AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1462580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462580 MtrunA17_Chr6g0458031 100.000 191 0 0 1 191 1 191 3.75e-139 385
Msa1462580 MtrunA17_Chr6g0484891 99.476 191 1 0 1 191 1 191 5.94e-139 385
Msa1462580 MtrunA17_Chr8g0379651 68.182 44 6 1 145 188 51 86 7.95e-13 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462580 AT1G48830.1 81.152 191 36 0 1 191 1 191 3.54e-116 328
Msa1462580 AT1G48830.2 81.152 191 36 0 1 191 1 191 3.54e-116 328
Msa1462580 AT3G02560.1 80.628 191 37 0 1 191 1 191 1.14e-113 322
Msa1462580 AT3G02560.3 80.628 191 37 0 1 191 1 191 1.14e-113 322
Msa1462580 AT3G02560.2 80.628 191 37 0 1 191 1 191 1.14e-113 322
Msa1462580 AT5G16130.1 81.383 188 35 0 1 188 1 188 3.06e-113 320

Find 68 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCAAGTTGCCTTTGATTC+TGG 0.180217 tig0042421:+2425 Msa1462580:three_prime_UTR
TCGGTATTGTTTCTCTCCTT+TGG 0.252124 tig0042421:-2244 Msa1462580:intergenic
TACAGCCAAGTCGATGTTTC+TGG 0.252974 tig0042421:+1250 Msa1462580:intron
AGACATTCTCCGCTGTTTAC+AGG 0.270663 tig0042421:+2278 Msa1462580:CDS
AATCCCTTCCTCAATCTATA+TGG 0.283281 tig0042421:-1301 Msa1462580:intergenic
CGGTATTGTTTCTCTCCTTT+GGG 0.288337 tig0042421:-2243 Msa1462580:intergenic
AAATCCATGTCAGGCTTGTT+AGG 0.290791 tig0042421:+1329 Msa1462580:CDS
CGTTACCGAGGCTTAGGTTT+AGG 0.291617 tig0042421:+2336 Msa1462580:exon
TGAGCAGCAGAACCTTTCTT+TGG 0.335211 tig0042421:-1960 Msa1462580:intergenic
TGAGTTCTAACTTTGCATAT+AGG 0.379156 tig0042421:+895 Msa1462580:five_prime_UTR
CGCACTAGGTACCGAGTTGA+TGG 0.381805 tig0042421:+2065 Msa1462580:CDS
CAATCCTCCTGGTGGCAATC+AGG 0.404585 tig0042421:-1929 Msa1462580:intergenic
TAAACCTAAGCCTCGGTAAC+GGG 0.413315 tig0042421:-2334 Msa1462580:intergenic
GAATGTCTCCAACTTGTATT+CGG 0.427405 tig0042421:-2263 Msa1462580:intergenic
GTATCCCGTTACCGAGGCTT+AGG 0.429310 tig0042421:+2330 Msa1462580:CDS
TGCTGAGCCAACTGAATTTG+AGG 0.451294 tig0042421:+963 Msa1462580:CDS
ACCAAATACTGAAGAAAACT+TGG 0.456683 tig0042421:-2546 Msa1462580:intergenic
GCAGCAGAACCTTTCTTTGG+AGG 0.467834 tig0042421:-1957 Msa1462580:intergenic
CTTCAGTATTTGGTCTGGAA+TGG 0.476759 tig0042421:+2555 Msa1462580:three_prime_UTR
ATCCCTTCCTCAATCTATAT+GGG 0.481881 tig0042421:-1300 Msa1462580:intergenic
TTTGTTTCATGAATTGCATA+TGG 0.488047 tig0042421:+2379 Msa1462580:three_prime_UTR
GTGTTACCTGCCGAGATTGT+TGG 0.493817 tig0042421:+2038 Msa1462580:CDS
GCTGTTTACAGGAAACTATC+TGG 0.499187 tig0042421:+2289 Msa1462580:CDS
AAAACTTGGAAATAAGCAAA+TGG 0.501770 tig0042421:-2532 Msa1462580:intergenic
AGCAGTAAGTGTACGGCTAC+GGG 0.503167 tig0042421:-1988 Msa1462580:intergenic
TTCTGGCAACCGCAAGGCTG+TGG 0.507229 tig0042421:+1267 Msa1462580:CDS
AGATTGTTGGCAAGCGCACT+AGG 0.510306 tig0042421:+2051 Msa1462580:CDS
AATCCATGTCAGGCTTGTTA+GGG 0.511974 tig0042421:+1330 Msa1462580:CDS
ATTGTTCGTCCTCCAAAGAA+AGG 0.515996 tig0042421:+1948 Msa1462580:CDS
GATTCCGCAAAATCCATGTC+AGG 0.518236 tig0042421:+1320 Msa1462580:CDS
ACTGAATTTGAGGAATCTGT+TGG 0.520304 tig0042421:+973 Msa1462580:CDS
ATTTGAGGAATCTGTTGGAC+AGG 0.525688 tig0042421:+978 Msa1462580:CDS
