Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846730 | XP_003614009.2 | 55.556 | 135 | 28 | 1 | 299 | 433 | 210 | 312 | 8.71e-31 | 131 |
| Msa0846730 | XP_003614009.2 | 81.494 | 308 | 23 | 2 | 1 | 274 | 1 | 308 | 1.20e-153 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846730 | G7JXW7 | 55.556 | 135 | 28 | 1 | 299 | 433 | 210 | 312 | 4.16e-31 | 131 |
| Msa0846730 | G7JXW7 | 81.494 | 308 | 23 | 2 | 1 | 274 | 1 | 308 | 5.71e-154 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616510 | Msa0846730 | 0.837043 | 6.560648e-57 | -8.615850e-47 |
| Msa0650660 | Msa0846730 | 0.804494 | 2.102783e-49 | -8.615850e-47 |
| Msa0650750 | Msa0846730 | 0.805870 | 1.083144e-49 | -8.615850e-47 |
| Msa0699840 | Msa0846730 | 0.841859 | 3.679332e-58 | -8.615850e-47 |
| Msa0164400 | Msa0846730 | 0.815501 | 8.952604e-52 | -8.615850e-47 |
| Msa0194820 | Msa0846730 | 0.823804 | 1.137316e-53 | -8.615850e-47 |
| Msa0194840 | Msa0846730 | 0.823131 | 1.633698e-53 | -8.615850e-47 |
| Msa0388770 | Msa0846730 | 0.805971 | 1.031438e-49 | -8.615850e-47 |
| Msa0418970 | Msa0846730 | 0.806563 | 7.739603e-50 | -8.615850e-47 |
| Msa0435550 | Msa0846730 | 0.801293 | 9.640726e-49 | -8.615850e-47 |
| Msa0562620 | Msa0846730 | 0.803828 | 2.894101e-49 | -8.615850e-47 |
| Msa0579330 | Msa0846730 | 0.800689 | 1.280790e-48 | -8.615850e-47 |
| Msa0846730 | Msa1020630 | 0.802815 | 4.691360e-49 | -8.615850e-47 |
| Msa0846730 | Msa1271040 | 0.813804 | 2.125926e-51 | -8.615850e-47 |
| Msa0846730 | Msa1341890 | 0.839505 | 1.522448e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846730 | MtrunA17_Chr5g0418651 | 81.494 | 308 | 23 | 2 | 1 | 274 | 1 | 308 | 1.10e-157 | 447 |
| Msa0846730 | MtrunA17_Chr5g0418651 | 55.556 | 135 | 28 | 1 | 299 | 433 | 210 | 312 | 8.01e-35 | 131 |
| Msa0846730 | MtrunA17_Chr4g0042991 | 36.176 | 387 | 126 | 10 | 1 | 272 | 1 | 381 | 3.12e-38 | 142 |
| Msa0846730 | MtrunA17_Chr4g0042991 | 40.876 | 137 | 50 | 1 | 297 | 433 | 282 | 387 | 2.10e-16 | 80.5 |
| Msa0846730 | MtrunA17_Chr5g0418641 | 84.000 | 75 | 11 | 1 | 8 | 81 | 1 | 75 | 3.93e-31 | 114 |
| Msa0846730 | MtrunA17_Chr3g0086051 | 34.615 | 104 | 68 | 0 | 169 | 272 | 151 | 254 | 4.85e-15 | 75.1 |
| Msa0846730 | MtrunA17_Chr5g0418631 | 50.000 | 96 | 35 | 3 | 336 | 423 | 2 | 92 | 1.40e-12 | 63.9 |
| Msa0846730 | MtrunA17_Chr5g0418631 | 66.667 | 54 | 17 | 1 | 213 | 265 | 36 | 89 | 6.19e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846730 | AT1G13920.1 | 39.130 | 138 | 51 | 2 | 297 | 433 | 240 | 345 | 1.18e-17 | 84.3 |
| Msa0846730 | AT1G13920.4 | 39.130 | 138 | 51 | 2 | 297 | 433 | 273 | 378 | 1.44e-17 | 84.3 |
| Msa0846730 | AT5G61280.2 | 34.783 | 115 | 73 | 1 | 164 | 278 | 123 | 235 | 3.31e-16 | 78.2 |
| Msa0846730 | AT5G61280.1 | 34.783 | 115 | 73 | 1 | 164 | 278 | 146 | 258 | 5.29e-16 | 78.2 |
| Msa0846730 | AT1G69325.1 | 44.444 | 99 | 55 | 0 | 174 | 272 | 18 | 116 | 2.30e-14 | 69.7 |
Find 88 sgRNAs with CRISPR-Local
Find 350 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATTGGTGGTGGCGGTGGC+GGG | 0.267031 | 5_4:-27388080 | None:intergenic |
| TGCATTATCAATTAATTTGC+AGG | 0.274227 | 5_4:+27387564 | Msa0846730:CDS |
| AAATATTACCTTTGAAAGAT+TGG | 0.293146 | 5_4:-27387053 | None:intergenic |
| ATAGTAGAATGGAGAATTTA+TGG | 0.301842 | 5_4:+27386388 | Msa0846730:exon |
| GAAGAAAGGTTGAAACCTTT+GGG | 0.305032 | 5_4:+27391871 | Msa0846730:CDS |
| ATAATTGGTGGTGGCGGTGG+CGG | 0.306446 | 5_4:-27388081 | None:intergenic |
| AATTGGTGGTGGCGGTGGCG+GGG | 0.311891 | 5_4:-27388079 | None:intergenic |
| ATCTCTGAAGTCTTCATAAT+TGG | 0.323102 | 5_4:-27388096 | None:intergenic |
| TGAAGAAAGGTTGAAACCTT+TGG | 0.328156 | 5_4:+27391870 | Msa0846730:CDS |
| ACGGAGAAGGTTAAAAGCTT+TGG | 0.348890 | 5_4:+27388629 | Msa0846730:CDS |
| ATTGGTGGTGGCGGTGGCGG+GGG | 0.361406 | 5_4:-27388078 | None:intergenic |
| TGAAAATGTTGATAGATTCC+TGG | 0.363230 | 5_4:+27388351 | Msa0846730:CDS |
| CCTGTTGTAGTCTGTCTTAG+AGG | 0.376234 | 5_4:-27388126 | None:intergenic |
| TTCCTTCGCTAGCTTGCGTT+TGG | 0.377600 | 5_4:-27391518 | None:intergenic |
| TTTGTTAGGGTACAACTTAC+CGG | 0.378969 | 5_4:+27386967 | Msa0846730:intron |
| CGAAAGAGCGGATAGATTCC+TGG | 0.384743 | 5_4:+27391473 | Msa0846730:CDS |
| AATATTACCTTTGAAAGATT+GGG | 0.397926 | 5_4:-27387052 | None:intergenic |
| TTGCTTCATTAGCTTGCGTT+TGG | 0.400523 | 5_4:-27388396 | None:intergenic |
