65753532 | None:intergenic | 35.0% |
| CCTGATTGAAAAAAAAGCAG+TGG | + | chr4_3:65753510-65753529 | Msa0656450:intron | 35.0% | |
| TATATATCCCTGAAGGTTAC+GGG | - | chr4_3:65753560-65753579 | None:intergenic | 35.0% | |
| !! | AATGGGTTATATATCCCTGA+AGG | - | chr4_3:65753567-65753586 | None:intergenic | 35.0% |
| AACCTGATTGAAAAAAGCAG+TGG | + | chr4_3:65752887-65752906 | Msa0656450:intron | 35.0% | |
| GTATCACAAAGACAAGACAT+AGG | - | chr4_3:65752980-65752999 | None:intergenic | 35.0% | |
| TCTTTGTGATACGTGATTGA+AGG | + | chr4_3:65754008-65754027 | Msa0656450:intron | 35.0% | |
| ATTGAAGGTTCAGTAAACGA+TGG | + | chr4_3:65754023-65754042 | Msa0656450:intron | 35.0% | |
| TGATTTAGCCACCTTCTTAA+TGG | + | chr4_3:65754168-65754187 | Msa0656450:intron | 35.0% | |
| AGTAGCAGTAGCTTAATTGT+AGG | - | chr4_3:65754587-65754606 | None:intergenic | 35.0% | |
| AATTGTACTTGCAGAACACT+AGG | + | chr4_3:65754654-65754673 | Msa0656450:intron | 35.0% | |
| ATTGTACTTGCAGAACACTA+GGG | + | chr4_3:65754655-65754674 | Msa0656450:intron | 35.0% | |
| ! | TCCATTAGAGTGTCTATTCT+TGG | - | chr4_3:65754807-65754826 | None:intergenic | 35.0% |
| ! | AATAGACACTCTAATGGACA+AGG | + | chr4_3:65754809-65754828 | Msa0656450:CDS | 35.0% |
| TACTTTCTAGGTCAAAGGTT+TGG | + | chr4_3:65754986-65755005 | Msa0656450:intron | 35.0% | |
| AAAATCAACTCAATGTGGCA+AGG | - | chr4_3:65755216-65755235 | None:intergenic | 35.0% | |
| TTTATCTGAAAAGGAAGAGG+CGG | + | chr4_3:65755233-65755252 | Msa0656450:CDS | 35.0% | |
| ! | ATCACGGTTTTTGTAAACTC+CGG | - | chr4_3:65755589-65755608 | None:intergenic | 35.0% |
| TTACACTTGGTAGGGTTATC+AGG | - | chr4_3:65752259-65752278 | None:intergenic | 40.0% | |
| GAAGTTGCTTACACTTGGTA+GGG | - | chr4_3:65752267-65752286 | None:intergenic | 40.0% | |
| AGAAGTTGCTTACACTTGGT+AGG | - | chr4_3:65752268-65752287 | None:intergenic | 40.0% | |
| !!! | TTTTTTACATGCAGCCACCA+AGG | + | chr4_3:65752368-65752387 | Msa0656450:intron | 40.0% |
| TGACCTCAGAGTTCATTTCA+AGG | + | chr4_3:65752401-65752420 | Msa0656450:CDS | 40.0% | |
| ATCTGGAAGGAAAAAAGCTG+GGG | + | chr4_3:65752836-65752855 | Msa0656450:intron | 40.0% | |
| !!! | GACCACTGCTTTTTTCAATC+AGG | - | chr4_3:65752892-65752911 | None:intergenic | 40.0% |
| GATTGAAAAAAGCAGTGGTC+TGG | + | chr4_3:65752892-65752911 | Msa0656450:intron | 40.0% | |
| TCTTTGTGATACGTGACTGA+AGG | + | chr4_3:65752988-65753007 | Msa0656450:intron | 40.0% | |
| ACTGAAGGTTCAGTAAACGA+TGG | + | chr4_3:65753003-65753022 | Msa0656450:intron | 40.0% | |
| CTATCTCCCTGAATTTAACG+AGG | - | chr4_3:65753126-65753145 | None:intergenic | 40.0% | |
| ! | TCTAAGTAATGAGGTTAGCC+AGG | - | chr4_3:65753305-65753324 | None:intergenic | 40.0% |