CAAACAAAATCCAGAATCAA+AGG 0.531464 tig0042421:-2435 Msa1462580:intergenic
CAGCAGTAAGTGTACGGCTA+CGG 0.532367 tig0042421:-1989 Msa1462580:intergenic
CGCTTGCCAACAATCTCGGC+AGG 0.533088 tig0042421:-2044 Msa1462580:intergenic
GTTTGAAGATGTTCACATCA+AGG 0.540861 tig0042421:+917 Msa1462580:exon
AAACAATACCGAATACAAGT+TGG 0.543122 tig0042421:+2255 Msa1462580:CDS
TCCATGTCCCATATAGATTG+AGG 0.544635 tig0042421:+1293 Msa1462580:CDS
AAAAGCTACATTAATAAACT+AGG 0.552319 tig0042421:-2484 Msa1462580:intergenic
GCTCCCTAACAAGCCTGACA+TGG 0.561527 tig0042421:-1333 Msa1462580:intergenic
TCCTCAATCTATATGGGACA+TGG 0.562889 tig0042421:-1294 Msa1462580:intergenic
TGGAGGACGAACAATCCTCC+TGG 0.564844 tig0042421:-1940 Msa1462580:intergenic
ACAGATTCCTCAAATTCAGT+TGG 0.566353 tig0042421:-970 Msa1462580:intergenic
ATGTTATCCTGATTGCCACC+AGG 0.588268 tig0042421:+1922 Msa1462580:CDS
AGTGCGCTTGCCAACAATCT+CGG 0.589160 tig0042421:-2048 Msa1462580:intergenic
CTAAACCTAAGCCTCGGTAA+CGG 0.590978 tig0042421:-2335 Msa1462580:intergenic
CGTGGACAGCAGTAAGTGTA+CGG 0.599592 tig0042421:-1995 Msa1462580:intergenic
TGTCCACGAGGCAATGCTTG+AGG 0.600364 tig0042421:+2010 Msa1462580:CDS
AAGAAAATCAGCAAGGACAA+AGG 0.606288 tig0042421:+940 Msa1462580:CDS
TGTCCCATATAGATTGAGGA+AGG 0.607696 tig0042421:+1297 Msa1462580:CDS
CGATGTTTCTGGCAACCGCA+AGG 0.612148 tig0042421:+1261 Msa1462580:CDS
CGAGAAGAAATTCAGCGGCA+AGG 0.622026 tig0042421:+1357 Msa1462580:CDS
CAGAACCTAAACCTAAGCCT+CGG 0.627766 tig0042421:-2341 Msa1462580:intergenic
GGTTGCCAGAAACATCGACT+TGG 0.639023 tig0042421:-1255 Msa1462580:intergenic
TGATGGATCAAAGATCATGA+AGG 0.639271 tig0042421:+2082 Msa1462580:CDS
GTCCCATATAGATTGAGGAA+GGG 0.647191 tig0042421:+1298 Msa1462580:CDS
CAGTAAGTGTACGGCTACGG+GGG 0.652122 tig0042421:-1986 Msa1462580:intergenic
ATCAAGGAAGAAAATCAGCA+AGG 0.665247 tig0042421:+933 Msa1462580:CDS
CATCCTCAAGCATTGCCTCG+TGG 0.673479 tig0042421:-2013 Msa1462580:intergenic
TTATCCTGATTGCCACCAGG+AGG 0.673801 tig0042421:+1925 Msa1462580:CDS
TACACTTACTGCTGTCCACG+AGG 0.675978 tig0042421:+1998 Msa1462580:CDS
GTTTGAGTATCCCGTTACCG+AGG 0.676627 tig0042421:+2324 Msa1462580:CDS
GCAGTAAGTGTACGGCTACG+GGG 0.682631 tig0042421:-1987 Msa1462580:intergenic
TGATCTTTGATCCATCAACT+CGG 0.685009 tig0042421:-2076 Msa1462580:intergenic
CATGGATAACCACAGCCTTG+CGG 0.691240 tig0042421:-1276 Msa1462580:intergenic
GAGCTCGAGAAGAAATTCAG+CGG 0.716420 tig0042421:+1352 Msa1462580:CDS
AGATAGTTTCCTGTAAACAG+CGG 0.719077 tig0042421:-2287 None:intergenic
AGGACGAACAATCCTCCTGG+TGG 0.733797 tig0042421:-1937 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTGAAATCAAAACATAT+TGG - tig0042421:1757-1776 Msa1462580:intergenic 15.0%
!!! TAATTTTAATTGAATTCTTG+TGG + tig0042421:2194-2213 Msa1462580:intron 15.0%
!!! TGATAAATGTAAACTTTTTA+TGG - tig0042421:2601-2620 Msa1462580:intergenic 15.0%
!!! AATTTGAAATCAAAACATAT+TGG - tig0042421:1757-1776 Msa1462580:intergenic 15.0%
!!! TAATTTTAATTGAATTCTTG+TGG + tig0042421:2194-2213 Msa1462580:intron 15.0%
!!! TGATAAATGTAAACTTTTTA+TGG - tig0042421:2601-2620 Msa1462580:intergenic 15.0%
!!! CTTATTCATTATCTAAGTTT+TGG - tig0042421:2165-2184 Msa1462580:intergenic 20.0%