| CAAACAATGCGCACAGGAAT+GGG | 0.431330 | 5_4:+27391311 | Msa0846730:CDS |
| AAACAGCTTTCAGGTAAAAC+AGG | 0.436606 | 5_4:+27387490 | Msa0846730:CDS |
| GTAGTCTGTCTTAGAGGATC+AGG | 0.438277 | 5_4:-27388120 | None:intergenic |
| AGAAGAAGAAGGGCCAGAAT+TGG | 0.439656 | 5_4:+27387461 | Msa0846730:CDS |
| CCTCTAAGACAGACTACAAC+AGG | 0.445039 | 5_4:+27388126 | Msa0846730:CDS |
| AATGAAGAGCTACAAGCAAA+AGG | 0.447061 | 5_4:+27388729 | Msa0846730:CDS |
| TCTCCATTCTACTATTAGCT+AGG | 0.447913 | 5_4:-27386380 | None:intergenic |
| CTCCATTCTACTATTAGCTA+GGG | 0.450997 | 5_4:-27386379 | None:intergenic |
| GCAAGTACAATTTCAACAAC+AGG | 0.459062 | 5_4:+27392096 | Msa0846730:CDS |
| TTCATAATTGGTGGTGGCGG+TGG | 0.460521 | 5_4:-27388084 | None:intergenic |
| GGGAGACAGATGCAGATGAA+TGG | 0.461311 | 5_4:+27388160 | Msa0846730:CDS |
| TTTCTATGTGGTCGTAATCA+TGG | 0.462345 | 5_4:-27387513 | None:intergenic |
| CATTGTTGGCGTAGGAGTAA+TGG | 0.466358 | 5_4:-27387992 | None:intergenic |
| CTACAACAGGATCAAACAAT+GGG | 0.477695 | 5_4:+27388139 | Msa0846730:CDS |
| CTTCCTCTTCTTGTCTACCC+AGG | 0.480371 | 5_4:-27391491 | None:intergenic |
| GAGGAGAACAAAGCTGATCT+TGG | 0.481626 | 5_4:+27386994 | Msa0846730:CDS |
| TCAAACAATGCGCACAGGAA+TGG | 0.490106 | 5_4:+27391310 | Msa0846730:CDS |
| TGATTACGACCACATAGAAA+TGG | 0.492344 | 5_4:+27387516 | Msa0846730:CDS |
| GAAAATGTTGATAGATTCCT+GGG | 0.493456 | 5_4:+27388352 | Msa0846730:CDS |
| TGCAGAGTGAACTTGAAGAA+AGG | 0.496563 | 5_4:+27391857 | Msa0846730:intron |
| GGAGACAGATGCAGATGAAT+GGG | 0.502514 | 5_4:+27388161 | Msa0846730:CDS |
| ACGCAAGCTAGCGAAGGAAC+AGG | 0.502780 | 5_4:+27391522 | Msa0846730:CDS |
| TATGTGAATCTAGTTGCAAA+AGG | 0.505322 | 5_4:+27392015 | Msa0846730:CDS |
| ATGAAGAGCTACAAGCAAAA+GGG | 0.506299 | 5_4:+27388730 | Msa0846730:CDS |
| AGCTTTGTTCTCCTCCGTAC+CGG | 0.507897 | 5_4:-27386986 | None:intergenic |
| AACCCTAGCTAATAGTAGAA+TGG | 0.508474 | 5_4:+27386377 | Msa0846730:exon |
| AGTTGTAGAAGAAAAGAAAC+CGG | 0.517846 | 5_4:+27387963 | Msa0846730:CDS |
| TCTGAAGTCTTCATAATTGG+TGG | 0.519146 | 5_4:-27388093 | None:intergenic |
| AGAATTTATGGAGTCAAATG+AGG | 0.520763 | 5_4:+27386400 | Msa0846730:CDS |
| TATGTAAAACTAGTTGCAAA+CGG | 0.533130 | 5_4:+27391916 | Msa0846730:CDS |
| AGAAGAAAAGAAACCGGAAA+AGG | 0.548483 | 5_4:+27387969 | Msa0846730:CDS |
| GTCTTCATAATTGGTGGTGG+CGG | 0.550990 | 5_4:-27388087 | None:intergenic |
| ATTTAGATCTAAAGATGACC+AGG | 0.556568 | 5_4:+27387918 | Msa0846730:CDS |
| GAAGTCTTCATAATTGGTGG+TGG | 0.559569 | 5_4:-27388090 | None:intergenic |
| AATTGCAGAGTGAAATTGAT+CGG | 0.561728 | 5_4:+27391950 | Msa0846730:CDS |
| TGCAGACGGCGCAAGAGCAA+AGG | 0.562482 | 5_4:+27388689 | Msa0846730:CDS |
| ATTCCTGGGTAGACAAGAAG+AGG | 0.566055 | 5_4:+27391488 | Msa0846730:CDS |
| TCGCTAATTGCGAAACATCA+AGG | 0.566964 | 5_4:+27392152 | Msa0846730:three_prime_UTR |
| CAGAAAACCCAATCTTTCAA+AGG | 0.570940 | 5_4:+27387045 | Msa0846730:CDS |
| GAAAGAGCGGATAGATTCCT+GGG | 0.571450 | 5_4:+27391474 | Msa0846730:CDS |
| AGAGTGAAATTGAACGGAGA+AGG | 0.576979 | 5_4:+27388616 | Msa0846730:intron |
| ATCTTGGTGCCACAAGAGAT+CGG | 0.579109 | 5_4:+27387010 | Msa0846730:CDS |
| AAGAAAGGTTGAAACCTTTG+GGG | 0.579827 | 5_4:+27391872 | Msa0846730:CDS |
| AATTGCAGAGTGAAATTGAA+CGG | 0.580588 | 5_4:+27388610 | Msa0846730:intron |
| CGGCGCAAGAGCAAAGGTCG+AGG | 0.580597 | 5_4:+27388695 | Msa0846730:CDS |
| AGCCAAACGCAAGCTAGCGA+AGG | 0.582355 | 5_4:+27391516 | Msa0846730:CDS |
| ATGTTCAACAGAGAAGAAGA+AGG | 0.587013 | 5_4:+27387450 | Msa0846730:intron |
| ATGTTGACGCCTTGTCACCC+TGG | 0.599021 | 5_4:-27387936 | None:intergenic |
| TAGGGTACAACTTACCGGTA+CGG | 0.607951 | 5_4:+27386972 | Msa0846730:intron |
| TAAAGATGACCAGGGTGACA+AGG | 0.610189 | 5_4:+27387927 | Msa0846730:CDS |
| ACGCAAGCTAATGAAGCAAG+AGG | 0.611713 | 5_4:+27388400 | Msa0846730:CDS |
| ACTACAACAGGATCAAACAA+TGG | 0.614774 | 5_4:+27388138 | Msa0846730:CDS |
| AGGAGGAGCATTTGGCGCTG+TGG | 0.618095 | 5_4:-27388052 | None:intergenic |
| GAACAACGTGCAAACTGCCA+CGG | 0.619729 | 5_4:+27388769 | Msa0846730:CDS |
| CATGATCAAACAATGCGCAC+AGG | 0.621935 | 5_4:+27391305 | Msa0846730:CDS |
| TGTTCAACAGAGAAGAAGAA+GGG | 0.638777 | 5_4:+27387451 | Msa0846730:intron |
| AGAGCTACAAGCAAAAGAGA+AGG | 0.643295 | 5_4:+27392074 | Msa0846730:CDS |
| TGCAAAAGGAGCGAGAGACA+AGG | 0.645612 | 5_4:+27392029 | Msa0846730:CDS |
