Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842030 | XP_003612971.3 | 95.840 | 673 | 28 | 0 | 1 | 673 | 1 | 673 | 0.0 | 1336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842030 | sp|Q8RJP2|RHIE_DICD3 | 25.133 | 565 | 324 | 23 | 116 | 667 | 99 | 577 | 1.98e-30 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842030 | A0A396HNJ7 | 95.840 | 673 | 28 | 0 | 1 | 673 | 1 | 673 | 0.0 | 1336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018060 | Msa0842030 | 0.815295 | 9.949175e-52 | -8.615850e-47 |
| Msa0052380 | Msa0842030 | 0.808703 | 2.719323e-50 | -8.615850e-47 |
| Msa0097390 | Msa0842030 | 0.806852 | 6.726150e-50 | -8.615850e-47 |
| Msa0618050 | Msa0842030 | 0.826034 | 3.384776e-54 | -8.615850e-47 |
| Msa0710160 | Msa0842030 | 0.884896 | 1.296013e-71 | -8.615850e-47 |
| Msa0720910 | Msa0842030 | 0.821151 | 4.703244e-53 | -8.615850e-47 |
| Msa0761430 | Msa0842030 | 0.861127 | 1.276136e-63 | -8.615850e-47 |
| Msa0804360 | Msa0842030 | 0.984835 | 9.918664e-162 | -8.615850e-47 |
| Msa0842030 | Msa0842260 | 0.804518 | 2.079119e-49 | -8.615850e-47 |
| Msa0842030 | Msa1199270 | 0.801612 | 8.293751e-49 | -8.615850e-47 |
| Msa0842030 | Msa1290460 | 0.805701 | 1.175624e-49 | -8.615850e-47 |
| Msa0842030 | Msa1418990 | 0.802615 | 5.157570e-49 | -8.615850e-47 |
| Msa0485970 | Msa0842030 | 0.809703 | 1.659348e-50 | -8.615850e-47 |
| Msa0564950 | Msa0842030 | 0.833290 | 5.804746e-56 | -8.615850e-47 |
| Msa0580580 | Msa0842030 | 0.830405 | 2.992427e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842030 | MtrunA17_Chr5g0411781 | 95.840 | 673 | 28 | 0 | 1 | 673 | 1 | 673 | 0.0 | 1336 |
| Msa0842030 | MtrunA17_Chr8g0367141 | 62.463 | 682 | 240 | 6 | 1 | 667 | 16 | 696 | 0.0 | 878 |
| Msa0842030 | MtrunA17_Chr8g0367111 | 61.594 | 690 | 242 | 8 | 1 | 670 | 2 | 688 | 0.0 | 862 |
| Msa0842030 | MtrunA17_Chr8g0367101 | 62.573 | 684 | 239 | 7 | 1 | 669 | 1 | 682 | 0.0 | 857 |
| Msa0842030 | MtrunA17_Chr5g0427851 | 52.987 | 636 | 278 | 8 | 52 | 667 | 9 | 643 | 0.0 | 674 |
| Msa0842030 | MtrunA17_Chr3g0141191 | 53.492 | 630 | 278 | 7 | 52 | 669 | 25 | 651 | 0.0 | 669 |
| Msa0842030 | MtrunA17_Chr3g0141181 | 51.030 | 631 | 292 | 8 | 56 | 672 | 13 | 640 | 0.0 | 657 |
| Msa0842030 | MtrunA17_Chr3g0141171 | 51.712 | 555 | 247 | 6 | 58 | 592 | 29 | 582 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0842030 | AT2G22620.1 | 54.675 | 631 | 273 | 6 | 48 | 670 | 52 | 677 | 0.0 | 707 |
| Msa0842030 | AT2G22620.3 | 54.675 | 631 | 273 | 6 | 48 | 670 | 52 | 677 | 0.0 | 707 |
| Msa0842030 | AT1G09890.4 | 53.045 | 624 | 277 | 9 | 57 | 668 | 14 | 633 | 0.0 | 662 |
| Msa0842030 | AT1G09890.1 | 52.979 | 621 | 276 | 9 | 60 | 668 | 1 | 617 | 0.0 | 658 |
| Msa0842030 | AT1G09890.5 | 52.885 | 624 | 273 | 10 | 57 | 668 | 14 | 628 | 0.0 | 652 |
| Msa0842030 | AT1G09890.3 | 51.080 | 648 | 277 | 10 | 57 | 668 | 14 | 657 | 0.0 | 649 |
| Msa0842030 | AT1G09910.1 | 49.681 | 626 | 301 | 7 | 54 | 669 | 54 | 675 | 0.0 | 641 |
| Msa0842030 | AT1G09910.3 | 49.681 | 626 | 301 | 7 | 54 | 669 | 11 | 632 | 0.0 | 640 |
| Msa0842030 | AT1G09910.2 | 49.681 | 626 | 301 | 7 | 54 | 669 | 11 | 632 | 0.0 | 640 |
| Msa0842030 | AT4G38030.1 | 48.851 | 653 | 303 | 12 | 29 | 668 | 31 | 665 | 0.0 | 637 |
| Msa0842030 | AT4G37950.2 | 51.406 | 640 | 286 | 10 | 44 | 668 | 47 | 676 | 0.0 | 636 |
| Msa0842030 | AT4G37950.1 | 51.406 | 640 | 286 | 10 | 44 | 668 | 47 | 676 | 0.0 | 636 |
| Msa0842030 | AT1G09880.3 | 47.626 | 674 | 325 | 10 | 14 | 669 | 41 | 704 | 0.0 | 635 |
| Msa0842030 | AT1G09880.2 | 47.626 | 674 | 325 | 10 | 14 | 669 | 27 | 690 | 0.0 | 635 |
| Msa0842030 | AT1G09880.4 | 48.402 | 657 | 316 | 9 | 31 | 669 | 7 | 658 | 0.0 | 634 |
| Msa0842030 | AT1G09880.1 | 49.682 | 628 | 294 | 8 | 60 | 669 | 1 | 624 | 0.0 | 629 |
| Msa0842030 | AT4G24430.1 | 51.014 | 641 | 291 | 11 | 45 | 667 | 4 | 639 | 0.0 | 622 |
| Msa0842030 | AT2G22620.4 | 55.882 | 510 | 214 | 4 | 48 | 550 | 52 | 557 | 0.0 | 600 |
| Msa0842030 | AT2G22620.2 | 57.873 | 489 | 200 | 4 | 185 | 670 | 112 | 597 | 0.0 | 585 |
| Msa0842030 | AT1G09890.2 | 51.509 | 530 | 219 | 8 | 57 | 551 | 14 | 540 | 0.0 | 538 |
| Msa0842030 | AT4G24430.2 | 51.908 | 524 | 240 | 8 | 153 | 667 | 1 | 521 | 0.0 | 536 |
| Msa0842030 | AT2G22620.5 | 52.791 | 430 | 190 | 5 | 48 | 470 | 52 | 475 | 2.96e-156 | 459 |
| Msa0842030 | AT1G65210.1 | 54.545 | 187 | 82 | 3 | 483 | 668 | 62 | 246 | 2.16e-60 | 203 |
Find 161 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCCAACTGTTTGGGAAAT+TGG | 0.140397 | 5_4:+18911330 | Msa0842030:CDS |
| ATTCACAGGGCTATCAATTT+TGG | 0.141260 | 5_4:+18910851 | Msa0842030:intron |
| AATCAAGATTTGACTCATTT+TGG | 0.163949 | 5_4:+18912440 | Msa0842030:CDS |
| TTACCTGGTTTAATTGTAAT+TGG | 0.186445 | 5_4:-18910982 | None:intergenic |
| CACCTTTGGTCTATGTTTAT+AGG | 0.189602 | 5_4:-18909241 | None:intergenic |
| CCTAGTGTTCATTTGGTAAA+AGG | 0.192340 | 5_4:+18912394 | Msa0842030:CDS |
| TTTGATTGAATAAAATTATA+AGG | 0.246769 | 5_4:-18910515 | None:intergenic |
| CAAACAGTTGGGCCATTTCT+TGG | 0.250334 | 5_4:-18911321 | None:intergenic |
| CCTTTAAATTGTGGATTAGA+TGG | 0.252359 | 5_4:-18909745 | None:intergenic |
| AACTTGTTTGCATGGGTTCC+TGG | 0.258856 | 5_4:+18910931 | Msa0842030:CDS |
| ACCTTTGGTCTATGTTTATA+GGG | 0.259445 | 5_4:-18909240 | None:intergenic |
| AACCAATACAATCAAGTTAA+TGG | 0.265535 | 5_4:+18909952 | Msa0842030:CDS |
| TCTTTGCCTAATATCTGATA+TGG | 0.276974 | 5_4:-18909650 | None:intergenic |
| TCCCTTACTTTGGCAAATCC+TGG | 0.281064 | 5_4:+18908777 | Msa0842030:CDS |
| TTATAACAAAGTTTCCATTT+TGG | 0.284242 | 5_4:-18910885 | None:intergenic |
| AGAAGGAGAGACTTATAAAA+AGG | 0.289826 | 5_4:+18910287 | Msa0842030:CDS |
| AAGGGCATGGAGTTCTTCTA+TGG | 0.291408 | 5_4:+18909204 | Msa0842030:CDS |
| CCATCTAATCCACAATTTAA+AGG | 0.292305 | 5_4:+18909745 | Msa0842030:CDS |
| AAGTCTCTCCTTCTTGGAAT+TGG | 0.315514 | 5_4:-18910278 | None:intergenic |
| CAAGAAATGGCCCAACTGTT+TGG | 0.318768 | 5_4:+18911322 | Msa0842030:CDS |
| GAATGAGATATGATCTAAAT+AGG | 0.319866 | 5_4:-18906799 | None:intergenic |
| ATAGTGAGAAAAGGCGATTC+TGG | 0.321658 | 5_4:+18909376 | Msa0842030:CDS |
| GGACTTGTAAATGTCCGGTT+AGG | 0.325730 | 5_4:-18910568 | None:intergenic |
| ATTTAGATCATATCTCATTC+AGG | 0.326808 | 5_4:+18906802 | Msa0842030:CDS |
| CTATTAAAGTTGATCAAATA+AGG | 0.328562 | 5_4:+18909443 | Msa0842030:CDS |
| GTGGTTGCTTGAAATTTATT+AGG | 0.329354 | 5_4:-18911850 | None:intergenic |
| TGCATGCAGCTTCAACTATA+TGG | 0.332495 | 5_4:+18909627 | Msa0842030:intron |
| AGTTAGTTACCTGGCTTCCT+TGG | 0.333504 | 5_4:-18909479 | None:intergenic |
