AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0896350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896350 MtrunA17_Chr6g0481041 98.077 728 12 2 1 726 1 728 0.0 1491
Msa0896350 MtrunA17_Chr8g0350321 48.452 743 344 10 2 725 88 810 0.0 681
Msa0896350 MtrunA17_Chr7g0246631 49.721 718 322 12 23 725 85 778 0.0 680
Msa0896350 MtrunA17_Chr4g0024351 47.476 733 346 14 2 726 33 734 0.0 664
Msa0896350 MtrunA17_Chr5g0410711 48.801 709 337 15 29 726 89 782 0.0 661
Msa0896350 MtrunA17_Chr2g0322731 48.214 728 337 14 2 722 72 766 0.0 655
Msa0896350 MtrunA17_Chr1g0203671 47.331 712 343 12 27 721 93 789 0.0 638
Msa0896350 MtrunA17_Chr7g0224451 64.200 500 111 6 18 509 3 442 0.0 636
Msa0896350 MtrunA17_Chr2g0331581 41.026 702 350 12 33 723 143 791 0.0 564
Msa0896350 MtrunA17_Chr6g0472471 42.458 716 362 15 33 721 73 765 0.0 535
Msa0896350 MtrunA17_Chr7g0224481 62.404 391 85 5 18 400 3 339 1.11e-162 472
Msa0896350 MtrunA17_Chr5g0394111 35.378 701 344 13 36 721 40 646 1.65e-135 414
Msa0896350 MtrunA17_Chr7g0224491 66.460 322 82 7 403 724 1 296 4.38e-135 400
Msa0896350 MtrunA17_Chr2g0292731 42.188 512 265 11 220 721 58 548 1.42e-126 387
Msa0896350 MtrunA17_Chr2g0292741 42.745 510 260 11 220 721 50 535 5.52e-126 385
Msa0896350 MtrunA17_Chr2g0292761 33.601 622 323 19 108 721 1 540 3.43e-100 318
Msa0896350 MtrunA17_Chr5g0419821 61.194 134 51 1 17 149 21 154 1.60e-51 176
Msa0896350 MtrunA17_Chr7g0224431 54.938 162 31 2 249 410 1 120 2.95e-47 163
Msa0896350 MtrunA17_Chr7g0224461 63.077 130 35 4 595 724 1 117 7.12e-37 134
Msa0896350 MtrunA17_Chr2g0319671 40.462 173 95 3 280 452 104 268 7.25e-33 129
Msa0896350 MtrunA17_Chr2g0319681 32.231 242 142 6 485 721 1 225 7.32e-32 124
Msa0896350 MtrunA17_Chr2g0319701 35.270 241 126 10 489 721 5 223 4.88e-29 116
Msa0896350 MtrunA17_Chr2g0304191 43.284 134 74 2 234 366 1 133 1.63e-28 111
Msa0896350 MtrunA17_Chr2g0319691 40.870 115 60 3 340 452 1 109 7.37e-21 89.7
Msa0896350 MtrunA17_Chr1g0205981 29.592 196 105 6 84 269 1 173 7.12e-14 71.2
Msa0896350 MtrunA17_Chr1g0163701 86.486 37 5 0 340 376 238 274 1.36e-13 73.6
Msa0896350 MtrunA17_Chr4g0028991 30.769 182 90 6 18 163 9 190 8.44e-13 72.0
Msa0896350 MtrunA17_Chr7g0265521 38.835 103 60 1 25 124 56 158 3.52e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896350 AT1G73360.1 63.624 712 228 13 25 726 28 718 0.0 889
Msa0896350 AT1G17920.2 59.147 727 240 15 12 726 5 686 0.0 838
Msa0896350 AT1G17920.1 59.147 727 240 15 12 726 5 686 0.0 838
Msa0896350 AT4G04890.2 51.836 708 304 16 26 723 57 737 0.0 699
Msa0896350 AT4G04890.1 51.836 708 304 16 26 723 57 737 0.0 699
Msa0896350 AT4G21750.2 50.419 716 316 15 29 723 62 759 0.0 686
Msa0896350 AT4G21750.1 50.419 716 316 15 29 723 62 759 0.0 686
Msa0896350 AT4G21750.3 50.419 716 316 15 29 723 62 759 0.0 686
Msa0896350 AT4G21750.4 50.419 716 316 15 29 723 62 759 0.0 686
Msa0896350 AT1G05230.3 47.665 728 323 12 10 726 39 719 0.0 672
Msa0896350 AT1G05230.8 47.534 730 323 13 10 726 39 721 0.0 667
Msa0896350 AT1G05230.4 47.534 730 323 13 10 726 39 721 0.0 667
Msa0896350 AT1G05230.9 47.534 730 323 13 10 726 39 721 0.0 667
Msa0896350 AT1G05230.10 47.534 730 323 13 10 726 39 721 0.0 667
Msa0896350 AT1G05230.7 47.534 730 323 13 10 726 39 721 0.0 667
Msa0896350 AT1G05230.11 47.534 730 323 13 10 726 39 721 0.0 667
Msa0896350 AT1G05230.2 47.534 730 323 13 10 726 39 721 0.0 667
Msa0896350 AT1G05230.6 47.534 730 323 13 10 726 39 721 0.0 667
Msa0896350 AT1G05230.5 47.534 730 323 13 10 726 39 721 0.0 667
Msa0896350 AT1G05230.1 47.534 730 323 13 10 726 39 721 0.0 667
Msa0896350 AT4G00730.1 47.139 734 340 12 2 725 107 802 0.0 641
Msa0896350 AT3G61150.1 46.732 719 344 15 28 726 109 808 0.0 633
Msa0896350 AT5G46880.3 44.626 735 344 19 20 721 102 806 0.0 572
Msa0896350 AT5G46880.1 44.626 735 344 19 20 721 102 806 0.0 572
Msa0896350 AT5G46880.2 44.626 735 344 19 20 721 102 806 0.0 572
Msa0896350 AT1G05230.12 49.556 563 254 10 29 586 64 601 0.0 549
Msa0896350 AT5G52170.3 43.040 704 308 15 33 725 61 682 0.0 538
Msa0896350 AT5G52170.1 43.040 704 308 15 33 725 61 682 0.0 538
Msa0896350 AT5G52170.2 42.716 707 311 15 33 725 61 687 0.0 535
Msa0896350 AT3G03260.1 40.921 738 367 17 9 724 7 697 7.99e-180 530
Msa0896350 AT1G79840.3 39.093 706 357 18 27 721 41 684 2.09e-172 511
Msa0896350 AT1G79840.6 39.093 706 357 18 27 721 41 684 2.09e-172 511
Msa0896350 AT1G79840.1 39.093 706 357 18 27 721 99 742 1.86e-171 510
Msa0896350 AT1G79840.2 39.093 706 357 18 27 721 128 771 1.06e-170 509
Msa0896350 AT2G32370.1 39.261 731 375 18 12 726 48 725 3.67e-164 491
Msa0896350 AT5G17320.1 40.434 737 368 18 21 723 18 717 1.70e-162 486
Msa0896350 AT4G17710.1 39.660 706 323 18 29 721 88 703 4.39e-159 477
Msa0896350 AT1G34650.1 40.247 728 377 17 21 723 13 707 1.56e-154 465
Msa0896350 AT1G79840.4 40.767 574 281 17 27 588 99 625 1.71e-143 434
Msa0896350 AT4G00730.2 48.608 467 211 9 2 461 107 551 1.85e-139 422
Msa0896350 AT3G03260.2 41.697 554 295 12 9 556 7 538 3.00e-137 415
Msa0896350 AT4G25530.1 34.807 701 393 16 29 722 40 683 9.74e-128 395
Msa0896350 AT1G79840.5 41.138 457 212 14 27 472 99 509 3.29e-105 331
Msa0896350 AT5G07260.1 24.910 554 333 19 96 641 11 489 1.14e-39 154
Msa0896350 AT5G07260.2 24.729 554 329 20 96 641 11 484 3.77e-39 152
