Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864660 | XP_003617941.2 | 100.000 | 130 | 0 | 0 | 33 | 162 | 1 | 130 | 2.03e-89 | 266 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864660 | sp|P49206|RS261_ARATH | 83.621 | 116 | 19 | 0 | 33 | 148 | 1 | 116 | 1.19e-67 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864660 | Q9SWS9 | 100.000 | 130 | 0 | 0 | 33 | 162 | 1 | 130 | 9.69e-90 | 266 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0079560 | Msa0864660 | 0.811997 | 5.290849e-51 | -8.615850e-47 |
| Msa0656450 | Msa0864660 | 0.804690 | 1.914172e-49 | -8.615850e-47 |
| Msa0826610 | Msa0864660 | 0.998848 | 6.182160e-279 | -8.615850e-47 |
| Msa0127230 | Msa0864660 | 0.810277 | 1.248860e-50 | -8.615850e-47 |
| Msa0373350 | Msa0864660 | 0.837210 | 5.945048e-57 | -8.615850e-47 |
| Msa0421920 | Msa0864660 | 0.805478 | 1.309263e-49 | -8.615850e-47 |
| Msa0864660 | Msa1013430 | 0.820422 | 6.918744e-53 | -8.615850e-47 |
| Msa0864660 | Msa1130680 | 0.820689 | 6.007917e-53 | -8.615850e-47 |
| Msa0864660 | Msa1165700 | 0.802270 | 6.074476e-49 | -8.615850e-47 |
| Msa0864660 | Msa1413570 | 0.800692 | 1.279103e-48 | -8.615850e-47 |
| Msa0864660 | Msa1462580 | 0.828474 | 8.814107e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864660 | MtrunA17_Chr5g0447461 | 100.000 | 130 | 0 | 0 | 33 | 162 | 1 | 130 | 1.87e-93 | 266 |
| Msa0864660 | MtrunA17_Chr3g0128911 | 99.138 | 116 | 1 | 0 | 33 | 148 | 1 | 116 | 2.04e-82 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0864660 | AT2G40590.1 | 83.621 | 116 | 19 | 0 | 33 | 148 | 1 | 116 | 1.21e-68 | 204 |
| Msa0864660 | AT2G40510.1 | 83.621 | 116 | 19 | 0 | 33 | 148 | 1 | 116 | 1.80e-68 | 204 |
| Msa0864660 | AT3G56340.1 | 83.621 | 116 | 19 | 0 | 33 | 148 | 1 | 116 | 2.31e-68 | 203 |
Find 44 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTGTGATATTCATAATA+TGG | 0.273385 | 5_4:-65159693 | None:intergenic |
| GACCAGGCTGACCAGGCCTT+GGG | 0.278097 | 5_4:-65159414 | None:intergenic |
| CAATCAAGAGGTTTCTTGTT+AGG | 0.291662 | 5_4:+65157601 | Msa0864660:CDS |
| TGACCAGGCTGACCAGGCCT+TGG | 0.293734 | 5_4:-65159415 | None:intergenic |
| AGCTGCAGTTAGAGATGTTC+AGG | 0.305494 | 5_4:+65157638 | Msa0864660:CDS |
| GGTTCACAATATTAATAATA+TGG | 0.354275 | 5_4:-65159658 | None:intergenic |
| TTTGCTTGTTCGCGGCAGCT+AGG | 0.386901 | 5_4:-65157256 | None:intergenic |
| GGCGCTTGACCAGGCTGACC+AGG | 0.427155 | 5_4:-65159421 | None:intergenic |
| TAGACATTTAAGCGCAGAAA+TGG | 0.429840 | 5_4:+65157403 | Msa0864660:intron |
| GCCCCAAGGCCTGGTCAGCC+TGG | 0.433949 | 5_4:+65159412 | Msa0864660:CDS |
