AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0922750

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0922750 MtrunA17_Chr6g0481041 98.077 728 12 2 1 726 1 728 0.0 1491
Msa0922750 MtrunA17_Chr8g0350321 48.452 743 344 10 2 725 88 810 0.0 681
Msa0922750 MtrunA17_Chr7g0246631 49.721 718 322 12 23 725 85 778 0.0 680
Msa0922750 MtrunA17_Chr4g0024351 47.476 733 346 14 2 726 33 734 0.0 664
Msa0922750 MtrunA17_Chr5g0410711 48.801 709 337 15 29 726 89 782 0.0 661
Msa0922750 MtrunA17_Chr2g0322731 48.214 728 337 14 2 722 72 766 0.0 655
Msa0922750 MtrunA17_Chr1g0203671 47.331 712 343 12 27 721 93 789 0.0 638
Msa0922750 MtrunA17_Chr7g0224451 64.200 500 111 6 18 509 3 442 0.0 636
Msa0922750 MtrunA17_Chr2g0331581 41.026 702 350 12 33 723 143 791 0.0 564
Msa0922750 MtrunA17_Chr6g0472471 42.458 716 362 15 33 721 73 765 0.0 535
Msa0922750 MtrunA17_Chr7g0224481 62.404 391 85 5 18 400 3 339 1.11e-162 472
Msa0922750 MtrunA17_Chr5g0394111 35.378 701 344 13 36 721 40 646 1.65e-135 414
Msa0922750 MtrunA17_Chr7g0224491 66.460 322 82 7 403 724 1 296 4.38e-135 400
Msa0922750 MtrunA17_Chr2g0292731 42.188 512 265 11 220 721 58 548 1.42e-126 387
Msa0922750 MtrunA17_Chr2g0292741 42.745 510 260 11 220 721 50 535 5.52e-126 385
Msa0922750 MtrunA17_Chr2g0292761 33.601 622 323 19 108 721 1 540 3.43e-100 318
Msa0922750 MtrunA17_Chr5g0419821 61.194 134 51 1 17 149 21 154 1.60e-51 176
Msa0922750 MtrunA17_Chr7g0224431 54.938 162 31 2 249 410 1 120 2.95e-47 163
Msa0922750 MtrunA17_Chr7g0224461 63.077 130 35 4 595 724 1 117 7.12e-37 134
Msa0922750 MtrunA17_Chr2g0319671 40.462 173 95 3 280 452 104 268 7.25e-33 129
Msa0922750 MtrunA17_Chr2g0319681 32.231 242 142 6 485 721 1 225 7.32e-32 124
Msa0922750 MtrunA17_Chr2g0319701 35.270 241 126 10 489 721 5 223 4.88e-29 116
Msa0922750 MtrunA17_Chr2g0304191 43.284 134 74 2 234 366 1 133 1.63e-28 111
Msa0922750 MtrunA17_Chr2g0319691 40.870 115 60 3 340 452 1 109 7.37e-21 89.7
Msa0922750 MtrunA17_Chr1g0205981 29.592 196 105 6 84 269 1 173 7.12e-14 71.2
Msa0922750 MtrunA17_Chr1g0163701 86.486 37 5 0 340 376 238 274 1.36e-13 73.6
Msa0922750 MtrunA17_Chr4g0028991 30.769 182 90 6 18 163 9 190 8.44e-13 72.0
Msa0922750 MtrunA17_Chr7g0265521 38.835 103 60 1 25 124 56 158 3.52e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0922750 AT1G73360.1 63.624 712 228 13 25 726 28 718 0.0 889
Msa0922750 AT1G17920.2 59.147 727 240 15 12 726 5 686 0.0 838
Msa0922750 AT1G17920.1 59.147 727 240 15 12 726 5 686 0.0 838
Msa0922750 AT4G04890.2 51.836 708 304 16 26 723 57 737 0.0 699
Msa0922750 AT4G04890.1 51.836 708 304 16 26 723 57 737 0.0 699
Msa0922750 AT4G21750.2 50.419 716 316 15 29 723 62 759 0.0 686
Msa0922750 AT4G21750.1 50.419 716 316 15 29 723 62 759 0.0 686
Msa0922750 AT4G21750.3 50.419 716 316 15 29 723 62 759 0.0 686
Msa0922750 AT4G21750.4 50.419 716 316 15 29 723 62 759 0.0 686
Msa0922750 AT1G05230.3 47.665 728 323 12 10 726 39 719 0.0 672
Msa0922750 AT1G05230.8 47.534 730 323 13 10 726 39 721 0.0 667
Msa0922750 AT1G05230.4 47.534 730 323 13 10 726 39 721 0.0 667
Msa0922750 AT1G05230.9 47.534 730 323 13 10 726 39 721 0.0 667
Msa0922750 AT1G05230.10 47.534 730 323 13 10 726 39 721 0.0 667
Msa0922750 AT1G05230.7 47.534 730 323 13 10 726 39 721 0.0 667
Msa0922750 AT1G05230.11 47.534 730 323 13 10 726 39 721 0.0 667
Msa0922750 AT1G05230.2 47.534 730 323 13 10 726 39 721 0.0 667
Msa0922750 AT1G05230.6 47.534 730 323 13 10 726 39 721 0.0 667
Msa0922750 AT1G05230.5 47.534 730 323 13 10 726 39 721 0.0 667
Msa0922750 AT1G05230.1 47.534 730 323 13 10 726 39 721 0.0 667
Msa0922750 AT4G00730.1 47.139 734 340 12 2 725 107 802 0.0 641
Msa0922750 AT3G61150.1 46.732 719 344 15 28 726 109 808 0.0 633
Msa0922750 AT5G46880.3 44.626 735 344 19 20 721 102 806 0.0 572
Msa0922750 AT5G46880.1 44.626 735 344 19 20 721 102 806 0.0 572
Msa0922750 AT5G46880.2 44.626 735 344 19 20 721 102 806 0.0 572
Msa0922750 AT1G05230.12 49.556 563 254 10 29 586 64 601 0.0 549
Msa0922750 AT5G52170.3 43.040 704 308 15 33 725 61 682 0.0 538
Msa0922750 AT5G52170.1 43.040 704 308 15 33 725 61 682 0.0 538
Msa0922750 AT5G52170.2 42.716 707 311 15 33 725 61 687 0.0 535
Msa0922750 AT3G03260.1 40.921 738 367 17 9 724 7 697 7.99e-180 530
Msa0922750 AT1G79840.3 39.093 706 357 18 27 721 41 684 2.09e-172 511
Msa0922750 AT1G79840.6 39.093 706 357 18 27 721 41 684 2.09e-172 511
Msa0922750 AT1G79840.1 39.093 706 357 18 27 721 99 742 1.86e-171 510
Msa0922750 AT1G79840.2 39.093 706 357 18 27 721 128 771 1.06e-170 509
Msa0922750 AT2G32370.1 39.261 731 375 18 12 726 48 725 3.67e-164 491
Msa0922750 AT5G17320.1 40.434 737 368 18 21 723 18 717 1.70e-162 486
Msa0922750 AT4G17710.1 39.660 706 323 18 29 721 88 703 4.39e-159 477
Msa0922750 AT1G34650.1 40.247 728 377 17 21 723 13 707 1.56e-154 465
Msa0922750 AT1G79840.4 40.767 574 281 17 27 588 99 625 1.71e-143 434
Msa0922750 AT4G00730.2 48.608 467 211 9 2 461 107 551 1.85e-139 422
Msa0922750 AT3G03260.2 41.697 554 295 12 9 556 7 538 3.00e-137 415
Msa0922750 AT4G25530.1 34.807 701 393 16 29 722 40 683 9.74e-128 395
Msa0922750 AT1G79840.5 41.138 457 212 14 27 472 99 509 3.29e-105 331
Msa0922750 AT5G07260.1 24.910 554 333 19 96 641 11 489 1.14e-39 154
Msa0922750 AT5G07260.2 24.729 554 329 20 96 641 11 484 3.77e-39 152