| CCCTTACTTTGGCAAATCCT+GGG | 0.334655 | 5_4:+18908778 | Msa0842030:CDS |
| ATGGAATCCATGGATTATAT+TGG | 0.336026 | 5_4:+18912353 | Msa0842030:CDS |
| TTAATAGCAGGGAATCCTTT+TGG | 0.336570 | 5_4:-18909427 | None:intergenic |
| GTCTTAGGAATATCATATTC+TGG | 0.344765 | 5_4:+18908807 | Msa0842030:CDS |
| AAGATCAATTTAAATCTCTA+TGG | 0.348047 | 5_4:+18910352 | Msa0842030:CDS |
| ATCCATTAACTTGATTGTAT+TGG | 0.349422 | 5_4:-18909954 | None:intergenic |
| GTTAGGGTTCCACGTTGATT+AGG | 0.350575 | 5_4:-18910551 | None:intergenic |
| TACATTGGTCTAGCTTGGCC+TGG | 0.352021 | 5_4:+18910720 | Msa0842030:CDS |
| TGGACTAGAGCAGACCAAAA+TGG | 0.352907 | 5_4:+18910871 | Msa0842030:CDS |
| TACCTGCACTTCAGCATTAG+AGG | 0.353948 | 5_4:-18911944 | None:intergenic |
| GCATGGGTTCCTGGCTATAT+TGG | 0.358022 | 5_4:+18910940 | Msa0842030:CDS |
| TATGATAGGTTTAGGCAATA+TGG | 0.358897 | 5_4:+18911635 | Msa0842030:intron |
| TTGCAACTTTGTTTCACGTT+TGG | 0.371024 | 5_4:+18906774 | Msa0842030:CDS |
| ATGGAAAATGTACTTGAATC+TGG | 0.376558 | 5_4:+18908831 | Msa0842030:CDS |
| AAGAAATGGCCCAACTGTTT+GGG | 0.377978 | 5_4:+18911323 | Msa0842030:CDS |
| GGTTTAGGCAATATGGTCTA+TGG | 0.378350 | 5_4:+18911642 | Msa0842030:intron |
| GGAAATGAAGATGATGATAG+AGG | 0.381623 | 5_4:+18908852 | Msa0842030:CDS |
| CTAGCTTGGCCTGGGGATGC+AGG | 0.388413 | 5_4:+18910729 | Msa0842030:CDS |
| TGCCATGATCCTGCATCCCC+AGG | 0.390903 | 5_4:-18910738 | None:intergenic |
| GTGACTGGAGATTGAGCATT+AGG | 0.391971 | 5_4:-18908362 | None:intergenic |
| CTTGTTGTGGTGGTACATAA+TGG | 0.394702 | 5_4:+18906749 | Msa0842030:CDS |
| CCCCAGGATTTGCCAAAGTA+AGG | 0.394846 | 5_4:-18908779 | None:intergenic |
| TACGAGTGAATTCAAGTTGA+TGG | 0.396239 | 5_4:-18911289 | None:intergenic |
| ATGAACACTAGGTACTTCTA+TGG | 0.404001 | 5_4:-18912383 | None:intergenic |
| ACATTGGTCTAGCTTGGCCT+GGG | 0.407469 | 5_4:+18910721 | Msa0842030:CDS |
| AGAAGTACCTAGTGTTCATT+TGG | 0.408895 | 5_4:+18912387 | Msa0842030:CDS |
| GTTAGTTACCTGGCTTCCTT+GGG | 0.409083 | 5_4:-18909478 | None:intergenic |
| AACTTACAGAGAGGCAAGTT+GGG | 0.416244 | 5_4:-18910083 | None:intergenic |
| AATTCTCCAGCTGAGCGATC+TGG | 0.416473 | 5_4:-18911357 | None:intergenic |
| TGTGTTAAGAGAACAGCTTC+AGG | 0.421768 | 5_4:-18909721 | None:intergenic |
| GGTTTCAACTTTGTAGTTGA+AGG | 0.426228 | 5_4:-18912499 | None:intergenic |
| GGTTTAGAGACTAACTGGTC+TGG | 0.426955 | 5_4:-18911435 | None:intergenic |
| ATATGGCCATATCAGATATT+AGG | 0.428625 | 5_4:+18909644 | Msa0842030:CDS |
| GTATATAATCCTCCAAGAAA+TGG | 0.429167 | 5_4:+18911309 | Msa0842030:CDS |
| GTTACCTCTCCTTTAAATTG+TGG | 0.429246 | 5_4:-18909754 | None:intergenic |
| GATGTGAGATCTTGCTTAAC+GGG | 0.429375 | 5_4:-18910051 | None:intergenic |
| GAATTCAAGTAAACAAAGAT+AGG | 0.433996 | 5_4:-18910318 | None:intergenic |
| TATTCTCTTTGTAGTGAAGT+AGG | 0.440880 | 5_4:-18912305 | None:intergenic |
| AATCAACGTGGAACCCTAAC+CGG | 0.443227 | 5_4:+18910554 | Msa0842030:CDS |
| ATTTGATCAACTTTAATAGC+AGG | 0.447303 | 5_4:-18909439 | None:intergenic |
| GTCTTGGACTTGTAAATGTC+CGG | 0.451859 | 5_4:-18910573 | None:intergenic |
| ACGAGGTTAGCGTAAGGCTT+TGG | 0.452758 | 5_4:-18911387 | None:intergenic |
| GGCCTGGGGATGCAGGATCA+TGG | 0.454305 | 5_4:+18910736 | Msa0842030:CDS |
| ACTTGCAGAAGAAGCGTAAG+AGG | 0.454799 | 5_4:+18908335 | Msa0842030:intron |
| TATAGGTATATAGTGAGAAA+AGG | 0.454887 | 5_4:+18909367 | Msa0842030:intron |
| GGTCATACAACTTGTTTGCA+TGG | 0.455272 | 5_4:+18910923 | Msa0842030:CDS |
| CAGGATCTTGTTTACACAGT+TGG | 0.455563 | 5_4:+18911692 | Msa0842030:CDS |
| TGGCATCATGTCCCTTACTT+TGG | 0.456230 | 5_4:+18908767 | Msa0842030:CDS |
| GACTTGTAAATGTCCGGTTA+GGG | 0.463817 | 5_4:-18910567 | None:intergenic |
| TGCCAATTTCCCAAACAGTT+GGG | 0.472457 | 5_4:-18911332 | None:intergenic |
| GGCATTCCAGATCGCTCAGC+TGG | 0.474004 | 5_4:+18911351 | Msa0842030:CDS |
| TGGAAGATTATATTTGATCA+TGG | 0.475105 | 5_4:+18911874 | Msa0842030:CDS |
| GTCATACAACTTGTTTGCAT+GGG | 0.477226 | 5_4:+18910924 | Msa0842030:CDS |
| CAGCATTAGAGGCACTTGCT+AGG | 0.490093 | 5_4:-18911933 | None:intergenic |
| TCGTTAATGTATACCCGTCT+TGG | 0.490306 | 5_4:-18910589 | None:intergenic |
| ATGCCAATTTCCCAAACAGT+TGG | 0.493759 | 5_4:-18911333 | None:intergenic |
| ATTCTCTTTGTAGTGAAGTA+GGG | 0.495420 | 5_4:-18912304 | None:intergenic |
| TGCCTCTAATGCTGAAGTGC+AGG | 0.498076 | 5_4:+18911942 | Msa0842030:CDS |
| GTGGTATTTGAACGACCAAA+AGG | 0.498149 | 5_4:+18909412 | Msa0842030:CDS |
| TTAGTAACTATCGAAAGGAT+TGG | 0.501373 | 5_4:+18911717 | Msa0842030:CDS |
| TACGTCTTTGCCAGCATAGT+GGG | 0.502430 | 5_4:-18910250 | None:intergenic |
| TGTAGTGAAGTAGGGAGGAT+TGG | 0.502730 | 5_4:-18912296 | None:intergenic |
| TAATCGTCAAAATTCTCAGC+AGG | 0.503163 | 5_4:+18908388 | Msa0842030:CDS |
| ATGGACAGATGCTAAACAAA+AGG | 0.504220 | 5_4:+18910371 | Msa0842030:CDS |
| CCTTACTTTGGCAAATCCTG+GGG | 0.509142 | 5_4:+18908779 | Msa0842030:CDS |
| TTTGTAAGCACCCACTATGC+TGG | 0.510502 | 5_4:+18910240 | Msa0842030:CDS |
| ATACCAAGGCATGGAATCCA+TGG | 0.511293 | 5_4:+18912343 | Msa0842030:CDS |
| GTTTAGAGACTAACTGGTCT+GGG | 0.514147 | 5_4:-18911434 | None:intergenic |
| TTTGATCAACTTTAATAGCA+GGG | 0.515830 | 5_4:-18909438 | None:intergenic |
| AGATGTGAGATCTTGCTTAA+CGG | 0.517376 | 5_4:-18910052 | None:intergenic |
| GAACTTACAGAGAGGCAAGT+TGG | 0.518644 | 5_4:-18910084 | None:intergenic |
| GACATTTACAAGTCCAAGAC+GGG | 0.518790 | 5_4:+18910576 | Msa0842030:CDS |
| ATGCATACATTGGTCTAGCT+TGG | 0.520047 | 5_4:+18910715 | Msa0842030:CDS |
| AATTACCATTGCAGAGTCCA+TGG | 0.520639 | 5_4:+18909127 | Msa0842030:intron |
| AGATATTAGGCAAAGAAGAA+TGG | 0.520707 | 5_4:+18909657 | Msa0842030:CDS |
| ATGGATTCCATGCCTTGGTA+TGG | 0.521822 | 5_4:-18912341 | None:intergenic |
| AGCATTAGAGGCACTTGCTA+GGG | 0.522110 | 5_4:-18911932 | None:intergenic |
| CGACTGAGAAACTTGTTCCA+TGG | 0.523830 | 5_4:-18909144 | None:intergenic |
| CTCTCCTTCTTGGAATTGGA+TGG | 0.525171 | 5_4:-18910274 | None:intergenic |
| TACTTCACTACAAAGAGAAT+AGG | 0.542664 | 5_4:+18912307 | Msa0842030:CDS |
| ACAGTTGGGCCATTTCTTGG+AGG | 0.543249 | 5_4:-18911318 | None:intergenic |
| AGGAATATCATATTCTGGAA+TGG | 0.543447 | 5_4:+18908812 | Msa0842030:CDS |
| TTTCAGGTGGTGATTAGCAA+TGG | 0.543809 | 5_4:+18908747 | Msa0842030:intron |
| AATACAATCAAGTTAATGGA+TGG | 0.547110 | 5_4:+18909956 | Msa0842030:CDS |
| TAAACAACCAATATAATCCA+TGG | 0.550594 | 5_4:-18912360 | None:intergenic |
| AATCCATGGATTCCATGCCT+TGG | 0.552884 | 5_4:-18912346 | None:intergenic |
| AGGGTTCCACGTTGATTAGG+TGG | 0.553836 | 5_4:-18910548 | None:intergenic |
| AACACAGAACGAGAATATAG+TGG | 0.554593 | 5_4:+18909168 | Msa0842030:CDS |