| TTTGGATTCATGTAGACAAA+AGG | 0.436476 | 5_4:+65159563 | Msa0864660:three_prime_UTR |
| GGAGCTCCTCCGGCTACAGC+AGG | 0.454172 | 5_4:-65159448 | None:intergenic |
| CTTTCTCCTTTGCTTGTTCG+CGG | 0.454429 | 5_4:-65157264 | None:intergenic |
| GCGCCTCGCCCTGCTGTAGC+CGG | 0.463568 | 5_4:+65159439 | Msa0864660:CDS |
| AAGGATGATGCCCCAAGGCC+TGG | 0.473726 | 5_4:+65159403 | Msa0864660:intron |
| ACCCTCCACAGCGTTTCATC+AGG | 0.473802 | 5_4:+65158183 | Msa0864660:CDS |
| GGGACAGCATTTACCACAGT+TGG | 0.475372 | 5_4:-65157473 | None:intergenic |
| GGCCACGACCATGTTTGTTA+CGG | 0.475572 | 5_4:-65157429 | None:intergenic |
| GCAGGGCGAGGCGCTTGACC+AGG | 0.476630 | 5_4:-65159430 | None:intergenic |
| GAGTTAGATCTCGCACTGAT+AGG | 0.485329 | 5_4:+65158150 | Msa0864660:CDS |
| CCTCCGGCTACAGCAGGGCG+AGG | 0.486107 | 5_4:-65159442 | None:intergenic |
| TTGCTTGTTCGCGGCAGCTA+GGG | 0.498142 | 5_4:-65157255 | None:intergenic |
| CGCCTGATGAAACGCTGTGG+AGG | 0.504436 | 5_4:-65158185 | None:intergenic |
| ATAATATGGTTGAAAAGCTA+AGG | 0.508278 | 5_4:-65159679 | None:intergenic |
| TAACTCTCACAACATGAGAA+TGG | 0.517819 | 5_4:-65158133 | None:intergenic |
| ACCAGGCTGACCAGGCCTTG+GGG | 0.531483 | 5_4:-65159413 | None:intergenic |
| CACAGCGTTTCATCAGGCGC+AGG | 0.535977 | 5_4:+65158189 | Msa0864660:CDS |
| TGCATCTTCACATACAGCTT+AGG | 0.540851 | 5_4:-65158089 | None:intergenic |
| TTCATTCGTTGCTCCAACTG+TGG | 0.541200 | 5_4:+65157460 | Msa0864660:CDS |
| CCTCGCCCTGCTGTAGCCGG+AGG | 0.543172 | 5_4:+65159442 | Msa0864660:CDS |
| TTAGATCTCGCACTGATAGG+AGG | 0.569205 | 5_4:+65158153 | Msa0864660:CDS |
| ACATTTAAGCGCAGAAATGG+AGG | 0.573713 | 5_4:+65157406 | Msa0864660:CDS |
| GGCCGTAACAAACATGGTCG+TGG | 0.575945 | 5_4:+65157427 | Msa0864660:CDS |
| GGTACGGACAGGAGCTCCTC+CGG | 0.581569 | 5_4:-65159458 | None:intergenic |
| TAGCTGCCGCGAACAAGCAA+AGG | 0.587907 | 5_4:+65157258 | Msa0864660:CDS |
| GCCTGATGAAACGCTGTGGA+GGG | 0.592960 | 5_4:-65158184 | None:intergenic |
| AATGGAGGCCGTAACAAACA+TGG | 0.615814 | 5_4:+65157421 | Msa0864660:CDS |
| CTGTGGTAAATGCTGTCCCA+AGG | 0.625759 | 5_4:+65157477 | Msa0864660:CDS |
| GAGCTCCTCCGGCTACAGCA+GGG | 0.629074 | 5_4:-65159447 | None:intergenic |
| ACAGCGTTTCATCAGGCGCA+GGG | 0.646586 | 5_4:+65158190 | Msa0864660:CDS |
| ACAAGCAAAGGAGAAAGCAA+AGG | 0.652515 | 5_4:+65157270 | Msa0864660:CDS |
| AGCAACGAATGAATTTGACA+TGG | 0.665067 | 5_4:-65157450 | None:intergenic |
| AACAGGACAAGGCAATCAAG+AGG | 0.667211 | 5_4:+65157589 | Msa0864660:intron |