Msa0896350 AT4G26920.1 22.876 459 254 15 201 651 54 420 3.76e-19 91.7
Msa0896350 AT5G60690.1 37.121 132 56 5 18 122 7 138 6.22e-14 76.3
Msa0896350 AT1G30490.1 34.821 112 65 2 15 118 4 115 2.20e-11 67.8
Msa0896350 AT1G52150.3 21.429 462 294 17 313 722 228 672 3.84e-11 67.0
Msa0896350 AT1G52150.1 21.429 462 294 17 313 722 228 672 6.20e-11 66.6
Msa0896350 AT1G52150.2 20.996 462 297 16 313 722 228 673 7.81e-11 66.2

Find 158 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTTGGTTGAAATGTTTA+TGG 0.134213 6_1:-86378776 Msa0896350:CDS
GTAAACTACTAACCATTATT+TGG 0.141492 6_1:+86376436 None:intergenic
GACTTATCAATGGGAAATTT+TGG 0.144806 6_1:-86379129 Msa0896350:CDS
CGCAAATTGAGCAAGGTTTA+TGG 0.148416 6_1:-86378365 Msa0896350:CDS
CTCCTAGACAGATCAAATTT+TGG 0.209657 6_1:-86380453 Msa0896350:CDS
ACTATTGAAGTTATCTCTTC+TGG 0.240170 6_1:-86378610 Msa0896350:CDS
ACCAATTTGCTCCGCAATTT+CGG 0.251046 6_1:-86378305 Msa0896350:CDS
GAGTCTGTTGCAACTGTTAA+TGG 0.255130 6_1:-86376393 Msa0896350:CDS
TTCAACCGATTATTAGTCTT+AGG 0.265573 6_1:+86378859 None:intergenic
GCAACTGTTAATGGACTTAT+TGG 0.266967 6_1:-86376384 Msa0896350:CDS
AACAGTTGCATTCCAAATAA+TGG 0.273585 6_1:-86376448 Msa0896350:CDS
TAGTGGGATGTTCTTTCTAA+TGG 0.297445 6_1:-86377242 Msa0896350:CDS
TTCATTGATGTTAATTCAAT+TGG 0.303666 6_1:+86376654 None:intergenic
GGTCACTTGGATTGAACATT+TGG 0.308899 6_1:-86378143 Msa0896350:CDS
TGCATAGTTGATGAACTTCC+AGG 0.324010 6_1:+86379060 None:intergenic
ATCTATAGTGGAGCTGCATT+TGG 0.334195 6_1:-86378076 Msa0896350:CDS
TGCAGACTAATGAGCCTCTA+TGG 0.337717 6_1:-86378942 Msa0896350:CDS
CACATTCCAGTAACACCTTC+AGG 0.343396 6_1:-86376603 Msa0896350:CDS
GCAACTCCATCTCTGTGCTT+AGG 0.352073 6_1:-86377172 Msa0896350:CDS
GATTGGTCTTCCAATGTATT+TGG 0.360707 6_1:+86379194 None:intergenic
TGAAAGACTTGCTTGTTCTA+TGG 0.364342 6_1:-86378017 Msa0896350:CDS
ATGTGAGAATATAGCTATAA+GGG 0.368026 6_1:-86379920 Msa0896350:CDS
ACCGAAATTGCGGAGCAAAT+TGG 0.378255 6_1:+86378304 None:intergenic
GTGAAACCTGAAGGTGTTAC+TGG 0.378283 6_1:+86376597 None:intergenic
GCAAATTGAGCAAGGTTTAT+GGG 0.381720 6_1:-86378364 Msa0896350:CDS
TTCATCATTGGACTTATCAA+TGG 0.382138 6_1:-86379139 Msa0896350:CDS
AAGAAATTGAAAACAGTTTG+TGG 0.386401 6_1:+86377385 None:intergenic
TGCAACCTTTGTTTCTCATC+AGG 0.387813 6_1:+86380499 None:intergenic
GAAGCTTCAATGCGAATATT+CGG 0.387981 6_1:+86378832 None:intergenic
ACCAATTCACATTTCATCAT+TGG 0.388149 6_1:-86379151 Msa0896350:CDS
TCCTAGTGGTTCTATGCAAT+TGG 0.398885 6_1:-86378575 Msa0896350:intron
GAGAATCAGAAGAACCTTCA+TGG 0.402346 6_1:+86380749 None:intergenic
GATGTGAGAATATAGCTATA+AGG 0.404730 6_1:-86379921 Msa0896350:CDS
CAACTCCATCTCTGTGCTTA+GGG 0.406270 6_1:-86377171 Msa0896350:intron
CACTTCCACCATTGTTCCCT+AGG 0.407591 6_1:+86376484 None:intergenic
TTTGGTGGGCATGGAATGGT+TGG 0.409505 6_1:-86379111 Msa0896350:CDS
ATTACCTTGGAGTAGCCATT+AGG 0.412515 6_1:+86378243 None:intergenic
TCTCGTGTTGTTATCATGAA+TGG 0.413589 6_1:-86378802 Msa0896350:CDS
TATAGAAATGCTATCTATAG+TGG 0.415183 6_1:-86378088 Msa0896350:CDS
TTCATTCAAGACATGCCTAA+TGG 0.418765 6_1:-86378258 Msa0896350:CDS
TTTCTATAAAGCCTATGAAC+TGG 0.420383 6_1:+86378103 None:intergenic
ATGCAATGGAAGAGATGATT+AGG 0.426158 6_1:-86378969 Msa0896350:CDS
CTTGCCATGGTCACAATAGT+AGG 0.426173 6_1:+86378634 None:intergenic
GGTGGGCATGGAATGGTTGG+AGG 0.429152 6_1:-86379108 Msa0896350:CDS
CTTGATCTTGATCTTCTACC+TGG 0.430302 6_1:-86379078 Msa0896350:CDS
GATAACAATAACAATCTTCA+AGG 0.430765 6_1:-86376549 Msa0896350:CDS
GTGCATCAGCTAGTCATAGA+TGG 0.431673 6_1:-86377525 Msa0896350:CDS
TTAAAGCAGCTTTGATGTGT+TGG 0.431801 6_1:+86376352 None:intergenic
CTGCTCTTTCCCTCAGGTGA+TGG 0.432769 6_1:+86377598 None:intergenic
AAGAAACAATCATCATTGAT+TGG 0.440524 6_1:+86379856 None:intergenic
GAAGTTGCTCATATTGCAAA+TGG 0.443252 6_1:-86377206 Msa0896350:CDS
AAAACAGTTTGTGGAGGGAG+AGG 0.444588 6_1:+86377394 None:intergenic
GGTTTCACAATCACTTCTGA+TGG 0.448901 6_1:-86376582 Msa0896350:CDS
AGTTATCTCTTCTGGAATGA+TGG 0.450155 6_1:-86378602 Msa0896350:CDS
ATCATGCTGCTCTTTCCCTC+AGG 0.452513 6_1:+86377592 None:intergenic
TCCAATGATGAAATGTGAAT+TGG 0.452865 6_1:+86379150 None:intergenic
TATCATGAATGGCTTAGCTT+TGG 0.453058 6_1:-86378791 Msa0896350:CDS
TCAACCGATTATTAGTCTTA+GGG 0.457224 6_1:+86378860 None:intergenic
GTTTCTGCCACCCGTGATCT+CGG 0.464633 6_1:-86377995 Msa0896350:CDS
AGGGAGTCAGAGTTACTGTT+AGG 0.465910 6_1:-86377480 Msa0896350:CDS
ACTGGTGGAAGCTGTGTGAT+TGG 0.466182 6_1:+86379177 None:intergenic
CACACTTTCAGCTTTGAATG+AGG 0.466242 6_1:-86377500 Msa0896350:CDS
AAGAAGTAGAATTCTCTGAT+AGG 0.466986 6_1:+86378399 None:intergenic
TCATCATTGGACTTATCAAT+GGG 0.471502 6_1:-86379138 Msa0896350:CDS
GAAAGGCAAGCTGGTTGGTA+AGG 0.487355 6_1:+86379030 None:intergenic
GTTAAGCAGAGAATTAGCTT+TGG 0.491594 6_1:-86380476 Msa0896350:CDS
GAAAGCTGTGTGGATTCATC+AGG 0.491631 6_1:-86376696 Msa0896350:CDS
CTAGGGAACAATGGTGGAAG+TGG 0.494985 6_1:-86376483 Msa0896350:CDS
ACCAGCTTGCCTTTCTGACA+TGG 0.500844 6_1:-86379022 Msa0896350:CDS
TATGTGCAGCTACTACCATT+TGG 0.503380 6_1:-86377420 Msa0896350:CDS
GAGTTTGATTTCATCCATAG+AGG 0.504517 6_1:+86378928 None:intergenic
GCATCAACAAGCTCAAACCT+AGG 0.505348 6_1:-86376501 Msa0896350:CDS
CTTTGTTTCTCATCAGGATG+AGG 0.506519 6_1:+86380505 None:intergenic