| AATTATATATGCAGGAGCAC+AGG | 0.555646 | 5_4:+18911826 | Msa0842030:intron |
| TTGTAATCTCCAATATAGCC+AGG | 0.558313 | 5_4:-18910949 | None:intergenic |
| TATCGACTGAACTCAAAAGT+TGG | 0.559908 | 5_4:+18910492 | Msa0842030:CDS |
| CTTACTTTGGCAAATCCTGG+GGG | 0.563800 | 5_4:+18908780 | Msa0842030:CDS |
| AGGGCATGGAGTTCTTCTAT+GGG | 0.567553 | 5_4:+18909205 | Msa0842030:CDS |
| CCATTGCGGAACTCATTACT+CGG | 0.568971 | 5_4:-18910024 | None:intergenic |
| CTCTTTGTAGTGAAGTAGGG+AGG | 0.571873 | 5_4:-18912301 | None:intergenic |
| CAGCGATTTATATCCAACTC+AGG | 0.575588 | 5_4:+18911673 | Msa0842030:CDS |
| TGAAGATGAACATGAGTGGA+CGG | 0.576125 | 5_4:+18906721 | Msa0842030:CDS |
| CCCAGGATTTGCCAAAGTAA+GGG | 0.577911 | 5_4:-18908778 | None:intergenic |
| TTGGATATAAATCGCTGTAA+CGG | 0.579754 | 5_4:-18911667 | None:intergenic |
| GAAGATGAACATGAGTGGAC+GGG | 0.581852 | 5_4:+18906722 | Msa0842030:CDS |
| ATCATGGCAGAGAGAAAGCA+AGG | 0.584093 | 5_4:+18910752 | Msa0842030:CDS |
| AGTAATGAGTTCCGCAATGG+TGG | 0.585879 | 5_4:+18910027 | Msa0842030:CDS |
| AATGCTAAGAATGCATACAT+TGG | 0.588205 | 5_4:+18910705 | Msa0842030:CDS |
| CTACGTCTTTGCCAGCATAG+TGG | 0.588233 | 5_4:-18910251 | None:intergenic |
| GAAATGAAGATGATGATAGA+GGG | 0.589688 | 5_4:+18908853 | Msa0842030:CDS |
| TGGTGTTAGTAACTATCGAA+AGG | 0.597830 | 5_4:+18911712 | Msa0842030:CDS |
| TTGATTGTATTGGTTCTCAG+TGG | 0.609971 | 5_4:-18909944 | None:intergenic |
| TAATCCACAATTTAAAGGAG+AGG | 0.612404 | 5_4:+18909750 | Msa0842030:CDS |
| GATAGTGCCATACCAAGGCA+TGG | 0.612532 | 5_4:+18912334 | Msa0842030:CDS |
| ATAAATTTCAAGCAACCACA+TGG | 0.612722 | 5_4:+18911854 | Msa0842030:CDS |
| GATCATGGTGCTGTAATAAG+TGG | 0.615908 | 5_4:+18911889 | Msa0842030:CDS |
| CTGTTCACGAGGTTAGCGTA+AGG | 0.616934 | 5_4:-18911393 | None:intergenic |
| TTACTTTGGCAAATCCTGGG+GGG | 0.623303 | 5_4:+18908781 | Msa0842030:CDS |
| CAAGATCTCACATCTCATGT+TGG | 0.624859 | 5_4:+18910060 | Msa0842030:CDS |
| CATTGGTCTAGCTTGGCCTG+GGG | 0.625777 | 5_4:+18910722 | Msa0842030:CDS |
| TCCCTATAAACATAGACCAA+AGG | 0.628590 | 5_4:+18909239 | Msa0842030:CDS |
| GACGGGTTCTCTTGTTGTGG+TGG | 0.629512 | 5_4:+18906739 | Msa0842030:CDS |
| GTGTAAACAAGATCCTGAGT+TGG | 0.634528 | 5_4:-18911686 | None:intergenic |
| GGACATTTACAAGTCCAAGA+CGG | 0.637789 | 5_4:+18910575 | Msa0842030:CDS |
| CCGAGTAATGAGTTCCGCAA+TGG | 0.639316 | 5_4:+18910024 | Msa0842030:CDS |
| ATCAAATATAATCTTCCATG+TGG | 0.640692 | 5_4:-18911869 | None:intergenic |
| TCTCCAATTACAATTAAACC+AGG | 0.641476 | 5_4:+18910979 | Msa0842030:CDS |
| TCAATGAAAGATAGAGATGA+CGG | 0.642085 | 5_4:+18909682 | Msa0842030:CDS |
| AAGATGAAGATGAACATGAG+TGG | 0.643411 | 5_4:+18906717 | None:intergenic |
| GTGGACGGGTTCTCTTGTTG+TGG | 0.651155 | 5_4:+18906736 | Msa0842030:CDS |
| GTAGCCATCCAATTCCAAGA+AGG | 0.653857 | 5_4:+18910270 | Msa0842030:CDS |
| GCTTAACGGGTCCACCATTG+CGG | 0.655063 | 5_4:-18910038 | None:intergenic |
| GCAAACAAGTTGTATGACCC+AGG | 0.663552 | 5_4:-18910919 | None:intergenic |
| GAGATGATAGTGCCATACCA+AGG | 0.696169 | 5_4:+18912329 | Msa0842030:CDS |
| TCGTGAATAATCTGTTCACG+AGG | 0.698648 | 5_4:-18911404 | None:intergenic |
| TAGTTGAAGGACTTTCTAAG+CGG | 0.700259 | 5_4:-18912486 | None:intergenic |
| ACAGAACGAGAATATAGTGG+AGG | 0.712115 | 5_4:+18909171 | Msa0842030:CDS |
| TTCATTCCACCTAATCAACG+TGG | 0.715096 | 5_4:+18910542 | Msa0842030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATATATATATATA+TGG | - | chr5_4:18907422-18907441 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr5_4:18907422-18907441 | Msa0842030:intron | 0.0% |
| !! | CCATAAAAAATATATAATAA+AGG | - | chr5_4:18907300-18907319 | None:intergenic | 10.0% |
| !!! | CCTTTATTATATATTTTTTA+TGG | + | chr5_4:18907297-18907316 | Msa0842030:intron | 10.0% |
| !! | TAATAAAAATTGTGAATTAA+TGG | - | chr5_4:18907603-18907622 | None:intergenic | 10.0% |
| !! | AATTCAATTTAAAAAAACAA+CGG | + | chr5_4:18907851-18907870 | Msa0842030:intron | 10.0% |
| !! | TAAAAATAAAGTAATTAAAC+AGG | + | chr5_4:18907967-18907986 | Msa0842030:intron | 10.0% |
| !! | TAATTATAAACATATTAATG+TGG | + | chr5_4:18908511-18908530 | Msa0842030:intron | 10.0% |
| !! | TTTGATTGAATAAAATTATA+AGG | - | chr5_4:18910518-18910537 | None:intergenic | 10.0% |
| !! | AAAAAATAGGTTTATAATTA+GGG | - | chr5_4:18911522-18911541 | None:intergenic | 10.0% |
| !! | AAAAAAATAGGTTTATAATT+AGG | - | chr5_4:18911523-18911542 | None:intergenic | 10.0% |
| !!! | AGATAATGAAATTATTTTAA+AGG | - | chr5_4:18912052-18912071 | None:intergenic | 10.0% |
| !! | AAAAGAAAGATTAAGAAATA+TGG | - | chr5_4:18906832-18906851 | None:intergenic | 15.0% |
| !! | GTTAACTAATAAATTTGTAA+AGG | - | chr5_4:18907354-18907373 | None:intergenic | 15.0% |
| !! | AAAAATTGGACAAAAAAAAA+AGG | - | chr5_4:18907910-18907929 | None:intergenic | 15.0% |
| !! | ATTTGTATAACAACAAAAAT+TGG | - | chr5_4:18907924-18907943 | None:intergenic | 15.0% |
| !!! | TTTGTTGTTATACAAATATA+AGG | + | chr5_4:18907927-18907946 | Msa0842030:intron | 15.0% |
| !!! | TTGTTGTTATACAAATATAA+GGG | + | chr5_4:18907928-18907947 | Msa0842030:intron | 15.0% |
| !!! | AAAAAGGATATTTTATCTAA+AGG | + | chr5_4:18908092-18908111 | Msa0842030:intron | 15.0% |
| !!! | AAAAGGATATTTTATCTAAA+GGG | + | chr5_4:18908093-18908112 | Msa0842030:intron | 15.0% |
| !!! | GATATTTTAATTATGGTAAA+GGG | - | chr5_4:18908172-18908191 | None:intergenic | 15.0% |
| !!! | CATATTCGATATTTTAATTA+TGG | - | chr5_4:18908179-18908198 | None:intergenic | 15.0% |
| !! | TTAATTATATACTAACTACT+AGG | + | chr5_4:18908411-18908430 | Msa0842030:intron | 15.0% |
| !! | AGTAATATAAAGATTTACAA+TGG | - | chr5_4:18908539-18908558 | None:intergenic | 15.0% |
| !! | ATTGTAAATCTTTATATTAC+TGG | + | chr5_4:18908538-18908557 | Msa0842030:intron | 15.0% |
| !!! | TTTTGAATAATTTTGTTGAA+TGG | - | chr5_4:18908678-18908697 | None:intergenic | 15.0% |
| !!! | ATTTTCTTTAAATGATTTTC+AGG | + | chr5_4:18908731-18908750 | Msa0842030:intron | 15.0% |
| !! | ATAAGAGACTAATTTATAAT+TGG | + | chr5_4:18909104-18909123 | Msa0842030:intron | 15.0% |
| !!! | TTTTATTTTATCAGTGAAAT+TGG | - | chr5_4:18910166-18910185 | None:intergenic | 15.0% |
| !! | TTATAAAAAATATTGTACCT+GGG | + | chr5_4:18910902-18910921 | Msa0842030:CDS | 15.0% |
| !!! | TGTGATATTATTTTGATTAT+TGG | - | chr5_4:18911025-18911044 | None:intergenic | 15.0% |
| !! | TAATTGTTTAGTTAATAGTT+TGG | - | chr5_4:18911109-18911128 | None:intergenic | 15.0% |
| !! | TGAAATATATATTCTATGAT+AGG | + | chr5_4:18911621-18911640 | Msa0842030:intron | 15.0% |
| !!! | TAATATATACTTGAATGTTT+TGG | + | chr5_4:18912236-18912255 | Msa0842030:intron | 15.0% |
| !!! | CATGATTCTTCTATTTTATT+GGG | - | chr5_4:18907220-18907239 | None:intergenic | 20.0% |