| CTGCGCCTGATGAAACGCTG+TGG | 0.679468 | 5_4:-65158188 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTGTTTTTTTTTTTTTTTT+TGG | + | chr5_4:65158037-65158056 | Msa0864660:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTTGGT+TGG | + | chr5_4:65158041-65158060 | Msa0864660:intron | 10.0% |
| !!! | TTTGTTTATTTCTTTTTTAA+AGG | + | chr5_4:65159384-65159403 | Msa0864660:intron | 10.0% |
| !!! | AAATTTTTAAAAACAAGAAA+CGG | - | chr5_4:65159545-65159564 | None:intergenic | 10.0% |
| !!! | TTTCTTGTTTTTAAAAATTT+TGG | + | chr5_4:65159545-65159564 | Msa0864660:three_prime_UTR | 10.0% |
| !! | AAAAAAACAGAAAAATCTTA+CGG | - | chr5_4:65157680-65157699 | None:intergenic | 15.0% |
| !!! | TTTTTATTAGATAGATTTCT+AGG | - | chr5_4:65158816-65158835 | None:intergenic | 15.0% |
| !! | CAGCAAAATATATAATTATA+AGG | - | chr5_4:65159339-65159358 | None:intergenic | 15.0% |
| !!! | TTCTTGTCATTAATATTTTA+TGG | + | chr5_4:65159613-65159632 | Msa0864660:three_prime_UTR | 15.0% |
| !!! | TCATTAATATTTTATGGTTT+TGG | + | chr5_4:65159619-65159638 | Msa0864660:three_prime_UTR | 15.0% |
| !! | AAATTGTGATATTCATAATA+TGG | - | chr5_4:65159696-65159715 | None:intergenic | 15.0% |
| !!! | AATTTTCCAAATACACATTA+TGG | + | chr5_4:65157715-65157734 | Msa0864660:intron | 20.0% |
| !!! | ATTTTCCAAATACACATTAT+GGG | + | chr5_4:65157716-65157735 | Msa0864660:intron | 20.0% |
| !!! | AAAGGATTTGAAATTTATGT+AGG | - | chr5_4:65157972-65157991 | None:intergenic | 20.0% |
| !! | ATAAATTTCAAATCCTTTGT+AGG | + | chr5_4:65157974-65157993 | Msa0864660:intron | 20.0% |
| !! | TAAATTTCAAATCCTTTGTA+GGG | + | chr5_4:65157975-65157994 | Msa0864660:intron | 20.0% |
| !! | AAAAAAAACAGAATCAGTTA+AGG | - | chr5_4:65158029-65158048 | None:intergenic | 20.0% |
| !! | TCTTAAGTTAATAAAACACA+TGG | + | chr5_4:65158341-65158360 | Msa0864660:intron | 20.0% |
| !!! | GATTTAGATTTTTCATATAG+TGG | + | chr5_4:65158474-65158493 | Msa0864660:intron | 20.0% |
| !!! | GGCTAAATTTTATTTAATAC+AGG | - | chr5_4:65159114-65159133 | None:intergenic | 20.0% |
| !!! | ATTTTGCTGTTTATTTTAGT+TGG | + | chr5_4:65159350-65159369 | Msa0864660:intron | 20.0% |
| !! | GGTTCACAATATTAATAATA+TGG | - | chr5_4:65159661-65159680 | None:intergenic | 20.0% |
| !!! | TTTTGTTTTTGTTTGTGAAC+AGG | + | chr5_4:65157572-65157591 | Msa0864660:intron | 25.0% |
| ! | GTGTATTTGGAAAATTACAT+GGG | - | chr5_4:65157711-65157730 | None:intergenic | 25.0% |
| ! | TGTGTATTTGGAAAATTACA+TGG | - | chr5_4:65157712-65157731 | None:intergenic | 25.0% |
| ! | AAAAACATGAAAACTGAAAG+AGG | - | chr5_4:65158234-65158253 | None:intergenic | 25.0% |
| !!! | TCATGTTTTTGTTACTAACT+AGG | + | chr5_4:65158244-65158263 | Msa0864660:intron | 25.0% |