| ! | TCTAAGTAATGAGGTTAGCC+AGG | - | chr4_3:65753305-65753324 | None:intergenic | 40.0% |
| GAGGTTCACCCAATAACAAT+GGG | - | chr4_3:65753584-65753603 | None:intergenic | 40.0% | |
| AGAGGTTCACCCAATAACAA+TGG | - | chr4_3:65753585-65753604 | None:intergenic | 40.0% | |
| GTATCACAAAGACAAGACAG+AGG | - | chr4_3:65753603-65753622 | None:intergenic | 40.0% | |
| TCTTTGTGATACGTGACTGA+AGG | + | chr4_3:65752988-65753007 | Msa0656450:intron | 40.0% | |
| !! | GTGGTTTGTTGTCTTGTGAA+TGG | + | chr4_3:65753727-65753746 | Msa0656450:intron | 40.0% |
| TCTCCCTGAGTTTAACAAGA+GGG | - | chr4_3:65753754-65753773 | None:intergenic | 40.0% | |
| ATCTCCCTGAGTTTAACAAG+AGG | - | chr4_3:65753755-65753774 | None:intergenic | 40.0% | |
| CAGGTTGTTGCATGACTATA+GGG | - | chr4_3:65753893-65753912 | None:intergenic | 40.0% | |
| ! | TCAGGTTGTTGCATGACTAT+AGG | - | chr4_3:65753894-65753913 | None:intergenic | 40.0% |
| !!! | GACCACTGCTTTTTTCAATC+AGG | - | chr4_3:65752892-65752911 | None:intergenic | 40.0% |
| GATTGAAAAAAGCAGTGGTC+TGG | + | chr4_3:65752892-65752911 | Msa0656450:intron | 40.0% | |
| AAGCAACTAGGCCATTAAGA+AGG | - | chr4_3:65754182-65754201 | None:intergenic | 40.0% | |
| ATGAGGCAAATCAAGCAACT+AGG | - | chr4_3:65754194-65754213 | None:intergenic | 40.0% | |
| ATATCACAGACATTTCCGAG+AGG | - | chr4_3:65754354-65754373 | None:intergenic | 40.0% | |
| !!! | TACCTTTTAGCCTTGGTCAA+GGG | - | chr4_3:65754707-65754726 | None:intergenic | 40.0% |
| ! | TTCCAAGTACCTTTTAGCCT+TGG | - | chr4_3:65754714-65754733 | None:intergenic | 40.0% |
| ACAGAAACGTCTGAATGGAA+TGG | - | chr4_3:65754759-65754778 | None:intergenic | 40.0% | |
| GCCAAGAATAGACACTCTAA+TGG | + | chr4_3:65754803-65754822 | Msa0656450:CDS | 40.0% | |
| !! | ATAAACTTCGCTGACTTGAC+TGG | - | chr4_3:65754842-65754861 | None:intergenic | 40.0% |
| ! | CATACGGTTGATTCTTCCAT+GGG | - | chr4_3:65755084-65755103 | None:intergenic | 40.0% |
| ! | ACATACGGTTGATTCTTCCA+TGG | - | chr4_3:65755085-65755104 | None:intergenic | 40.0% |
| AAGAAGAGGGCTTAAACTCT+AGG | + | chr4_3:65755392-65755411 | Msa0656450:exon | 40.0% | |
| TATTGCTGCCTTGTACTCTT+AGG | + | chr4_3:65755421-65755440 | Msa0656450:three_prime_UTR | 40.0% | |
| ! | TGACAAGACCTAAGAGTACA+AGG | - | chr4_3:65755432-65755451 | None:intergenic | 40.0% |
| AGCAGGAATGAAGTGAGGTA+TGG | - | chr4_3:65752059-65752078 | None:intergenic | 45.0% | |
| GCCCTCTATCGTTTATTTGC+AGG | + | chr4_3:65752083-65752102 | Msa0656450:CDS | 45.0% | |
| GAAGGAAAAAAGCTGGGGTA+TGG | + | chr4_3:65752841-65752860 | Msa0656450:intron | 45.0% | |
| ! | TTACAAGAGGCATGTTCCCT+TGG | - | chr4_3:65752869-65752888 | None:intergenic | 45.0% |
| ! | TGTTTCAAGTAGCCTCCTAG+TGG | + | chr4_3:65753272-65753291 | Msa0656450:intron | 45.0% |