Msa0922750 AT4G26920.1 22.876 459 254 15 201 651 54 420 3.76e-19 91.7
Msa0922750 AT5G60690.1 37.121 132 56 5 18 122 7 138 6.22e-14 76.3
Msa0922750 AT1G30490.1 34.821 112 65 2 15 118 4 115 2.20e-11 67.8
Msa0922750 AT1G52150.3 21.429 462 294 17 313 722 228 672 3.84e-11 67.0
Msa0922750 AT1G52150.1 21.429 462 294 17 313 722 228 672 6.20e-11 66.6
Msa0922750 AT1G52150.2 20.996 462 297 16 313 722 228 673 7.81e-11 66.2

Find 158 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTTGGTTGAAATGTTTA+TGG 0.134213 6_2:+62196585 Msa0922750:CDS
GTAAACTACTAACCATTATT+TGG 0.141492 6_2:-62198925 None:intergenic
GACTTATCAATGGGAAATTT+TGG 0.144806 6_2:+62196232 Msa0922750:CDS
CGCAAATTGAGCAAGGTTTA+TGG 0.148416 6_2:+62196996 Msa0922750:CDS
CTCCTAGACAGATCAAATTT+TGG 0.209657 6_2:+62194911 Msa0922750:CDS
ACTATTGAAGTTATCTCTTC+TGG 0.240170 6_2:+62196751 Msa0922750:CDS
ACCAATTTGCTCCGCAATTT+CGG 0.251046 6_2:+62197056 Msa0922750:CDS
GAGTCTGTTGCAACTGTTAA+TGG 0.255130 6_2:+62198968 Msa0922750:CDS
TTCAACCGATTATTAGTCTT+AGG 0.265573 6_2:-62196502 None:intergenic
GCAACTGTTAATGGACTTAT+TGG 0.266967 6_2:+62198977 Msa0922750:CDS
AACAGTTGCATTCCAAATAA+TGG 0.273585 6_2:+62198913 Msa0922750:CDS
TAGTGGGATGTTCTTTCTAA+TGG 0.297445 6_2:+62198119 Msa0922750:intron
TTCATTGATGTTAATTCAAT+TGG 0.303666 6_2:-62198707 None:intergenic
GGTCACTTGGATTGAACATT+TGG 0.308899 6_2:+62197218 Msa0922750:intron
TGCATAGTTGATGAACTTCC+AGG 0.324010 6_2:-62196301 None:intergenic
ATCTATAGTGGAGCTGCATT+TGG 0.334195 6_2:+62197285 Msa0922750:CDS
TGCAGACTAATGAGCCTCTA+TGG 0.337717 6_2:+62196419 Msa0922750:CDS
CACATTCCAGTAACACCTTC+AGG 0.343396 6_2:+62198758 Msa0922750:CDS
GCAACTCCATCTCTGTGCTT+AGG 0.352073 6_2:+62198189 Msa0922750:CDS
GATTGGTCTTCCAATGTATT+TGG 0.360707 6_2:-62196167 None:intergenic
TGAAAGACTTGCTTGTTCTA+TGG 0.364342 6_2:+62197344 Msa0922750:CDS
ATGTGAGAATATAGCTATAA+GGG 0.368026 6_2:+62195441 Msa0922750:CDS
ACCGAAATTGCGGAGCAAAT+TGG 0.378255 6_2:-62197057 None:intergenic
GTGAAACCTGAAGGTGTTAC+TGG 0.378283 6_2:-62198764 None:intergenic
GCAAATTGAGCAAGGTTTAT+GGG 0.381720 6_2:+62196997 Msa0922750:CDS
TTCATCATTGGACTTATCAA+TGG 0.382138 6_2:+62196222 Msa0922750:CDS
AAGAAATTGAAAACAGTTTG+TGG 0.386401 6_2:-62197976 None:intergenic
TGCAACCTTTGTTTCTCATC+AGG 0.387813 6_2:-62194865 None:intergenic
GAAGCTTCAATGCGAATATT+CGG 0.387981 6_2:-62196529 None:intergenic
ACCAATTCACATTTCATCAT+TGG 0.388149 6_2:+62196210 Msa0922750:CDS
TCCTAGTGGTTCTATGCAAT+TGG 0.398885 6_2:+62196786 Msa0922750:CDS
GAGAATCAGAAGAACCTTCA+TGG 0.402346 6_2:-62194616 None:intergenic
GATGTGAGAATATAGCTATA+AGG 0.404730 6_2:+62195440 Msa0922750:CDS
CAACTCCATCTCTGTGCTTA+GGG 0.406270 6_2:+62198190 Msa0922750:CDS
CACTTCCACCATTGTTCCCT+AGG 0.407591 6_2:-62198877 None:intergenic
TTTGGTGGGCATGGAATGGT+TGG 0.409505 6_2:+62196250 Msa0922750:CDS
ATTACCTTGGAGTAGCCATT+AGG 0.412515 6_2:-62197118 None:intergenic
TCTCGTGTTGTTATCATGAA+TGG 0.413589 6_2:+62196559 Msa0922750:CDS
TATAGAAATGCTATCTATAG+TGG 0.415183 6_2:+62197273 Msa0922750:CDS
TTCATTCAAGACATGCCTAA+TGG 0.418765 6_2:+62197103 Msa0922750:CDS
TTTCTATAAAGCCTATGAAC+TGG 0.420383 6_2:-62197258 None:intergenic
ATGCAATGGAAGAGATGATT+AGG 0.426158 6_2:+62196392 Msa0922750:CDS
CTTGCCATGGTCACAATAGT+AGG 0.426173 6_2:-62196727 None:intergenic
GGTGGGCATGGAATGGTTGG+AGG 0.429152 6_2:+62196253 Msa0922750:CDS
CTTGATCTTGATCTTCTACC+TGG 0.430302 6_2:+62196283 Msa0922750:CDS
GATAACAATAACAATCTTCA+AGG 0.430765 6_2:+62198812 Msa0922750:CDS
GTGCATCAGCTAGTCATAGA+TGG 0.431673 6_2:+62197836 Msa0922750:CDS
TTAAAGCAGCTTTGATGTGT+TGG 0.431801 6_2:-62199009 None:intergenic
CTGCTCTTTCCCTCAGGTGA+TGG 0.432769 6_2:-62197763 None:intergenic
AAGAAACAATCATCATTGAT+TGG 0.440524 6_2:-62195505 None:intergenic
GAAGTTGCTCATATTGCAAA+TGG 0.443252 6_2:+62198155 Msa0922750:CDS
AAAACAGTTTGTGGAGGGAG+AGG 0.444588 6_2:-62197967 None:intergenic
GGTTTCACAATCACTTCTGA+TGG 0.448901 6_2:+62198779 Msa0922750:CDS
AGTTATCTCTTCTGGAATGA+TGG 0.450155 6_2:+62196759 Msa0922750:CDS
ATCATGCTGCTCTTTCCCTC+AGG 0.452513 6_2:-62197769 None:intergenic
TCCAATGATGAAATGTGAAT+TGG 0.452865 6_2:-62196211 None:intergenic
TATCATGAATGGCTTAGCTT+TGG 0.453058 6_2:+62196570 Msa0922750:CDS
TCAACCGATTATTAGTCTTA+GGG 0.457224 6_2:-62196501 None:intergenic
GTTTCTGCCACCCGTGATCT+CGG 0.464633 6_2:+62197366 Msa0922750:CDS
AGGGAGTCAGAGTTACTGTT+AGG 0.465910 6_2:+62197881 Msa0922750:CDS
ACTGGTGGAAGCTGTGTGAT+TGG 0.466182 6_2:-62196184 None:intergenic
CACACTTTCAGCTTTGAATG+AGG 0.466242 6_2:+62197861 Msa0922750:CDS
AAGAAGTAGAATTCTCTGAT+AGG 0.466986 6_2:-62196962 None:intergenic
TCATCATTGGACTTATCAAT+GGG 0.471502 6_2:+62196223 Msa0922750:CDS
GAAAGGCAAGCTGGTTGGTA+AGG 0.487355 6_2:-62196331 None:intergenic
GTTAAGCAGAGAATTAGCTT+TGG 0.491594 6_2:+62194888 Msa0922750:CDS
GAAAGCTGTGTGGATTCATC+AGG 0.491631 6_2:+62198665 Msa0922750:CDS
CTAGGGAACAATGGTGGAAG+TGG 0.494985 6_2:+62198878 Msa0922750:CDS
ACCAGCTTGCCTTTCTGACA+TGG 0.500844 6_2:+62196339 Msa0922750:CDS
TATGTGCAGCTACTACCATT+TGG 0.503380 6_2:+62197941 Msa0922750:CDS
GAGTTTGATTTCATCCATAG+AGG 0.504517 6_2:-62196433 None:intergenic
GCATCAACAAGCTCAAACCT+AGG 0.505348 6_2:+62198860 Msa0922750:CDS
CTTTGTTTCTCATCAGGATG+AGG 0.506519 6_2:-62194859 None:intergenic
TCAATTTCTTCAAAGATGAA+AGG 0.508178 6_2:+62197989 Msa0922750:CDS