| !!! | ATCATGGTTTTAGTATATAA+TGG | + | chr5_4:18907234-18907253 | Msa0842030:intron | 20.0% |
| !! | AAATGACTCTTTATTACAAT+TGG | + | chr5_4:18907539-18907558 | Msa0842030:intron | 20.0% |
| !! | CAATTATACTATATCAACAA+TGG | + | chr5_4:18907570-18907589 | Msa0842030:intron | 20.0% |
| !!! | TATTTTATCTAAAGGGTAAT+TGG | + | chr5_4:18908100-18908119 | Msa0842030:intron | 20.0% |
| !!! | TTCTTTTCCTATTAGTTTTA+GGG | - | chr5_4:18908142-18908161 | None:intergenic | 20.0% |
| !!! | TTTCTTTTCCTATTAGTTTT+AGG | - | chr5_4:18908143-18908162 | None:intergenic | 20.0% |
| !!! | CGATATTTTAATTATGGTAA+AGG | - | chr5_4:18908173-18908192 | None:intergenic | 20.0% |
| !!! | TAAAATATCGAATATGCTTT+TGG | + | chr5_4:18908183-18908202 | Msa0842030:intron | 20.0% |
| !! | AATAGGACAAATAAACAAAA+AGG | - | chr5_4:18908221-18908240 | None:intergenic | 20.0% |
| !! | TTCAATTGAAAAATAGGAAA+GGG | - | chr5_4:18908249-18908268 | None:intergenic | 20.0% |
| !! | ATTCAATTGAAAAATAGGAA+AGG | - | chr5_4:18908250-18908269 | None:intergenic | 20.0% |
| !! | TGTCAATTCAATTGAAAAAT+AGG | - | chr5_4:18908255-18908274 | None:intergenic | 20.0% |
| !! | AATTAAGTCCAAAATTGAAT+AGG | - | chr5_4:18908881-18908900 | None:intergenic | 20.0% |
| !!! | TATGCTTTGTTATTATTACT+AGG | + | chr5_4:18908959-18908978 | Msa0842030:intron | 20.0% |
| !!! | CTATTAAAGTTGATCAAATA+AGG | + | chr5_4:18909443-18909462 | Msa0842030:CDS | 20.0% |
| !! | TTATAACAAGAGCTAATATT+TGG | - | chr5_4:18909556-18909575 | None:intergenic | 20.0% |
| !!! | AATAGGTTTATGCTTTTTTT+TGG | + | chr5_4:18909783-18909802 | Msa0842030:intron | 20.0% |
| !!! | ATAGGTTTATGCTTTTTTTT+GGG | + | chr5_4:18909784-18909803 | Msa0842030:intron | 20.0% |
| !! | AGGTTTATATTATTAGTACA+TGG | + | chr5_4:18909838-18909857 | Msa0842030:intron | 20.0% |
| !! | CATGCAAATAAATTTATGAA+TGG | + | chr5_4:18909883-18909902 | Msa0842030:intron | 20.0% |
| !!! | AGACTTATAAAAAGGTTTTT+GGG | + | chr5_4:18910295-18910314 | Msa0842030:CDS | 20.0% |
| !! | AAGATCAATTTAAATCTCTA+TGG | + | chr5_4:18910352-18910371 | Msa0842030:CDS | 20.0% |
| !! | TTTCTTTACCATATTCATTA+GGG | + | chr5_4:18910668-18910687 | Msa0842030:intron | 20.0% |
| !! | TGAATTATATACAAATTCAC+AGG | + | chr5_4:18910837-18910856 | Msa0842030:intron | 20.0% |
| !! | GAATTATATACAAATTCACA+GGG | + | chr5_4:18910838-18910857 | Msa0842030:intron | 20.0% |
| !!! | TTATAACAAAGTTTCCATTT+TGG | - | chr5_4:18910888-18910907 | None:intergenic | 20.0% |
| !! | GTTATAAAAAATATTGTACC+TGG | + | chr5_4:18910901-18910920 | Msa0842030:CDS | 20.0% |
| !! | AGAGTTGTTATATATAAAGA+AGG | + | chr5_4:18911551-18911570 | Msa0842030:intron | 20.0% |
| !! | GAGTTGTTATATATAAAGAA+GGG | + | chr5_4:18911552-18911571 | Msa0842030:intron | 20.0% |
| !! | ATATATTCTATGATAGGTTT+AGG | + | chr5_4:18911627-18911646 | Msa0842030:intron | 20.0% |
| !! | TAAACTTCAATTATATATGC+AGG | + | chr5_4:18911818-18911837 | Msa0842030:intron | 20.0% |
| !! | GAGAACTGAAAATATATTTA+GGG | - | chr5_4:18912003-18912022 | None:intergenic | 20.0% |
| !! | GAGAATATATTATCTTACAT+CGG | - | chr5_4:18912211-18912230 | None:intergenic | 20.0% |
| ! | GAATGAGATATGATCTAAAT+AGG | - | chr5_4:18906802-18906821 | None:intergenic | 25.0% |
| ! | ATTTAGATCATATCTCATTC+AGG | + | chr5_4:18906802-18906821 | Msa0842030:CDS | 25.0% |
| !!! | CATTTTTAAACAAAGGTATG+CGG | - | chr5_4:18907125-18907144 | None:intergenic | 25.0% |
| !! | ATGTAATCCTTCTCTATTTT+TGG | - | chr5_4:18907181-18907200 | None:intergenic | 25.0% |
| !! | CCATGATTCTTCTATTTTAT+TGG | - | chr5_4:18907221-18907240 | None:intergenic | 25.0% |
| ! | CCAATAAAATAGAAGAATCA+TGG | + | chr5_4:18907218-18907237 | Msa0842030:intron | 25.0% |
| !!! | AATTTTTTCTGAGAAGACAT+GGG | - | chr5_4:18907263-18907282 | None:intergenic | 25.0% |
| !!! | AAATTTTTTCTGAGAAGACA+TGG | - | chr5_4:18907264-18907283 | None:intergenic | 25.0% |
| ! | TCTTTATTACAATTGGATAC+AGG | + | chr5_4:18907546-18907565 | Msa0842030:intron | 25.0% |
| !! | TCCTATAGACTTAACTTTTA+CGG | + | chr5_4:18907666-18907685 | Msa0842030:intron | 25.0% |
| ! | AATAAAATCATAGTGCTTTG+AGG | - | chr5_4:18907720-18907739 | None:intergenic | 25.0% |
| ! | AGTAATTAAACAGGATGTAT+AGG | + | chr5_4:18907976-18907995 | Msa0842030:intron | 25.0% |
| ! | AGATTCCAATATTCCAATAT+AGG | + | chr5_4:18908064-18908083 | Msa0842030:intron | 25.0% |
| ! | TCAATTGAAAAATAGGAAAG+GGG | - | chr5_4:18908248-18908267 | None:intergenic | 25.0% |
| !!! | TTTTGAAACAGAAATGCTTA+AGG | + | chr5_4:18908435-18908454 | Msa0842030:intron | 25.0% |
| ! | ATATTACTGGAAAAATCCAA+CGG | + | chr5_4:18908551-18908570 | Msa0842030:intron | 25.0% |
| ! | CTGCAATGTAACAAATTTAA+AGG | - | chr5_4:18908615-18908634 | None:intergenic | 25.0% |
| !!! | TTCTTTAAATGATTTTCAGG+TGG | + | chr5_4:18908734-18908753 | Msa0842030:intron | 25.0% |
| ! | TGTTAATGAATATAAGCTTG+TGG | - | chr5_4:18908905-18908924 | None:intergenic | 25.0% |
| ! | ACAAAGCATAATTATGTCAA+TGG | - | chr5_4:18908949-18908968 | None:intergenic | 25.0% |
| !!! | TTTTTGGCAAAACATTTCAA+AGG | + | chr5_4:18908995-18909014 | Msa0842030:CDS | 25.0% |
| ! | TTGATTATGAACATGTTTCT+TGG | + | chr5_4:18909302-18909321 | Msa0842030:intron | 25.0% |
| ! | TATAGGTATATAGTGAGAAA+AGG | + | chr5_4:18909367-18909386 | Msa0842030:intron | 25.0% |
| ! | TTTGATCAACTTTAATAGCA+GGG | - | chr5_4:18909441-18909460 | None:intergenic | 25.0% |
| ! | ATTTGATCAACTTTAATAGC+AGG | - | chr5_4:18909442-18909461 | None:intergenic | 25.0% |
| !!! | ATTTTTGATAGTTAGTTACC+TGG | - | chr5_4:18909491-18909510 | None:intergenic | 25.0% |
| ! | AACCAATACAATCAAGTTAA+TGG | + | chr5_4:18909952-18909971 | Msa0842030:CDS | 25.0% |
| !! | ATCCATTAACTTGATTGTAT+TGG | - | chr5_4:18909957-18909976 | None:intergenic | 25.0% |
| ! | AATACAATCAAGTTAATGGA+TGG | + | chr5_4:18909956-18909975 | Msa0842030:CDS | 25.0% |
| !! | GAGACTTATAAAAAGGTTTT+TGG | + | chr5_4:18910294-18910313 | Msa0842030:CDS | 25.0% |
| ! | GAATTCAAGTAAACAAAGAT+AGG | - | chr5_4:18910321-18910340 | None:intergenic | 25.0% |
| ! | GGGAGTAAATAAATAAATCA+TGG | - | chr5_4:18910419-18910438 | None:intergenic | 25.0% |
| ! | GTCATTGCATACTAATAAAT+GGG | - | chr5_4:18910439-18910458 | None:intergenic | 25.0% |
| ! | TGTCATTGCATACTAATAAA+TGG | - | chr5_4:18910440-18910459 | None:intergenic | 25.0% |
| ! | CTTTCTTTACCATATTCATT+AGG | + | chr5_4:18910667-18910686 | Msa0842030:intron | 25.0% |
| ! | TTCTTTACCATATTCATTAG+GGG | + | chr5_4:18910669-18910688 | Msa0842030:intron | 25.0% |
| ! | TTACCTGGTTTAATTGTAAT+TGG | - | chr5_4:18910985-18911004 | None:intergenic | 25.0% |
| ! | ATTTATTTGCAAACTTTACC+TGG | - | chr5_4:18911000-18911019 | None:intergenic | 25.0% |