| !! | ACTTTTGATACTTGAAACTT+TGG | + | chr5_4:65158415-65158434 | Msa0864660:intron | 25.0% |
| ! | ATACTTTAGGTACTAAATTG+CGG | - | chr5_4:65158555-65158574 | None:intergenic | 25.0% |
| ! | AATAGTGTTGTATCTAATTC+CGG | - | chr5_4:65158620-65158639 | None:intergenic | 25.0% |
| ! | TATAACAGAAACAGAAAGTA+AGG | - | chr5_4:65158856-65158875 | None:intergenic | 25.0% |
| ! | AAATGTATCACAAATTTACG+AGG | + | chr5_4:65159068-65159087 | Msa0864660:intron | 25.0% |
| !!! | TTGAAATTTGCTTTTAGGTA+CGG | - | chr5_4:65159477-65159496 | None:intergenic | 25.0% |
| ! | TAAAAACAAGAAACGGAAAT+TGG | - | chr5_4:65159538-65159557 | None:intergenic | 25.0% |
| ! | ATAATATGGTTGAAAAGCTA+AGG | - | chr5_4:65159682-65159701 | None:intergenic | 25.0% |
| !! | TTTGAGATTTTCAGCAACAA+TGG | + | chr5_4:65157294-65157313 | Msa0864660:CDS | 30.0% |
| TCTCTGATCTATTCATTTCT+CGG | + | chr5_4:65157349-65157368 | Msa0864660:intron | 30.0% | |
| ATGACAAAGTGAAATACCTT+GGG | - | chr5_4:65157496-65157515 | None:intergenic | 30.0% | |
| AATGACAAAGTGAAATACCT+TGG | - | chr5_4:65157497-65157516 | None:intergenic | 30.0% | |
| TTCATTTCATAAGCTTGTCT+AGG | + | chr5_4:65157811-65157830 | Msa0864660:intron | 30.0% | |
| TTTCATAAGCTCAATCTGAA+TGG | + | chr5_4:65157945-65157964 | Msa0864660:intron | 30.0% | |
| TTCATAAGCTCAATCTGAAT+GGG | + | chr5_4:65157946-65157965 | Msa0864660:intron | 30.0% | |
| ATTGCCTATGAAATTGTGTA+TGG | + | chr5_4:65158278-65158297 | Msa0864660:intron | 30.0% | |
| GCATAACAAAGACATAAGAA+TGG | - | chr5_4:65158377-65158396 | None:intergenic | 30.0% | |
| CAGCAATTTGACAATACTTT+AGG | - | chr5_4:65158568-65158587 | None:intergenic | 30.0% | |
| TCTATAGCACTATATCATAC+CGG | + | chr5_4:65158598-65158617 | Msa0864660:intron | 30.0% | |
| TAACACAATGATGTCAAATG+TGG | - | chr5_4:65158652-65158671 | None:intergenic | 30.0% | |
| GATGACATACTACATTGAAA+AGG | - | chr5_4:65158722-65158741 | None:intergenic | 30.0% | |
| TGAACGCACATTATTTGAAT+AGG | + | chr5_4:65158749-65158768 | Msa0864660:intron | 30.0% | |
| ! | GATTTGATAGATGGAGTATT+AGG | - | chr5_4:65158782-65158801 | None:intergenic | 30.0% |
| ! | CAAGTTTAGGATTTGATAGA+TGG | - | chr5_4:65158791-65158810 | None:intergenic | 30.0% |
| ! | AGATTTCTAGGAACAAGTTT+AGG | - | chr5_4:65158804-65158823 | None:intergenic | 30.0% |
| !! | TTAGTTTGCTTTACATAGTG+TGG | + | chr5_4:65158919-65158938 | Msa0864660:intron | 30.0% |
| ACGGTTTATCAGATCTTATA+TGG | + | chr5_4:65159018-65159037 | Msa0864660:intron | 30.0% | |
| CATTGCAAACCAAAATGAAA+AGG | + | chr5_4:65159137-65159156 | Msa0864660:intron | 30.0% | |
| TTTGTGAACCAAACAAAGAT+AGG | + | chr5_4:65159194-65159213 | Msa0864660:intron | 30.0% | |