!! AAAAGCTACATTAATAAACT+AGG - tig0042421:2487-2506 Msa1462580:intergenic 20.0%
!!! CTTATTCATTATCTAAGTTT+TGG - tig0042421:2165-2184 Msa1462580:intergenic 20.0%
!! AAAAGCTACATTAATAAACT+AGG - tig0042421:2487-2506 Msa1462580:intergenic 20.0%
!!! TTAAAATTTGTTGTTGTTGC+AGG + tig0042421:1071-1090 Msa1462580:intron 25.0%
! AATTAAGGATCAAAAGACAA+TGG - tig0042421:1474-1493 Msa1462580:intergenic 25.0%
! GTTAAACAAGGTTTCAATTA+AGG - tig0042421:1489-1508 Msa1462580:intergenic 25.0%
! ATTGGAATTTCATTATGAAC+TGG + tig0042421:1576-1595 Msa1462580:intron 25.0%
!!! CAGTTTTAAATCAAACTGTA+GGG + tig0042421:1821-1840 Msa1462580:intron 25.0%
!!! AGTAACTTTTGGAAGTTATT+TGG - tig0042421:2124-2143 Msa1462580:intergenic 25.0%
! TTTGTTTCATGAATTGCATA+TGG + tig0042421:2379-2398 Msa1462580:three_prime_UTR 25.0%
! ACTTTCAGGAAAAAATACTT+TGG + tig0042421:2461-2480 Msa1462580:three_prime_UTR 25.0%
! AAAACTTGGAAATAAGCAAA+TGG - tig0042421:2535-2554 Msa1462580:intergenic 25.0%
!!! TTAAAATTTGTTGTTGTTGC+AGG + tig0042421:1071-1090 Msa1462580:intron 25.0%
! AATTAAGGATCAAAAGACAA+TGG - tig0042421:1474-1493 Msa1462580:intergenic 25.0%
! GTTAAACAAGGTTTCAATTA+AGG - tig0042421:1489-1508 Msa1462580:intergenic 25.0%
! ATTGGAATTTCATTATGAAC+TGG + tig0042421:1576-1595 Msa1462580:intron 25.0%
!!! CAGTTTTAAATCAAACTGTA+GGG + tig0042421:1821-1840 Msa1462580:intron 25.0%
!!! AGTAACTTTTGGAAGTTATT+TGG - tig0042421:2124-2143 Msa1462580:intergenic 25.0%
! TTTGTTTCATGAATTGCATA+TGG + tig0042421:2379-2398 Msa1462580:three_prime_UTR 25.0%
! ACTTTCAGGAAAAAATACTT+TGG + tig0042421:2461-2480 Msa1462580:three_prime_UTR 25.0%
! AAAACTTGGAAATAAGCAAA+TGG - tig0042421:2535-2554 Msa1462580:intergenic 25.0%
! TGAGTTCTAACTTTGCATAT+AGG + tig0042421:895-914 Msa1462580:five_prime_UTR 30.0%
AATGACTCTATACAGAACAA+AGG - tig0042421:1401-1420 Msa1462580:intergenic 30.0%
TTGTTCTGTATAGAGTCATT+AGG + tig0042421:1401-1420 Msa1462580:intron 30.0%
GTGCTATAGTAAGTTAAACA+AGG - tig0042421:1501-1520 Msa1462580:intergenic 30.0%
AATGTGATTGAGGGAAATTA+CGG - tig0042421:1523-1542 Msa1462580:intergenic 30.0%
!! GACTGGAATTTTGTTATGAT+TGG + tig0042421:1558-1577 Msa1462580:intron 30.0%
!!! GCAGTTTTAAATCAAACTGT+AGG + tig0042421:1820-1839 Msa1462580:intron 30.0%
! ATGAAGCATCATGCATATAA+TGG - tig0042421:1868-1887 Msa1462580:intergenic 30.0%
! TTGATTGATACAGGTGTTTT+TGG + tig0042421:2219-2238 Msa1462580:intron 30.0%
AAACAATACCGAATACAAGT+TGG + tig0042421:2255-2274 Msa1462580:CDS 30.0%
CAAACAAAATCCAGAATCAA+AGG - tig0042421:2438-2457 Msa1462580:intergenic 30.0%
! CTTTGATTCTGGATTTTGTT+TGG + tig0042421:2436-2455 Msa1462580:three_prime_UTR 30.0%
! TCCAAGTTTTCTTCAGTATT+TGG + tig0042421:2545-2564 Msa1462580:three_prime_UTR 30.0%
ACCAAATACTGAAGAAAACT+TGG - tig0042421:2549-2568 Msa1462580:intergenic 30.0%
! TGAGTTCTAACTTTGCATAT+AGG + tig0042421:895-914 Msa1462580:five_prime_UTR 30.0%
AATGACTCTATACAGAACAA+AGG - tig0042421:1401-1420 Msa1462580:intergenic 30.0%
TTGTTCTGTATAGAGTCATT+AGG + tig0042421:1401-1420 Msa1462580:intron 30.0%
GTGCTATAGTAAGTTAAACA+AGG - tig0042421:1501-1520 Msa1462580:intergenic 30.0%
AATGTGATTGAGGGAAATTA+CGG - tig0042421:1523-1542 Msa1462580:intergenic 30.0%