| !! | CGTCACTAGTAATAATTTTT+CGG | - | chr5_4:18911054-18911073 | None:intergenic | 25.0% |
| ! | GTAACAATGTGTATATATGT+AGG | + | chr5_4:18911261-18911280 | Msa0842030:intron | 25.0% |
| ! | GAACGTCAACTATTTAATAA+TGG | - | chr5_4:18911459-18911478 | None:intergenic | 25.0% |
| !! | ATATATTTCATTCGAGTTAG+TGG | - | chr5_4:18911611-18911630 | None:intergenic | 25.0% |
| ! | ATCAAATATAATCTTCCATG+TGG | - | chr5_4:18911872-18911891 | None:intergenic | 25.0% |
| ! | TGGAAGATTATATTTGATCA+TGG | + | chr5_4:18911874-18911893 | Msa0842030:CDS | 25.0% |
| ! | CGAGAACTGAAAATATATTT+AGG | - | chr5_4:18912004-18912023 | None:intergenic | 25.0% |
| !! | TATTTTCAGTTCTCGAAATA+CGG | + | chr5_4:18912009-18912028 | Msa0842030:intron | 25.0% |
| ! | TATTGGTAAAACTTTCTTTG+TGG | - | chr5_4:18912179-18912198 | None:intergenic | 25.0% |
| ! | TAAACAACCAATATAATCCA+TGG | - | chr5_4:18912363-18912382 | None:intergenic | 25.0% |
| !! | AATCAAGATTTGACTCATTT+TGG | + | chr5_4:18912440-18912459 | Msa0842030:CDS | 25.0% |
| !! | CTGCTTACCGTTTTAAATAA+CGG | + | chr5_4:18906968-18906987 | Msa0842030:intron | 30.0% |
| AGTGCAACCGTTATTTAAAA+CGG | - | chr5_4:18906978-18906997 | None:intergenic | 30.0% | |
| TAGAGAATCACAATCAAATG+CGG | + | chr5_4:18907032-18907051 | Msa0842030:intron | 30.0% | |
| TTCAAATTGCAACACAATCA+CGG | - | chr5_4:18907073-18907092 | None:intergenic | 30.0% | |
| TTTGAACAACCATTACATTG+CGG | + | chr5_4:18907087-18907106 | Msa0842030:intron | 30.0% | |
| ! | GCATGCACATTTTTAAACAA+AGG | - | chr5_4:18907132-18907151 | None:intergenic | 30.0% |
| !!! | AATCCTTCTCTATTTTTGGT+AGG | - | chr5_4:18907177-18907196 | None:intergenic | 30.0% |
| ACCGTAAAAGTTAAGTCTAT+AGG | - | chr5_4:18907670-18907689 | None:intergenic | 30.0% | |
| AGAATAACGATATTTGCACT+TGG | - | chr5_4:18908009-18908028 | None:intergenic | 30.0% | |
| AGCAACCTATATTGGAATAT+TGG | - | chr5_4:18908072-18908091 | None:intergenic | 30.0% | |
| TCCAATATAGGTTGCTAAAA+AGG | + | chr5_4:18908076-18908095 | Msa0842030:intron | 30.0% | |
| !! | TCCTTTTTAGCAACCTATAT+TGG | - | chr5_4:18908080-18908099 | None:intergenic | 30.0% |
| TTTATCTAAAGGGTAATTGG+AGG | + | chr5_4:18908103-18908122 | Msa0842030:intron | 30.0% | |
| AAGCATTCCCTAAAACTAAT+AGG | + | chr5_4:18908132-18908151 | Msa0842030:intron | 30.0% | |
| ! | TTTTGACGATTAATAGTGAC+TGG | - | chr5_4:18908380-18908399 | None:intergenic | 30.0% |
| CTTCAAACTGCGATTAAAAA+AGG | + | chr5_4:18908647-18908666 | Msa0842030:intron | 30.0% | |
| AACTGCGATTAAAAAAGGAT+AGG | + | chr5_4:18908652-18908671 | Msa0842030:intron | 30.0% | |
| GTCTTAGGAATATCATATTC+TGG | + | chr5_4:18908807-18908826 | Msa0842030:CDS | 30.0% | |
| ! | AGGAATATCATATTCTGGAA+TGG | + | chr5_4:18908812-18908831 | Msa0842030:CDS | 30.0% |
| ATGGAAAATGTACTTGAATC+TGG | + | chr5_4:18908831-18908850 | Msa0842030:CDS | 30.0% | |
| GAAATGAAGATGATGATAGA+GGG | + | chr5_4:18908853-18908872 | Msa0842030:CDS | 30.0% | |
| !! | TAGTGGAGGTTTCATTTTTA+AGG | + | chr5_4:18909185-18909204 | Msa0842030:CDS | 30.0% |
| !! | AGTGGAGGTTTCATTTTTAA+GGG | + | chr5_4:18909186-18909205 | Msa0842030:CDS | 30.0% |
| ACCTTTGGTCTATGTTTATA+GGG | - | chr5_4:18909243-18909262 | None:intergenic | 30.0% | |
| AAATCCTAGTCCCAATTATT+TGG | + | chr5_4:18909264-18909283 | Msa0842030:intron | 30.0% | |
| ACAAACTGTGCCAAATAATT+GGG | - | chr5_4:18909277-18909296 | None:intergenic | 30.0% | |
| ATATGGCCATATCAGATATT+AGG | + | chr5_4:18909644-18909663 | Msa0842030:CDS | 30.0% | |
| TCTTTGCCTAATATCTGATA+TGG | - | chr5_4:18909653-18909672 | None:intergenic | 30.0% | |
| AGATATTAGGCAAAGAAGAA+TGG | + | chr5_4:18909657-18909676 | Msa0842030:CDS | 30.0% | |
| TCAATGAAAGATAGAGATGA+CGG | + | chr5_4:18909682-18909701 | Msa0842030:CDS | 30.0% | |
| !! | CCTTTAAATTGTGGATTAGA+TGG | - | chr5_4:18909748-18909767 | None:intergenic | 30.0% |
| CCATCTAATCCACAATTTAA+AGG | + | chr5_4:18909745-18909764 | Msa0842030:CDS | 30.0% | |
| TAATCCACAATTTAAAGGAG+AGG | + | chr5_4:18909750-18909769 | Msa0842030:CDS | 30.0% | |
| GGAGAGGTAACAAAATAAAT+AGG | + | chr5_4:18909766-18909785 | Msa0842030:intron | 30.0% | |
| !! | CTCAATTTGGTGCTATTAAT+AGG | + | chr5_4:18909818-18909837 | Msa0842030:intron | 30.0% |
| CATGAAAAACCAGAACTAAA+CGG | - | chr5_4:18910140-18910159 | None:intergenic | 30.0% | |
| ! | TTTTATAAGTCTCTCCTTCT+TGG | - | chr5_4:18910287-18910306 | None:intergenic | 30.0% |
| AGAAGGAGAGACTTATAAAA+AGG | + | chr5_4:18910287-18910306 | Msa0842030:CDS | 30.0% | |
| TCTTTACCATATTCATTAGG+GGG | + | chr5_4:18910670-18910689 | Msa0842030:intron | 30.0% | |
| AATGCTAAGAATGCATACAT+TGG | + | chr5_4:18910705-18910724 | Msa0842030:CDS | 30.0% | |
| TCTCCAATTACAATTAAACC+AGG | + | chr5_4:18910979-18910998 | Msa0842030:CDS | 30.0% | |
| GTATATAATCCTCCAAGAAA+TGG | + | chr5_4:18911309-18911328 | Msa0842030:CDS | 30.0% | |
| ATAATGGTTTAGAGACTAAC+TGG | - | chr5_4:18911443-18911462 | None:intergenic | 30.0% | |
| ! | CTCTTTTGCGCTAAAAAAAT+AGG | - | chr5_4:18911535-18911554 | None:intergenic | 30.0% |
| TATATATAAAGAAGGGACAG+AGG | + | chr5_4:18911559-18911578 | Msa0842030:intron | 30.0% | |
| TATGATAGGTTTAGGCAATA+TGG | + | chr5_4:18911635-18911654 | Msa0842030:intron | 30.0% | |
| TTGGATATAAATCGCTGTAA+CGG | - | chr5_4:18911670-18911689 | None:intergenic | 30.0% | |
| ! | CTTGTTTAAGTGTCATGTTT+TGG | + | chr5_4:18911793-18911812 | Msa0842030:intron | 30.0% |
| GTGGTTGCTTGAAATTTATT+AGG | - | chr5_4:18911853-18911872 | None:intergenic | 30.0% | |
| ATAAATTTCAAGCAACCACA+TGG | + | chr5_4:18911854-18911873 | Msa0842030:CDS | 30.0% | |
| ! | AATACGGTAGTTATTGCTTT+TGG | + | chr5_4:18912025-18912044 | Msa0842030:intron | 30.0% |
| TACATCGGTGTATACTTTAT+TGG | - | chr5_4:18912196-18912215 | None:intergenic | 30.0% | |
| ATTCTCTTTGTAGTGAAGTA+GGG | - | chr5_4:18912307-18912326 | None:intergenic | 30.0% | |
| TATTCTCTTTGTAGTGAAGT+AGG | - | chr5_4:18912308-18912327 | None:intergenic | 30.0% | |
| TACTTCACTACAAAGAGAAT+AGG | + | chr5_4:18912307-18912326 | Msa0842030:CDS | 30.0% | |
| ! | ATGGAATCCATGGATTATAT+TGG | + | chr5_4:18912353-18912372 | Msa0842030:CDS | 30.0% |
| ! | TTGCAACTTTGTTTCACGTT+TGG | + | chr5_4:18906774-18906793 | Msa0842030:CDS | 35.0% |
| GAAGCAAGATCAAGCAAATA+TGG | - | chr5_4:18906863-18906882 | None:intergenic | 35.0% | |
| CTTCCTACCAAAAATAGAGA+AGG | + | chr5_4:18907171-18907190 | Msa0842030:intron | 35.0% | |
| !! | TGCAATTACTTTTACACGTC+TGG | + | chr5_4:18907485-18907504 | Msa0842030:intron | 35.0% |
| ! | TATATGAGAGAGTGTGTCAT+GGG | - | chr5_4:18907747-18907766 | None:intergenic | 35.0% |