| GGACTTAATTAGATATTGCT+TGG | - | chr5_4:65159229-65159248 | None:intergenic | 30.0% | |
| ATTGAAATACGGAGAAAGTA+TGG | - | chr5_4:65159273-65159292 | None:intergenic | 30.0% | |
| AATCCAGACTCATTGAAATA+CGG | - | chr5_4:65159284-65159303 | None:intergenic | 30.0% | |
| TATTTCAATGAGTCTGGATT+TGG | + | chr5_4:65159284-65159303 | Msa0864660:intron | 30.0% | |
| !! | AGCTCTTGAAATTTGCTTTT+AGG | - | chr5_4:65159482-65159501 | None:intergenic | 30.0% |
| !!! | GAGCTTTTGTAGTTTTGAAT+CGG | + | chr5_4:65159497-65159516 | Msa0864660:three_prime_UTR | 30.0% |
| TTTGGATTCATGTAGACAAA+AGG | + | chr5_4:65159563-65159582 | Msa0864660:three_prime_UTR | 30.0% | |
| TAGACATTTAAGCGCAGAAA+TGG | + | chr5_4:65157403-65157422 | Msa0864660:intron | 35.0% | |
| AGCAACGAATGAATTTGACA+TGG | - | chr5_4:65157453-65157472 | None:intergenic | 35.0% | |
| !! | TTTTGTTTGTGAACAGGACA+AGG | + | chr5_4:65157578-65157597 | Msa0864660:intron | 35.0% |
| CAATCAAGAGGTTTCTTGTT+AGG | + | chr5_4:65157601-65157620 | Msa0864660:CDS | 35.0% | |
| ACAGACCCATAATGTGTATT+TGG | - | chr5_4:65157724-65157743 | None:intergenic | 35.0% | |
| ATACACATTATGGGTCTGTT+TGG | + | chr5_4:65157725-65157744 | Msa0864660:intron | 35.0% | |
| ! | AAAAACACACAAGCTAGTCT+AGG | + | chr5_4:65157844-65157863 | Msa0864660:intron | 35.0% |
| AATCACGATAAACCCTACAA+AGG | - | chr5_4:65157990-65158009 | None:intergenic | 35.0% | |
| TAACTCTCACAACATGAGAA+TGG | - | chr5_4:65158136-65158155 | None:intergenic | 35.0% | |
| GTCTCCATACACAATTTCAT+AGG | - | chr5_4:65158285-65158304 | None:intergenic | 35.0% | |
| ! | TTGTCAAATTGCTGTTATCG+CGG | + | chr5_4:65158574-65158593 | Msa0864660:intron | 35.0% |
| ACATACTACATTGAAAAGGC+AGG | - | chr5_4:65158718-65158737 | None:intergenic | 35.0% | |
| TTTGCTTTACATAGTGTGGT+TGG | + | chr5_4:65158923-65158942 | Msa0864660:intron | 35.0% | |
| !!! | TCATTTTGGTTTGCAATGAG+AGG | - | chr5_4:65159135-65159154 | None:intergenic | 35.0% |
| ! | GGAGAATAGCCTTTTCATTT+TGG | - | chr5_4:65159149-65159168 | None:intergenic | 35.0% |
| ! | TTTGGTTCACAAAGAGGATA+GGG | - | chr5_4:65159187-65159206 | None:intergenic | 35.0% |
| ! | TCTTTGTTTGGTTCACAAAG+AGG | - | chr5_4:65159193-65159212 | None:intergenic | 35.0% |
| ! | AAAGTATGGATGGGTTTGAT+TGG | - | chr5_4:65159259-65159278 | None:intergenic | 35.0% |
| ! | AATACGGAGAAAGTATGGAT+GGG | - | chr5_4:65159268-65159287 | None:intergenic | 35.0% |
| ! | AAATACGGAGAAAGTATGGA+TGG | - | chr5_4:65159269-65159288 | None:intergenic | 35.0% |
| ACAAGCAAAGGAGAAAGCAA+AGG | + | chr5_4:65157270-65157289 | Msa0864660:CDS | 40.0% | |