!! GACTGGAATTTTGTTATGAT+TGG + tig0042421:1558-1577 Msa1462580:intron 30.0%
!!! GCAGTTTTAAATCAAACTGT+AGG + tig0042421:1820-1839 Msa1462580:intron 30.0%
! ATGAAGCATCATGCATATAA+TGG - tig0042421:1868-1887 Msa1462580:intergenic 30.0%
! TTGATTGATACAGGTGTTTT+TGG + tig0042421:2219-2238 Msa1462580:intron 30.0%
AAACAATACCGAATACAAGT+TGG + tig0042421:2255-2274 Msa1462580:CDS 30.0%
CAAACAAAATCCAGAATCAA+AGG - tig0042421:2438-2457 Msa1462580:intergenic 30.0%
! CTTTGATTCTGGATTTTGTT+TGG + tig0042421:2436-2455 Msa1462580:three_prime_UTR 30.0%
! TCCAAGTTTTCTTCAGTATT+TGG + tig0042421:2545-2564 Msa1462580:three_prime_UTR 30.0%
ACCAAATACTGAAGAAAACT+TGG - tig0042421:2549-2568 Msa1462580:intergenic 30.0%
GTTTGAAGATGTTCACATCA+AGG + tig0042421:917-936 Msa1462580:exon 35.0%
ATCAAGGAAGAAAATCAGCA+AGG + tig0042421:933-952 Msa1462580:CDS 35.0%
AAGAAAATCAGCAAGGACAA+AGG + tig0042421:940-959 Msa1462580:CDS 35.0%
ACAGATTCCTCAAATTCAGT+TGG - tig0042421:973-992 Msa1462580:intergenic 35.0%
ACTGAATTTGAGGAATCTGT+TGG + tig0042421:973-992 Msa1462580:CDS 35.0%
ATCCCTTCCTCAATCTATAT+GGG - tig0042421:1303-1322 Msa1462580:intergenic 35.0%
AATCCCTTCCTCAATCTATA+TGG - tig0042421:1304-1323 Msa1462580:intergenic 35.0%
! TTTTGTCACACTACAGTTTC+CGG + tig0042421:1425-1444 Msa1462580:intron 35.0%
! GTTGACAAATAAAAGAGCAC+CGG - tig0042421:1447-1466 Msa1462580:intergenic 35.0%
TCAGCGAGAATTACTATCAA+CGG - tig0042421:1784-1803 Msa1462580:intergenic 35.0%
GCATCATGCATATAATGGTA+TGG - tig0042421:1863-1882 Msa1462580:intergenic 35.0%
!! CTAATGAACCTTTAACTTGC+AGG + tig0042421:1899-1918 Msa1462580:intron 35.0%
GATAACATCCTGCAAGTTAA+AGG - tig0042421:1910-1929 Msa1462580:intergenic 35.0%
TGATCTTTGATCCATCAACT+CGG - tig0042421:2079-2098 Msa1462580:intergenic 35.0%
! TGATGGATCAAAGATCATGA+AGG + tig0042421:2082-2101 Msa1462580:CDS 35.0%
!!! CTTGTGGTTTTGATTGATAC+AGG + tig0042421:2210-2229 Msa1462580:intron 35.0%
GAATGTCTCCAACTTGTATT+CGG - tig0042421:2266-2285 Msa1462580:intergenic 35.0%
AGATAGTTTCCTGTAAACAG+CGG - tig0042421:2290-2309 Msa1462580:intergenic 35.0%
!! GATTTTGTTTGGTGACTTTC+AGG + tig0042421:2447-2466 Msa1462580:three_prime_UTR 35.0%
! GTTTTCTTCAGTATTTGGTC+TGG + tig0042421:2550-2569 Msa1462580:three_prime_UTR 35.0%
GTTTGAAGATGTTCACATCA+AGG + tig0042421:917-936 Msa1462580:exon 35.0%
ATCAAGGAAGAAAATCAGCA+AGG + tig0042421:933-952 Msa1462580:CDS 35.0%
AAGAAAATCAGCAAGGACAA+AGG + tig0042421:940-959 Msa1462580:CDS 35.0%
ACAGATTCCTCAAATTCAGT+TGG - tig0042421:973-992 Msa1462580:intergenic 35.0%
ACTGAATTTGAGGAATCTGT+TGG + tig0042421:973-992 Msa1462580:CDS 35.0%
ATCCCTTCCTCAATCTATAT+GGG - tig0042421:1303-1322 Msa1462580:intergenic 35.0%
AATCCCTTCCTCAATCTATA+TGG - tig0042421:1304-1323 Msa1462580:intergenic 35.0%
! TTTTGTCACACTACAGTTTC+CGG + tig0042421:1425-1444 Msa1462580:intron 35.0%
! GTTGACAAATAAAAGAGCAC+CGG - tig0042421:1447-1466 Msa1462580:intergenic 35.0%
TCAGCGAGAATTACTATCAA+CGG - tig0042421:1784-1803 Msa1462580:intergenic 35.0%
GCATCATGCATATAATGGTA+TGG - tig0042421:1863-1882 Msa1462580:intergenic 35.0%
!! CTAATGAACCTTTAACTTGC+AGG + tig0042421:1899-1918 Msa1462580:intron 35.0%