TCAATTTCTTCAAAGATGAA+AGG 0.508178 6_1:-86377372 Msa0896350:CDS
CTGCATTTGGAGCTGAAAGA+TGG 0.510050 6_1:-86378063 Msa0896350:CDS
GAAATGTGAATTGGTGCAAC+TGG 0.511399 6_1:+86379159 None:intergenic
AGTGGAGCAAGTGGGTCCCC+TGG 0.514639 6_1:-86380793 Msa0896350:CDS
GCCACCCGTGATCTCGGTGG+AGG 0.515311 6_1:-86377989 Msa0896350:intron
AATAACAATCTTCAAGGAAG+TGG 0.515892 6_1:-86376543 Msa0896350:CDS
TGTTCCCTAAGACTAATAAT+CGG 0.516268 6_1:-86378864 Msa0896350:CDS
AGCACAGAGATGGAGTTGCC+AGG 0.521625 6_1:+86377176 None:intergenic
TCCATGTCAGAAAGGCAAGC+TGG 0.530766 6_1:+86379021 None:intergenic
TATTCGCATTGAAGCTTCGA+GGG 0.530981 6_1:-86378827 Msa0896350:CDS
GAGCTGATAACTGTCAACTA+AGG 0.535625 6_1:-86379963 Msa0896350:CDS
GTTATCTCTTCTGGAATGAT+GGG 0.546482 6_1:-86378601 Msa0896350:CDS
GATGGCTCACTACTCTTCAA+AGG 0.546725 6_1:-86378045 Msa0896350:CDS
GAACAGAAGGACTCAGATGA+AGG 0.553957 6_1:-86380425 Msa0896350:intron
AGCATTGCTGCCAAATACAT+TGG 0.554442 6_1:-86379204 Msa0896350:CDS
GTTGTCATGAGGAAAATCAT+AGG 0.556836 6_1:+86378326 None:intergenic
CTTTCCTACTATTGTGACCA+TGG 0.557478 6_1:-86378638 Msa0896350:CDS
ACACTTTCAGCTTTGAATGA+GGG 0.558221 6_1:-86377499 Msa0896350:CDS
AATTGAAAACAGTTTGTGGA+GGG 0.561046 6_1:+86377389 None:intergenic
TACTGTACGCAAATTGAGCA+AGG 0.562069 6_1:-86378372 Msa0896350:CDS
GCACAGAGATGGAGTTGCCA+GGG 0.562213 6_1:+86377177 None:intergenic
AGTGGTAATGTTAATGCTGA+TGG 0.563501 6_1:-86376525 Msa0896350:CDS
AGATGAAAGGAAAAGATCAC+AGG 0.565819 6_1:-86377359 Msa0896350:intron
ATCTCTTCTGGAATGATGGG+TGG 0.566526 6_1:-86378598 Msa0896350:CDS
GTGATCTGCCCCTCTTGTGG+TGG 0.567379 6_1:-86379883 Msa0896350:CDS
GTATACCTCCACCGAGATCA+CGG 0.569764 6_1:+86377984 None:intergenic
ACCATCTGCTAAACTTAACA+TGG 0.570228 6_1:-86376415 Msa0896350:CDS
CATCATCATCATCACCATGA+AGG 0.573382 6_1:-86380763 Msa0896350:CDS
AGTCGATGGCACCGAAATTG+CGG 0.574598 6_1:+86378294 None:intergenic
GCACATAGCACAACACCACT+AGG 0.575221 6_1:+86377436 None:intergenic
TTAATCTTGAAAACTATGAG+AGG 0.580418 6_1:-86378888 Msa0896350:CDS
TGGATGAAATCAAACTCTGA+TGG 0.581105 6_1:-86378922 Msa0896350:CDS
TCAGCGATTCCATCACCTGA+GGG 0.581584 6_1:-86377607 Msa0896350:intron
CTACTATTGTGACCATGGCA+AGG 0.582650 6_1:-86378633 Msa0896350:CDS
AAATGTGCAACTCAAAGAAG+AGG 0.585426 6_1:-86379809 Msa0896350:intron
AACCAAAATTTGATCTGTCT+AGG 0.585787 6_1:+86380451 None:intergenic
GGGAACAATGGTGGAAGTGG+AGG 0.586180 6_1:-86376480 Msa0896350:CDS
CTGAAGGTGTTACTGGAATG+TGG 0.586831 6_1:+86376604 None:intergenic
ATTGCAAATGGTTCTCACCC+TGG 0.587680 6_1:-86377194 Msa0896350:CDS
GTTAGGAAAAGTACTGAGCT+TGG 0.589683 6_1:-86377463 Msa0896350:CDS
TCTTACCCTAAGCACAGAGA+TGG 0.590044 6_1:+86377166 None:intergenic
TAGGAAAGAGAGCCATCCAC+TGG 0.590384 6_1:+86378653 None:intergenic
TCCATGTTAAGTTTAGCAGA+TGG 0.590444 6_1:+86376414 None:intergenic
CTCATTCAAAGCTGAAAGTG+TGG 0.591958 6_1:+86377501 None:intergenic
ATATTCGCATTGAAGCTTCG+AGG 0.592812 6_1:-86378828 Msa0896350:CDS
TGGAGGGAGAGGTAGCCAAA+TGG 0.596344 6_1:+86377405 None:intergenic
AACTTCAATAGTCCTTGCCA+TGG 0.602161 6_1:+86378621 None:intergenic
TATACCTCCACCGAGATCAC+GGG 0.602328 6_1:+86377985 None:intergenic
CTCATCCTGATGAGAAACAA+AGG 0.606148 6_1:-86380504 Msa0896350:CDS
AGCTCAAACCTAGGGAACAA+TGG 0.607766 6_1:-86376492 Msa0896350:CDS
TCTTGAATGAAGCAACCAGA+AGG 0.608093 6_1:+86378270 None:intergenic
TGTCAGAAAGGCAAGCTGGT+TGG 0.608188 6_1:+86379025 None:intergenic
GATTGGAGGACCACCACAAG+AGG 0.608794 6_1:+86379873 None:intergenic
AAACAATCATCATTGATTGG+AGG 0.609512 6_1:+86379859 None:intergenic
GAGTATCATAGTGGAGCAAG+TGG 0.613997 6_1:-86380802 Msa0896350:CDS
TGACATTGCATCAAATGCAA+TGG 0.614917 6_1:-86378983 Msa0896350:CDS
ACACTGCTAATCAGATTCAA+AGG 0.615484 6_1:-86380699 Msa0896350:CDS
GATGAAGCTAGCACAAAGGA+TGG 0.618354 6_1:-86377572 Msa0896350:CDS
TTCAGCGATTCCATCACCTG+AGG 0.619756 6_1:-86377608 Msa0896350:intron
GGAATGATGGGTGGTCCTAG+TGG 0.629709 6_1:-86378589 Msa0896350:CDS
AAATTGAAAACAGTTTGTGG+AGG 0.630363 6_1:+86377388 None:intergenic
CATCAACAAGCTCAAACCTA+GGG 0.632798 6_1:-86376500 Msa0896350:CDS
AGAAGATCAAGATCAAGTGA+AGG 0.633385 6_1:+86379084 None:intergenic
AATTCTCTGATAGGAACAAG+TGG 0.634478 6_1:+86378408 None:intergenic
ATGTGAATTGGTGCAACTGG+TGG 0.640938 6_1:+86379162 None:intergenic
AATGTGATCTGCCCCTCTTG+TGG 0.645075 6_1:-86379886 Msa0896350:CDS
GGAGCAAATTGGTTGTCATG+AGG 0.645718 6_1:+86378315 None:intergenic
ATTGGAGGACCACCACAAGA+GGG 0.645788 6_1:+86379874 None:intergenic
ACTGAGCTTGGTCAGCCTAG+TGG 0.646545 6_1:-86377451 Msa0896350:CDS
ACCTCCACCGAGATCACGGG+TGG 0.647060 6_1:+86377988 None:intergenic
CATGCCTAATGGCTACTCCA+AGG 0.648553 6_1:-86378247 Msa0896350:intron
GAAGTGATTGTGAAACCTGA+AGG 0.654254 6_1:+86376588 None:intergenic
GAATCTGATTAGCAGTGTGA+CGG 0.657531 6_1:+86380704 None:intergenic
TCTGCCACCCGTGATCTCGG+TGG 0.670940 6_1:-86377992 Msa0896350:CDS
AGCAACCAGAAGGAAGTCGA+TGG 0.671022 6_1:+86378280 None:intergenic
TGAAGGTGTTACTGGAATGT+GGG 0.675743 6_1:+86376605 None:intergenic
GCATGATGAAGCTAGCACAA+AGG 0.680662 6_1:-86377576 Msa0896350:CDS
TCAAACCTAGGGAACAATGG+TGG 0.694105 6_1:-86376489 Msa0896350:CDS
TTGGAGGACCACCACAAGAG+GGG 0.698087 6_1:+86379875 None:intergenic
ACCAATTGCATAGAACCACT+AGG 0.707017 6_1:+86378574 None:intergenic
AGTATCATAGTGGAGCAAGT+GGG 0.711511 6_1:-86380801 Msa0896350:CDS
TCTGATTAGCAGTGTGACGG+TGG 0.712245 6_1:+86380707 None:intergenic