| ACATTTAAGCGCAGAAATGG+AGG | + | chr5_4:65157406-65157425 | Msa0864660:CDS | 40.0% | |
| TGCATCTTCACATACAGCTT+AGG | - | chr5_4:65158092-65158111 | None:intergenic | 40.0% | |
| GTTGCTTGAGTGTATATCAG+TGG | + | chr5_4:65158886-65158905 | Msa0864660:intron | 40.0% | |
| TTTACATAGTGTGGTTGGAG+TGG | + | chr5_4:65158928-65158947 | Msa0864660:intron | 40.0% | |
| TTACATAGTGTGGTTGGAGT+GGG | + | chr5_4:65158929-65158948 | Msa0864660:intron | 40.0% | |
| ACAAAACCCCCAATATAGGA+GGG | - | chr5_4:65158989-65159008 | None:intergenic | 40.0% | |
| TACAAAACCCCCAATATAGG+AGG | - | chr5_4:65158990-65159009 | None:intergenic | 40.0% | |
| !! | TCCTATATTGGGGGTTTTGT+AGG | + | chr5_4:65158989-65159008 | Msa0864660:intron | 40.0% |
| TCCTACAAAACCCCCAATAT+AGG | - | chr5_4:65158993-65159012 | None:intergenic | 40.0% | |
| ATAGGGGAAATTAATCGACG+GGG | - | chr5_4:65159170-65159189 | None:intergenic | 40.0% | |
| GATAGGGGAAATTAATCGAC+GGG | - | chr5_4:65159171-65159190 | None:intergenic | 40.0% | |
| GGATAGGGGAAATTAATCGA+CGG | - | chr5_4:65159172-65159191 | None:intergenic | 40.0% | |
| TTGGTTCACAAAGAGGATAG+GGG | - | chr5_4:65159186-65159205 | None:intergenic | 40.0% | |
| ! | GTTTGGTTCACAAAGAGGAT+AGG | - | chr5_4:65159188-65159207 | None:intergenic | 40.0% |
| TCACAGAGCCTATCTTTGTT+TGG | - | chr5_4:65159205-65159224 | None:intergenic | 40.0% | |
| ! | TATGGATGGGTTTGATTGGA+GGG | - | chr5_4:65159255-65159274 | None:intergenic | 40.0% |
| TCTCCGTATTTCAATGAGTC+TGG | + | chr5_4:65159278-65159297 | Msa0864660:intron | 40.0% | |
| TTCAATGAGTCTGGATTTGG+TGG | + | chr5_4:65159287-65159306 | Msa0864660:intron | 40.0% | |
| !! | TTTTAAAGGATGATGCCCCA+AGG | + | chr5_4:65159398-65159417 | Msa0864660:intron | 40.0% |
| !! | ATTTGCTTTTAGGTACGGAC+AGG | - | chr5_4:65159472-65159491 | None:intergenic | 40.0% |
| CTTTCTCCTTTGCTTGTTCG+CGG | - | chr5_4:65157267-65157286 | None:intergenic | 45.0% | |
| AATGGAGGCCGTAACAAACA+TGG | + | chr5_4:65157421-65157440 | Msa0864660:CDS | 45.0% | |
| TTCATTCGTTGCTCCAACTG+TGG | + | chr5_4:65157460-65157479 | Msa0864660:CDS | 45.0% | |
| AACAGGACAAGGCAATCAAG+AGG | + | chr5_4:65157589-65157608 | Msa0864660:intron | 45.0% | |
| AGCTGCAGTTAGAGATGTTC+AGG | + | chr5_4:65157638-65157657 | Msa0864660:CDS | 45.0% | |
| ! | GAGTTAGATCTCGCACTGAT+AGG | + | chr5_4:65158150-65158169 | Msa0864660:CDS | 45.0% |
| ! | TTAGATCTCGCACTGATAGG+AGG | + | chr5_4:65158153-65158172 | Msa0864660:CDS | 45.0% |
| TAAACGACACAGCAGTGCAA+AGG | - | chr5_4:65158454-65158473 | None:intergenic | 45.0% | |
| TACATAGTGTGGTTGGAGTG+GGG | + | chr5_4:65158930-65158949 | Msa0864660:intron | 45.0% | |