| !! | TACGGGTGGACTGTTCATAT+AGG | - | chr4_3:65753543-65753562 | None:intergenic | 45.0% |
| TGGACCCTCTTGTTAAACTC+AGG | + | chr4_3:65753747-65753766 | Msa0656450:intron | 45.0% | |
| GGACCCTCTTGTTAAACTCA+GGG | + | chr4_3:65753748-65753767 | Msa0656450:intron | 45.0% | |
| ATATCCCTGAATGTTACGGG+TGG | - | chr4_3:65753954-65753973 | None:intergenic | 45.0% | |
| CAACTAGGCCATTAAGAAGG+TGG | - | chr4_3:65754179-65754198 | None:intergenic | 45.0% | |
| TCTATATCGAGCAGTCCTCT+CGG | + | chr4_3:65754336-65754355 | Msa0656450:intron | 45.0% | |
| !!! | GTACCTTTTAGCCTTGGTCA+AGG | - | chr4_3:65754708-65754727 | None:intergenic | 45.0% |
| !! | GACCAAGGCTAAAAGGTACT+TGG | + | chr4_3:65754709-65754728 | Msa0656450:CDS | 45.0% |
| AGACGTTCTTGCACACAAAC+AGG | + | chr4_3:65754733-65754752 | Msa0656450:CDS | 45.0% | |
| ! | AGAGTGTCTATTCTTGGCCT+GGG | - | chr4_3:65754801-65754820 | None:intergenic | 45.0% |
| ! | TAGAGTGTCTATTCTTGGCC+TGG | - | chr4_3:65754802-65754821 | None:intergenic | 45.0% |
| ! | GACACTCTAATGGACAAGGA+AGG | + | chr4_3:65754813-65754832 | Msa0656450:CDS | 45.0% |
| ! | ACTCTAATGGACAAGGAAGG+TGG | + | chr4_3:65754816-65754835 | Msa0656450:CDS | 45.0% |
| CAAGTCAGCGAAGTTTATCC+TGG | + | chr4_3:65754844-65754863 | Msa0656450:CDS | 45.0% | |
| CTGCATTCTTCAGCAAATCC+AGG | - | chr4_3:65754865-65754884 | None:intergenic | 45.0% | |
| GCTTCTGTGCTTGATTGACT+TGG | - | chr4_3:65755040-65755059 | None:intergenic | 45.0% | |
| !! | TAATTAATAATTGATATATT+TGG | + | chr4_3:65753474-65753493 | Msa0656450:intron | 5.0% |
| CTGAGAGCAGGAATGAAGTG+AGG | - | chr4_3:65752064-65752083 | None:intergenic | 50.0% | |
| TGACAATGACTAGGGCCGTT+TGG | - | chr4_3:65752729-65752748 | None:intergenic | 50.0% | |
| AAAGCTGGGGTATGGTACCA+AGG | + | chr4_3:65752849-65752868 | Msa0656450:intron | 50.0% | |
| AAGCTGGGGTATGGTACCAA+GGG | + | chr4_3:65752850-65752869 | Msa0656450:intron | 50.0% | |
| !! | TACGGGTGGACTGCTCATAT+AGG | - | chr4_3:65752920-65752939 | None:intergenic | 50.0% |
| ATATCCCTGAAGGTTACGGG+TGG | - | chr4_3:65752934-65752953 | None:intergenic | 50.0% | |
| TAGCCAGGAACTATGCCACT+AGG | - | chr4_3:65753290-65753309 | None:intergenic | 50.0% | |
| ! | GAGTGTTTCAAGTAGCCTCC+TGG | + | chr4_3:65753269-65753288 | Msa0656450:intron | 50.0% |
| ! | TGTTTCAAGTAGCCTCCTGG+TGG | + | chr4_3:65753374-65753393 | Msa0656450:intron | 50.0% |
| ATATCCCTGAAGGTTACGGG+TGG | - | chr4_3:65752934-65752953 | None:intergenic | 50.0% | |
| TGCCCTTGACCAAGGCTAAA+AGG | + | chr4_3:65754702-65754721 | Msa0656450:CDS | 50.0% | |
| CCACGACAGAAACGTCTGAA+TGG | - | chr4_3:65754764-65754783 | None:intergenic | 50.0% | |