| ! | TTATATGAGAGAGTGTGTCA+TGG | - | chr5_4:18907748-18907767 | None:intergenic | 35.0% |
| ! | TCGTTATTCTGTCACTTCTA+AGG | + | chr5_4:18908019-18908038 | Msa0842030:intron | 35.0% |
| ! | CGTTATTCTGTCACTTCTAA+GGG | + | chr5_4:18908020-18908039 | Msa0842030:intron | 35.0% |
| ! | GTTATTCTGTCACTTCTAAG+GGG | + | chr5_4:18908021-18908040 | Msa0842030:intron | 35.0% |
| AATAGGAAAGGGGAAACAAT+AGG | - | chr5_4:18908238-18908257 | None:intergenic | 35.0% | |
| TAATCGTCAAAATTCTCAGC+AGG | + | chr5_4:18908388-18908407 | Msa0842030:CDS | 35.0% | |
| GGAAATGAAGATGATGATAG+AGG | + | chr5_4:18908852-18908871 | Msa0842030:CDS | 35.0% | |
| !!! | AGAGGGTACCTATTCAATTT+TGG | + | chr5_4:18908870-18908889 | Msa0842030:intron | 35.0% |
| !! | AGGTACTTTGACGTTGTTTT+TGG | + | chr5_4:18908979-18908998 | Msa0842030:intron | 35.0% |
| AACACAGAACGAGAATATAG+TGG | + | chr5_4:18909168-18909187 | Msa0842030:CDS | 35.0% | |
| !! | AGGTTTCATTTTTAAGGGCA+TGG | + | chr5_4:18909191-18909210 | Msa0842030:CDS | 35.0% |
| TCCCTATAAACATAGACCAA+AGG | + | chr5_4:18909239-18909258 | Msa0842030:CDS | 35.0% | |
| CACCTTTGGTCTATGTTTAT+AGG | - | chr5_4:18909244-18909263 | None:intergenic | 35.0% | |
| CACAAACTGTGCCAAATAAT+TGG | - | chr5_4:18909278-18909297 | None:intergenic | 35.0% | |
| ! | TTCTGGATTTTACACTTACG+TGG | + | chr5_4:18909393-18909412 | Msa0842030:CDS | 35.0% |
| ! | TTAATAGCAGGGAATCCTTT+TGG | - | chr5_4:18909430-18909449 | None:intergenic | 35.0% |
| !!! | AAGGACTGTTTTTAAACCCA+AGG | + | chr5_4:18909462-18909481 | Msa0842030:CDS | 35.0% |
| ! | TAGAGATGACGGTCAAAAAT+TGG | + | chr5_4:18909693-18909712 | Msa0842030:CDS | 35.0% |
| GTTACCTCTCCTTTAAATTG+TGG | - | chr5_4:18909757-18909776 | None:intergenic | 35.0% | |
| !! | GGTGTCATTTCTACTCAATT+TGG | + | chr5_4:18909805-18909824 | Msa0842030:intron | 35.0% |
| GAATGGTTTATGTTGCACTT+AGG | + | chr5_4:18909900-18909919 | Msa0842030:intron | 35.0% | |
| !! | TTGATTGTATTGGTTCTCAG+TGG | - | chr5_4:18909947-18909966 | None:intergenic | 35.0% |
| TGTTATGATCCAAAAACCCA+CGG | - | chr5_4:18910004-18910023 | None:intergenic | 35.0% | |
| AGATGTGAGATCTTGCTTAA+CGG | - | chr5_4:18910055-18910074 | None:intergenic | 35.0% | |
| ATGGACAGATGCTAAACAAA+AGG | + | chr5_4:18910371-18910390 | Msa0842030:CDS | 35.0% | |
| ! | TATCGACTGAACTCAAAAGT+TGG | + | chr5_4:18910492-18910511 | Msa0842030:CDS | 35.0% |
| CTTTACCATATTCATTAGGG+GGG | + | chr5_4:18910671-18910690 | Msa0842030:intron | 35.0% | |
| TTTACCATATTCATTAGGGG+GGG | + | chr5_4:18910672-18910691 | Msa0842030:intron | 35.0% | |
| ! | ATTCACAGGGCTATCAATTT+TGG | + | chr5_4:18910851-18910870 | Msa0842030:intron | 35.0% |
| ! | GTCATACAACTTGTTTGCAT+GGG | + | chr5_4:18910924-18910943 | Msa0842030:CDS | 35.0% |
| TTGTAATCTCCAATATAGCC+AGG | - | chr5_4:18910952-18910971 | None:intergenic | 35.0% | |
| TACAAACTAATTGCGTCTCT+AGG | + | chr5_4:18911164-18911183 | Msa0842030:intron | 35.0% | |
| !! | TACGAGTGAATTCAAGTTGA+TGG | - | chr5_4:18911292-18911311 | None:intergenic | 35.0% |
| CAACAGAAAGCTAATTACCT+TGG | - | chr5_4:18911758-18911777 | None:intergenic | 35.0% | |
| ! | AATTATATATGCAGGAGCAC+AGG | + | chr5_4:18911826-18911845 | Msa0842030:intron | 35.0% |
| ATGAACACTAGGTACTTCTA+TGG | - | chr5_4:18912386-18912405 | None:intergenic | 35.0% | |
| !! | AGAAGTACCTAGTGTTCATT+TGG | + | chr5_4:18912387-18912406 | Msa0842030:CDS | 35.0% |
| ! | CCTTTTACCAAATGAACACT+AGG | - | chr5_4:18912397-18912416 | None:intergenic | 35.0% |
| CCTAGTGTTCATTTGGTAAA+AGG | + | chr5_4:18912394-18912413 | Msa0842030:CDS | 35.0% | |
| !! | AGATTTGACTCATTTTGGCA+AGG | + | chr5_4:18912445-18912464 | Msa0842030:CDS | 35.0% |
| TAGTTGAAGGACTTTCTAAG+CGG | - | chr5_4:18912489-18912508 | None:intergenic | 35.0% | |
| GGTTTCAACTTTGTAGTTGA+AGG | - | chr5_4:18912502-18912521 | None:intergenic | 35.0% | |
| TGAAGATGAACATGAGTGGA+CGG | + | chr5_4:18906721-18906740 | Msa0842030:CDS | 40.0% | |
| ! | CTTGTTGTGGTGGTACATAA+TGG | + | chr5_4:18906749-18906768 | Msa0842030:CDS | 40.0% |
| GGTTGCACTAACAATTGCAA+CGG | + | chr5_4:18906989-18907008 | Msa0842030:intron | 40.0% | |
| CAATCTGAACCGCAATGTAA+TGG | - | chr5_4:18907099-18907118 | None:intergenic | 40.0% | |
| AGTGAAATGTTGCATGCAGA+TGG | - | chr5_4:18907325-18907344 | None:intergenic | 40.0% | |
| !! | AGGAGCATTCAATGTGTATG+TGG | - | chr5_4:18907700-18907719 | None:intergenic | 40.0% |
| ! | TTTCAGGTGGTGATTAGCAA+TGG | + | chr5_4:18908747-18908766 | Msa0842030:intron | 40.0% |
| AATTACCATTGCAGAGTCCA+TGG | + | chr5_4:18909127-18909146 | Msa0842030:intron | 40.0% | |
| ACAGAACGAGAATATAGTGG+AGG | + | chr5_4:18909171-18909190 | Msa0842030:CDS | 40.0% | |
| TGTGCCAAATAATTGGGACT+AGG | - | chr5_4:18909271-18909290 | None:intergenic | 40.0% | |
| ATAGTGAGAAAAGGCGATTC+TGG | + | chr5_4:18909376-18909395 | Msa0842030:CDS | 40.0% | |
| GTGGTATTTGAACGACCAAA+AGG | + | chr5_4:18909412-18909431 | Msa0842030:CDS | 40.0% | |
| ! | TTTTTAAACCCAAGGAAGCC+AGG | + | chr5_4:18909470-18909489 | Msa0842030:CDS | 40.0% |
| TGCATGCAGCTTCAACTATA+TGG | + | chr5_4:18909627-18909646 | Msa0842030:intron | 40.0% | |
| TGTGTTAAGAGAACAGCTTC+AGG | - | chr5_4:18909724-18909743 | None:intergenic | 40.0% | |
| TGGTTTATGTTGCACTTAGG+TGG | + | chr5_4:18909903-18909922 | Msa0842030:intron | 40.0% | |
| GTTATGATCCAAAAACCCAC+GGG | - | chr5_4:18910003-18910022 | None:intergenic | 40.0% | |
| GATGTGAGATCTTGCTTAAC+GGG | - | chr5_4:18910054-18910073 | None:intergenic | 40.0% | |
| CAAGATCTCACATCTCATGT+TGG | + | chr5_4:18910060-18910079 | Msa0842030:CDS | 40.0% | |
| AACTTACAGAGAGGCAAGTT+GGG | - | chr5_4:18910086-18910105 | None:intergenic | 40.0% | |
| GATGTGTTGAACTTACAGAG+AGG | - | chr5_4:18910095-18910114 | None:intergenic | 40.0% | |
| CTAAACGGACGATATGTAAC+AGG | - | chr5_4:18910125-18910144 | None:intergenic | 40.0% | |
| ! | ACATATCGTCCGTTTAGTTC+TGG | + | chr5_4:18910128-18910147 | Msa0842030:intron | 40.0% |
| AAGTCTCTCCTTCTTGGAAT+TGG | - | chr5_4:18910281-18910300 | None:intergenic | 40.0% | |
| TTCATTCCACCTAATCAACG+TGG | + | chr5_4:18910542-18910561 | Msa0842030:CDS | 40.0% | |
| GACTTGTAAATGTCCGGTTA+GGG | - | chr5_4:18910570-18910589 | None:intergenic | 40.0% | |
| GTCTTGGACTTGTAAATGTC+CGG | - | chr5_4:18910576-18910595 | None:intergenic | 40.0% | |
| GGACATTTACAAGTCCAAGA+CGG | + | chr5_4:18910575-18910594 | Msa0842030:CDS | 40.0% | |
| GACATTTACAAGTCCAAGAC+GGG | + | chr5_4:18910576-18910595 | Msa0842030:CDS | 40.0% | |
| TCGTTAATGTATACCCGTCT+TGG | - | chr5_4:18910592-18910611 | None:intergenic | 40.0% | |
| ! | ATGCATACATTGGTCTAGCT+TGG | + | chr5_4:18910715-18910734 | Msa0842030:CDS | 40.0% |