| CAAAACCCCCAATATAGGAG+GGG | - | chr5_4:65158988-65159007 | None:intergenic | 45.0% | |
| ! | ATGGATGGGTTTGATTGGAG+GGG | - | chr5_4:65159254-65159273 | None:intergenic | 45.0% |
| ! | GTATGGATGGGTTTGATTGG+AGG | - | chr5_4:65159256-65159275 | None:intergenic | 45.0% |
| ! | GGCCACGACCATGTTTGTTA+CGG | - | chr5_4:65157432-65157451 | None:intergenic | 50.0% |
| GGGACAGCATTTACCACAGT+TGG | - | chr5_4:65157476-65157495 | None:intergenic | 50.0% | |
| CTGTGGTAAATGCTGTCCCA+AGG | + | chr5_4:65157477-65157496 | Msa0864660:CDS | 50.0% | |
| ACATAGTGTGGTTGGAGTGG+GGG | + | chr5_4:65158931-65158950 | Msa0864660:intron | 50.0% | |
| GAGCAGGAATTGAGTAGGGA+AGG | - | chr5_4:65158966-65158985 | None:intergenic | 50.0% | |
| AGGGGAGCAGGAATTGAGTA+GGG | - | chr5_4:65158970-65158989 | None:intergenic | 50.0% | |
| TTCCTGCTCCCCTCCTATAT+TGG | + | chr5_4:65158977-65158996 | Msa0864660:intron | 50.0% | |
| TCCTGCTCCCCTCCTATATT+GGG | + | chr5_4:65158978-65158997 | Msa0864660:intron | 50.0% | |
| !! | GGGGTTTTGTAGGAGAGCAA+CGG | + | chr5_4:65158999-65159018 | Msa0864660:intron | 50.0% |
| ATGGGTTTGATTGGAGGGGA+TGG | - | chr5_4:65159250-65159269 | None:intergenic | 50.0% | |
| TTGCTTGTTCGCGGCAGCTA+GGG | - | chr5_4:65157258-65157277 | None:intergenic | 55.0% | |
| TTTGCTTGTTCGCGGCAGCT+AGG | - | chr5_4:65157259-65157278 | None:intergenic | 55.0% | |
| TAGCTGCCGCGAACAAGCAA+AGG | + | chr5_4:65157258-65157277 | Msa0864660:CDS | 55.0% | |
| GGCCGTAACAAACATGGTCG+TGG | + | chr5_4:65157427-65157446 | Msa0864660:CDS | 55.0% | |
| ACCCTCCACAGCGTTTCATC+AGG | + | chr5_4:65158183-65158202 | Msa0864660:CDS | 55.0% | |
| GCCTGATGAAACGCTGTGGA+GGG | - | chr5_4:65158187-65158206 | None:intergenic | 55.0% | |
| ACAGCGTTTCATCAGGCGCA+GGG | + | chr5_4:65158190-65158209 | Msa0864660:CDS | 55.0% | |
| CATAGTGTGGTTGGAGTGGG+GGG | + | chr5_4:65158932-65158951 | Msa0864660:intron | 55.0% | |
| GAGGGGAGCAGGAATTGAGT+AGG | - | chr5_4:65158971-65158990 | None:intergenic | 55.0% | |
| CCTGCTCCCCTCCTATATTG+GGG | + | chr5_4:65158979-65158998 | Msa0864660:intron | 55.0% | |
| CTGCTCCCCTCCTATATTGG+GGG | + | chr5_4:65158980-65158999 | Msa0864660:intron | 55.0% | |
| CGCCTGATGAAACGCTGTGG+AGG | - | chr5_4:65158188-65158207 | None:intergenic | 60.0% | |
| CTGCGCCTGATGAAACGCTG+TGG | - | chr5_4:65158191-65158210 | None:intergenic | 60.0% | |
| CACAGCGTTTCATCAGGCGC+AGG | + | chr5_4:65158189-65158208 | Msa0864660:CDS | 60.0% | |
| CCCCAATATAGGAGGGGAGC+AGG | - | chr5_4:65158982-65159001 | None:intergenic | 60.0% | |
| AAGGATGATGCCCCAAGGCC+TGG | + | chr5_4:65159403-65159422 | Msa0864660:intron | 60.0% | |