TCAATGAATGTAGCAATGAG+TGG 0.714910 6_1:-86376639 Msa0896350:CDS
GATACTTCAAGAAAGCTGTG+TGG 0.771950 6_1:-86376706 Msa0896350:CDS
ATGATGATGATGATCACCAG+GGG 0.774959 6_1:+86380777 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAATATATAAAAAAA+TGG + chr6_1:86376589-86376608 None:intergenic 0.0%
!! TTATTATTATTATAAAATTT+AGG - chr6_1:86377039-86377058 Msa0896350:intron 0.0%
!!! TAATTATGTGTTATTTTAAT+TGG - chr6_1:86377132-86377151 Msa0896350:intron 10.0%
!! TGAATAAAGTTAATAATATT+TGG + chr6_1:86377386-86377405 None:intergenic 10.0%
!! ATAAAAAATAAATAAAATGG+AGG + chr6_1:86380021-86380040 None:intergenic 10.0%
!! TGGATAAAAAATAAATAAAA+TGG + chr6_1:86380024-86380043 None:intergenic 10.0%
!! TACTGAAGAAAAAAAAAATA+GGG + chr6_1:86376615-86376634 None:intergenic 15.0%
!! ATACTGAAGAAAAAAAAAAT+AGG + chr6_1:86376616-86376635 None:intergenic 15.0%
!!! TGTGTATTTTATATTTATGT+TGG - chr6_1:86376934-86376953 Msa0896350:intron 15.0%
!!! ATTTACAATGTACTTTTATA+TGG - chr6_1:86377880-86377899 Msa0896350:intron 15.0%
!!! TTTTATATGGTCAATTTAAA+TGG - chr6_1:86377893-86377912 Msa0896350:intron 15.0%
!!! TTAATAAAGCATTAATTCAA+AGG + chr6_1:86378941-86378960 None:intergenic 15.0%
!!! TTTTTTTTGTTTTTGTTTAG+TGG - chr6_1:86379895-86379914 Msa0896350:CDS 15.0%
!!! TTTTTTTGTTTTTGTTTAGT+GGG - chr6_1:86379896-86379915 Msa0896350:CDS 15.0%
!! AAAGAAACATGAATTAATGA+AGG - chr6_1:86376797-86376816 Msa0896350:intron 20.0%
!!! CTTATTATTAGTTTTTCTCA+TGG - chr6_1:86376821-86376840 Msa0896350:intron 20.0%
!!! TCAAATTGTGTATTTTTTTC+TGG - chr6_1:86376844-86376863 Msa0896350:intron 20.0%
!!! ATAAAGTTTGTGTATTTTTC+TGG - chr6_1:86376973-86376992 Msa0896350:intron 20.0%
!! ATTATAAAATTTAGGAGAGT+TGG - chr6_1:86377047-86377066 Msa0896350:intron 20.0%
!! TTATAAAATTTAGGAGAGTT+GGG - chr6_1:86377048-86377067 Msa0896350:intron 20.0%
!!! GTTATTTTAATTGGATTTTG+TGG - chr6_1:86377141-86377160 Msa0896350:intron 20.0%
!! AAATTGAACAAAACATTTGT+AGG - chr6_1:86377546-86377565 Msa0896350:CDS 20.0%
!! AATTGAACAAAACATTTGTA+GGG - chr6_1:86377547-86377566 Msa0896350:CDS 20.0%
!!! AAAAAGATCGTGATTTTTAT+AGG - chr6_1:86377580-86377599 Msa0896350:CDS 20.0%
!! AAAATTAAAACAAGCAAACA+TGG + chr6_1:86377852-86377871 None:intergenic 20.0%
!! TGATAATCGATATACAAATT+CGG + chr6_1:86378654-86378673 None:intergenic 20.0%
!!! GTTACTCTTGTATATTTTAT+AGG - chr6_1:86378990-86379009 Msa0896350:CDS 20.0%
!!! CTTCTAAAACAGTTATATTA+TGG + chr6_1:86379344-86379363 None:intergenic 20.0%
!! ATAAAAAACATTTCATCCTA+AGG + chr6_1:86379862-86379881 None:intergenic 20.0%
!! ATTAGAATCGAAATTAAATC+CGG + chr6_1:86380370-86380389 None:intergenic 20.0%
!!! TGTGAATTTTCAAATGTAAT+AGG - chr6_1:86380397-86380416 Msa0896350:intron 20.0%
!! TTCATTGATGTTAATTCAAT+TGG + chr6_1:86380503-86380522 None:intergenic 20.0%
!!! TTTTTTCTTCAGTATGTTCA+AGG - chr6_1:86376621-86376640 Msa0896350:CDS 25.0%
!! TTAATTGGATTTTGTGGTTT+TGG - chr6_1:86377147-86377166 Msa0896350:intron 25.0%
! ATGTGAGAATATAGCTATAA+GGG - chr6_1:86377234-86377253 Msa0896350:CDS 25.0%
! AAGAAACAATCATCATTGAT+TGG + chr6_1:86377301-86377320 None:intergenic 25.0%
!!! CTACAATTTTAGTCTCTATA+AGG - chr6_1:86377519-86377538 Msa0896350:CDS 25.0%
!!! TATAAAGGATTTTAAGGTCT+CGG + chr6_1:86377791-86377810 None:intergenic 25.0%
!! CAGCAATATAAAGGATTTTA+AGG + chr6_1:86377797-86377816 None:intergenic 25.0%
! TTAATCTTGAAAACTATGAG+AGG - chr6_1:86378266-86378285 Msa0896350:CDS 25.0%
! ATTCAAAGGTTATATTACCT+TGG + chr6_1:86378927-86378946 None:intergenic 25.0%
!! TGTATATTTTATAGGTCACT+TGG - chr6_1:86378998-86379017 Msa0896350:CDS 25.0%
! TATAGAAATGCTATCTATAG+TGG - chr6_1:86379066-86379085 Msa0896350:CDS 25.0%
! AAGAAATTGAAAACAGTTTG+TGG + chr6_1:86379772-86379791 None:intergenic 25.0%
! TCAATTTCTTCAAAGATGAA+AGG - chr6_1:86379782-86379801 Msa0896350:intron 25.0%
!!! TTATCCACTTTGTTTTCAAT+CGG - chr6_1:86380037-86380056 Msa0896350:intron 25.0%
! GATAACAATAACAATCTTCA+AGG - chr6_1:86380605-86380624 Msa0896350:intron 25.0%
! GTAAACTACTAACCATTATT+TGG + chr6_1:86380721-86380740 None:intergenic 25.0%
! TCAAAAATGGAGTATCATAG+TGG - chr6_1:86376343-86376362 Msa0896350:CDS 30.0%
AACCAAAATTTGATCTGTCT+AGG + chr6_1:86376706-86376725 None:intergenic 30.0%
!!! AATTTTGGTTTCAGAACAGA+AGG - chr6_1:86376716-86376735 Msa0896350:CDS 30.0%
!!! TTTTGTGGTTTTGGTTAAAC+AGG - chr6_1:86377156-86377175 Msa0896350:intron 30.0%
GATGTGAGAATATAGCTATA+AGG - chr6_1:86377233-86377252 Msa0896350:CDS 30.0%
! AAACAATCATCATTGATTGG+AGG + chr6_1:86377298-86377317 None:intergenic 30.0%
CAATTGCAACCAAAACATAA+AGG + chr6_1:86377716-86377735 None:intergenic 30.0%
! CAAATTTTACGTAGCTAATG+TGG - chr6_1:86377747-86377766 Msa0896350:intron 30.0%
CAATTACAGCAGCAATATAA+AGG + chr6_1:86377806-86377825 None:intergenic 30.0%
ACCAATTCACATTTCATCAT+TGG - chr6_1:86378003-86378022 Msa0896350:CDS 30.0%
TCCAATGATGAAATGTGAAT+TGG + chr6_1:86378007-86378026 None:intergenic 30.0%
TTCATCATTGGACTTATCAA+TGG - chr6_1:86378015-86378034 Msa0896350:CDS 30.0%
TCATCATTGGACTTATCAAT+GGG - chr6_1:86378016-86378035 Msa0896350:CDS 30.0%
! GACTTATCAATGGGAAATTT+TGG - chr6_1:86378025-86378044 Msa0896350:CDS 30.0%
! TTATCAATGGGAAATTTTGG+TGG - chr6_1:86378028-86378047 Msa0896350:CDS 30.0%
!! TATCAATGGGAAATTTTGGT+GGG - chr6_1:86378029-86378048 Msa0896350:CDS 30.0%