| ! | GGTCATACAACTTGTTTGCA+TGG | + | chr5_4:18910923-18910942 | Msa0842030:CDS | 40.0% |
| AAGAAATGGCCCAACTGTTT+GGG | + | chr5_4:18911323-18911342 | Msa0842030:CDS | 40.0% | |
| TGCCAATTTCCCAAACAGTT+GGG | - | chr5_4:18911335-18911354 | None:intergenic | 40.0% | |
| ATGCCAATTTCCCAAACAGT+TGG | - | chr5_4:18911336-18911355 | None:intergenic | 40.0% | |
| TCGTGAATAATCTGTTCACG+AGG | - | chr5_4:18911407-18911426 | None:intergenic | 40.0% | |
| ! | GTTTAGAGACTAACTGGTCT+GGG | - | chr5_4:18911437-18911456 | None:intergenic | 40.0% |
| GGACAGAGATAGTAGAAACT+GGG | - | chr5_4:18911501-18911520 | None:intergenic | 40.0% | |
| ATATAAAGAAGGGACAGAGG+TGG | + | chr5_4:18911562-18911581 | Msa0842030:intron | 40.0% | |
| GGTTTAGGCAATATGGTCTA+TGG | + | chr5_4:18911642-18911661 | Msa0842030:intron | 40.0% | |
| CAGCGATTTATATCCAACTC+AGG | + | chr5_4:18911673-18911692 | Msa0842030:CDS | 40.0% | |
| GTGTAAACAAGATCCTGAGT+TGG | - | chr5_4:18911689-18911708 | None:intergenic | 40.0% | |
| ! | CAGGATCTTGTTTACACAGT+TGG | + | chr5_4:18911692-18911711 | Msa0842030:CDS | 40.0% |
| !! | GGTTTTATGCTCATGTTCCA+AGG | + | chr5_4:18911738-18911757 | Msa0842030:CDS | 40.0% |
| !! | GATCATGGTGCTGTAATAAG+TGG | + | chr5_4:18911889-18911908 | Msa0842030:CDS | 40.0% |
| ACTGACAAGCATCATAGAGA+GGG | - | chr5_4:18912114-18912133 | None:intergenic | 40.0% | |
| GTCAGTCATGTATCTCTATG+TGG | + | chr5_4:18912128-18912147 | Msa0842030:intron | 40.0% | |
| !! | GTTTTGGATGATGTGTGATC+AGG | + | chr5_4:18912252-18912271 | Msa0842030:intron | 40.0% |
| GAAGATGAACATGAGTGGAC+GGG | + | chr5_4:18906722-18906741 | Msa0842030:CDS | 45.0% | |
| TTGCAACACAATCACGGTTG+AGG | - | chr5_4:18907067-18907086 | None:intergenic | 45.0% | |
| AGATGGTGCAGGGGAATATT+TGG | - | chr5_4:18907387-18907406 | None:intergenic | 45.0% | |
| AAATATTCCCCTGCACCATC+TGG | + | chr5_4:18907386-18907405 | Msa0842030:intron | 45.0% | |
| ! | ATTCTGTCACTTCTAAGGGG+TGG | + | chr5_4:18908024-18908043 | Msa0842030:intron | 45.0% |
| CTGCAAGTGGAAACAATGCA+AGG | - | chr5_4:18908323-18908342 | None:intergenic | 45.0% | |
| TCTTACGCTTCTTCTGCAAG+TGG | - | chr5_4:18908336-18908355 | None:intergenic | 45.0% | |
| ! | ACTTGCAGAAGAAGCGTAAG+AGG | + | chr5_4:18908335-18908354 | Msa0842030:intron | 45.0% |
| GTGACTGGAGATTGAGCATT+AGG | - | chr5_4:18908365-18908384 | None:intergenic | 45.0% | |
| TGGCATCATGTCCCTTACTT+TGG | + | chr5_4:18908767-18908786 | Msa0842030:CDS | 45.0% | |
| TCCCTTACTTTGGCAAATCC+TGG | + | chr5_4:18908777-18908796 | Msa0842030:CDS | 45.0% | |
| CCCAGGATTTGCCAAAGTAA+GGG | - | chr5_4:18908781-18908800 | None:intergenic | 45.0% | |
| CCCTTACTTTGGCAAATCCT+GGG | + | chr5_4:18908778-18908797 | Msa0842030:CDS | 45.0% | |
| CCTTACTTTGGCAAATCCTG+GGG | + | chr5_4:18908779-18908798 | Msa0842030:CDS | 45.0% | |
| CTTACTTTGGCAAATCCTGG+GGG | + | chr5_4:18908780-18908799 | Msa0842030:CDS | 45.0% | |
| TTACTTTGGCAAATCCTGGG+GGG | + | chr5_4:18908781-18908800 | Msa0842030:CDS | 45.0% | |
| TTGTTCCATGGACTCTGCAA+TGG | - | chr5_4:18909135-18909154 | None:intergenic | 45.0% | |
| ! | CGACTGAGAAACTTGTTCCA+TGG | - | chr5_4:18909147-18909166 | None:intergenic | 45.0% |
| ! | AAGGGCATGGAGTTCTTCTA+TGG | + | chr5_4:18909204-18909223 | Msa0842030:CDS | 45.0% |
| AGGGCATGGAGTTCTTCTAT+GGG | + | chr5_4:18909205-18909224 | Msa0842030:CDS | 45.0% | |
| TGGGACTAGGATTTCACCTT+TGG | - | chr5_4:18909258-18909277 | None:intergenic | 45.0% | |
| GTTAGTTACCTGGCTTCCTT+GGG | - | chr5_4:18909481-18909500 | None:intergenic | 45.0% | |
| AGTTAGTTACCTGGCTTCCT+TGG | - | chr5_4:18909482-18909501 | None:intergenic | 45.0% | |
| GTTGAAGCTGCATGCATCAT+TGG | - | chr5_4:18909623-18909642 | None:intergenic | 45.0% | |
| !! | CACGGGTTTTTCAGAATCTG+CGG | - | chr5_4:18909986-18910005 | None:intergenic | 45.0% |
| ! | GCAGATTCTGAAAAACCCGT+GGG | + | chr5_4:18909985-18910004 | Msa0842030:CDS | 45.0% |
| ! | CTGAAAAACCCGTGGGTTTT+TGG | + | chr5_4:18909992-18910011 | Msa0842030:CDS | 45.0% |
| CCATTGCGGAACTCATTACT+CGG | - | chr5_4:18910027-18910046 | None:intergenic | 45.0% | |
| AGTAATGAGTTCCGCAATGG+TGG | + | chr5_4:18910027-18910046 | Msa0842030:CDS | 45.0% | |
| GAACTTACAGAGAGGCAAGT+TGG | - | chr5_4:18910087-18910106 | None:intergenic | 45.0% | |
| TTTGTAAGCACCCACTATGC+TGG | + | chr5_4:18910240-18910259 | Msa0842030:CDS | 45.0% | |
| TACGTCTTTGCCAGCATAGT+GGG | - | chr5_4:18910253-18910272 | None:intergenic | 45.0% | |
| GTAGCCATCCAATTCCAAGA+AGG | + | chr5_4:18910270-18910289 | Msa0842030:CDS | 45.0% | |
| CTCTCCTTCTTGGAATTGGA+TGG | - | chr5_4:18910277-18910296 | None:intergenic | 45.0% | |
| ! | GTTAGGGTTCCACGTTGATT+AGG | - | chr5_4:18910554-18910573 | None:intergenic | 45.0% |
| AATCAACGTGGAACCCTAAC+CGG | + | chr5_4:18910554-18910573 | Msa0842030:CDS | 45.0% | |
| GGACTTGTAAATGTCCGGTT+AGG | - | chr5_4:18910571-18910590 | None:intergenic | 45.0% | |
| TTTGCCCCCCCTAATGAATA+TGG | - | chr5_4:18910679-18910698 | None:intergenic | 45.0% | |
| ATCATGGCAGAGAGAAAGCA+AGG | + | chr5_4:18910752-18910771 | Msa0842030:CDS | 45.0% | |
| ! | TGGACTAGAGCAGACCAAAA+TGG | + | chr5_4:18910871-18910890 | Msa0842030:CDS | 45.0% |
| GCAAACAAGTTGTATGACCC+AGG | - | chr5_4:18910922-18910941 | None:intergenic | 45.0% | |
| ! | AACTTGTTTGCATGGGTTCC+TGG | + | chr5_4:18910931-18910950 | Msa0842030:CDS | 45.0% |
| CAAACAGTTGGGCCATTTCT+TGG | - | chr5_4:18911324-18911343 | None:intergenic | 45.0% | |
| CAAGAAATGGCCCAACTGTT+TGG | + | chr5_4:18911322-18911341 | Msa0842030:CDS | 45.0% | |
| GGTTTAGAGACTAACTGGTC+TGG | - | chr5_4:18911438-18911457 | None:intergenic | 45.0% | |
| GGGACAGAGATAGTAGAAAC+TGG | - | chr5_4:18911502-18911521 | None:intergenic | 45.0% | |
| !! | AGCATTAGAGGCACTTGCTA+GGG | - | chr5_4:18911935-18911954 | None:intergenic | 45.0% |
| TACCTGCACTTCAGCATTAG+AGG | - | chr5_4:18911947-18911966 | None:intergenic | 45.0% | |
| GACTGACAAGCATCATAGAG+AGG | - | chr5_4:18912115-18912134 | None:intergenic | 45.0% | |
| GGATGATGTGTGATCAGGTT+TGG | + | chr5_4:18912257-18912276 | Msa0842030:intron | 45.0% | |
| TGTAGTGAAGTAGGGAGGAT+TGG | - | chr5_4:18912299-18912318 | None:intergenic | 45.0% | |
| CTCTTTGTAGTGAAGTAGGG+AGG | - | chr5_4:18912304-18912323 | None:intergenic | 45.0% | |
| ! | GAGATGATAGTGCCATACCA+AGG | + | chr5_4:18912329-18912348 | Msa0842030:CDS | 45.0% |
| ATGGATTCCATGCCTTGGTA+TGG | - | chr5_4:18912344-18912363 | None:intergenic | 45.0% | |
| ATACCAAGGCATGGAATCCA+TGG | + | chr5_4:18912343-18912362 | Msa0842030:CDS | 45.0% | |
| AATCCATGGATTCCATGCCT+TGG | - | chr5_4:18912349-18912368 | None:intergenic | 45.0% | |
| !! | CATAAAAAATATATAATAAA+GGG | - | chr5_4:18907299-18907318 | None:intergenic | 5.0% |