| CCATTCAGACGTTTCTGTCG+TGG | + | chr4_3:65754761-65754780 | Msa0656450:CDS | 50.0% | |
| AGACGTTTCTGTCGTGGTGT+TGG | + | chr4_3:65754767-65754786 | Msa0656450:CDS | 50.0% | |
| GACGTTTCTGTCGTGGTGTT+GGG | + | chr4_3:65754768-65754787 | Msa0656450:CDS | 50.0% | |
| ! | GGCGGTTCAGAAAGAGGTAT+TGG | + | chr4_3:65755251-65755270 | Msa0656450:intron | 50.0% |
| ! | CTTCTTGCTTGCTGCCAACT+GGG | - | chr4_3:65755378-65755397 | None:intergenic | 50.0% |
| ! | TCTTCTTGCTTGCTGCCAAC+TGG | - | chr4_3:65755379-65755398 | None:intergenic | 50.0% |
| AGTTGGCAGCAAGCAAGAAG+AGG | + | chr4_3:65755378-65755397 | Msa0656450:CDS | 50.0% | |
| GTTGGCAGCAAGCAAGAAGA+GGG | + | chr4_3:65755379-65755398 | Msa0656450:CDS | 50.0% | |
| AACGATAGAGGGCTGAGAGC+AGG | - | chr4_3:65752076-65752095 | None:intergenic | 55.0% | |
| TCCATCAAACGCCGTCGTCA+TGG | + | chr4_3:65752107-65752126 | Msa0656450:CDS | 55.0% | |
| ACCATGACGACGGCGTTTGA+TGG | - | chr4_3:65752111-65752130 | None:intergenic | 55.0% | |
| CAGTCCACCCGTAACCTTCA+GGG | + | chr4_3:65752927-65752946 | Msa0656450:intron | 55.0% | |
| CCAGGAACTATGCCACTAGG+AGG | - | chr4_3:65753287-65753306 | None:intergenic | 55.0% | |
| CCTCCTAGTGGCATAGTTCC+TGG | + | chr4_3:65753284-65753303 | Msa0656450:intron | 55.0% | |
| TAGCCAGGAACTATGCCACC+AGG | - | chr4_3:65753392-65753411 | None:intergenic | 55.0% | |
| ACAGTCCACCCGTAACCTTC+AGG | + | chr4_3:65753549-65753568 | Msa0656450:intron | 55.0% | |
| CAGTCCACCCGTAACCTTCA+GGG | + | chr4_3:65752927-65752946 | Msa0656450:intron | 55.0% | |
| TACGGGTGGACGGCTCATAT+AGG | - | chr4_3:65753940-65753959 | None:intergenic | 55.0% | |
| CCCTGAATGTTACGGGTGGA+CGG | - | chr4_3:65753950-65753969 | None:intergenic | 55.0% | |
| CCGTCCACCCGTAACATTCA+GGG | + | chr4_3:65753947-65753966 | Msa0656450:intron | 55.0% | |
| GGGAAACTGCCTTTGCCATC+AGG | + | chr4_3:65754675-65754694 | Msa0656450:CDS | 55.0% | |
| GGGCAACTTCCTGATGGCAA+AGG | - | chr4_3:65754687-65754706 | None:intergenic | 55.0% | |
| GGTCAAGGGCAACTTCCTGA+TGG | - | chr4_3:65754693-65754712 | None:intergenic | 55.0% | |
| CAGGAAGTTGCCCTTGACCA+AGG | + | chr4_3:65754694-65754713 | Msa0656450:CDS | 55.0% | |
| ! | GTTTCTGTCGTGGTGTTGGG+AGG | + | chr4_3:65754771-65754790 | Msa0656450:CDS | 55.0% |
| CGCAGAACATACAGAGCCCA+TGG | + | chr4_3:65755065-65755084 | Msa0656450:CDS | 55.0% | |
| GGAAGAGGCGGTTCAGAAAG+AGG | + | chr4_3:65755245-65755264 | Msa0656450:CDS | 55.0% | |
| GCAGTCCACCCGTAACCTTC+AGG | + | chr4_3:65752926-65752945 | Msa0656450:intron | 60.0% | |
| CCAGGAACTATGCCACCAGG+AGG | - | chr4_3:65753389-65753408 | None:intergenic | 60.0% | |
| CCTCCTGGTGGCATAGTTCC+TGG | + | chr4_3:65753386-65753405 | Msa0656450:intron | 60.0% | |