TGTTCCCTAAGACTAATAAT+CGG - chr6_1:86378290-86378309 Msa0896350:CDS 30.0%
!! TCAACCGATTATTAGTCTTA+GGG + chr6_1:86378297-86378316 None:intergenic 30.0%
!! TTCAACCGATTATTAGTCTT+AGG + chr6_1:86378298-86378317 None:intergenic 30.0%
! AGCTTTGGTTGAAATGTTTA+TGG - chr6_1:86378378-86378397 Msa0896350:CDS 30.0%
GAACATGAATAAGTACTTAC+TGG + chr6_1:86378406-86378425 None:intergenic 30.0%
ACTATTGAAGTTATCTCTTC+TGG - chr6_1:86378544-86378563 Msa0896350:intron 30.0%
AAGAAGTAGAATTCTCTGAT+AGG + chr6_1:86378758-86378777 None:intergenic 30.0%
AAGACAAAAATCCAGTTCAT+AGG - chr6_1:86379040-86379059 Msa0896350:CDS 30.0%
TTTCTATAAAGCCTATGAAC+TGG + chr6_1:86379054-86379073 None:intergenic 30.0%
!! TCTCTAAAACTGTTGTATTG+TGG + chr6_1:86379301-86379320 None:intergenic 30.0%
!!! TACAACAGTTTTAGAGACAT+CGG - chr6_1:86379304-86379323 Msa0896350:intron 30.0%
! TTTGTTTGCATTTTACTGCA+AGG - chr6_1:86379399-86379418 Msa0896350:intron 30.0%
CACATTGATACATATGCATA+TGG + chr6_1:86379456-86379475 None:intergenic 30.0%
AATTGAAAACAGTTTGTGGA+GGG + chr6_1:86379768-86379787 None:intergenic 30.0%
AAATTGAAAACAGTTTGTGG+AGG + chr6_1:86379769-86379788 None:intergenic 30.0%
TGATTTGATTCTATGACCTT+AGG - chr6_1:86379843-86379862 Msa0896350:CDS 30.0%
ACACGTTGCAACTAAAAAAT+GGG + chr6_1:86380290-86380309 None:intergenic 30.0%
AACACGTTGCAACTAAAAAA+TGG + chr6_1:86380291-86380310 None:intergenic 30.0%
AATAACAATCTTCAAGGAAG+TGG - chr6_1:86380611-86380630 Msa0896350:intron 30.0%
AACAGTTGCATTCCAAATAA+TGG - chr6_1:86380706-86380725 Msa0896350:CDS 30.0%
ACACTGCTAATCAGATTCAA+AGG - chr6_1:86376455-86376474 Msa0896350:CDS 35.0%
! GTTAAGCAGAGAATTAGCTT+TGG - chr6_1:86376678-86376697 Msa0896350:CDS 35.0%
! CTCCTAGACAGATCAAATTT+TGG - chr6_1:86376701-86376720 Msa0896350:CDS 35.0%
! CAAATAAAGCTTTGACCATG+AGG + chr6_1:86377083-86377102 None:intergenic 35.0%
AAATGTGCAACTCAAAGAAG+AGG - chr6_1:86377345-86377364 Msa0896350:intron 35.0%
!!! TGCCGTAAACCTTTATTTTG+CGG - chr6_1:86377647-86377666 Msa0896350:intron 35.0%
TGCCGCAAAATAAAGGTTTA+CGG + chr6_1:86377652-86377671 None:intergenic 35.0%
! GACATTTTGCCGCAAAATAA+AGG + chr6_1:86377659-86377678 None:intergenic 35.0%
CCAAAACATAAAGGACTTTG+AGG + chr6_1:86377707-86377726 None:intergenic 35.0%
! CCTCAAAGTCCTTTATGTTT+TGG - chr6_1:86377704-86377723 Msa0896350:intron 35.0%
!! GATTGGTCTTCCAATGTATT+TGG + chr6_1:86377963-86377982 None:intergenic 35.0%
AGAAGATCAAGATCAAGTGA+AGG + chr6_1:86378073-86378092 None:intergenic 35.0%
! GAGATTTTTCCATGTCAGAA+AGG + chr6_1:86378144-86378163 None:intergenic 35.0%
TGACATTGCATCAAATGCAA+TGG - chr6_1:86378171-86378190 Msa0896350:intron 35.0%
ATGCAATGGAAGAGATGATT+AGG - chr6_1:86378185-86378204 Msa0896350:intron 35.0%
! GAGTTTGATTTCATCCATAG+AGG + chr6_1:86378229-86378248 None:intergenic 35.0%
TGGATGAAATCAAACTCTGA+TGG - chr6_1:86378232-86378251 Msa0896350:intron 35.0%
GAAGCTTCAATGCGAATATT+CGG + chr6_1:86378325-86378344 None:intergenic 35.0%
! TCTCGTGTTGTTATCATGAA+TGG - chr6_1:86378352-86378371 Msa0896350:CDS 35.0%
TATCATGAATGGCTTAGCTT+TGG - chr6_1:86378363-86378382 Msa0896350:CDS 35.0%
!! GATTGATTTTTCAGAACCAG+TGG - chr6_1:86378485-86378504 Msa0896350:intron 35.0%
!! AGTTATCTCTTCTGGAATGA+TGG - chr6_1:86378552-86378571 Msa0896350:intron 35.0%
!! GTTATCTCTTCTGGAATGAT+GGG - chr6_1:86378553-86378572 Msa0896350:intron 35.0%
AATTCTCTGATAGGAACAAG+TGG + chr6_1:86378749-86378768 None:intergenic 35.0%
GCAAATTGAGCAAGGTTTAT+GGG - chr6_1:86378790-86378809 Msa0896350:CDS 35.0%
GTTGTCATGAGGAAAATCAT+AGG + chr6_1:86378831-86378850 None:intergenic 35.0%
TTCATTCAAGACATGCCTAA+TGG - chr6_1:86378896-86378915 Msa0896350:CDS 35.0%
! TGAAAGACTTGCTTGTTCTA+TGG - chr6_1:86379137-86379156 Msa0896350:CDS 35.0%
GCAATTTGCAATCATGATTG+CGG - chr6_1:86379275-86379294 Msa0896350:intron 35.0%
!! TGGTTCTAAATAACAGATGC+AGG + chr6_1:86379436-86379455 None:intergenic 35.0%
!! ACACTTTCAGCTTTGAATGA+GGG - chr6_1:86379655-86379674 Msa0896350:intron 35.0%
AGATGAAAGGAAAAGATCAC+AGG - chr6_1:86379795-86379814 Msa0896350:intron 35.0%
TAGTGGGATGTTCTTTCTAA+TGG - chr6_1:86379912-86379931 Msa0896350:CDS 35.0%
GAAGTTGCTCATATTGCAAA+TGG - chr6_1:86379948-86379967 Msa0896350:CDS 35.0%
AAATTAAATCCGGCGAACTA+GGG + chr6_1:86380360-86380379 None:intergenic 35.0%
TCAATGAATGTAGCAATGAG+TGG - chr6_1:86380515-86380534 Msa0896350:CDS 35.0%
! AGTGGTAATGTTAATGCTGA+TGG - chr6_1:86380629-86380648 Msa0896350:intron 35.0%
ACCATCTGCTAAACTTAACA+TGG - chr6_1:86380739-86380758 Msa0896350:CDS 35.0%
TCCATGTTAAGTTTAGCAGA+TGG + chr6_1:86380743-86380762 None:intergenic 35.0%
!! GCAACTGTTAATGGACTTAT+TGG - chr6_1:86380770-86380789 Msa0896350:CDS 35.0%
! TTAAAGCAGCTTTGATGTGT+TGG + chr6_1:86380805-86380824 None:intergenic 35.0%
! AGTATCATAGTGGAGCAAGT+GGG - chr6_1:86376353-86376372 Msa0896350:CDS 40.0%
! ATGATGATGATGATCACCAG+GGG + chr6_1:86376380-86376399 None:intergenic 40.0%
! GATGATGATGATGATCACCA+GGG + chr6_1:86376381-86376400 None:intergenic 40.0%
! TGATGATGATGATGATCACC+AGG + chr6_1:86376382-86376401 None:intergenic 40.0%
CATCATCATCATCACCATGA+AGG - chr6_1:86376391-86376410 Msa0896350:CDS 40.0%
GAGAATCAGAAGAACCTTCA+TGG + chr6_1:86376408-86376427 None:intergenic 40.0%
GAATCTGATTAGCAGTGTGA+CGG + chr6_1:86376453-86376472 None:intergenic 40.0%