CTGCATTTGGAGCTGAAAGA+TGG 0.510050 6_2:+62197298 Msa0922750:CDS
GAAATGTGAATTGGTGCAAC+TGG 0.511399 6_2:-62196202 None:intergenic
AGTGGAGCAAGTGGGTCCCC+TGG 0.514639 6_2:+62194572 Msa0922750:CDS
GCCACCCGTGATCTCGGTGG+AGG 0.515311 6_2:+62197372 Msa0922750:CDS
AATAACAATCTTCAAGGAAG+TGG 0.515892 6_2:+62198818 Msa0922750:CDS
TGTTCCCTAAGACTAATAAT+CGG 0.516268 6_2:+62196497 Msa0922750:CDS
AGCACAGAGATGGAGTTGCC+AGG 0.521625 6_2:-62198185 None:intergenic
TTAATCTTGAAAACTATGAA+AGG 0.523531 6_2:+62196473 Msa0922750:CDS
TCCATGTCAGAAAGGCAAGC+TGG 0.530766 6_2:-62196340 None:intergenic
TATTCGCATTGAAGCTTCGA+GGG 0.530981 6_2:+62196534 Msa0922750:CDS
GAGCTGATAACTGTCAACTA+AGG 0.535625 6_2:+62195398 Msa0922750:CDS
GTTATCTCTTCTGGAATGAT+GGG 0.546482 6_2:+62196760 Msa0922750:CDS
GATGGCTCACTACTCTTCAA+AGG 0.546725 6_2:+62197316 Msa0922750:CDS
GAACAGAAGGACTCAGATGA+AGG 0.553957 6_2:+62194939 Msa0922750:CDS
AGCATTGCTGCCAAATACAT+TGG 0.554442 6_2:+62196157 Msa0922750:CDS
GTTGTCATGAGGAAAATCAT+AGG 0.556836 6_2:-62197035 None:intergenic
CTTTCCTACTATTGTGACCA+TGG 0.557478 6_2:+62196723 Msa0922750:CDS
ACACTTTCAGCTTTGAATGA+GGG 0.558221 6_2:+62197862 Msa0922750:CDS
AATTGAAAACAGTTTGTGGA+GGG 0.561046 6_2:-62197972 None:intergenic
TACTGTACGCAAATTGAGCA+AGG 0.562069 6_2:+62196989 Msa0922750:CDS
GCACAGAGATGGAGTTGCCA+GGG 0.562213 6_2:-62198184 None:intergenic
AGTGGTAATGTTAATGCTGA+TGG 0.563501 6_2:+62198836 Msa0922750:CDS
AGATGAAAGGAAAAGATCAC+AGG 0.565819 6_2:+62198002 Msa0922750:CDS
ATCTCTTCTGGAATGATGGG+TGG 0.566526 6_2:+62196763 Msa0922750:CDS
GTGATCTGCCCCTCTTGTGG+TGG 0.567379 6_2:+62195478 Msa0922750:CDS
GTATACCTCCACCGAGATCA+CGG 0.569764 6_2:-62197377 None:intergenic
ACCATCTGCTAAACTTAACA+TGG 0.570228 6_2:+62198946 Msa0922750:CDS
CATCATCATCATCACCATGA+AGG 0.573382 6_2:+62194602 Msa0922750:CDS
AGTCGATGGCACCGAAATTG+CGG 0.574598 6_2:-62197067 None:intergenic
GCACATAGCACAACACCACT+AGG 0.575221 6_2:-62197925 None:intergenic
TGGATGAAATCAAACTCTGA+TGG 0.581105 6_2:+62196439 Msa0922750:CDS
TCAGCGATTCCATCACCTGA+GGG 0.581584 6_2:+62197754 Msa0922750:intron
CTACTATTGTGACCATGGCA+AGG 0.582650 6_2:+62196728 Msa0922750:CDS
AAATGTGCAACTCAAAGAAG+AGG 0.585426 6_2:+62195552 Msa0922750:CDS
AACCAAAATTTGATCTGTCT+AGG 0.585787 6_2:-62194913 None:intergenic
GGGAACAATGGTGGAAGTGG+AGG 0.586180 6_2:+62198881 Msa0922750:CDS
CTGAAGGTGTTACTGGAATG+TGG 0.586831 6_2:-62198757 None:intergenic
ATTGCAAATGGTTCTCACCC+TGG 0.587680 6_2:+62198167 Msa0922750:CDS
GTTAGGAAAAGTACTGAGCT+TGG 0.589683 6_2:+62197898 Msa0922750:CDS
TCTTACCCTAAGCACAGAGA+TGG 0.590044 6_2:-62198195 None:intergenic
TAGGAAAGAGAGCCATCCAC+TGG 0.590384 6_2:-62196708 None:intergenic
TCCATGTTAAGTTTAGCAGA+TGG 0.590444 6_2:-62198947 None:intergenic
CTCATTCAAAGCTGAAAGTG+TGG 0.591958 6_2:-62197860 None:intergenic
ATATTCGCATTGAAGCTTCG+AGG 0.592812 6_2:+62196533 Msa0922750:CDS
TGGAGGGAGAGGTAGCCAAA+TGG 0.596344 6_2:-62197956 None:intergenic
AACTTCAATAGTCCTTGCCA+TGG 0.602161 6_2:-62196740 None:intergenic
TATACCTCCACCGAGATCAC+GGG 0.602328 6_2:-62197376 None:intergenic
CTCATCCTGATGAGAAACAA+AGG 0.606148 6_2:+62194860 Msa0922750:CDS
AGCTCAAACCTAGGGAACAA+TGG 0.607766 6_2:+62198869 Msa0922750:CDS
TCTTGAATGAAGCAACCAGA+AGG 0.608093 6_2:-62197091 None:intergenic
TGTCAGAAAGGCAAGCTGGT+TGG 0.608188 6_2:-62196336 None:intergenic
GATTGGAGGACCACCACAAG+AGG 0.608794 6_2:-62195488 None:intergenic
AAACAATCATCATTGATTGG+AGG 0.609512 6_2:-62195502 None:intergenic
GAGTATCATAGTGGAGCAAG+TGG 0.613997 6_2:+62194563 Msa0922750:CDS
TGACATTGCATCAAATGCAA+TGG 0.614917 6_2:+62196378 Msa0922750:CDS
ACACTGCTAATCAGATTCAA+AGG 0.615484 6_2:+62194666 Msa0922750:CDS
GATGAAGCTAGCACAAAGGA+TGG 0.618354 6_2:+62197789 Msa0922750:CDS
TTCAGCGATTCCATCACCTG+AGG 0.619756 6_2:+62197753 Msa0922750:intron
GGAATGATGGGTGGTCCTAG+TGG 0.629709 6_2:+62196772 Msa0922750:CDS
AAATTGAAAACAGTTTGTGG+AGG 0.630363 6_2:-62197973 None:intergenic
CATCAACAAGCTCAAACCTA+GGG 0.632798 6_2:+62198861 Msa0922750:CDS
AGAAGATCAAGATCAAGTGA+AGG 0.633385 6_2:-62196277 None:intergenic
AATTCTCTGATAGGAACAAG+TGG 0.634478 6_2:-62196953 None:intergenic
ATGTGAATTGGTGCAACTGG+TGG 0.640938 6_2:-62196199 None:intergenic
AATGTGATCTGCCCCTCTTG+TGG 0.645075 6_2:+62195475 Msa0922750:CDS
GGAGCAAATTGGTTGTCATG+AGG 0.645718 6_2:-62197046 None:intergenic
ATTGGAGGACCACCACAAGA+GGG 0.645788 6_2:-62195487 None:intergenic
ACTGAGCTTGGTCAGCCTAG+TGG 0.646545 6_2:+62197910 Msa0922750:CDS
ACCTCCACCGAGATCACGGG+TGG 0.647060 6_2:-62197373 None:intergenic
CATGCCTAATGGCTACTCCA+AGG 0.648553 6_2:+62197114 Msa0922750:CDS
GAAGTGATTGTGAAACCTGA+AGG 0.654254 6_2:-62198773 None:intergenic
GAATCTGATTAGCAGTGTGA+CGG 0.657531 6_2:-62194661 None:intergenic
TCTGCCACCCGTGATCTCGG+TGG 0.670940 6_2:+62197369 Msa0922750:CDS
AGCAACCAGAAGGAAGTCGA+TGG 0.671022 6_2:-62197081 None:intergenic
TGAAGGTGTTACTGGAATGT+GGG 0.675743 6_2:-62198756 None:intergenic
GCATGATGAAGCTAGCACAA+AGG 0.680662 6_2:+62197785 Msa0922750:CDS
TCAAACCTAGGGAACAATGG+TGG 0.694105 6_2:+62198872 Msa0922750:CDS
TTGGAGGACCACCACAAGAG+GGG 0.698087 6_2:-62195486 None:intergenic
ACCAATTGCATAGAACCACT+AGG 0.707017 6_2:-62196787 None:intergenic
AGTATCATAGTGGAGCAAGT+GGG 0.711511 6_2:+62194564 Msa0922750:CDS
TCTGATTAGCAGTGTGACGG+TGG 0.712245 6_2:-62194658 None:intergenic