| TATGTAAATCTAGTTGCAGA+CGG | 0.648425 | 5_4:+27388675 | Msa0846730:CDS |
| CAGCATGCACCATTTCTATG+TGG | 0.651802 | 5_4:-27387525 | None:intergenic |
| CAAATTAATTGATAATGCAG+CGG | 0.651965 | 5_4:-27387560 | None:intergenic |
| AGAGCTACAAGCAAAAGGGA+AGG | 0.666489 | 5_4:+27388734 | Msa0846730:CDS |
| TTTAGATCTAAAGATGACCA+GGG | 0.678368 | 5_4:+27387919 | Msa0846730:CDS |
| CAGAAGCAGAAATACGTCTG+TGG | 0.688002 | 5_4:-27392126 | None:intergenic |
| AACTCGACAAGATCAAACAA+AGG | 0.689212 | 5_4:+27388193 | Msa0846730:CDS |
| GGTACAACTTACCGGTACGG+AGG | 0.692894 | 5_4:+27386975 | Msa0846730:CDS |
| GGTATGAGAAGTCGAAAGAG+CGG | 0.693587 | 5_4:+27391461 | Msa0846730:intron |
| CAGAAGCAGAAATACATCCG+TGG | 0.701166 | 5_4:-27388786 | None:intergenic |
| AGCTCGACAAGATCAAACAA+AGG | 0.706606 | 5_4:+27391343 | Msa0846730:CDS |
| TACAACAGGATCAAACAATG+GGG | 0.783663 | 5_4:+27388140 | Msa0846730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATAATAAGTGATAAA+AGG | + | chr5_4:27390952-27390971 | Msa0846730:intron | 10.0% |
| !!! | TTTCTTTTCCTTTTATTTTT+TGG | - | chr5_4:27387342-27387361 | None:intergenic | 15.0% |
| !!! | AAGTTTATTTTGATACAAAT+TGG | - | chr5_4:27389261-27389280 | None:intergenic | 15.0% |
| !!! | CACTTATATATAGATTTTTT+AGG | - | chr5_4:27389337-27389356 | None:intergenic | 15.0% |
| !! | AAAAGTCTAGTTAATAAATA+AGG | + | chr5_4:27389431-27389450 | Msa0846730:intron | 15.0% |
| !! | AATAAATAAGGATATGAAAT+TGG | + | chr5_4:27389443-27389462 | Msa0846730:intron | 15.0% |
| !! | CAAAATATTGACAAAAAAAA+AGG | + | chr5_4:27389529-27389548 | Msa0846730:intron | 15.0% |
| !!! | CCTTATTTATTAATTTTGTT+AGG | - | chr5_4:27389674-27389693 | None:intergenic | 15.0% |
| !! | CCTAACAAAATTAATAAATA+AGG | + | chr5_4:27389671-27389690 | Msa0846730:intron | 15.0% |
| !! | AATTAATAAATAAGGATATC+TGG | + | chr5_4:27389679-27389698 | Msa0846730:intron | 15.0% |
| !! | TACAATATTTACCATGTTAA+TGG | + | chr5_4:27386512-27386531 | Msa0846730:intron | 20.0% |
| !! | AAAAAAGTGATTATGAAGTT+TGG | - | chr5_4:27386713-27386732 | None:intergenic | 20.0% |
| !!! | ATTACATGAACAATTTTGTT+AGG | + | chr5_4:27386953-27386972 | Msa0846730:intron | 20.0% |
| !!! | TTACATGAACAATTTTGTTA+GGG | + | chr5_4:27386954-27386973 | Msa0846730:intron | 20.0% |
| !!! | AATATTACCTTTGAAAGATT+GGG | - | chr5_4:27387055-27387074 | None:intergenic | 20.0% |
| !!! | AAATATTACCTTTGAAAGAT+TGG | - | chr5_4:27387056-27387075 | None:intergenic | 20.0% |
| !! | ATAATAAAGAGGAAAAGAAA+AGG | + | chr5_4:27387238-27387257 | Msa0846730:intron | 20.0% |
| !! | ATTATGATTCATAAATGAAG+TGG | - | chr5_4:27387824-27387843 | None:intergenic | 20.0% |
| !!! | GTTTTTCTACTTAAGAATAA+TGG | - | chr5_4:27387849-27387868 | None:intergenic | 20.0% |
| !! | TATTAATGAAAAACATTGTC+AGG | + | chr5_4:27388318-27388337 | Msa0846730:intron | 20.0% |
| !! | AATGATAAAAGAAACTAGAA+AGG | + | chr5_4:27388533-27388552 | Msa0846730:intron | 20.0% |
| !!! | TCACTAGCTTTATAATATTT+TGG | - | chr5_4:27389071-27389090 | None:intergenic | 20.0% |
| !!! | TCAACTAAAAAGTATTTATG+TGG | - | chr5_4:27389191-27389210 | None:intergenic | 20.0% |
| !!! | TTGTACACTTTTTTTTTTGA+AGG | - | chr5_4:27389512-27389531 | None:intergenic | 20.0% |
| !!! | TTTTTTAGATGGAATTTGTT+AGG | + | chr5_4:27389585-27389604 | Msa0846730:intron | 20.0% |
| !! | ATATTACAATGCTTACAATA+GGG | - | chr5_4:27389818-27389837 | None:intergenic | 20.0% |
| !! | AATATTACAATGCTTACAAT+AGG | - | chr5_4:27389819-27389838 | None:intergenic | 20.0% |
| !! | AATATGAGTTACATGAATAA+CGG | - | chr5_4:27390165-27390184 | None:intergenic | 20.0% |
| !!! | CTTTTTAATCCATATATCTA+TGG | - | chr5_4:27390711-27390730 | None:intergenic | 20.0% |
| !! | TATTAATGAAAAACATTGTC+AGG | + | chr5_4:27388318-27388337 | Msa0846730:intron | 20.0% |
| !! | GAATAAGACACAAATTTAAT+AGG | - | chr5_4:27391655-27391674 | None:intergenic | 20.0% |
| !! | TGATAAAAAAAAAACTAGAG+AGG | + | chr5_4:27391764-27391783 | Msa0846730:intron | 20.0% |
| ! | ATAGTAGAATGGAGAATTTA+TGG | + | chr5_4:27386388-27386407 | Msa0846730:exon | 25.0% |
| ! | AAATATTGTAACAACAAGCT+AGG | - | chr5_4:27386502-27386521 | None:intergenic | 25.0% |
| ! | AATATTTACCATGTTAATGG+TGG | + | chr5_4:27386515-27386534 | Msa0846730:intron | 25.0% |
| !!! | TTGAAAAAGCTAGTTTTTCA+AGG | + | chr5_4:27386546-27386565 | Msa0846730:intron | 25.0% |