| !!! | TTGAATAAATATATTTTTAT+AGG | + | chr5_4:18909350-18909369 | Msa0842030:intron | 5.0% |
| TATGGACACACACTGCCAGA+TGG | - | chr5_4:18907404-18907423 | None:intergenic | 50.0% | |
| ! | ATGAGAGAGTGTGTCATGGG+TGG | - | chr5_4:18907744-18907763 | None:intergenic | 50.0% |
| CCCCAGGATTTGCCAAAGTA+AGG | - | chr5_4:18908782-18908801 | None:intergenic | 50.0% | |
| ! | AATCCTGGGGGGTATGTCTT+AGG | + | chr5_4:18908792-18908811 | Msa0842030:CDS | 50.0% |
| ATTCCTAAGACATACCCCCC+AGG | - | chr5_4:18908798-18908817 | None:intergenic | 50.0% | |
| ! | CGCAGATTCTGAAAAACCCG+TGG | + | chr5_4:18909984-18910003 | Msa0842030:CDS | 50.0% |
| CCGAGTAATGAGTTCCGCAA+TGG | + | chr5_4:18910024-18910043 | Msa0842030:CDS | 50.0% | |
| CTACGTCTTTGCCAGCATAG+TGG | - | chr5_4:18910254-18910273 | None:intergenic | 50.0% | |
| ! | AGGGTTCCACGTTGATTAGG+TGG | - | chr5_4:18910551-18910570 | None:intergenic | 50.0% |
| ! | TACATTGGTCTAGCTTGGCC+TGG | + | chr5_4:18910720-18910739 | Msa0842030:CDS | 50.0% |
| ! | ACATTGGTCTAGCTTGGCCT+GGG | + | chr5_4:18910721-18910740 | Msa0842030:CDS | 50.0% |
| GCATGGGTTCCTGGCTATAT+TGG | + | chr5_4:18910940-18910959 | Msa0842030:CDS | 50.0% | |
| ACAGTTGGGCCATTTCTTGG+AGG | - | chr5_4:18911321-18911340 | None:intergenic | 50.0% | |
| GGCCCAACTGTTTGGGAAAT+TGG | + | chr5_4:18911330-18911349 | Msa0842030:CDS | 50.0% | |
| AATTCTCCAGCTGAGCGATC+TGG | - | chr5_4:18911360-18911379 | None:intergenic | 50.0% | |
| ACGAGGTTAGCGTAAGGCTT+TGG | - | chr5_4:18911390-18911409 | None:intergenic | 50.0% | |
| CTGTTCACGAGGTTAGCGTA+AGG | - | chr5_4:18911396-18911415 | None:intergenic | 50.0% | |
| !! | CAGCATTAGAGGCACTTGCT+AGG | - | chr5_4:18911936-18911955 | None:intergenic | 50.0% |
| TGCCTCTAATGCTGAAGTGC+AGG | + | chr5_4:18911942-18911961 | Msa0842030:CDS | 50.0% | |
| GATAGTGCCATACCAAGGCA+TGG | + | chr5_4:18912334-18912353 | Msa0842030:CDS | 50.0% | |
| ! | GTGGACGGGTTCTCTTGTTG+TGG | + | chr5_4:18906736-18906755 | Msa0842030:CDS | 55.0% |
| ! | GACGGGTTCTCTTGTTGTGG+TGG | + | chr5_4:18906739-18906758 | Msa0842030:CDS | 55.0% |
| ACACACTGCCAGATGGTGCA+GGG | - | chr5_4:18907397-18907416 | None:intergenic | 55.0% | |
| GCGATTGCGATCATGTCCGT+TGG | - | chr5_4:18908570-18908589 | None:intergenic | 55.0% | |
| ! | GCTTAACGGGTCCACCATTG+CGG | - | chr5_4:18910041-18910060 | None:intergenic | 55.0% |
| ! | CATTGGTCTAGCTTGGCCTG+GGG | + | chr5_4:18910722-18910741 | Msa0842030:CDS | 55.0% |
| CACACTGCCAGATGGTGCAG+GGG | - | chr5_4:18907396-18907415 | None:intergenic | 60.0% | |
| CACACACTGCCAGATGGTGC+AGG | - | chr5_4:18907398-18907417 | None:intergenic | 60.0% | |
| TGCCATGATCCTGCATCCCC+AGG | - | chr5_4:18910741-18910760 | None:intergenic | 60.0% | |
| GGCATTCCAGATCGCTCAGC+TGG | + | chr5_4:18911351-18911370 | Msa0842030:CDS | 60.0% | |
| CTAGCTTGGCCTGGGGATGC+AGG | + | chr5_4:18910729-18910748 | Msa0842030:CDS | 65.0% | |
| GGCCTGGGGATGCAGGATCA+TGG | + | chr5_4:18910736-18910755 | Msa0842030:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 18906720 | 18912525 | 18906720 | ID=Msa0842030;Name=Msa0842030 |
| chr5_4 | mRNA | 18906720 | 18912525 | 18906720 | ID=Msa0842030-mRNA-1;Parent=Msa0842030;Name=Msa0842030-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.13|0.06|1|1|1|16|0|674 |
| chr5_4 | exon | 18906720 | 18906823 | 18906720 | ID=Msa0842030-mRNA-1:exon:7879;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18908343 | 18908409 | 18908343 | ID=Msa0842030-mRNA-1:exon:7880;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18908753 | 18908874 | 18908753 | ID=Msa0842030-mRNA-1:exon:7881;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18908981 | 18909016 | 18908981 | ID=Msa0842030-mRNA-1:exon:7882;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18909141 | 18909260 | 18909141 | ID=Msa0842030-mRNA-1:exon:7883;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18909372 | 18909491 | 18909372 | ID=Msa0842030-mRNA-1:exon:7884;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18909636 | 18909771 | 18909636 | ID=Msa0842030-mRNA-1:exon:7885;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18909922 | 18910098 | 18909922 | ID=Msa0842030-mRNA-1:exon:7886;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18910237 | 18910392 | 18910237 | ID=Msa0842030-mRNA-1:exon:7887;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18910491 | 18910597 | 18910491 | ID=Msa0842030-mRNA-1:exon:7888;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18910689 | 18910773 | 18910689 | ID=Msa0842030-mRNA-1:exon:7889;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18910859 | 18911000 | 18910859 | ID=Msa0842030-mRNA-1:exon:7890;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18911283 | 18911442 | 18911283 | ID=Msa0842030-mRNA-1:exon:7891;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18911643 | 18911759 | 18911643 | ID=Msa0842030-mRNA-1:exon:7892;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18911840 | 18911963 | 18911840 | ID=Msa0842030-mRNA-1:exon:7893;Parent=Msa0842030-mRNA-1 |
| chr5_4 | exon | 18912274 | 18912525 | 18912274 | ID=Msa0842030-mRNA-1:exon:7894;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18906720 | 18906823 | 18906720 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18908343 | 18908409 | 18908343 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18908753 | 18908874 | 18908753 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18908981 | 18909016 | 18908981 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18909141 | 18909260 | 18909141 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18909372 | 18909491 | 18909372 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18909636 | 18909771 | 18909636 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18909922 | 18910098 | 18909922 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18910237 | 18910392 | 18910237 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18910491 | 18910597 | 18910491 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18910689 | 18910773 | 18910689 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18910859 | 18911000 | 18910859 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18911283 | 18911442 | 18911283 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18911643 | 18911759 | 18911643 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18911840 | 18911963 | 18911840 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| chr5_4 | CDS | 18912274 | 18912525 | 18912274 | ID=Msa0842030-mRNA-1:cds;Parent=Msa0842030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