GATAACATCCTGCAAGTTAA+AGG - tig0042421:1910-1929 Msa1462580:intergenic 35.0%
TGATCTTTGATCCATCAACT+CGG - tig0042421:2079-2098 Msa1462580:intergenic 35.0%
! TGATGGATCAAAGATCATGA+AGG + tig0042421:2082-2101 Msa1462580:CDS 35.0%
!!! CTTGTGGTTTTGATTGATAC+AGG + tig0042421:2210-2229 Msa1462580:intron 35.0%
GAATGTCTCCAACTTGTATT+CGG - tig0042421:2266-2285 Msa1462580:intergenic 35.0%
AGATAGTTTCCTGTAAACAG+CGG - tig0042421:2290-2309 Msa1462580:intergenic 35.0%
!! GATTTTGTTTGGTGACTTTC+AGG + tig0042421:2447-2466 Msa1462580:three_prime_UTR 35.0%
! GTTTTCTTCAGTATTTGGTC+TGG + tig0042421:2550-2569 Msa1462580:three_prime_UTR 35.0%
ATTTGAGGAATCTGTTGGAC+AGG + tig0042421:978-997 Msa1462580:CDS 40.0%
!! ATCGACTTGGCTGTAGATTA+TGG - tig0042421:1245-1264 Msa1462580:intergenic 40.0%
TCCATGTCCCATATAGATTG+AGG + tig0042421:1293-1312 Msa1462580:CDS 40.0%
TCCTCAATCTATATGGGACA+TGG - tig0042421:1297-1316 Msa1462580:intergenic 40.0%
TGTCCCATATAGATTGAGGA+AGG + tig0042421:1297-1316 Msa1462580:CDS 40.0%
GTCCCATATAGATTGAGGAA+GGG + tig0042421:1298-1317 Msa1462580:CDS 40.0%
! AAATCCATGTCAGGCTTGTT+AGG + tig0042421:1329-1348 Msa1462580:CDS 40.0%
!! AATCCATGTCAGGCTTGTTA+GGG + tig0042421:1330-1349 Msa1462580:CDS 40.0%
ACCATCGAGAATGTGATTGA+GGG - tig0042421:1532-1551 Msa1462580:intergenic 40.0%
TACCATCGAGAATGTGATTG+AGG - tig0042421:1533-1552 Msa1462580:intergenic 40.0%
TGTCCAACACAGTGCTTAAA+CGG + tig0042421:1696-1715 Msa1462580:intron 40.0%
! TAACCGTTTAAGCACTGTGT+TGG - tig0042421:1702-1721 Msa1462580:intergenic 40.0%
TAGTAATTCTCGCTGAGTAG+AGG + tig0042421:1788-1807 Msa1462580:intron 40.0%
ATTGTTCGTCCTCCAAAGAA+AGG + tig0042421:1948-1967 Msa1462580:CDS 40.0%
! AACGCAACAGGAGTAACTTT+TGG - tig0042421:2135-2154 Msa1462580:intergenic 40.0%
TTTGGTTGATTGAACGCAAC+AGG - tig0042421:2147-2166 Msa1462580:intergenic 40.0%
! CGGTATTGTTTCTCTCCTTT+GGG - tig0042421:2246-2265 Msa1462580:intergenic 40.0%
! TCGGTATTGTTTCTCTCCTT+TGG - tig0042421:2247-2266 Msa1462580:intergenic 40.0%
GCTGTTTACAGGAAACTATC+TGG + tig0042421:2289-2308 Msa1462580:CDS 40.0%
!! GTTCAAGTTGCCTTTGATTC+TGG + tig0042421:2425-2444 Msa1462580:three_prime_UTR 40.0%
CTTCAGTATTTGGTCTGGAA+TGG + tig0042421:2555-2574 Msa1462580:three_prime_UTR 40.0%
ATTTGAGGAATCTGTTGGAC+AGG + tig0042421:978-997 Msa1462580:CDS 40.0%
!! ATCGACTTGGCTGTAGATTA+TGG - tig0042421:1245-1264 Msa1462580:intergenic 40.0%
TCCATGTCCCATATAGATTG+AGG + tig0042421:1293-1312 Msa1462580:CDS 40.0%
TCCTCAATCTATATGGGACA+TGG - tig0042421:1297-1316 Msa1462580:intergenic 40.0%
TGTCCCATATAGATTGAGGA+AGG + tig0042421:1297-1316 Msa1462580:CDS 40.0%
GTCCCATATAGATTGAGGAA+GGG + tig0042421:1298-1317 Msa1462580:CDS 40.0%
! AAATCCATGTCAGGCTTGTT+AGG + tig0042421:1329-1348 Msa1462580:CDS 40.0%
!! AATCCATGTCAGGCTTGTTA+GGG + tig0042421:1330-1349 Msa1462580:CDS 40.0%
ACCATCGAGAATGTGATTGA+GGG - tig0042421:1532-1551 Msa1462580:intergenic 40.0%
TACCATCGAGAATGTGATTG+AGG - tig0042421:1533-1552 Msa1462580:intergenic 40.0%
TGTCCAACACAGTGCTTAAA+CGG + tig0042421:1696-1715 Msa1462580:intron 40.0%
! TAACCGTTTAAGCACTGTGT+TGG - tig0042421:1702-1721 Msa1462580:intergenic 40.0%
TAGTAATTCTCGCTGAGTAG+AGG + tig0042421:1788-1807 Msa1462580:intron 40.0%