| GCCGTCCACCCGTAACATTC+AGG | + | chr4_3:65753946-65753965 | Msa0656450:intron | 60.0% | |
| TTTCCAGCCGGAGTCCCAGT+TGG | + | chr4_3:65755361-65755380 | Msa0656450:intron | 60.0% | |
| CTTGCTGCCAACTGGGACTC+CGG | - | chr4_3:65755371-65755390 | None:intergenic | 60.0% | |
| CATGCAGCCACCAAGGCTCG+TGG | + | chr4_3:65752375-65752394 | Msa0656450:intron | 65.0% | |
| GTCAGCACCACGAGCCTTGG+TGG | - | chr4_3:65752385-65752404 | None:intergenic | 65.0% | |
| GAGGTCAGCACCACGAGCCT+TGG | - | chr4_3:65752388-65752407 | None:intergenic | 65.0% | |
| ! | TGGTGTTGGGAGGACAGCCC+AGG | + | chr4_3:65754781-65754800 | Msa0656450:CDS | 65.0% |
| CTGCCAACTGGGACTCCGGC+TGG | - | chr4_3:65755367-65755386 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 65752054 | 65755652 | 65752054 | ID=Msa0656450;Name=Msa0656450 |
| chr4_3 | mRNA | 65752054 | 65755652 | 65752054 | ID=Msa0656450-mRNA-1;Parent=Msa0656450;Name=Msa0656450-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|1|0.85|1|1|1|7|246|197 |
| chr4_3 | exon | 65752054 | 65752128 | 65752054 | ID=Msa0656450-mRNA-1:exon:18695;Parent=Msa0656450-mRNA-1 |
| chr4_3 | exon | 65752238 | 65752274 | 65752238 | ID=Msa0656450-mRNA-1:exon:18696;Parent=Msa0656450-mRNA-1 |
| chr4_3 | exon | 65752382 | 65752422 | 65752382 | ID=Msa0656450-mRNA-1:exon:18697;Parent=Msa0656450-mRNA-1 |
| chr4_3 | exon | 65754668 | 65754898 | 65754668 | ID=Msa0656450-mRNA-1:exon:18698;Parent=Msa0656450-mRNA-1 |
| chr4_3 | exon | 65754996 | 65755098 | 65754996 | ID=Msa0656450-mRNA-1:exon:18699;Parent=Msa0656450-mRNA-1 |
| chr4_3 | exon | 65755199 | 65755266 | 65755199 | ID=Msa0656450-mRNA-1:exon:18700;Parent=Msa0656450-mRNA-1 |
| chr4_3 | exon | 65755368 | 65755652 | 65755368 | ID=Msa0656450-mRNA-1:exon:18701;Parent=Msa0656450-mRNA-1 |
| chr4_3 | CDS | 65752054 | 65752128 | 65752054 | ID=Msa0656450-mRNA-1:cds;Parent=Msa0656450-mRNA-1 |
| chr4_3 | CDS | 65752238 | 65752274 | 65752238 | ID=Msa0656450-mRNA-1:cds;Parent=Msa0656450-mRNA-1 |
| chr4_3 | CDS | 65752382 | 65752422 | 65752382 | ID=Msa0656450-mRNA-1:cds;Parent=Msa0656450-mRNA-1 |
| chr4_3 | CDS | 65754668 | 65754898 | 65754668 | ID=Msa0656450-mRNA-1:cds;Parent=Msa0656450-mRNA-1 |
| chr4_3 | CDS | 65754996 | 65755098 | 65754996 | ID=Msa0656450-mRNA-1:cds;Parent=Msa0656450-mRNA-1 |
| chr4_3 | CDS | 65755199 | 65755266 | 65755199 | ID=Msa0656450-mRNA-1:cds;Parent=Msa0656450-mRNA-1 |
| chr4_3 | CDS | 65755368 | 65755406 | 65755368 | ID=Msa0656450-mRNA-1:cds;Parent=Msa0656450-mRNA-1 |
| chr4_3 | three_prime_UTR | 65755407 | 65755652 | 65755407 | ID=Msa0656450-mRNA-1:three_prime_utr;Parent=Msa0656450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