| !! | AGAAAACATGAGATTTTCAA+TGG | - | chr5_4:27386648-27386667 | None:intergenic | 25.0% |
| !!! | CTCACACCATTTTATTTTAA+GGG | + | chr5_4:27386746-27386765 | Msa0846730:intron | 25.0% |
| ! | TCAAGACCCTTAAAATAAAA+TGG | - | chr5_4:27386755-27386774 | None:intergenic | 25.0% |
| ! | TTGATATAGCTATCATTGAT+CGG | - | chr5_4:27386818-27386837 | None:intergenic | 25.0% |
| !! | AAGATGCTCATAATTTTCAT+TGG | + | chr5_4:27386921-27386940 | Msa0846730:intron | 25.0% |
| ! | TAAGATGTATCTAATGTGTT+TGG | - | chr5_4:27387122-27387141 | None:intergenic | 25.0% |
| ! | AACCATTAAGCATAATAAAG+AGG | + | chr5_4:27387227-27387246 | Msa0846730:intron | 25.0% |
| ! | TTCCTCTTTATTATGCTTAA+TGG | - | chr5_4:27387232-27387251 | None:intergenic | 25.0% |
| ! | GATAATGCATAATATATGCA+GGG | + | chr5_4:27387291-27387310 | Msa0846730:intron | 25.0% |
| !!! | CTTTTCCTTTTATTTTTTGG+TGG | - | chr5_4:27387339-27387358 | None:intergenic | 25.0% |
| !!! | CAAATTAATTGATAATGCAG+CGG | - | chr5_4:27387563-27387582 | None:intergenic | 25.0% |
| !!! | TGCATTATCAATTAATTTGC+AGG | + | chr5_4:27387564-27387583 | Msa0846730:CDS | 25.0% |
| ! | CAAAACTAAATCCTTAAACA+AGG | - | chr5_4:27389000-27389019 | None:intergenic | 25.0% |
| !!! | CTTGTTTAAGGATTTAGTTT+TGG | + | chr5_4:27388998-27389017 | Msa0846730:intron | 25.0% |
| ! | TAGTTGAGTTTGATGAAAAT+AGG | + | chr5_4:27389204-27389223 | Msa0846730:intron | 25.0% |
| !! | AAGGAAATATTTTGTACACT+TGG | - | chr5_4:27389493-27389512 | None:intergenic | 25.0% |
| ! | ACAGATTATTAGCTAATGAA+AGG | + | chr5_4:27389769-27389788 | Msa0846730:intron | 25.0% |
| ! | AAGGATAAACAAGAATCATT+TGG | + | chr5_4:27389788-27389807 | Msa0846730:intron | 25.0% |
| ! | TGCTTATACAACATAGATTT+GGG | + | chr5_4:27390067-27390086 | Msa0846730:intron | 25.0% |
| ! | ATCATGTTTATAGTAACTGT+TGG | + | chr5_4:27390198-27390217 | Msa0846730:intron | 25.0% |
| !! | TAAAATTGTTTGACCTCTTT+TGG | - | chr5_4:27390373-27390392 | None:intergenic | 25.0% |
| !!! | AAAAAGCTGCTTTACATTTT+GGG | - | chr5_4:27390508-27390527 | None:intergenic | 25.0% |
| !!! | TAAAAAGCTGCTTTACATTT+TGG | - | chr5_4:27390509-27390528 | None:intergenic | 25.0% |
| ! | TTAGAGAACATATATTTGCT+AGG | - | chr5_4:27390564-27390583 | None:intergenic | 25.0% |
| ! | TCTTTATCTTCAAGACATAA+TGG | + | chr5_4:27390609-27390628 | Msa0846730:intron | 25.0% |
| ! | AAACAACATGGAATAAAGAT+GGG | - | chr5_4:27390651-27390670 | None:intergenic | 25.0% |
| ! | AAAACAACATGGAATAAAGA+TGG | - | chr5_4:27390652-27390671 | None:intergenic | 25.0% |
| ! | AATTCTTCACCATAGATATA+TGG | + | chr5_4:27390699-27390718 | Msa0846730:intron | 25.0% |
| ! | GGTTAAATATACTTTGCATA+TGG | - | chr5_4:27390829-27390848 | None:intergenic | 25.0% |
| !! | ATTTAAAATAGAAGAAGCCT+TGG | - | chr5_4:27390912-27390931 | None:intergenic | 25.0% |
| !! | AAGATGCTCATAATTTTCAT+CGG | + | chr5_4:27386921-27386940 | Msa0846730:intron | 25.0% |
| !! | TTTACAGGAACAATTTTGTT+AGG | + | chr5_4:27391247-27391266 | Msa0846730:intron | 25.0% |
| !! | TTACAGGAACAATTTTGTTA+GGG | + | chr5_4:27391248-27391267 | Msa0846730:intron | 25.0% |
| ! | TTAGGGAGATAAAAAATGAA+TGG | + | chr5_4:27391265-27391284 | Msa0846730:CDS | 25.0% |
| ! | TAGGGAGATAAAAAATGAAT+GGG | + | chr5_4:27391266-27391285 | Msa0846730:CDS | 25.0% |
| ! | TATAATCTGAATGTAATGCT+CGG | - | chr5_4:27391420-27391439 | None:intergenic | 25.0% |
| !!! | TTATTTTGAATTTTCCCCAA+AGG | - | chr5_4:27391889-27391908 | None:intergenic | 25.0% |
| ! | TATGTAAAACTAGTTGCAAA+CGG | + | chr5_4:27391916-27391935 | Msa0846730:CDS | 25.0% |
| AGAATTTATGGAGTCAAATG+AGG | + | chr5_4:27386400-27386419 | Msa0846730:CDS | 30.0% | |
| TTTCTTTCCACACATCTTAT+TGG | + | chr5_4:27386438-27386457 | Msa0846730:intron | 30.0% | |
| !! | TTCTCTATCGTATTGGTTAT+TGG | - | chr5_4:27386680-27386699 | None:intergenic | 30.0% |
| TGATTATGAAGTTTGGATGA+TGG | - | chr5_4:27386706-27386725 | None:intergenic | 30.0% | |
| CCTTAAAATAAAATGGTGTG+AGG | - | chr5_4:27386748-27386767 | None:intergenic | 30.0% | |
| !!! | CCTCACACCATTTTATTTTA+AGG | + | chr5_4:27386745-27386764 | Msa0846730:intron | 30.0% |
| ! | TTTAAGGGTCTTGATTTTAC+AGG | + | chr5_4:27386761-27386780 | Msa0846730:intron | 30.0% |
| TGATATAGCTATCATTGATC+GGG | - | chr5_4:27386817-27386836 | None:intergenic | 30.0% | |
| ! | AAAGATTGGGTTTTCTGTAT+AGG | - | chr5_4:27387042-27387061 | None:intergenic | 30.0% |