ATTGTTCGTCCTCCAAAGAA+AGG + tig0042421:1948-1967 Msa1462580:CDS 40.0%
! AACGCAACAGGAGTAACTTT+TGG - tig0042421:2135-2154 Msa1462580:intergenic 40.0%
TTTGGTTGATTGAACGCAAC+AGG - tig0042421:2147-2166 Msa1462580:intergenic 40.0%
! CGGTATTGTTTCTCTCCTTT+GGG - tig0042421:2246-2265 Msa1462580:intergenic 40.0%
! TCGGTATTGTTTCTCTCCTT+TGG - tig0042421:2247-2266 Msa1462580:intergenic 40.0%
GCTGTTTACAGGAAACTATC+TGG + tig0042421:2289-2308 Msa1462580:CDS 40.0%
!! GTTCAAGTTGCCTTTGATTC+TGG + tig0042421:2425-2444 Msa1462580:three_prime_UTR 40.0%
CTTCAGTATTTGGTCTGGAA+TGG + tig0042421:2555-2574 Msa1462580:three_prime_UTR 40.0%
TGCTGAGCCAACTGAATTTG+AGG + tig0042421:963-982 Msa1462580:CDS 45.0%
TACAGCCAAGTCGATGTTTC+TGG + tig0042421:1250-1269 Msa1462580:intron 45.0%
GATTCCGCAAAATCCATGTC+AGG + tig0042421:1320-1339 Msa1462580:CDS 45.0%
! CAAGCCTGACATGGATTTTG+CGG - tig0042421:1327-1346 Msa1462580:intergenic 45.0%
GAGCTCGAGAAGAAATTCAG+CGG + tig0042421:1352-1371 Msa1462580:CDS 45.0%
TCCCTCAATCACATTCTCGA+TGG + tig0042421:1528-1547 Msa1462580:intron 45.0%
TTCTCGATGGTAACTGTGAC+TGG + tig0042421:1541-1560 Msa1462580:intron 45.0%
ATGTTATCCTGATTGCCACC+AGG + tig0042421:1922-1941 Msa1462580:CDS 45.0%
TGAGCAGCAGAACCTTTCTT+TGG - tig0042421:1963-1982 Msa1462580:intergenic 45.0%
!!! ACAGGTGTTTTTGGACCCAA+AGG + tig0042421:2228-2247 Msa1462580:intron 45.0%
AGACATTCTCCGCTGTTTAC+AGG + tig0042421:2278-2297 Msa1462580:CDS 45.0%
TAAACCTAAGCCTCGGTAAC+GGG - tig0042421:2337-2356 Msa1462580:intergenic 45.0%
CTAAACCTAAGCCTCGGTAA+CGG - tig0042421:2338-2357 Msa1462580:intergenic 45.0%
CAGAACCTAAACCTAAGCCT+CGG - tig0042421:2344-2363 Msa1462580:intergenic 45.0%
TGCTGAGCCAACTGAATTTG+AGG + tig0042421:963-982 Msa1462580:CDS 45.0%
TACAGCCAAGTCGATGTTTC+TGG + tig0042421:1250-1269 Msa1462580:intron 45.0%
GATTCCGCAAAATCCATGTC+AGG + tig0042421:1320-1339 Msa1462580:CDS 45.0%
! CAAGCCTGACATGGATTTTG+CGG - tig0042421:1327-1346 Msa1462580:intergenic 45.0%
GAGCTCGAGAAGAAATTCAG+CGG + tig0042421:1352-1371 Msa1462580:CDS 45.0%
TCCCTCAATCACATTCTCGA+TGG + tig0042421:1528-1547 Msa1462580:intron 45.0%
TTCTCGATGGTAACTGTGAC+TGG + tig0042421:1541-1560 Msa1462580:intron 45.0%
ATGTTATCCTGATTGCCACC+AGG + tig0042421:1922-1941 Msa1462580:CDS 45.0%
TGAGCAGCAGAACCTTTCTT+TGG - tig0042421:1963-1982 Msa1462580:intergenic 45.0%
!!! ACAGGTGTTTTTGGACCCAA+AGG + tig0042421:2228-2247 Msa1462580:intron 45.0%
AGACATTCTCCGCTGTTTAC+AGG + tig0042421:2278-2297 Msa1462580:CDS 45.0%
TAAACCTAAGCCTCGGTAAC+GGG - tig0042421:2337-2356 Msa1462580:intergenic 45.0%
CTAAACCTAAGCCTCGGTAA+CGG - tig0042421:2338-2357 Msa1462580:intergenic 45.0%
CAGAACCTAAACCTAAGCCT+CGG - tig0042421:2344-2363 Msa1462580:intergenic 45.0%
!!! TTTTGATATATTTTTATTAT+AGG + tig0042421:2503-2522 Msa1462580:three_prime_UTR 5.0%
!!! TTTTGATATATTTTTATTAT+AGG + tig0042421:2503-2522 Msa1462580:three_prime_UTR 5.0%
!! TGAGCTCACTTTTCAGCTCG+TGG - tig0042421:1122-1141 Msa1462580:intergenic 50.0%
! GGTTGCCAGAAACATCGACT+TGG - tig0042421:1258-1277 Msa1462580:intergenic 50.0%
CATGGATAACCACAGCCTTG+CGG - tig0042421:1279-1298 Msa1462580:intergenic 50.0%