! CTTTGTTTCTCATCAGGATG+AGG + chr6_1:86376652-86376671 None:intergenic 40.0%
CTCATCCTGATGAGAAACAA+AGG - chr6_1:86376650-86376669 Msa0896350:CDS 40.0%
! TGCAACCTTTGTTTCTCATC+AGG + chr6_1:86376658-86376677 None:intergenic 40.0%
GAGCTGATAACTGTCAACTA+AGG - chr6_1:86377191-86377210 Msa0896350:CDS 40.0%
! GGGGCAGATCACATTTTTAA+GGG + chr6_1:86377263-86377282 None:intergenic 40.0%
! AGGGGCAGATCACATTTTTA+AGG + chr6_1:86377264-86377283 None:intergenic 40.0%
AGCATTGCTGCCAAATACAT+TGG - chr6_1:86377950-86377969 Msa0896350:intron 40.0%
GAAATGTGAATTGGTGCAAC+TGG + chr6_1:86377998-86378017 None:intergenic 40.0%
!! AAATTTTGGTGGGCATGGAA+TGG - chr6_1:86378039-86378058 Msa0896350:CDS 40.0%
CTTGATCTTGATCTTCTACC+TGG - chr6_1:86378076-86378095 Msa0896350:CDS 40.0%
!! TGCATAGTTGATGAACTTCC+AGG + chr6_1:86378097-86378116 None:intergenic 40.0%
ATATTCGCATTGAAGCTTCG+AGG - chr6_1:86378326-86378345 Msa0896350:CDS 40.0%
TATTCGCATTGAAGCTTCGA+GGG - chr6_1:86378327-86378346 Msa0896350:CDS 40.0%
!! GATTTTTCAGAACCAGTGGA+TGG - chr6_1:86378489-86378508 Msa0896350:intron 40.0%
CTTTCCTACTATTGTGACCA+TGG - chr6_1:86378516-86378535 Msa0896350:intron 40.0%
AACTTCAATAGTCCTTGCCA+TGG + chr6_1:86378536-86378555 None:intergenic 40.0%
! TCCTAGTGGTTCTATGCAAT+TGG - chr6_1:86378579-86378598 Msa0896350:CDS 40.0%
ACCAATTGCATAGAACCACT+AGG + chr6_1:86378583-86378602 None:intergenic 40.0%
TACTGTACGCAAATTGAGCA+AGG - chr6_1:86378782-86378801 Msa0896350:CDS 40.0%
CGCAAATTGAGCAAGGTTTA+TGG - chr6_1:86378789-86378808 Msa0896350:CDS 40.0%
! ACCAATTTGCTCCGCAATTT+CGG - chr6_1:86378849-86378868 Msa0896350:CDS 40.0%
TCTTGAATGAAGCAACCAGA+AGG + chr6_1:86378887-86378906 None:intergenic 40.0%
ATTACCTTGGAGTAGCCATT+AGG + chr6_1:86378914-86378933 None:intergenic 40.0%
GGTCACTTGGATTGAACATT+TGG - chr6_1:86379011-86379030 Msa0896350:CDS 40.0%
! ATCTATAGTGGAGCTGCATT+TGG - chr6_1:86379078-86379097 Msa0896350:CDS 40.0%
CGCTTGTGATCTAAAAGTCA+TGG - chr6_1:86379511-86379530 Msa0896350:intron 40.0%
CTCATTCAAAGCTGAAAGTG+TGG + chr6_1:86379656-86379675 None:intergenic 40.0%
!! CACACTTTCAGCTTTGAATG+AGG - chr6_1:86379654-86379673 Msa0896350:intron 40.0%
!! GTTAGGAAAAGTACTGAGCT+TGG - chr6_1:86379691-86379710 Msa0896350:intron 40.0%
TATGTGCAGCTACTACCATT+TGG - chr6_1:86379734-86379753 Msa0896350:intron 40.0%
! CTCACCGATTGAAAACAAAG+TGG + chr6_1:86380044-86380063 None:intergenic 40.0%
!!! CTTTGTTTTCAATCGGTGAG+AGG - chr6_1:86380044-86380063 Msa0896350:intron 40.0%
GCAATGTTATAATTGTGCCG+AGG + chr6_1:86380075-86380094 None:intergenic 40.0%
AATTTGAACACGTGACCTCA+GGG + chr6_1:86380108-86380127 None:intergenic 40.0%
GAAATTAAATCCGGCGAACT+AGG + chr6_1:86380361-86380380 None:intergenic 40.0%
GATACTTCAAGAAAGCTGTG+TGG - chr6_1:86380448-86380467 Msa0896350:CDS 40.0%
!! TGAAGGTGTTACTGGAATGT+GGG + chr6_1:86380552-86380571 None:intergenic 40.0%
GAAGTGATTGTGAAACCTGA+AGG + chr6_1:86380569-86380588 None:intergenic 40.0%
GGTTTCACAATCACTTCTGA+TGG - chr6_1:86380572-86380591 Msa0896350:intron 40.0%
CATCAACAAGCTCAAACCTA+GGG - chr6_1:86380654-86380673 Msa0896350:intron 40.0%
GAGTCTGTTGCAACTGTTAA+TGG - chr6_1:86380761-86380780 Msa0896350:CDS 40.0%
! GAGTATCATAGTGGAGCAAG+TGG - chr6_1:86376352-86376371 Msa0896350:CDS 45.0%
GAACAGAAGGACTCAGATGA+AGG - chr6_1:86376729-86376748 Msa0896350:CDS 45.0%
TGCTGCTGTAATTGCGATTG+TGG - chr6_1:86377812-86377831 Msa0896350:intron 45.0%
ATGTGAATTGGTGCAACTGG+TGG + chr6_1:86377995-86378014 None:intergenic 45.0%
!! ATGGGAAATTTTGGTGGGCA+TGG - chr6_1:86378034-86378053 Msa0896350:CDS 45.0%
TGCAGACTAATGAGCCTCTA+TGG - chr6_1:86378212-86378231 Msa0896350:intron 45.0%
CTTGCCATGGTCACAATAGT+AGG + chr6_1:86378523-86378542 None:intergenic 45.0%
CTACTATTGTGACCATGGCA+AGG - chr6_1:86378521-86378540 Msa0896350:intron 45.0%
!! ATCTCTTCTGGAATGATGGG+TGG - chr6_1:86378556-86378575 Msa0896350:intron 45.0%
GGAGCAAATTGGTTGTCATG+AGG + chr6_1:86378842-86378861 None:intergenic 45.0%
ACCGAAATTGCGGAGCAAAT+TGG + chr6_1:86378853-86378872 None:intergenic 45.0%
! CTGCATTTGGAGCTGAAAGA+TGG - chr6_1:86379091-86379110 Msa0896350:CDS 45.0%
GATGGCTCACTACTCTTCAA+AGG - chr6_1:86379109-86379128 Msa0896350:CDS 45.0%
AGACATCGGCAACATGATTG+TGG - chr6_1:86379318-86379337 Msa0896350:intron 45.0%
AACTGCAATCGTGGTTGCAT+CGG - chr6_1:86379371-86379390 Msa0896350:intron 45.0%
GCATGATGAAGCTAGCACAA+AGG - chr6_1:86379578-86379597 Msa0896350:intron 45.0%
GATGAAGCTAGCACAAAGGA+TGG - chr6_1:86379582-86379601 Msa0896350:intron 45.0%
GTGCATCAGCTAGTCATAGA+TGG - chr6_1:86379629-86379648 Msa0896350:intron 45.0%
AGGGAGTCAGAGTTACTGTT+AGG - chr6_1:86379674-86379693 Msa0896350:intron 45.0%
AAAACAGTTTGTGGAGGGAG+AGG + chr6_1:86379763-86379782 None:intergenic 45.0%
ATTGCAAATGGTTCTCACCC+TGG - chr6_1:86379960-86379979 Msa0896350:CDS 45.0%
CAACTCCATCTCTGTGCTTA+GGG - chr6_1:86379983-86380002 Msa0896350:intron 45.0%
TCTTACCCTAAGCACAGAGA+TGG + chr6_1:86379991-86380010 None:intergenic 45.0%
GAATTTGAACACGTGACCTC+AGG + chr6_1:86380109-86380128 None:intergenic 45.0%
GAGGTCACGTGTTCAAATTC+TGG - chr6_1:86380109-86380128 Msa0896350:intron 45.0%
TCAAGCGGCAAACATGTACT+CGG + chr6_1:86380164-86380183 None:intergenic 45.0%
! CTAGAGGAGAGACTGTTTTC+AGG + chr6_1:86380209-86380228 None:intergenic 45.0%
AAAACAGTCTCTCCTCTAGC+AGG - chr6_1:86380210-86380229 Msa0896350:intron 45.0%