| AATGAGAGAAATGAAGGTAA+GGG | - | chr5_4:27387092-27387111 | None:intergenic | 30.0% | |
| ACTAACAATGAGAGAAATGA+AGG | - | chr5_4:27387098-27387117 | None:intergenic | 30.0% | |
| TATTTCAATCACTCTCCAAT+GGG | - | chr5_4:27387153-27387172 | None:intergenic | 30.0% | |
| TTATTTCAATCACTCTCCAA+TGG | - | chr5_4:27387154-27387173 | None:intergenic | 30.0% | |
| GGATAATGCATAATATATGC+AGG | + | chr5_4:27387290-27387309 | Msa0846730:intron | 30.0% | |
| ! | CATAATATATGCAGGGTTTT+TGG | + | chr5_4:27387298-27387317 | Msa0846730:intron | 30.0% |
| !!! | TTATTTTTTGGTGGTGTCTA+GGG | - | chr5_4:27387330-27387349 | None:intergenic | 30.0% |
| !!! | TTTATTTTTTGGTGGTGTCT+AGG | - | chr5_4:27387331-27387350 | None:intergenic | 30.0% |
| AGACACCACCAAAAAATAAA+AGG | + | chr5_4:27387331-27387350 | Msa0846730:intron | 30.0% | |
| !! | NNNNNNCTTGCTTTTGAGCT+TGG | - | chr5_4:27387632-27387651 | None:intergenic | 30.0% |
| ATTTAGATCTAAAGATGACC+AGG | + | chr5_4:27387918-27387937 | Msa0846730:CDS | 30.0% | |
| TTTAGATCTAAAGATGACCA+GGG | + | chr5_4:27387919-27387938 | Msa0846730:CDS | 30.0% | |
| ! | TTTCTTTTCTTCTACAACTG+AGG | - | chr5_4:27387962-27387981 | None:intergenic | 30.0% |
| AGTTGTAGAAGAAAAGAAAC+CGG | + | chr5_4:27387963-27387982 | Msa0846730:CDS | 30.0% | |
| !! | ATCTCTGAAGTCTTCATAAT+TGG | - | chr5_4:27388099-27388118 | None:intergenic | 30.0% |
| ! | TGAAAATGTTGATAGATTCC+TGG | + | chr5_4:27388351-27388370 | Msa0846730:CDS | 30.0% |
| ! | GAAAATGTTGATAGATTCCT+GGG | + | chr5_4:27388352-27388371 | Msa0846730:CDS | 30.0% |
| ATAAAAGAAACTAGAAAGGC+CGG | + | chr5_4:27388537-27388556 | Msa0846730:intron | 30.0% | |
| AATTGCAGAGTGAAATTGAA+CGG | + | chr5_4:27388610-27388629 | Msa0846730:intron | 30.0% | |
| TATGTAAATCTAGTTGCAGA+CGG | + | chr5_4:27388675-27388694 | Msa0846730:CDS | 30.0% | |
| !!! | CTTGTAGCTCTTCATTTTTT+CGG | - | chr5_4:27388725-27388744 | None:intergenic | 30.0% |
| !! | AGTTTAGCTTTCCTTGTTTA+AGG | + | chr5_4:27388986-27389005 | Msa0846730:intron | 30.0% |
| !! | TTTGGTTAATTTGCCATTTC+CGG | - | chr5_4:27389053-27389072 | None:intergenic | 30.0% |
| ATTTACCACTCTCAAAACTA+GGG | - | chr5_4:27389140-27389159 | None:intergenic | 30.0% | |
| AATTTACCACTCTCAAAACT+AGG | - | chr5_4:27389141-27389160 | None:intergenic | 30.0% | |
| !!! | AGTTTTGAGAGTGGTAAATT+CGG | + | chr5_4:27389141-27389160 | Msa0846730:intron | 30.0% |
| GTGGACGTTTAATGTTAAAT+TGG | - | chr5_4:27389172-27389191 | None:intergenic | 30.0% | |
| GTTATGAACATCTGTCTTAA+AGG | + | chr5_4:27389293-27389312 | Msa0846730:intron | 30.0% | |
| TTGACAAAAAAAAAGGCAAG+AGG | + | chr5_4:27389536-27389555 | Msa0846730:intron | 30.0% | |
| AAAAAAAAAGGCAAGAGGAT+AGG | + | chr5_4:27389541-27389560 | Msa0846730:intron | 30.0% | |
| TTTATATATCCACATAGCGA+TGG | - | chr5_4:27389865-27389884 | None:intergenic | 30.0% | |
| GTGCTTATACAACATAGATT+TGG | + | chr5_4:27390066-27390085 | Msa0846730:intron | 30.0% | |
| !! | AACATAGATTTGGGATGTTT+TGG | + | chr5_4:27390076-27390095 | Msa0846730:intron | 30.0% |
| TGTAATTAAAGCAGCTTGAT+TGG | + | chr5_4:27390240-27390259 | Msa0846730:intron | 30.0% | |
| GTAATTAAAGCAGCTTGATT+GGG | + | chr5_4:27390241-27390260 | Msa0846730:intron | 30.0% | |
| !! | TTATGAGTTTTGTCCAAAAG+AGG | + | chr5_4:27390357-27390376 | Msa0846730:intron | 30.0% |
| ! | CTTCAAGACATAATGGAAAA+AGG | + | chr5_4:27390616-27390635 | Msa0846730:intron | 30.0% |
| AGTGTTAAGTCAAAACAACA+TGG | - | chr5_4:27390663-27390682 | None:intergenic | 30.0% | |
| TATACTTTGCATATGGTAAC+TGG | - | chr5_4:27390822-27390841 | None:intergenic | 30.0% | |
| TTGGAAAGTTAACGTTGTTT+GGG | - | chr5_4:27390893-27390912 | None:intergenic | 30.0% | |
| CATTTAATCCTTCTTTAAGC+AGG | + | chr5_4:27391586-27391605 | Msa0846730:intron | 30.0% | |
| !!! | ACATGATCTGATTTTAGCTA+AGG | - | chr5_4:27391625-27391644 | None:intergenic | 30.0% |
| CTAAAATCAGATCATGTTCT+AGG | + | chr5_4:27391628-27391647 | Msa0846730:intron | 30.0% | |
| TCTAGTATGAACAATAAGTC+TGG | + | chr5_4:27391739-27391758 | Msa0846730:intron | 30.0% | |
| AAAAAAAAAACTAGAGAGGC+CGG | + | chr5_4:27391768-27391787 | Msa0846730:intron | 30.0% | |
| AATTGCAGAGTGAAATTGAT+CGG | + | chr5_4:27391950-27391969 | Msa0846730:CDS | 30.0% | |
| TATGTGAATCTAGTTGCAAA+AGG | + | chr5_4:27392015-27392034 | Msa0846730:CDS | 30.0% | |
| AACCCTAGCTAATAGTAGAA+TGG | + | chr5_4:27386377-27386396 | Msa0846730:exon | 35.0% | |