CGAGAAGAAATTCAGCGGCA+AGG + tig0042421:1357-1376 Msa1462580:CDS 50.0%
GCACTGTGTTGGACATCAGA+AGG - tig0042421:1691-1710 Msa1462580:intergenic 50.0%
TTATCCTGATTGCCACCAGG+AGG + tig0042421:1925-1944 Msa1462580:CDS 50.0%
GCAGCAGAACCTTTCTTTGG+AGG - tig0042421:1960-1979 Msa1462580:intergenic 50.0%
AGCAGTAAGTGTACGGCTAC+GGG - tig0042421:1991-2010 Msa1462580:intergenic 50.0%
CAGCAGTAAGTGTACGGCTA+CGG - tig0042421:1992-2011 Msa1462580:intergenic 50.0%
CGTGGACAGCAGTAAGTGTA+CGG - tig0042421:1998-2017 Msa1462580:intergenic 50.0%
TACACTTACTGCTGTCCACG+AGG + tig0042421:1998-2017 Msa1462580:CDS 50.0%
GTGTTACCTGCCGAGATTGT+TGG + tig0042421:2038-2057 Msa1462580:CDS 50.0%
AGTGCGCTTGCCAACAATCT+CGG - tig0042421:2051-2070 Msa1462580:intergenic 50.0%
AGATTGTTGGCAAGCGCACT+AGG + tig0042421:2051-2070 Msa1462580:CDS 50.0%
GTTTGAGTATCCCGTTACCG+AGG + tig0042421:2324-2343 Msa1462580:CDS 50.0%
CGTTACCGAGGCTTAGGTTT+AGG + tig0042421:2336-2355 Msa1462580:exon 50.0%
!! TGAGCTCACTTTTCAGCTCG+TGG - tig0042421:1122-1141 Msa1462580:intergenic 50.0%
! GGTTGCCAGAAACATCGACT+TGG - tig0042421:1258-1277 Msa1462580:intergenic 50.0%
CATGGATAACCACAGCCTTG+CGG - tig0042421:1279-1298 Msa1462580:intergenic 50.0%
CGAGAAGAAATTCAGCGGCA+AGG + tig0042421:1357-1376 Msa1462580:CDS 50.0%
GCACTGTGTTGGACATCAGA+AGG - tig0042421:1691-1710 Msa1462580:intergenic 50.0%
TTATCCTGATTGCCACCAGG+AGG + tig0042421:1925-1944 Msa1462580:CDS 50.0%
GCAGCAGAACCTTTCTTTGG+AGG - tig0042421:1960-1979 Msa1462580:intergenic 50.0%
AGCAGTAAGTGTACGGCTAC+GGG - tig0042421:1991-2010 Msa1462580:intergenic 50.0%
CAGCAGTAAGTGTACGGCTA+CGG - tig0042421:1992-2011 Msa1462580:intergenic 50.0%
CGTGGACAGCAGTAAGTGTA+CGG - tig0042421:1998-2017 Msa1462580:intergenic 50.0%
TACACTTACTGCTGTCCACG+AGG + tig0042421:1998-2017 Msa1462580:CDS 50.0%
GTGTTACCTGCCGAGATTGT+TGG + tig0042421:2038-2057 Msa1462580:CDS 50.0%
AGTGCGCTTGCCAACAATCT+CGG - tig0042421:2051-2070 Msa1462580:intergenic 50.0%
AGATTGTTGGCAAGCGCACT+AGG + tig0042421:2051-2070 Msa1462580:CDS 50.0%
GTTTGAGTATCCCGTTACCG+AGG + tig0042421:2324-2343 Msa1462580:CDS 50.0%
CGTTACCGAGGCTTAGGTTT+AGG + tig0042421:2336-2355 Msa1462580:exon 50.0%
!! CGATGTTTCTGGCAACCGCA+AGG + tig0042421:1261-1280 Msa1462580:CDS 55.0%
GCTCCCTAACAAGCCTGACA+TGG - tig0042421:1336-1355 Msa1462580:intergenic 55.0%
CAATCCTCCTGGTGGCAATC+AGG - tig0042421:1932-1951 Msa1462580:intergenic 55.0%
AGGACGAACAATCCTCCTGG+TGG - tig0042421:1940-1959 Msa1462580:intergenic 55.0%
TGGAGGACGAACAATCCTCC+TGG - tig0042421:1943-1962 Msa1462580:intergenic 55.0%
CAGTAAGTGTACGGCTACGG+GGG - tig0042421:1989-2008 Msa1462580:intergenic 55.0%
GCAGTAAGTGTACGGCTACG+GGG - tig0042421:1990-2009 Msa1462580:intergenic 55.0%
TGTCCACGAGGCAATGCTTG+AGG + tig0042421:2010-2029 Msa1462580:CDS 55.0%
! CATCCTCAAGCATTGCCTCG+TGG - tig0042421:2016-2035 Msa1462580:intergenic 55.0%
!! CGCACTAGGTACCGAGTTGA+TGG + tig0042421:2065-2084 Msa1462580:CDS 55.0%
GTATCCCGTTACCGAGGCTT+AGG + tig0042421:2330-2349 Msa1462580:CDS 55.0%
!! CGATGTTTCTGGCAACCGCA+AGG + tig0042421:1261-1280 Msa1462580:CDS 55.0%
GCTCCCTAACAAGCCTGACA+TGG - tig0042421:1336-1355 Msa1462580:intergenic 55.0%