| ACCAGGCTGACCAGGCCTTG+GGG | - | chr5_4:65159416-65159435 | None:intergenic | 65.0% | |
| GACCAGGCTGACCAGGCCTT+GGG | - | chr5_4:65159417-65159436 | None:intergenic | 65.0% | |
| TGACCAGGCTGACCAGGCCT+TGG | - | chr5_4:65159418-65159437 | None:intergenic | 65.0% | |
| GAGCTCCTCCGGCTACAGCA+GGG | - | chr5_4:65159450-65159469 | None:intergenic | 65.0% | |
| GGTACGGACAGGAGCTCCTC+CGG | - | chr5_4:65159461-65159480 | None:intergenic | 65.0% | |
| GGCGCTTGACCAGGCTGACC+AGG | - | chr5_4:65159424-65159443 | None:intergenic | 70.0% | |
| GGAGCTCCTCCGGCTACAGC+AGG | - | chr5_4:65159451-65159470 | None:intergenic | 70.0% | |
| GCCCCAAGGCCTGGTCAGCC+TGG | + | chr5_4:65159412-65159431 | Msa0864660:CDS | 75.0% | |
| ! | GCAGGGCGAGGCGCTTGACC+AGG | - | chr5_4:65159433-65159452 | None:intergenic | 75.0% |
| GCGCCTCGCCCTGCTGTAGC+CGG | + | chr5_4:65159439-65159458 | Msa0864660:CDS | 75.0% | |
| CCTCCGGCTACAGCAGGGCG+AGG | - | chr5_4:65159445-65159464 | None:intergenic | 75.0% | |
| CCTCGCCCTGCTGTAGCCGG+AGG | + | chr5_4:65159442-65159461 | Msa0864660:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 65157217 | 65159722 | 65157217 | ID=Msa0864660;Name=Msa0864660 |
| chr5_4 | mRNA | 65157217 | 65159722 | 65157217 | ID=Msa0864660-mRNA-1;Parent=Msa0864660;Name=Msa0864660-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.8|1|1|1|5|239|162 |
| chr5_4 | exon | 65157217 | 65157315 | 65157217 | ID=Msa0864660-mRNA-1:exon:20530;Parent=Msa0864660-mRNA-1 |
| chr5_4 | exon | 65157406 | 65157498 | 65157406 | ID=Msa0864660-mRNA-1:exon:20531;Parent=Msa0864660-mRNA-1 |
| chr5_4 | exon | 65157594 | 65157678 | 65157594 | ID=Msa0864660-mRNA-1:exon:20532;Parent=Msa0864660-mRNA-1 |
| chr5_4 | exon | 65158078 | 65158211 | 65158078 | ID=Msa0864660-mRNA-1:exon:20533;Parent=Msa0864660-mRNA-1 |
| chr5_4 | exon | 65159406 | 65159722 | 65159406 | ID=Msa0864660-mRNA-1:exon:20534;Parent=Msa0864660-mRNA-1 |
| chr5_4 | CDS | 65157217 | 65157315 | 65157217 | ID=Msa0864660-mRNA-1:cds;Parent=Msa0864660-mRNA-1 |
| chr5_4 | CDS | 65157406 | 65157498 | 65157406 | ID=Msa0864660-mRNA-1:cds;Parent=Msa0864660-mRNA-1 |
| chr5_4 | CDS | 65157594 | 65157678 | 65157594 | ID=Msa0864660-mRNA-1:cds;Parent=Msa0864660-mRNA-1 |
| chr5_4 | CDS | 65158078 | 65158211 | 65158078 | ID=Msa0864660-mRNA-1:cds;Parent=Msa0864660-mRNA-1 |
| chr5_4 | CDS | 65159406 | 65159483 | 65159406 | ID=Msa0864660-mRNA-1:cds;Parent=Msa0864660-mRNA-1 |
| chr5_4 | three_prime_UTR | 65159484 | 65159722 | 65159484 | ID=Msa0864660-mRNA-1:three_prime_utr;Parent=Msa0864660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