| CTCCATTCTACTATTAGCTA+GGG | - | chr5_4:27386382-27386401 | None:intergenic | 35.0% | |
| TCTCCATTCTACTATTAGCT+AGG | - | chr5_4:27386383-27386402 | None:intergenic | 35.0% | |
| ! | TCAAATGAGGTTAGTTGTTC+TGG | + | chr5_4:27386413-27386432 | Msa0846730:intron | 35.0% |
| TTTCCACACATCTTATTGGA+TGG | + | chr5_4:27386442-27386461 | Msa0846730:intron | 35.0% | |
| TTACCATCCAATAAGATGTG+TGG | - | chr5_4:27386448-27386467 | None:intergenic | 35.0% | |
| !!! | AAAAGCTAGTTTTTCAAGGC+TGG | + | chr5_4:27386550-27386569 | Msa0846730:intron | 35.0% |
| ATGGAGATTCTCTATCGTAT+TGG | - | chr5_4:27386687-27386706 | None:intergenic | 35.0% | |
| ATATAGCTATCATTGATCGG+GGG | - | chr5_4:27386815-27386834 | None:intergenic | 35.0% | |
| GATATAGCTATCATTGATCG+GGG | - | chr5_4:27386816-27386835 | None:intergenic | 35.0% | |
| TTTGTTAGGGTACAACTTAC+CGG | + | chr5_4:27386967-27386986 | Msa0846730:intron | 35.0% | |
| CAGAAAACCCAATCTTTCAA+AGG | + | chr5_4:27387045-27387064 | Msa0846730:CDS | 35.0% | |
| ATGAGAGAAATGAAGGTAAG+GGG | - | chr5_4:27387091-27387110 | None:intergenic | 35.0% | |
| CAATGAGAGAAATGAAGGTA+AGG | - | chr5_4:27387093-27387112 | None:intergenic | 35.0% | |
| CATCTTATTATGTACCCCAT+TGG | + | chr5_4:27387135-27387154 | Msa0846730:intron | 35.0% | |
| ATTTCAATCACTCTCCAATG+GGG | - | chr5_4:27387152-27387171 | None:intergenic | 35.0% | |
| TTCTTCTTCTCTGTTGAACA+TGG | - | chr5_4:27387451-27387470 | None:intergenic | 35.0% | |
| ATGTTCAACAGAGAAGAAGA+AGG | + | chr5_4:27387450-27387469 | Msa0846730:intron | 35.0% | |
| TGTTCAACAGAGAAGAAGAA+GGG | + | chr5_4:27387451-27387470 | Msa0846730:intron | 35.0% | |
| ! | AAACAGCTTTCAGGTAAAAC+AGG | + | chr5_4:27387490-27387509 | Msa0846730:CDS | 35.0% |
| TTTCTATGTGGTCGTAATCA+TGG | - | chr5_4:27387516-27387535 | None:intergenic | 35.0% | |
| TGATTACGACCACATAGAAA+TGG | + | chr5_4:27387516-27387535 | Msa0846730:CDS | 35.0% | |
| ACTTTGTCTGCATCATGTTT+AGG | + | chr5_4:27387892-27387911 | Msa0846730:intron | 35.0% | |
| AGAAGAAAAGAAACCGGAAA+AGG | + | chr5_4:27387969-27387988 | Msa0846730:CDS | 35.0% | |
| !! | GTTGCAGTCTTTTTCATTGT+TGG | - | chr5_4:27388009-27388028 | None:intergenic | 35.0% |
| AAAAAGACTGCAACTTTCAC+TGG | + | chr5_4:27388015-27388034 | Msa0846730:CDS | 35.0% | |
| ! | TCTGAAGTCTTCATAATTGG+TGG | - | chr5_4:27388096-27388115 | None:intergenic | 35.0% |
| ACTACAACAGGATCAAACAA+TGG | + | chr5_4:27388138-27388157 | Msa0846730:CDS | 35.0% | |
| CTACAACAGGATCAAACAAT+GGG | + | chr5_4:27388139-27388158 | Msa0846730:CDS | 35.0% | |
| TACAACAGGATCAAACAATG+GGG | + | chr5_4:27388140-27388159 | Msa0846730:CDS | 35.0% | |
| AACTCGACAAGATCAAACAA+AGG | + | chr5_4:27388193-27388212 | Msa0846730:CDS | 35.0% | |
| !! | CAAGATCAAACAAAGGTACT+TGG | + | chr5_4:27388200-27388219 | Msa0846730:intron | 35.0% |
| CTGAATGTAATGCTTGATTC+AGG | - | chr5_4:27388292-27388311 | None:intergenic | 35.0% | |
| TCTCTCAGACACTCTTTATT+AGG | + | chr5_4:27388425-27388444 | Msa0846730:intron | 35.0% | |
| TCCTTATTAGCTGTCTAGTA+TGG | + | chr5_4:27388497-27388516 | Msa0846730:intron | 35.0% | |
| TCCATACTAGACAGCTAATA+AGG | - | chr5_4:27388501-27388520 | None:intergenic | 35.0% | |
| TAAAAGAAACTAGAAAGGCC+GGG | + | chr5_4:27388538-27388557 | Msa0846730:intron | 35.0% | |
| AATGAAGAGCTACAAGCAAA+AGG | + | chr5_4:27388729-27388748 | Msa0846730:CDS | 35.0% | |
| ATGAAGAGCTACAAGCAAAA+GGG | + | chr5_4:27388730-27388749 | Msa0846730:CDS | 35.0% | |
| TCACTAATTGCCAAACATCA+AGG | + | chr5_4:27388812-27388831 | Msa0846730:intron | 35.0% | |
| ! | CAACTGTCAACTTCATTTTC+CGG | + | chr5_4:27389031-27389050 | Msa0846730:intron | 35.0% |
| ! | TCAACTTCATTTTCCGGAAA+TGG | + | chr5_4:27389037-27389056 | Msa0846730:intron | 35.0% |
| ! | GATCAATTTTGTGTCAGATC+AGG | + | chr5_4:27389093-27389112 | Msa0846730:intron | 35.0% |
| CTCTCAAAACTAGGGTTAAT+AGG | - | chr5_4:27389132-27389151 | None:intergenic | 35.0% | |
| !!! | ATTAACCCTAGTTTTGAGAG+TGG | + | chr5_4:27389132-27389151 | Msa0846730:intron | 35.0% |
| !!! | GTTTTGAGAGTGGTAAATTC+GGG | + | chr5_4:27389142-27389161 | Msa0846730:intron | 35.0% |
| TTTAGGTCAAATACCGTTTG+CGG | - | chr5_4:27389320-27389339 | None:intergenic | 35.0% | |
| CAAGAGGATAGGAATGAAAT+TGG | + | chr5_4:27389552-27389571 | Msa0846730:intron | 35.0% | |
| !!! | GTGCGATGCATTTTTTTAGA+TGG | + | chr5_4:27389574-27389593 | Msa0846730:intron | 35.0% |