TCAATGAATGTAGCAATGAG+TGG 0.714910 6_2:+62198722 Msa0922750:CDS
GATACTTCAAGAAAGCTGTG+TGG 0.771950 6_2:+62198655 Msa0922750:CDS
ATGATGATGATGATCACCAG+GGG 0.774959 6_2:-62194588 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAATATATAAAAAAA+TGG - chr6_2:62194799-62194818 None:intergenic 0.0%
!! TTATTATTATTATAAAATTT+AGG + chr6_2:62195246-62195265 Msa0922750:intron 0.0%
!!! TAATTATGTGTTATTTTAAT+TGG + chr6_2:62195339-62195358 Msa0922750:intron 10.0%
!! TGAATAAAGTTAATAATATT+TGG - chr6_2:62195593-62195612 None:intergenic 10.0%
!! ATAAAAAATAAATAAAATGG+AGG - chr6_2:62198228-62198247 None:intergenic 10.0%
!! TGGATAAAAAATAAATAAAA+TGG - chr6_2:62198231-62198250 None:intergenic 10.0%
!! TACTGAAGAAAAAAAAAATA+GGG - chr6_2:62194825-62194844 None:intergenic 15.0%
!! ATACTGAAGAAAAAAAAAAT+AGG - chr6_2:62194826-62194845 None:intergenic 15.0%
!!! TGTGTATTTTATATTTATGT+TGG + chr6_2:62195141-62195160 Msa0922750:intron 15.0%
!! AAAATTAAAACAAGTAAACA+TGG - chr6_2:62196059-62196078 None:intergenic 15.0%
!!! ATTTACAATGTACTTTTATA+TGG + chr6_2:62196087-62196106 Msa0922750:intron 15.0%
!!! TTTTATATGGTCAATTTAAA+TGG + chr6_2:62196100-62196119 Msa0922750:intron 15.0%
!!! TTAATAAAGCATTAATTCAA+AGG - chr6_2:62197148-62197167 None:intergenic 15.0%
!!! TTTTTTTTGTTTTTGTTTAG+TGG + chr6_2:62198102-62198121 Msa0922750:intron 15.0%
!!! TTTTTTTGTTTTTGTTTAGT+GGG + chr6_2:62198103-62198122 Msa0922750:intron 15.0%
!! AAAGAAACATGAATTAATGA+AGG + chr6_2:62195007-62195026 Msa0922750:intron 20.0%
!!! TCAAATTGTGTATTTTTTTC+TGG + chr6_2:62195051-62195070 Msa0922750:intron 20.0%
!!! ATAAAGTTTGTGTATTTTTC+TGG + chr6_2:62195180-62195199 Msa0922750:intron 20.0%
!! ATTATAAAATTTAGGAGAGT+TGG + chr6_2:62195254-62195273 Msa0922750:intron 20.0%
!! TTATAAAATTTAGGAGAGTT+GGG + chr6_2:62195255-62195274 Msa0922750:intron 20.0%
!!! GTTATTTTAATTGGATTTTG+TGG + chr6_2:62195348-62195367 Msa0922750:intron 20.0%
!! AAATTGAACAAAACATTTGT+AGG + chr6_2:62195753-62195772 Msa0922750:intron 20.0%
!! AATTGAACAAAACATTTGTA+GGG + chr6_2:62195754-62195773 Msa0922750:intron 20.0%
!!! AAAAAGATCGTGATTTTTAT+AGG + chr6_2:62195787-62195806 Msa0922750:intron 20.0%
!! TTAATCTTGAAAACTATGAA+AGG + chr6_2:62196473-62196492 Msa0922750:CDS 20.0%
!! TGATAATCGATATACAAATT+CGG - chr6_2:62196861-62196880 None:intergenic 20.0%
!!! GTTACTCTTGTATATTTTAT+AGG + chr6_2:62197197-62197216 Msa0922750:intron 20.0%
!!! CTTCTAAAACAGTTATATTA+TGG - chr6_2:62197551-62197570 None:intergenic 20.0%
!! ATAAAAAACATTTCATCCTA+AGG - chr6_2:62198069-62198088 None:intergenic 20.0%
!! ATTAGAATCGAAATTAAATC+CGG - chr6_2:62198577-62198596 None:intergenic 20.0%
!!! TGTGAATTTTCAAATGTAAT+AGG + chr6_2:62198604-62198623 Msa0922750:intron 20.0%
!! TTCATTGATGTTAATTCAAT+TGG - chr6_2:62198710-62198729 None:intergenic 20.0%
!!! TTTTTTCTTCAGTATGTTCA+AGG + chr6_2:62194831-62194850 Msa0922750:intron 25.0%
!! TTAATTGGATTTTGTGGTTT+TGG + chr6_2:62195354-62195373 Msa0922750:intron 25.0%
! ATGTGAGAATATAGCTATAA+GGG + chr6_2:62195441-62195460 Msa0922750:CDS 25.0%
! AAGAAACAATCATCATTGAT+TGG - chr6_2:62195508-62195527 None:intergenic 25.0%
!!! GTACAATTTTAGTCTCTATA+AGG + chr6_2:62195726-62195745 Msa0922750:intron 25.0%
!!! TATAAAGGATTTTAAGGTCT+CGG - chr6_2:62195998-62196017 None:intergenic 25.0%
!! CAGCAATATAAAGGATTTTA+AGG - chr6_2:62196004-62196023 None:intergenic 25.0%
! ATTCAAAGGTTATATTACCT+TGG - chr6_2:62197134-62197153 None:intergenic 25.0%
!! TGTATATTTTATAGGTCACT+TGG + chr6_2:62197205-62197224 Msa0922750:intron 25.0%
! TATAGAAATGCTATCTATAG+TGG + chr6_2:62197273-62197292 Msa0922750:CDS 25.0%
! AAGAAATTGAAAACAGTTTG+TGG - chr6_2:62197979-62197998 None:intergenic 25.0%
! TCAATTTCTTCAAAGATGAA+AGG + chr6_2:62197989-62198008 Msa0922750:CDS 25.0%
!!! TTATCCACTTTGTTTTCAAT+CGG + chr6_2:62198244-62198263 Msa0922750:intron 25.0%
! GATAACAATAACAATCTTCA+AGG + chr6_2:62198812-62198831 Msa0922750:CDS 25.0%
! GTAAACTACTAACCATTATT+TGG - chr6_2:62198928-62198947 None:intergenic 25.0%
! TCAAAAATGGAGTATCATAG+TGG + chr6_2:62194554-62194573 Msa0922750:exon 30.0%
AACCAAAATTTGATCTGTCT+AGG - chr6_2:62194916-62194935 None:intergenic 30.0%
!!! AATTTTGGTTTCAGAACAGA+AGG + chr6_2:62194926-62194945 Msa0922750:CDS 30.0%
!!! GGTCTTATTAGTTTTTCTCA+TGG + chr6_2:62195028-62195047 Msa0922750:intron 30.0%
!!! TTTTGTGGTTTTGGTTAAAC+AGG + chr6_2:62195363-62195382 Msa0922750:intron 30.0%
GATGTGAGAATATAGCTATA+AGG + chr6_2:62195440-62195459 Msa0922750:CDS 30.0%
! AAACAATCATCATTGATTGG+AGG - chr6_2:62195505-62195524 None:intergenic 30.0%
! AACATTTTGCCGCAAAATAA+AGG - chr6_2:62195866-62195885 None:intergenic 30.0%
CAATTGCAACCAAAACATAA+AGG - chr6_2:62195923-62195942 None:intergenic 30.0%
TTTGGTTGCAATTGCAATTA+CGG + chr6_2:62195929-62195948 Msa0922750:intron 30.0%
! CAAATTTTACGTAGCAAATG+TGG + chr6_2:62195954-62195973 Msa0922750:intron 30.0%
CAATTACAGCAGCAATATAA+AGG - chr6_2:62196013-62196032 None:intergenic 30.0%
ACCAATTCACATTTCATCAT+TGG + chr6_2:62196210-62196229 Msa0922750:CDS 30.0%
TCCAATGATGAAATGTGAAT+TGG - chr6_2:62196214-62196233 None:intergenic 30.0%
TTCATCATTGGACTTATCAA+TGG + chr6_2:62196222-62196241 Msa0922750:CDS 30.0%
TCATCATTGGACTTATCAAT+GGG + chr6_2:62196223-62196242 Msa0922750:CDS 30.0%
! GACTTATCAATGGGAAATTT+TGG + chr6_2:62196232-62196251 Msa0922750:CDS 30.0%