CAATCCTCCTGGTGGCAATC+AGG - tig0042421:1932-1951 Msa1462580:intergenic 55.0%
AGGACGAACAATCCTCCTGG+TGG - tig0042421:1940-1959 Msa1462580:intergenic 55.0%
TGGAGGACGAACAATCCTCC+TGG - tig0042421:1943-1962 Msa1462580:intergenic 55.0%
CAGTAAGTGTACGGCTACGG+GGG - tig0042421:1989-2008 Msa1462580:intergenic 55.0%
GCAGTAAGTGTACGGCTACG+GGG - tig0042421:1990-2009 Msa1462580:intergenic 55.0%
TGTCCACGAGGCAATGCTTG+AGG + tig0042421:2010-2029 Msa1462580:CDS 55.0%
! CATCCTCAAGCATTGCCTCG+TGG - tig0042421:2016-2035 Msa1462580:intergenic 55.0%
!! CGCACTAGGTACCGAGTTGA+TGG + tig0042421:2065-2084 Msa1462580:CDS 55.0%
GTATCCCGTTACCGAGGCTT+AGG + tig0042421:2330-2349 Msa1462580:CDS 55.0%
TTCTGGCAACCGCAAGGCTG+TGG + tig0042421:1267-1286 Msa1462580:CDS 60.0%
CGCTTGCCAACAATCTCGGC+AGG - tig0042421:2047-2066 Msa1462580:intergenic 60.0%
TTCTGGCAACCGCAAGGCTG+TGG + tig0042421:1267-1286 Msa1462580:CDS 60.0%
CGCTTGCCAACAATCTCGGC+AGG - tig0042421:2047-2066 Msa1462580:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0042421 gene 828 2679 828 ID=Msa1462580;Name=Msa1462580
tig0042421 mRNA 828 2679 828 ID=Msa1462580-mRNA-1;Parent=Msa1462580;Name=Msa1462580-mRNA-1;_AED=0.07;_eAED=0.07;_QI=97|1|1|1|1|1|5|328|191
tig0042421 exon 828 999 828 ID=Msa1462580-mRNA-1:exon:23724;Parent=Msa1462580-mRNA-1
tig0042421 exon 1093 1166 1093 ID=Msa1462580-mRNA-1:exon:23725;Parent=Msa1462580-mRNA-1
tig0042421 exon 1255 1378 1255 ID=Msa1462580-mRNA-1:exon:23726;Parent=Msa1462580-mRNA-1
tig0042421 exon 1921 2103 1921 ID=Msa1462580-mRNA-1:exon:23727;Parent=Msa1462580-mRNA-1
tig0042421 exon 2232 2679 2232 ID=Msa1462580-mRNA-1:exon:23728;Parent=Msa1462580-mRNA-1
tig0042421 five_prime_UTR 828 924 828 ID=Msa1462580-mRNA-1:five_prime_utr;Parent=Msa1462580-mRNA-1
tig0042421 CDS 925 999 925 ID=Msa1462580-mRNA-1:cds;Parent=Msa1462580-mRNA-1
tig0042421 CDS 1093 1166 1093 ID=Msa1462580-mRNA-1:cds;Parent=Msa1462580-mRNA-1
tig0042421 CDS 1255 1378 1255 ID=Msa1462580-mRNA-1:cds;Parent=Msa1462580-mRNA-1
tig0042421 CDS 1921 2103 1921 ID=Msa1462580-mRNA-1:cds;Parent=Msa1462580-mRNA-1
tig0042421 CDS 2232 2351 2232 ID=Msa1462580-mRNA-1:cds;Parent=Msa1462580-mRNA-1
tig0042421 three_prime_UTR 2352 2679 2352 ID=Msa1462580-mRNA-1:three_prime_utr;Parent=Msa1462580-mRNA-1
Gene Sequence

>Msa1462580

ATGTTCACATCAAGGAAGAAAATCAGCAAGGACAAAGGTGCTGAGCCAACTGAATTTGAGGAATCTGTTGGACAGGCTTTGTTTGATCTCGAAAACACAAACCACGAGCTGAAAAGTGAGCTCAAAGATTTATACATCAATTCAGCAGTCCAAGTCGATGTTTCTGGCAACCGCAAGGCTGTGGTTATCCATGTCCCATATAGATTGAGGAAGGGATTCCGCAAAATCCATGTCAGGCTTGTTAGGGAGCTCGAGAAGAAATTCAGCGGCAAGGATGTTATCCTGATTGCCACCAGGAGGATTGTTCGTCCTCCAAAGAAAGGTTCTGCTGCTCAGCGCCCCCGTAGCCGTACACTTACTGCTGTCCACGAGGCAATGCTTGAGGATGTTGTGTTACCTGCCGAGATTGTTGGCAAGCGCACTAGGTACCGAGTTGATGGATCAAAGATCATGAAGGTGTTTTTGGACCCAAAGGAGAGAAACAATACCGAATACAAGTTGGAGACATTCTCCGCTGTTTACAGGAAACTATCTGGCAAAGATGTTGTGTTTGAGTATCCCGTTACCGAGGCTTAG

Protein sequence

>Msa1462580

MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNHELKSELKDLYINSAVQVDVSGNRKAVVIHVPYRLRKGFRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLTAVHEAMLEDVVLPAEIVGKRTRYRVDGSKIMKVFLDPKERNNTEYKLETFSAVYRKLSGKDVVFEYPVTEA*