| AACCTAATACAGCAAATGAG+CGG | + | chr5_4:27389621-27389640 | Msa0846730:intron | 35.0% | |
| ATCATTTCGACCAACTTATG+TGG | + | chr5_4:27389886-27389905 | Msa0846730:intron | 35.0% | |
| AAAGAAACTGCCACATAAGT+TGG | - | chr5_4:27389899-27389918 | None:intergenic | 35.0% | |
| TAGACTTATAGTGCAAGCAA+AGG | + | chr5_4:27389957-27389976 | Msa0846730:intron | 35.0% | |
| ! | GGAGATTTTACCAAAAGAGT+TGG | + | chr5_4:27390035-27390054 | Msa0846730:intron | 35.0% |
| ! | ACTACAAAGACCAACTCTTT+TGG | - | chr5_4:27390048-27390067 | None:intergenic | 35.0% |
| !! | TAGATTTGGGATGTTTTGGA+AGG | + | chr5_4:27390080-27390099 | Msa0846730:intron | 35.0% |
| ACAACAGAACTAATTAACCG+TGG | - | chr5_4:27390424-27390443 | None:intergenic | 35.0% | |
| ! | CAAGACATAATGGAAAAAGG+TGG | + | chr5_4:27390619-27390638 | Msa0846730:intron | 35.0% |
| ! | AGATGGTATTCTTTTCTTCG+TGG | - | chr5_4:27390772-27390791 | None:intergenic | 35.0% |
| GAATACCATCTTTCTCCAAA+AGG | + | chr5_4:27390781-27390800 | Msa0846730:intron | 35.0% | |
| TTTGCATATGGTAACTGGTT+TGG | - | chr5_4:27390817-27390836 | None:intergenic | 35.0% | |
| ! | TGTTTGGGTTCGTTATTTGT+GGG | - | chr5_4:27390878-27390897 | None:intergenic | 35.0% |
| ! | TTGTTTGGGTTCGTTATTTG+TGG | - | chr5_4:27390879-27390898 | None:intergenic | 35.0% |
| CTTGGAAAGTTAACGTTGTT+TGG | - | chr5_4:27390894-27390913 | None:intergenic | 35.0% | |
| CAAACAACGTTAACTTTCCA+AGG | + | chr5_4:27390892-27390911 | Msa0846730:intron | 35.0% | |
| GAGGATTTATGGAGTCAAAT+GGG | + | chr5_4:27391008-27391027 | Msa0846730:intron | 35.0% | |
| AGGATTTATGGAGTCAAATG+GGG | + | chr5_4:27391009-27391028 | Msa0846730:intron | 35.0% | |
| !! | CATCGGTTTACAAACTTTAC+AGG | + | chr5_4:27391232-27391251 | Msa0846730:intron | 35.0% |
| !! | AAACAAAGGTACTTGGAAGA+AGG | + | chr5_4:27388207-27388226 | Msa0846730:intron | 35.0% |
| ! | TCTCTCAGACACTCTTTTTA+AGG | + | chr5_4:27391547-27391566 | Msa0846730:intron | 35.0% |
| TTTCATGACCTGCTTAAAGA+AGG | - | chr5_4:27391597-27391616 | None:intergenic | 35.0% | |
| AAAAAAAAACTAGAGAGGCC+GGG | + | chr5_4:27391769-27391788 | Msa0846730:intron | 35.0% | |
| TGAAGAAAGGTTGAAACCTT+TGG | + | chr5_4:27391870-27391889 | Msa0846730:CDS | 35.0% | |
| GAAGAAAGGTTGAAACCTTT+GGG | + | chr5_4:27391871-27391890 | Msa0846730:CDS | 35.0% | |
| AAGAAAGGTTGAAACCTTTG+GGG | + | chr5_4:27391872-27391891 | Msa0846730:CDS | 35.0% | |
| GCAAGTACAATTTCAACAAC+AGG | + | chr5_4:27392096-27392115 | Msa0846730:CDS | 35.0% | |
| !!! | TTAGCTAGGGTTTTGTTCTC+AGG | - | chr5_4:27386369-27386388 | None:intergenic | 40.0% |
| TCTTGTTGCCACCATTAACA+TGG | - | chr5_4:27386526-27386545 | None:intergenic | 40.0% | |
| CGGTATCGTTGATCAAACAT+GGG | - | chr5_4:27386617-27386636 | None:intergenic | 40.0% | |
| CCATGTTTGATCAACGATAC+CGG | + | chr5_4:27386615-27386634 | Msa0846730:intron | 40.0% | |
| ! | GATTTTCAATGGAGAGAGTC+CGG | - | chr5_4:27386637-27386656 | None:intergenic | 40.0% |
| ! | AGGTATTTTCCGATCTCTTG+TGG | - | chr5_4:27387022-27387041 | None:intergenic | 40.0% |
| TAGCAACTGAGCTAAGTTCA+CGG | - | chr5_4:27387269-27387288 | None:intergenic | 40.0% | |
| TGAACTTAGCTCAGTTGCTA+AGG | + | chr5_4:27387269-27387288 | Msa0846730:intron | 40.0% | |
| !!! | GCTGTTTTTGCAACCAATTC+TGG | - | chr5_4:27387477-27387496 | None:intergenic | 40.0% |
| TGGTTGCAAAAACAGCTTTC+AGG | + | chr5_4:27387481-27387500 | Msa0846730:CDS | 40.0% | |
| TAGTGCATCCAAGCGATTAT+CGG | + | chr5_4:27387781-27387800 | Msa0846730:intron | 40.0% | |
| ATCTTTACCCGATAATCGCT+TGG | - | chr5_4:27387792-27387811 | None:intergenic | 40.0% | |
| !! | GTCTTTTTCATTGTTGGCGT+AGG | - | chr5_4:27388003-27388022 | None:intergenic | 40.0% |
| GAAGTCTTCATAATTGGTGG+TGG | - | chr5_4:27388093-27388112 | None:intergenic | 40.0% | |
| GTAATGCTTGATTCAGGAGA+TGG | - | chr5_4:27388286-27388305 | None:intergenic | 40.0% | |
| ! | CATACTTTTCTTGTCTTCCC+AGG | - | chr5_4:27388372-27388391 | None:intergenic | 40.0% |
| !! | TTGCTTCATTAGCTTGCGTT+TGG | - | chr5_4:27388399-27388418 | None:intergenic | 40.0% |
| AGAGTGAAATTGAACGGAGA+AGG | + | chr5_4:27388616-27388635 | Msa0846730:intron | 40.0% | |
| ACGGAGAAGGTTAAAAGCTT+TGG | + | chr5_4:27388629-27388648 | Msa0846730:CDS | 40.0% | |
| CTCTCAAACTCCTTGATGTT+TGG | - | chr5_4:27388825-27388844 | None:intergenic | 40.0% | |
| CAAACATCAAGGAGTTTGAG+AGG | + | chr5_4:27388823-27388842 | Msa0846730:intron | 40.0% | |