! TTATCAATGGGAAATTTTGG+TGG + chr6_2:62196235-62196254 Msa0922750:CDS 30.0%
!! TATCAATGGGAAATTTTGGT+GGG + chr6_2:62196236-62196255 Msa0922750:CDS 30.0%
TGTTCCCTAAGACTAATAAT+CGG + chr6_2:62196497-62196516 Msa0922750:CDS 30.0%
!! TCAACCGATTATTAGTCTTA+GGG - chr6_2:62196504-62196523 None:intergenic 30.0%
!! TTCAACCGATTATTAGTCTT+AGG - chr6_2:62196505-62196524 None:intergenic 30.0%
! AGCTTTGGTTGAAATGTTTA+TGG + chr6_2:62196585-62196604 Msa0922750:CDS 30.0%
GAACATGAATAAGTACTTAC+TGG - chr6_2:62196613-62196632 None:intergenic 30.0%
ACTATTGAAGTTATCTCTTC+TGG + chr6_2:62196751-62196770 Msa0922750:CDS 30.0%
AAGAAGTAGAATTCTCTGAT+AGG - chr6_2:62196965-62196984 None:intergenic 30.0%
AAGACAAAAATCCAGTTCAT+AGG + chr6_2:62197247-62197266 Msa0922750:CDS 30.0%
TTTCTATAAAGCCTATGAAC+TGG - chr6_2:62197261-62197280 None:intergenic 30.0%
!! TCTCTAAAACTGTTGTATTG+TGG - chr6_2:62197508-62197527 None:intergenic 30.0%
!!! TACAACAGTTTTAGAGACAT+CGG + chr6_2:62197511-62197530 Msa0922750:intron 30.0%
! TTTGTTTGCATTTTACTGCA+AGG + chr6_2:62197606-62197625 Msa0922750:intron 30.0%
AATTGAAAACAGTTTGTGGA+GGG - chr6_2:62197975-62197994 None:intergenic 30.0%
AAATTGAAAACAGTTTGTGG+AGG - chr6_2:62197976-62197995 None:intergenic 30.0%
TGATTTGATTCTATGACCTT+AGG + chr6_2:62198050-62198069 Msa0922750:intron 30.0%
ACACGTTGCAACTAAAAAAT+GGG - chr6_2:62198497-62198516 None:intergenic 30.0%
AACACGTTGCAACTAAAAAA+TGG - chr6_2:62198498-62198517 None:intergenic 30.0%
AATAACAATCTTCAAGGAAG+TGG + chr6_2:62198818-62198837 Msa0922750:CDS 30.0%
AACAGTTGCATTCCAAATAA+TGG + chr6_2:62198913-62198932 Msa0922750:CDS 30.0%
ACACTGCTAATCAGATTCAA+AGG + chr6_2:62194666-62194685 Msa0922750:CDS 35.0%
! GTTAAGCAGAGAATTAGCTT+TGG + chr6_2:62194888-62194907 Msa0922750:CDS 35.0%
! CTCCTAGACAGATCAAATTT+TGG + chr6_2:62194911-62194930 Msa0922750:CDS 35.0%
! CAAATAAAGCTTTGACCATG+AGG - chr6_2:62195290-62195309 None:intergenic 35.0%
AAATGTGCAACTCAAAGAAG+AGG + chr6_2:62195552-62195571 Msa0922750:CDS 35.0%
!!! TGCCGTAAACCTTTATTTTG+CGG + chr6_2:62195854-62195873 Msa0922750:intron 35.0%
TGCCGCAAAATAAAGGTTTA+CGG - chr6_2:62195859-62195878 None:intergenic 35.0%
CCAAAACATAAAGGACTTTG+AGG - chr6_2:62195914-62195933 None:intergenic 35.0%
! CCTCAAAGTCCTTTATGTTT+TGG + chr6_2:62195911-62195930 Msa0922750:intron 35.0%
!! GATTGGTCTTCCAATGTATT+TGG - chr6_2:62196170-62196189 None:intergenic 35.0%
AGAAGATCAAGATCAAGTGA+AGG - chr6_2:62196280-62196299 None:intergenic 35.0%
! GAGATTTTTCCATGTCAGAA+AGG - chr6_2:62196351-62196370 None:intergenic 35.0%
TGACATTGCATCAAATGCAA+TGG + chr6_2:62196378-62196397 Msa0922750:CDS 35.0%
ATGCAATGGAAGAGATGATT+AGG + chr6_2:62196392-62196411 Msa0922750:CDS 35.0%
! GAGTTTGATTTCATCCATAG+AGG - chr6_2:62196436-62196455 None:intergenic 35.0%
TGGATGAAATCAAACTCTGA+TGG + chr6_2:62196439-62196458 Msa0922750:CDS 35.0%
GAAGCTTCAATGCGAATATT+CGG - chr6_2:62196532-62196551 None:intergenic 35.0%
! TCTCGTGTTGTTATCATGAA+TGG + chr6_2:62196559-62196578 Msa0922750:CDS 35.0%
TATCATGAATGGCTTAGCTT+TGG + chr6_2:62196570-62196589 Msa0922750:CDS 35.0%
!! GATTGATTTTTCAGAACCAG+TGG + chr6_2:62196692-62196711 Msa0922750:intron 35.0%
!! AGTTATCTCTTCTGGAATGA+TGG + chr6_2:62196759-62196778 Msa0922750:CDS 35.0%
!! GTTATCTCTTCTGGAATGAT+GGG + chr6_2:62196760-62196779 Msa0922750:CDS 35.0%
AATTCTCTGATAGGAACAAG+TGG - chr6_2:62196956-62196975 None:intergenic 35.0%
GCAAATTGAGCAAGGTTTAT+GGG + chr6_2:62196997-62197016 Msa0922750:CDS 35.0%
GTTGTCATGAGGAAAATCAT+AGG - chr6_2:62197038-62197057 None:intergenic 35.0%
TTCATTCAAGACATGCCTAA+TGG + chr6_2:62197103-62197122 Msa0922750:CDS 35.0%
! TGAAAGACTTGCTTGTTCTA+TGG + chr6_2:62197344-62197363 Msa0922750:CDS 35.0%
GCAATTTGCAATCATGATTG+CGG + chr6_2:62197482-62197501 Msa0922750:intron 35.0%
!! TGGTTCTAAATAACAGATGC+AGG - chr6_2:62197643-62197662 None:intergenic 35.0%
! CGCATTGATACATATGCATA+TGG - chr6_2:62197663-62197682 None:intergenic 35.0%
TGCTTGTGATCTAAAAGTCA+TGG + chr6_2:62197718-62197737 Msa0922750:intron 35.0%
!! ACACTTTCAGCTTTGAATGA+GGG + chr6_2:62197862-62197881 Msa0922750:CDS 35.0%
AGATGAAAGGAAAAGATCAC+AGG + chr6_2:62198002-62198021 Msa0922750:CDS 35.0%
TAGTGGGATGTTCTTTCTAA+TGG + chr6_2:62198119-62198138 Msa0922750:intron 35.0%
GAAGTTGCTCATATTGCAAA+TGG + chr6_2:62198155-62198174 Msa0922750:CDS 35.0%
AAATTAAATCCGGCGAACTA+GGG - chr6_2:62198567-62198586 None:intergenic 35.0%
TCAATGAATGTAGCAATGAG+TGG + chr6_2:62198722-62198741 Msa0922750:CDS 35.0%
! AGTGGTAATGTTAATGCTGA+TGG + chr6_2:62198836-62198855 Msa0922750:CDS 35.0%
ACCATCTGCTAAACTTAACA+TGG + chr6_2:62198946-62198965 Msa0922750:CDS 35.0%
TCCATGTTAAGTTTAGCAGA+TGG - chr6_2:62198950-62198969 None:intergenic 35.0%
!! GCAACTGTTAATGGACTTAT+TGG + chr6_2:62198977-62198996 Msa0922750:CDS 35.0%
! TTAAAGCAGCTTTGATGTGT+TGG - chr6_2:62199012-62199031 None:intergenic 35.0%
! AGTATCATAGTGGAGCAAGT+GGG + chr6_2:62194564-62194583 Msa0922750:CDS 40.0%
! ATGATGATGATGATCACCAG+GGG - chr6_2:62194591-62194610 None:intergenic 40.0%
! GATGATGATGATGATCACCA+GGG - chr6_2:62194592-62194611 None:intergenic 40.0%
! TGATGATGATGATGATCACC+AGG - chr6_2:62194593-62194612 None:intergenic 40.0%
CATCATCATCATCACCATGA+AGG + chr6_2:62194602-62194621 Msa0922750:CDS 40.0%
GAGAATCAGAAGAACCTTCA+TGG - chr6_2:62194619-62194638 None:intergenic 40.0%