! ATAAGGAGGGCACATGTACT+CGG + chr6_1:86380243-86380262 None:intergenic 45.0%
AACGCTCACACGTATAAGGA+GGG + chr6_1:86380256-86380275 None:intergenic 45.0%
CATGAACGCTCACACGTATA+AGG + chr6_1:86380260-86380279 None:intergenic 45.0%
!! TTTTAGTTGCCCTAGTTCGC+CGG - chr6_1:86380348-86380367 Msa0896350:intron 45.0%
GAAAGCTGTGTGGATTCATC+AGG - chr6_1:86380458-86380477 Msa0896350:CDS 45.0%
!! CTGAAGGTGTTACTGGAATG+TGG + chr6_1:86380553-86380572 None:intergenic 45.0%
CACATTCCAGTAACACCTTC+AGG - chr6_1:86380551-86380570 Msa0896350:intron 45.0%
!! GTGAAACCTGAAGGTGTTAC+TGG + chr6_1:86380560-86380579 None:intergenic 45.0%
GCATCAACAAGCTCAAACCT+AGG - chr6_1:86380653-86380672 Msa0896350:intron 45.0%
AGCTCAAACCTAGGGAACAA+TGG - chr6_1:86380662-86380681 Msa0896350:intron 45.0%
TCAAACCTAGGGAACAATGG+TGG - chr6_1:86380665-86380684 Msa0896350:intron 45.0%
!!! TATTTTTTTATATTATTTTC+TGG - chr6_1:86376891-86376910 Msa0896350:intron 5.0%
!!! TTAAAAAATTGTAATTTTAT+AGG + chr6_1:86377476-86377495 None:intergenic 5.0%
!! AATTAAAAATATATTTAACT+CGG - chr6_1:86377603-86377622 Msa0896350:CDS 5.0%
TCTGATTAGCAGTGTGACGG+TGG + chr6_1:86376450-86376469 None:intergenic 50.0%
GCTTTGACCATGAGGAGACT+AGG + chr6_1:86377075-86377094 None:intergenic 50.0%
AATGTGATCTGCCCCTCTTG+TGG - chr6_1:86377268-86377287 Msa0896350:intron 50.0%
ATTGGAGGACCACCACAAGA+GGG + chr6_1:86377283-86377302 None:intergenic 50.0%
! GCGGCAAAATGTCGTTGACT+CGG - chr6_1:86377666-86377685 Msa0896350:intron 50.0%
ACTGGTGGAAGCTGTGTGAT+TGG + chr6_1:86377980-86377999 None:intergenic 50.0%
! TTTGGTGGGCATGGAATGGT+TGG - chr6_1:86378043-86378062 Msa0896350:CDS 50.0%
! GAAAGGCAAGCTGGTTGGTA+AGG + chr6_1:86378127-86378146 None:intergenic 50.0%
TGTCAGAAAGGCAAGCTGGT+TGG + chr6_1:86378132-86378151 None:intergenic 50.0%
ACCAGCTTGCCTTTCTGACA+TGG - chr6_1:86378132-86378151 Msa0896350:CDS 50.0%
TCCATGTCAGAAAGGCAAGC+TGG + chr6_1:86378136-86378155 None:intergenic 50.0%
TAGGAAAGAGAGCCATCCAC+TGG + chr6_1:86378504-86378523 None:intergenic 50.0%
! AGTCGATGGCACCGAAATTG+CGG + chr6_1:86378863-86378882 None:intergenic 50.0%
AGCAACCAGAAGGAAGTCGA+TGG + chr6_1:86378877-86378896 None:intergenic 50.0%
CATGCCTAATGGCTACTCCA+AGG - chr6_1:86378907-86378926 Msa0896350:CDS 50.0%
TATACCTCCACCGAGATCAC+GGG + chr6_1:86379172-86379191 None:intergenic 50.0%
GTATACCTCCACCGAGATCA+CGG + chr6_1:86379173-86379192 None:intergenic 50.0%
AGTCCAAGCAACTGCAATCG+TGG - chr6_1:86379362-86379381 Msa0896350:intron 50.0%
CAACCACGATTGCAGTTGCT+TGG + chr6_1:86379368-86379387 None:intergenic 50.0%
TTCAGCGATTCCATCACCTG+AGG - chr6_1:86379546-86379565 Msa0896350:intron 50.0%
TCAGCGATTCCATCACCTGA+GGG - chr6_1:86379547-86379566 Msa0896350:intron 50.0%
ATCATGCTGCTCTTTCCCTC+AGG + chr6_1:86379565-86379584 None:intergenic 50.0%
GCACATAGCACAACACCACT+AGG + chr6_1:86379721-86379740 None:intergenic 50.0%
GCAACTCCATCTCTGTGCTT+AGG - chr6_1:86379982-86380001 Msa0896350:intron 50.0%
ATCGGTGAGAGGATGATCCT+CGG - chr6_1:86380055-86380074 Msa0896350:intron 50.0%
GAAACAGTCTCTCCTCTAGC+AGG - chr6_1:86380131-86380150 Msa0896350:intron 50.0%
! ATGTTTGCCGCTTGACACAG+TGG - chr6_1:86380169-86380188 Msa0896350:intron 50.0%
GAACGCTCACACGTATAAGG+AGG + chr6_1:86380257-86380276 None:intergenic 50.0%
CGTGTGAGCGTTCATGTACT+CGG - chr6_1:86380264-86380283 Msa0896350:intron 50.0%
CACTTCCACCATTGTTCCCT+AGG + chr6_1:86380673-86380692 None:intergenic 50.0%
! CTAGGGAACAATGGTGGAAG+TGG - chr6_1:86380671-86380690 Msa0896350:intron 50.0%
GTTGGGTCCTAGTCTCCTCA+TGG - chr6_1:86377065-86377084 Msa0896350:intron 55.0%
TTGGAGGACCACCACAAGAG+GGG + chr6_1:86377282-86377301 None:intergenic 55.0%
GATTGGAGGACCACCACAAG+AGG + chr6_1:86377284-86377303 None:intergenic 55.0%
!! GGAATGATGGGTGGTCCTAG+TGG - chr6_1:86378565-86378584 Msa0896350:intron 55.0%
GTTTCTGCCACCCGTGATCT+CGG - chr6_1:86379159-86379178 Msa0896350:CDS 55.0%
CTGCTCTTTCCCTCAGGTGA+TGG + chr6_1:86379559-86379578 None:intergenic 55.0%
ACTGAGCTTGGTCAGCCTAG+TGG - chr6_1:86379703-86379722 Msa0896350:intron 55.0%
TGGAGGGAGAGGTAGCCAAA+TGG + chr6_1:86379752-86379771 None:intergenic 55.0%
GCACAGAGATGGAGTTGCCA+GGG + chr6_1:86379980-86379999 None:intergenic 55.0%
AGCACAGAGATGGAGTTGCC+AGG + chr6_1:86379981-86380000 None:intergenic 55.0%
CTCGGTCTTACTCCTGCTAG+AGG + chr6_1:86380146-86380165 None:intergenic 55.0%
CTCGTGACCACTGTGTCAAG+CGG + chr6_1:86380179-86380198 None:intergenic 55.0%
CTCGGTCTTTCTCCTGCTAG+AGG + chr6_1:86380225-86380244 None:intergenic 55.0%
! GGGAACAATGGTGGAAGTGG+AGG - chr6_1:86380674-86380693 Msa0896350:intron 55.0%
GTGATCTGCCCCTCTTGTGG+TGG - chr6_1:86377271-86377290 Msa0896350:intron 60.0%
GGTGGGCATGGAATGGTTGG+AGG - chr6_1:86378046-86378065 Msa0896350:CDS 60.0%
!! CGGTGCCATCGACTTCCTTC+TGG - chr6_1:86378869-86378888 Msa0896350:CDS 60.0%
ATTGCCGCCTTGTGACCCTG+AGG - chr6_1:86380090-86380109 Msa0896350:intron 60.0%
GTGACCTCAGGGTCACAAGG+CGG + chr6_1:86380097-86380116 None:intergenic 60.0%
CACGTGACCTCAGGGTCACA+AGG + chr6_1:86380100-86380119 None:intergenic 60.0%
AGTGGAGCAAGTGGGTCCCC+TGG - chr6_1:86376361-86376380 Msa0896350:CDS 65.0%
TCTGCCACCCGTGATCTCGG+TGG - chr6_1:86379162-86379181 Msa0896350:CDS 65.0%
ACCTCCACCGAGATCACGGG+TGG + chr6_1:86379169-86379188 None:intergenic 65.0%