GAATCTGATTAGCAGTGTGA+CGG - chr6_2:62194664-62194683 None:intergenic 40.0%
! CTTTGTTTCTCATCAGGATG+AGG - chr6_2:62194862-62194881 None:intergenic 40.0%
CTCATCCTGATGAGAAACAA+AGG + chr6_2:62194860-62194879 Msa0922750:CDS 40.0%
! TGCAACCTTTGTTTCTCATC+AGG - chr6_2:62194868-62194887 None:intergenic 40.0%
GAGCTGATAACTGTCAACTA+AGG + chr6_2:62195398-62195417 Msa0922750:CDS 40.0%
! GGGGCAGATCACATTTTTAA+GGG - chr6_2:62195470-62195489 None:intergenic 40.0%
! AGGGGCAGATCACATTTTTA+AGG - chr6_2:62195471-62195490 None:intergenic 40.0%
AGCATTGCTGCCAAATACAT+TGG + chr6_2:62196157-62196176 Msa0922750:CDS 40.0%
GAAATGTGAATTGGTGCAAC+TGG - chr6_2:62196205-62196224 None:intergenic 40.0%
!! AAATTTTGGTGGGCATGGAA+TGG + chr6_2:62196246-62196265 Msa0922750:CDS 40.0%
CTTGATCTTGATCTTCTACC+TGG + chr6_2:62196283-62196302 Msa0922750:CDS 40.0%
!! TGCATAGTTGATGAACTTCC+AGG - chr6_2:62196304-62196323 None:intergenic 40.0%
ATATTCGCATTGAAGCTTCG+AGG + chr6_2:62196533-62196552 Msa0922750:CDS 40.0%
TATTCGCATTGAAGCTTCGA+GGG + chr6_2:62196534-62196553 Msa0922750:CDS 40.0%
!! GATTTTTCAGAACCAGTGGA+TGG + chr6_2:62196696-62196715 Msa0922750:intron 40.0%
CTTTCCTACTATTGTGACCA+TGG + chr6_2:62196723-62196742 Msa0922750:CDS 40.0%
AACTTCAATAGTCCTTGCCA+TGG - chr6_2:62196743-62196762 None:intergenic 40.0%
! TCCTAGTGGTTCTATGCAAT+TGG + chr6_2:62196786-62196805 Msa0922750:CDS 40.0%
ACCAATTGCATAGAACCACT+AGG - chr6_2:62196790-62196809 None:intergenic 40.0%
TACTGTACGCAAATTGAGCA+AGG + chr6_2:62196989-62197008 Msa0922750:CDS 40.0%
CGCAAATTGAGCAAGGTTTA+TGG + chr6_2:62196996-62197015 Msa0922750:CDS 40.0%
! ACCAATTTGCTCCGCAATTT+CGG + chr6_2:62197056-62197075 Msa0922750:CDS 40.0%
TCTTGAATGAAGCAACCAGA+AGG - chr6_2:62197094-62197113 None:intergenic 40.0%
ATTACCTTGGAGTAGCCATT+AGG - chr6_2:62197121-62197140 None:intergenic 40.0%
GGTCACTTGGATTGAACATT+TGG + chr6_2:62197218-62197237 Msa0922750:intron 40.0%
! ATCTATAGTGGAGCTGCATT+TGG + chr6_2:62197285-62197304 Msa0922750:CDS 40.0%
CTCATTCAAAGCTGAAAGTG+TGG - chr6_2:62197863-62197882 None:intergenic 40.0%
!! CACACTTTCAGCTTTGAATG+AGG + chr6_2:62197861-62197880 Msa0922750:CDS 40.0%
!! GTTAGGAAAAGTACTGAGCT+TGG + chr6_2:62197898-62197917 Msa0922750:CDS 40.0%
TATGTGCAGCTACTACCATT+TGG + chr6_2:62197941-62197960 Msa0922750:CDS 40.0%
! CTCACCGATTGAAAACAAAG+TGG - chr6_2:62198251-62198270 None:intergenic 40.0%
!!! CTTTGTTTTCAATCGGTGAG+AGG + chr6_2:62198251-62198270 Msa0922750:intron 40.0%
GCAATGTTATAATTGTGCCG+AGG - chr6_2:62198282-62198301 None:intergenic 40.0%
AATTTGAACACGTGACCTCA+GGG - chr6_2:62198315-62198334 None:intergenic 40.0%
GAAATTAAATCCGGCGAACT+AGG - chr6_2:62198568-62198587 None:intergenic 40.0%
GATACTTCAAGAAAGCTGTG+TGG + chr6_2:62198655-62198674 Msa0922750:CDS 40.0%
!! TGAAGGTGTTACTGGAATGT+GGG - chr6_2:62198759-62198778 None:intergenic 40.0%
GAAGTGATTGTGAAACCTGA+AGG - chr6_2:62198776-62198795 None:intergenic 40.0%
GGTTTCACAATCACTTCTGA+TGG + chr6_2:62198779-62198798 Msa0922750:CDS 40.0%
CATCAACAAGCTCAAACCTA+GGG + chr6_2:62198861-62198880 Msa0922750:CDS 40.0%
GAGTCTGTTGCAACTGTTAA+TGG + chr6_2:62198968-62198987 Msa0922750:CDS 40.0%
! GAGTATCATAGTGGAGCAAG+TGG + chr6_2:62194563-62194582 Msa0922750:CDS 45.0%
GAACAGAAGGACTCAGATGA+AGG + chr6_2:62194939-62194958 Msa0922750:CDS 45.0%
! GCGGCAAAATGTTGTTGACT+CGG + chr6_2:62195873-62195892 Msa0922750:intron 45.0%
TGCTGCTGTAATTGCGTTTG+TGG + chr6_2:62196019-62196038 Msa0922750:intron 45.0%
ATGTGAATTGGTGCAACTGG+TGG - chr6_2:62196202-62196221 None:intergenic 45.0%
!! ATGGGAAATTTTGGTGGGCA+TGG + chr6_2:62196241-62196260 Msa0922750:CDS 45.0%
TGCAGACTAATGAGCCTCTA+TGG + chr6_2:62196419-62196438 Msa0922750:CDS 45.0%
CTTGCCATGGTCACAATAGT+AGG - chr6_2:62196730-62196749 None:intergenic 45.0%
CTACTATTGTGACCATGGCA+AGG + chr6_2:62196728-62196747 Msa0922750:CDS 45.0%
!! ATCTCTTCTGGAATGATGGG+TGG + chr6_2:62196763-62196782 Msa0922750:CDS 45.0%
GGAGCAAATTGGTTGTCATG+AGG - chr6_2:62197049-62197068 None:intergenic 45.0%
ACCGAAATTGCGGAGCAAAT+TGG - chr6_2:62197060-62197079 None:intergenic 45.0%
! CTGCATTTGGAGCTGAAAGA+TGG + chr6_2:62197298-62197317 Msa0922750:CDS 45.0%
GATGGCTCACTACTCTTCAA+AGG + chr6_2:62197316-62197335 Msa0922750:CDS 45.0%
AGACATCGGCAACATGATTG+TGG + chr6_2:62197525-62197544 Msa0922750:intron 45.0%
AACTGCAATCGTGGTTGCAT+CGG + chr6_2:62197578-62197597 Msa0922750:intron 45.0%
GCATGATGAAGCTAGCACAA+AGG + chr6_2:62197785-62197804 Msa0922750:CDS 45.0%
GATGAAGCTAGCACAAAGGA+TGG + chr6_2:62197789-62197808 Msa0922750:CDS 45.0%
GTGCATCAGCTAGTCATAGA+TGG + chr6_2:62197836-62197855 Msa0922750:CDS 45.0%
AGGGAGTCAGAGTTACTGTT+AGG + chr6_2:62197881-62197900 Msa0922750:CDS 45.0%
AAAACAGTTTGTGGAGGGAG+AGG - chr6_2:62197970-62197989 None:intergenic 45.0%
ATTGCAAATGGTTCTCACCC+TGG + chr6_2:62198167-62198186 Msa0922750:CDS 45.0%
CAACTCCATCTCTGTGCTTA+GGG + chr6_2:62198190-62198209 Msa0922750:CDS 45.0%
TCTTACCCTAAGCACAGAGA+TGG - chr6_2:62198198-62198217 None:intergenic 45.0%
GAATTTGAACACGTGACCTC+AGG - chr6_2:62198316-62198335 None:intergenic 45.0%
GAGGTCACGTGTTCAAATTC+TGG + chr6_2:62198316-62198335 Msa0922750:intron 45.0%
TCAAGCGGCAAACATGTACT+CGG - chr6_2:62198371-62198390 None:intergenic 45.0%
! ATAAGGAGGGCACATGTACT+CGG - chr6_2:62198450-62198469 None:intergenic 45.0%
AACGCTCACACGTATAAGGA+GGG - chr6_2:62198463-62198482 None:intergenic 45.0%
CATGAACGCTCACACGTATA+AGG - chr6_2:62198467-62198486 None:intergenic 45.0%
!! TTTTAGTTGCCCTAGTTCGC+CGG + chr6_2:62198555-62198574 Msa0922750:intron 45.0%
GAAAGCTGTGTGGATTCATC+AGG + chr6_2:62198665-62198684 Msa0922750:CDS 45.0%
!! CTGAAGGTGTTACTGGAATG+TGG - chr6_2:62198760-62198779 None:intergenic 45.0%
CACATTCCAGTAACACCTTC+AGG + chr6_2:62198758-62198777 Msa0922750:CDS 45.0%
!! GTGAAACCTGAAGGTGTTAC+TGG - chr6_2:62198767-62198786 None:intergenic 45.0%
GCATCAACAAGCTCAAACCT+AGG + chr6_2:62198860-62198879 Msa0922750:CDS 45.0%
AGCTCAAACCTAGGGAACAA+TGG + chr6_2:62198869-62198888 Msa0922750:CDS 45.0%
TCAAACCTAGGGAACAATGG+TGG + chr6_2:62198872-62198891 Msa0922750:CDS 45.0%
!!! TATTTTTTTATATTATTTTC+TGG + chr6_2:62195098-62195117 Msa0922750:intron 5.0%
!!! TTAAAAAATTGTAATTTTAT+AGG - chr6_2:62195683-62195702 None:intergenic 5.0%
!! AATTAAAAATATATTTAACT+CGG + chr6_2:62195810-62195829 Msa0922750:intron 5.0%
TCTGATTAGCAGTGTGACGG+TGG - chr6_2:62194661-62194680 None:intergenic 50.0%
GCTTTGACCATGAGGAGACT+AGG - chr6_2:62195282-62195301 None:intergenic 50.0%
AATGTGATCTGCCCCTCTTG+TGG + chr6_2:62195475-62195494 Msa0922750:CDS 50.0%
ATTGGAGGACCACCACAAGA+GGG - chr6_2:62195490-62195509 None:intergenic 50.0%
ACTGGTGGAAGCTGTGTGAT+TGG - chr6_2:62196187-62196206 None:intergenic 50.0%
! TTTGGTGGGCATGGAATGGT+TGG + chr6_2:62196250-62196269 Msa0922750:CDS 50.0%
! GAAAGGCAAGCTGGTTGGTA+AGG - chr6_2:62196334-62196353 None:intergenic 50.0%
TGTCAGAAAGGCAAGCTGGT+TGG - chr6_2:62196339-62196358 None:intergenic 50.0%
ACCAGCTTGCCTTTCTGACA+TGG + chr6_2:62196339-62196358 Msa0922750:CDS 50.0%
TCCATGTCAGAAAGGCAAGC+TGG - chr6_2:62196343-62196362 None:intergenic 50.0%
TAGGAAAGAGAGCCATCCAC+TGG - chr6_2:62196711-62196730 None:intergenic 50.0%
! AGTCGATGGCACCGAAATTG+CGG - chr6_2:62197070-62197089 None:intergenic 50.0%
AGCAACCAGAAGGAAGTCGA+TGG - chr6_2:62197084-62197103 None:intergenic 50.0%
CATGCCTAATGGCTACTCCA+AGG + chr6_2:62197114-62197133 Msa0922750:CDS 50.0%
TATACCTCCACCGAGATCAC+GGG - chr6_2:62197379-62197398 None:intergenic 50.0%
GTATACCTCCACCGAGATCA+CGG - chr6_2:62197380-62197399 None:intergenic 50.0%
AGTCCAAGCAACTGCAATCG+TGG + chr6_2:62197569-62197588 Msa0922750:intron 50.0%
CAACCACGATTGCAGTTGCT+TGG - chr6_2:62197575-62197594 None:intergenic 50.0%
TTCAGCGATTCCATCACCTG+AGG + chr6_2:62197753-62197772 Msa0922750:intron 50.0%
TCAGCGATTCCATCACCTGA+GGG + chr6_2:62197754-62197773 Msa0922750:intron 50.0%
ATCATGCTGCTCTTTCCCTC+AGG - chr6_2:62197772-62197791 None:intergenic 50.0%
GCACATAGCACAACACCACT+AGG - chr6_2:62197928-62197947 None:intergenic 50.0%
GCAACTCCATCTCTGTGCTT+AGG + chr6_2:62198189-62198208 Msa0922750:CDS 50.0%
ATCGGTGAGAGGATGATCCT+CGG + chr6_2:62198262-62198281 Msa0922750:intron 50.0%
GAAACAGTCTCTCCTCTAGC+AGG + chr6_2:62198338-62198357 Msa0922750:intron 50.0%
! ATGTTTGCCGCTTGACACAG+TGG + chr6_2:62198376-62198395 Msa0922750:intron 50.0%
GTGGTCACGAGTTCAAATCC+TGG + chr6_2:62198395-62198414 Msa0922750:intron 50.0%
CTAGAGGAGAGACTGTTTCC+AGG - chr6_2:62198337-62198356 None:intergenic 50.0%
GAAACAGTCTCTCCTCTAGC+AGG + chr6_2:62198338-62198357 Msa0922750:intron 50.0%
GAACGCTCACACGTATAAGG+AGG - chr6_2:62198464-62198483 None:intergenic 50.0%
CGTGTGAGCGTTCATGTACT+CGG + chr6_2:62198471-62198490 Msa0922750:intron 50.0%
CACTTCCACCATTGTTCCCT+AGG - chr6_2:62198880-62198899 None:intergenic 50.0%
! CTAGGGAACAATGGTGGAAG+TGG + chr6_2:62198878-62198897 Msa0922750:CDS 50.0%
GTTGGGTCCTAGTCTCCTCA+TGG + chr6_2:62195272-62195291 Msa0922750:intron 55.0%
TTGGAGGACCACCACAAGAG+GGG - chr6_2:62195489-62195508 None:intergenic 55.0%
GATTGGAGGACCACCACAAG+AGG - chr6_2:62195491-62195510 None:intergenic 55.0%
!! GGAATGATGGGTGGTCCTAG+TGG + chr6_2:62196772-62196791 Msa0922750:CDS 55.0%
GTTTCTGCCACCCGTGATCT+CGG + chr6_2:62197366-62197385 Msa0922750:CDS 55.0%
CTGCTCTTTCCCTCAGGTGA+TGG - chr6_2:62197766-62197785 None:intergenic 55.0%
ACTGAGCTTGGTCAGCCTAG+TGG + chr6_2:62197910-62197929 Msa0922750:CDS 55.0%
TGGAGGGAGAGGTAGCCAAA+TGG - chr6_2:62197959-62197978 None:intergenic 55.0%
GCACAGAGATGGAGTTGCCA+GGG - chr6_2:62198187-62198206 None:intergenic 55.0%
AGCACAGAGATGGAGTTGCC+AGG - chr6_2:62198188-62198207 None:intergenic 55.0%
CTCGGTCTTACTCCTGCTAG+AGG - chr6_2:62198353-62198372 None:intergenic 55.0%
CTCGTGACCACTGTGTCAAG+CGG - chr6_2:62198386-62198405 None:intergenic 55.0%
CTCGGTCTTTCTCCTGCTAG+AGG - chr6_2:62198432-62198451 None:intergenic 55.0%
! GGGAACAATGGTGGAAGTGG+AGG + chr6_2:62198881-62198900 Msa0922750:CDS 55.0%
GTGATCTGCCCCTCTTGTGG+TGG + chr6_2:62195478-62195497 Msa0922750:CDS 60.0%
GGTGGGCATGGAATGGTTGG+AGG + chr6_2:62196253-62196272 Msa0922750:CDS 60.0%
!! CGGTGCCATCGACTTCCTTC+TGG + chr6_2:62197076-62197095 Msa0922750:CDS 60.0%
ATTGCCGCCTTGTGACCCTG+AGG + chr6_2:62198297-62198316 Msa0922750:intron 60.0%
GTGACCTCAGGGTCACAAGG+CGG - chr6_2:62198304-62198323 None:intergenic 60.0%
CACGTGACCTCAGGGTCACA+AGG - chr6_2:62198307-62198326 None:intergenic 60.0%
AGTGGAGCAAGTGGGTCCCC+TGG + chr6_2:62194572-62194591 Msa0922750:CDS 65.0%
TCTGCCACCCGTGATCTCGG+TGG + chr6_2:62197369-62197388 Msa0922750:CDS 65.0%
ACCTCCACCGAGATCACGGG+TGG - chr6_2:62197376-62197395 None:intergenic 65.0%