GCCACCCGTGATCTCGGTGG+AGG - chr6_1:86379165-86379184 Msa0896350:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 86376335 86380841 86376335 ID=Msa0896350;Name=Msa0896350
chr6_1 mRNA 86376335 86380841 86376335 ID=Msa0896350-mRNA-1;Parent=Msa0896350;Name=Msa0896350-mRNA-1;_AED=0.09;_eAED=0.09;_QI=14|1|0.8|1|1|1|10|0|726
chr6_1 exon 86376335 86376757 86376335 ID=Msa0896350-mRNA-1:exon:14581;Parent=Msa0896350-mRNA-1
chr6_1 exon 86377172 86377261 86377172 ID=Msa0896350-mRNA-1:exon:14580;Parent=Msa0896350-mRNA-1
chr6_1 exon 86377360 86377625 86377360 ID=Msa0896350-mRNA-1:exon:14579;Parent=Msa0896350-mRNA-1
chr6_1 exon 86377990 86378164 86377990 ID=Msa0896350-mRNA-1:exon:14578;Parent=Msa0896350-mRNA-1
chr6_1 exon 86378248 86378457 86378248 ID=Msa0896350-mRNA-1:exon:14577;Parent=Msa0896350-mRNA-1
chr6_1 exon 86378576 86378677 86378576 ID=Msa0896350-mRNA-1:exon:14576;Parent=Msa0896350-mRNA-1
chr6_1 exon 86378771 86379241 86378771 ID=Msa0896350-mRNA-1:exon:14575;Parent=Msa0896350-mRNA-1
chr6_1 exon 86379810 86379998 86379810 ID=Msa0896350-mRNA-1:exon:14574;Parent=Msa0896350-mRNA-1
chr6_1 exon 86380426 86380543 86380426 ID=Msa0896350-mRNA-1:exon:14573;Parent=Msa0896350-mRNA-1
chr6_1 exon 86380691 86380841 86380691 ID=Msa0896350-mRNA-1:exon:14572;Parent=Msa0896350-mRNA-1
chr6_1 five_prime_UTR 86380828 86380841 86380828 ID=Msa0896350-mRNA-1:five_prime_utr;Parent=Msa0896350-mRNA-1
chr6_1 CDS 86380691 86380827 86380691 ID=Msa0896350-mRNA-1:cds;Parent=Msa0896350-mRNA-1
chr6_1 CDS 86380426 86380543 86380426 ID=Msa0896350-mRNA-1:cds;Parent=Msa0896350-mRNA-1
chr6_1 CDS 86379810 86379998 86379810 ID=Msa0896350-mRNA-1:cds;Parent=Msa0896350-mRNA-1
chr6_1 CDS 86378771 86379241 86378771 ID=Msa0896350-mRNA-1:cds;Parent=Msa0896350-mRNA-1
chr6_1 CDS 86378576 86378677 86378576 ID=Msa0896350-mRNA-1:cds;Parent=Msa0896350-mRNA-1
chr6_1 CDS 86378248 86378457 86378248 ID=Msa0896350-mRNA-1:cds;Parent=Msa0896350-mRNA-1
chr6_1 CDS 86377990 86378164 86377990 ID=Msa0896350-mRNA-1:cds;Parent=Msa0896350-mRNA-1
chr6_1 CDS 86377360 86377625 86377360 ID=Msa0896350-mRNA-1:cds;Parent=Msa0896350-mRNA-1
chr6_1 CDS 86377172 86377261 86377172 ID=Msa0896350-mRNA-1:cds;Parent=Msa0896350-mRNA-1
chr6_1 CDS 86376335 86376757 86376335 ID=Msa0896350-mRNA-1:cds;Parent=Msa0896350-mRNA-1
Gene Sequence

>Msa0896350

ATGGAGTATCATAGTGGAGCAAGTGGGTCCCCTGGTGATCATCATCATCATCATCACCATGAAGGTTCTTCTGATTCTCAGAGAAGAAAGAAACGTTACCACCGTCACACTGCTAATCAGATTCAAAGGCTTGAAGCTATGTTCAAGGAGTGTCCTCATCCTGATGAGAAACAAAGGTTGCAGTTAAGCAGAGAATTAGCTTTGGCTCCTAGACAGATCAAATTTTGGTTTCAGAACAGAAGGACTCAGATGAAGGCACAGCATGAAAGAGCTGATAACTGTCAACTAAGGCAAGAGAATGATAAAATAAGATGTGAGAATATAGCTATAAGGGAAGCCCTTAAAAATGTGATCTGCCCCTCTTGTGGTGGTCCTCCAATCAATGATGATTGTTTCTTTGATGAACAAAAGCTGAGAATTGAAAATGTGCAACTCAAAGAAGAGCTTGATAGAGTATCAAGCATTGCTGCCAAATACATTGGAAGACCAATCACACAGCTTCCACCAGTTGCACCAATTCACATTTCATCATTGGACTTATCAATGGGAAATTTTGGTGGGCATGGAATGGTTGGAGGACCTTCACTTGATCTTGATCTTCTACCTGGAAGTTCATCAACTATGCAGAATATTCCTTACCAACCAGCTTGCCTTTCTGACATGGAAAAATCTCTCATGTCTGACATTGCATCAAATGCAATGGAAGAGATGATTAGGCTTTTGCAGACTAATGAGCCTCTATGGATGAAATCAAACTCTGATGGTAAAGATGTTCTTAATCTTGAAAACTATGAGAGGATGTTCCCTAAGACTAATAATCGGTTGAAGAATCCGAATATTCGCATTGAAGCTTCGAGGGATTCTCGTGTTGTTATCATGAATGGCTTAGCTTTGGTTGAAATGTTTATGGATCCAAACCAGTGGATGGCTCTCTTTCCTACTATTGTGACCATGGCAAGGACTATTGAAGTTATCTCTTCTGGAATGATGGGTGGTCCTAGTGGTTCTATGCAATTGATGTATGAAGAGTTGCAAATGCTGTCACCACTTGTTCCTATCAGAGAATTCTACTTCTTGCGTTACTGTACGCAAATTGAGCAAGGTTTATGGGCAATTGTTGATGTTTCCTATGATTTTCCTCATGACAACCAATTTGCTCCGCAATTTCGGTGCCATCGACTTCCTTCTGGTTGCTTCATTCAAGACATGCCTAATGGCTACTCCAAGGTCACTTGGATTGAACATTTGGAGATTGAAGACAAAAATCCAGTTCATAGGCTTTATAGAAATGCTATCTATAGTGGAGCTGCATTTGGAGCTGAAAGATGGCTCACTACTCTTCAAAGGATGTGTGAAAGACTTGCTTGTTCTATGGTTTCTGCCACCCGTGATCTCGGTGGAGCGATTCCATCACCTGAGGGAAAGAGCAGCATGATGAAGCTAGCACAAAGGATGGTAACTAATTTCTGTGCAAGCATAAGTGCATCAGCTAGTCATAGATGGACCACACTTTCAGCTTTGAATGAGGGAGTCAGAGTTACTGTTAGGAAAAGTACTGAGCTTGGTCAGCCTAGTGGTGTTGTGCTATGTGCAGCTACTACCATTTGGCTACCTCTCCCTCCACAAACTGTTTTCAATTTCTTCAAAGATGAAAGGAAAAGATCACAGTGGGATGTTCTTTCTAATGGAAATGCTGTTCAAGAAGTTGCTCATATTGCAAATGGTTCTCACCCTGGCAACTCCATCTCTGTGCTTAGGGCTTTCAACACAAGTCAAAACAACATGTTGATACTTCAAGAAAGCTGTGTGGATTCATCAGGTTCAATTGTAGTCTATTGTCCAATTGAATTAACATCAATGAATGTAGCAATGAGTGGTGAAGACACTTCCCACATTCCAGTAACACCTTCAGGTTTCACAATCACTTCTGATGGAAACACACTTGATAACAATAACAATCTTCAAGGAAGTGGTAATGTTAATGCTGATGGAGCATCAACAAGCTCAAACCTAGGGAACAATGGTGGAAGTGGAGGATCATTGATAACAGTTGCATTCCAAATAATGGTTAGTAGTTTACCATCTGCTAAACTTAACATGGAGTCTGTTGCAACTGTTAATGGACTTATTGGTGAGACTGTCCAACACATCAAAGCTGCTTTAAATTGCCCTAGTTCTTGA
Protein sequence

>Msa0896350

MEYHSGASGSPGDHHHHHHHEGSSDSQRRKKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMKAQHERADNCQLRQENDKIRCENIAIREALKNVICPSCGGPPINDDCFFDEQKLRIENVQLKEELDRVSSIAAKYIGRPITQLPPVAPIHISSLDLSMGNFGGHGMVGGPSLDLDLLPGSSSTMQNIPYQPACLSDMEKSLMSDIASNAMEEMIRLLQTNEPLWMKSNSDGKDVLNLENYERMFPKTNNRLKNPNIRIEASRDSRVVIMNGLALVEMFMDPNQWMALFPTIVTMARTIEVISSGMMGGPSGSMQLMYEELQMLSPLVPIREFYFLRYCTQIEQGLWAIVDVSYDFPHDNQFAPQFRCHRLPSGCFIQDMPNGYSKVTWIEHLEIEDKNPVHRLYRNAIYSGAAFGAERWLTTLQRMCERLACSMVSATRDLGGAIPSPEGKSSMMKLAQRMVTNFCASISASASHRWTTLSALNEGVRVTVRKSTELGQPSGVVLCAATTIWLPLPPQTVFNFFKDERKRSQWDVLSNGNAVQEVAHIANGSHPGNSISVLRAFNTSQNNMLILQESCVDSSGSIVVYCPIELTSMNVAMSGEDTSHIPVTPSGFTITSDGNTLDNNNNLQGSGNVNADGASTSSNLGNNGGSGGSLITVAFQIMVSSLPSAKLNMESVATVNGLIGETVQHIKAALNCPSS*