GCCACCCGTGATCTCGGTGG+AGG + chr6_2:62197372-62197391 Msa0922750:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 62194546 62199048 62194546 ID=Msa0922750;Name=Msa0922750
chr6_2 mRNA 62194546 62199048 62194546 ID=Msa0922750-mRNA-1;Parent=Msa0922750;Name=Msa0922750-mRNA-1;_AED=0.07;_eAED=0.07;_QI=14|1|0.8|1|1|1|10|0|726
chr6_2 exon 62194546 62194696 62194546 ID=Msa0922750-mRNA-1:exon:9605;Parent=Msa0922750-mRNA-1
chr6_2 exon 62194843 62194960 62194843 ID=Msa0922750-mRNA-1:exon:9606;Parent=Msa0922750-mRNA-1
chr6_2 exon 62195385 62195573 62195385 ID=Msa0922750-mRNA-1:exon:9607;Parent=Msa0922750-mRNA-1
chr6_2 exon 62196142 62196612 62196142 ID=Msa0922750-mRNA-1:exon:9608;Parent=Msa0922750-mRNA-1
chr6_2 exon 62196706 62196807 62196706 ID=Msa0922750-mRNA-1:exon:9609;Parent=Msa0922750-mRNA-1
chr6_2 exon 62196926 62197135 62196926 ID=Msa0922750-mRNA-1:exon:9610;Parent=Msa0922750-mRNA-1
chr6_2 exon 62197219 62197393 62197219 ID=Msa0922750-mRNA-1:exon:9611;Parent=Msa0922750-mRNA-1
chr6_2 exon 62197758 62198023 62197758 ID=Msa0922750-mRNA-1:exon:9612;Parent=Msa0922750-mRNA-1
chr6_2 exon 62198122 62198211 62198122 ID=Msa0922750-mRNA-1:exon:9613;Parent=Msa0922750-mRNA-1
chr6_2 exon 62198626 62199048 62198626 ID=Msa0922750-mRNA-1:exon:9614;Parent=Msa0922750-mRNA-1
chr6_2 five_prime_UTR 62194546 62194559 62194546 ID=Msa0922750-mRNA-1:five_prime_utr;Parent=Msa0922750-mRNA-1
chr6_2 CDS 62194560 62194696 62194560 ID=Msa0922750-mRNA-1:cds;Parent=Msa0922750-mRNA-1
chr6_2 CDS 62194843 62194960 62194843 ID=Msa0922750-mRNA-1:cds;Parent=Msa0922750-mRNA-1
chr6_2 CDS 62195385 62195573 62195385 ID=Msa0922750-mRNA-1:cds;Parent=Msa0922750-mRNA-1
chr6_2 CDS 62196142 62196612 62196142 ID=Msa0922750-mRNA-1:cds;Parent=Msa0922750-mRNA-1
chr6_2 CDS 62196706 62196807 62196706 ID=Msa0922750-mRNA-1:cds;Parent=Msa0922750-mRNA-1
chr6_2 CDS 62196926 62197135 62196926 ID=Msa0922750-mRNA-1:cds;Parent=Msa0922750-mRNA-1
chr6_2 CDS 62197219 62197393 62197219 ID=Msa0922750-mRNA-1:cds;Parent=Msa0922750-mRNA-1
chr6_2 CDS 62197758 62198023 62197758 ID=Msa0922750-mRNA-1:cds;Parent=Msa0922750-mRNA-1
chr6_2 CDS 62198122 62198211 62198122 ID=Msa0922750-mRNA-1:cds;Parent=Msa0922750-mRNA-1
chr6_2 CDS 62198626 62199048 62198626 ID=Msa0922750-mRNA-1:cds;Parent=Msa0922750-mRNA-1
Gene Sequence

>Msa0922750

ATGGAGTATCATAGTGGAGCAAGTGGGTCCCCTGGTGATCATCATCATCATCATCACCATGAAGGTTCTTCTGATTCTCAGAGAAGAAAGAAACGTTACCACCGTCACACTGCTAATCAGATTCAAAGGCTTGAAGCTATGTTCAAGGAGTGTCCTCATCCTGATGAGAAACAAAGGTTGCAGTTAAGCAGAGAATTAGCTTTGGCTCCTAGACAGATCAAATTTTGGTTTCAGAACAGAAGGACTCAGATGAAGGCACAGCATGAAAGAGCTGATAACTGTCAACTAAGGCAAGAGAATGATAAAATAAGATGTGAGAATATAGCTATAAGGGAAGCCCTTAAAAATGTGATCTGCCCCTCTTGTGGTGGTCCTCCAATCAATGATGATTGTTTCTTTGATGAACAAAAGCTGAGAATTGAAAATGTGCAACTCAAAGAAGAGCTTGATAGAGTATCAAGCATTGCTGCCAAATACATTGGAAGACCAATCACACAGCTTCCACCAGTTGCACCAATTCACATTTCATCATTGGACTTATCAATGGGAAATTTTGGTGGGCATGGAATGGTTGGAGGACCTTCACTTGATCTTGATCTTCTACCTGGAAGTTCATCAACTATGCAGAATATTCCTTACCAACCAGCTTGCCTTTCTGACATGGAAAAATCTCTCATGTCTGACATTGCATCAAATGCAATGGAAGAGATGATTAGGCTTTTGCAGACTAATGAGCCTCTATGGATGAAATCAAACTCTGATGGTAAAGATGTTCTTAATCTTGAAAACTATGAAAGGATGTTCCCTAAGACTAATAATCGGTTGAAGAATCCGAATATTCGCATTGAAGCTTCGAGGGATTCTCGTGTTGTTATCATGAATGGCTTAGCTTTGGTTGAAATGTTTATGGATCCAAACCAGTGGATGGCTCTCTTTCCTACTATTGTGACCATGGCAAGGACTATTGAAGTTATCTCTTCTGGAATGATGGGTGGTCCTAGTGGTTCTATGCAATTGATGTATGAAGAGTTGCAAATGCTGTCACCACTTGTTCCTATCAGAGAATTCTACTTCTTGCGTTACTGTACGCAAATTGAGCAAGGTTTATGGGCAATTGTTGATGTTTCCTATGATTTTCCTCATGACAACCAATTTGCTCCGCAATTTCGGTGCCATCGACTTCCTTCTGGTTGCTTCATTCAAGACATGCCTAATGGCTACTCCAAGGTCACTTGGATTGAACATTTGGAGATTGAAGACAAAAATCCAGTTCATAGGCTTTATAGAAATGCTATCTATAGTGGAGCTGCATTTGGAGCTGAAAGATGGCTCACTACTCTTCAAAGGATGTGTGAAAGACTTGCTTGTTCTATGGTTTCTGCCACCCGTGATCTCGGTGGAGCGATTCCATCACCTGAGGGAAAGAGCAGCATGATGAAGCTAGCACAAAGGATGGTAACTAATTTCTGTGCAAGCATAAGTGCATCAGCTAGTCATAGATGGACCACACTTTCAGCTTTGAATGAGGGAGTCAGAGTTACTGTTAGGAAAAGTACTGAGCTTGGTCAGCCTAGTGGTGTTGTGCTATGTGCAGCTACTACCATTTGGCTACCTCTCCCTCCACAAACTGTTTTCAATTTCTTCAAAGATGAAAGGAAAAGATCACAGTGGGATGTTCTTTCTAATGGAAATGCTGTTCAAGAAGTTGCTCATATTGCAAATGGTTCTCACCCTGGCAACTCCATCTCTGTGCTTAGGGCTTTCAACACAAGTCAAAACAACATGTTGATACTTCAAGAAAGCTGTGTGGATTCATCAGGTTCAATTGTAGTCTATTGTCCAATTGAATTAACATCAATGAATGTAGCAATGAGTGGTGAAGACACTTCCCACATTCCAGTAACACCTTCAGGTTTCACAATCACTTCTGATGGAAACACACTTGATAACAATAACAATCTTCAAGGAAGTGGTAATGTTAATGCTGATGGAGCATCAACAAGCTCAAACCTAGGGAACAATGGTGGAAGTGGAGGATCATTGATAACAGTTGCATTCCAAATAATGGTTAGTAGTTTACCATCTGCTAAACTTAACATGGAGTCTGTTGCAACTGTTAATGGACTTATTGGTGAGACTGTCCAACACATCAAAGCTGCTTTAAATTGCCCTAGTTCTTGA
Protein sequence

>Msa0922750

MEYHSGASGSPGDHHHHHHHEGSSDSQRRKKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMKAQHERADNCQLRQENDKIRCENIAIREALKNVICPSCGGPPINDDCFFDEQKLRIENVQLKEELDRVSSIAAKYIGRPITQLPPVAPIHISSLDLSMGNFGGHGMVGGPSLDLDLLPGSSSTMQNIPYQPACLSDMEKSLMSDIASNAMEEMIRLLQTNEPLWMKSNSDGKDVLNLENYERMFPKTNNRLKNPNIRIEASRDSRVVIMNGLALVEMFMDPNQWMALFPTIVTMARTIEVISSGMMGGPSGSMQLMYEELQMLSPLVPIREFYFLRYCTQIEQGLWAIVDVSYDFPHDNQFAPQFRCHRLPSGCFIQDMPNGYSKVTWIEHLEIEDKNPVHRLYRNAIYSGAAFGAERWLTTLQRMCERLACSMVSATRDLGGAIPSPEGKSSMMKLAQRMVTNFCASISASASHRWTTLSALNEGVRVTVRKSTELGQPSGVVLCAATTIWLPLPPQTVFNFFKDERKRSQWDVLSNGNAVQEVAHIANGSHPGNSISVLRAFNTSQNNMLILQESCVDSSGSIVVYCPIELTSMNVAMSGEDTSHIPVTPSGFTITSDGNTLDNNNNLQGSGNVNADGASTSSNLGNNGGSGGSLITVAFQIMVSSLPSAKLNMESVATVNGLIGETVQHIKAALNCPSS*