| ACCTAATACAGCAAATGAGC+GGG | + | chr5_4:27389622-27389641 | Msa0846730:intron | 40.0% | |
| CAAATGAGCGGGAAAACAAT+AGG | + | chr5_4:27389633-27389652 | Msa0846730:intron | 40.0% | |
| TGGCAGTTTCTTTCTTCTCT+GGG | + | chr5_4:27389906-27389925 | Msa0846730:intron | 40.0% | |
| AAGCAAAGGTAGTAGTGAGT+CGG | + | chr5_4:27389971-27389990 | Msa0846730:intron | 40.0% | |
| !!! | TGTTTTGGAAGGTTTGAAGC+TGG | + | chr5_4:27390091-27390110 | Msa0846730:intron | 40.0% |
| ! | TTATAGCGTTGAGTTGTGTG+TGG | + | chr5_4:27390130-27390149 | Msa0846730:intron | 40.0% |
| TGTCGATGCAATAGCGAAAA+TGG | + | chr5_4:27390304-27390323 | Msa0846730:intron | 40.0% | |
| TGATTGACGTTACTACTCCA+CGG | + | chr5_4:27390404-27390423 | Msa0846730:intron | 40.0% | |
| !! | TTGTGCCTTTTGGAGAAAGA+TGG | - | chr5_4:27390789-27390808 | None:intergenic | 40.0% |
| ! | TTTGGATCTCTTGTGCCTTT+TGG | - | chr5_4:27390799-27390818 | None:intergenic | 40.0% |
| CATTTGGAGGATAACAAGCA+AGG | - | chr5_4:27390850-27390869 | None:intergenic | 40.0% | |
| !! | GCTTGTTATCCTCCAAATGA+TGG | + | chr5_4:27390851-27390870 | Msa0846730:intron | 40.0% |
| TTATTTGTGGGGCCATCATT+TGG | - | chr5_4:27390866-27390885 | None:intergenic | 40.0% | |
| ! | GTTTGGGTTCGTTATTTGTG+GGG | - | chr5_4:27390877-27390896 | None:intergenic | 40.0% |
| CATAAATCCTCCATTCTTCC+GGG | - | chr5_4:27390999-27391018 | None:intergenic | 40.0% | |
| CCATAAATCCTCCATTCTTC+CGG | - | chr5_4:27391000-27391019 | None:intergenic | 40.0% | |
| GGAGGATTTATGGAGTCAAA+TGG | + | chr5_4:27391007-27391026 | Msa0846730:intron | 40.0% | |
| !!! | CTCCCACTACATTTTTTACC+CGG | - | chr5_4:27391790-27391809 | None:intergenic | 40.0% |
| TGCAGAGTGAACTTGAAGAA+AGG | + | chr5_4:27391857-27391876 | Msa0846730:intron | 40.0% | |
| AGAGCTACAAGCAAAAGAGA+AGG | + | chr5_4:27392074-27392093 | Msa0846730:CDS | 40.0% | |
| TCGCTAATTGCGAAACATCA+AGG | + | chr5_4:27392152-27392171 | Msa0846730:three_prime_UTR | 40.0% | |
| CAACAAGCTAGGTATGTGTC+TGG | - | chr5_4:27386491-27386510 | None:intergenic | 45.0% | |
| CCGGTATCGTTGATCAAACA+TGG | - | chr5_4:27386618-27386637 | None:intergenic | 45.0% | |
| AGGACCATATTGTCCCTGAA+GGG | + | chr5_4:27386781-27386800 | Msa0846730:intron | 45.0% | |
| CTATCATTGATCGGGGGAAA+GGG | - | chr5_4:27386809-27386828 | None:intergenic | 45.0% | |
| TAGGGTACAACTTACCGGTA+CGG | + | chr5_4:27386972-27386991 | Msa0846730:intron | 45.0% | |
| GAGGAGAACAAAGCTGATCT+TGG | + | chr5_4:27386994-27387013 | Msa0846730:CDS | 45.0% | |
| !! | ATCTTGGTGCCACAAGAGAT+CGG | + | chr5_4:27387010-27387029 | Msa0846730:CDS | 45.0% |
| AGAAGAAGAAGGGCCAGAAT+TGG | + | chr5_4:27387461-27387480 | Msa0846730:CDS | 45.0% | |
| CAGCATGCACCATTTCTATG+TGG | - | chr5_4:27387528-27387547 | None:intergenic | 45.0% | |
| CTTGGATGCACTACTGAGAA+GGG | - | chr5_4:27387774-27387793 | None:intergenic | 45.0% | |
| AGTGCATCCAAGCGATTATC+GGG | + | chr5_4:27387782-27387801 | Msa0846730:intron | 45.0% | |
| TAAAGATGACCAGGGTGACA+AGG | + | chr5_4:27387927-27387946 | Msa0846730:CDS | 45.0% | |
| ! | GTAGGAGTAATGGCCTTTTC+CGG | - | chr5_4:27387985-27388004 | None:intergenic | 45.0% |
| CATTGTTGGCGTAGGAGTAA+TGG | - | chr5_4:27387995-27388014 | None:intergenic | 45.0% | |
| !! | GTCTTCATAATTGGTGGTGG+CGG | - | chr5_4:27388090-27388109 | None:intergenic | 45.0% |
| GTAGTCTGTCTTAGAGGATC+AGG | - | chr5_4:27388123-27388142 | None:intergenic | 45.0% | |
| CCTGTTGTAGTCTGTCTTAG+AGG | - | chr5_4:27388129-27388148 | None:intergenic | 45.0% | |
| !! | CCTCTAAGACAGACTACAAC+AGG | + | chr5_4:27388126-27388145 | Msa0846730:CDS | 45.0% |
| GGAGACAGATGCAGATGAAT+GGG | + | chr5_4:27388161-27388180 | Msa0846730:CDS | 45.0% | |
| ACGCAAGCTAATGAAGCAAG+AGG | + | chr5_4:27388400-27388419 | Msa0846730:CDS | 45.0% | |
| AGGCCGGGTAAAAAATGTTG+TGG | + | chr5_4:27388553-27388572 | Msa0846730:intron | 45.0% | |
| GGCCGGGTAAAAAATGTTGT+GGG | + | chr5_4:27388554-27388573 | Msa0846730:intron | 45.0% | |
| !!! | CGCCCACAACATTTTTTACC+CGG | - | chr5_4:27388559-27388578 | None:intergenic | 45.0% |
| AGAGCTACAAGCAAAAGGGA+AGG | + | chr5_4:27388734-27388753 | Msa0846730:CDS | 45.0% | |
| CAGAAGCAGAAATACATCCG+TGG | - | chr5_4:27388789-27388808 | None:intergenic | 45.0% | |
| CTGTCTTAAAGGACCGCAAA+CGG | + | chr5_4:27389304-27389323 | Msa0846730:intron | 45.0% | |
| !! | TCCCGCTCATTTGCTGTATT+AGG | - | chr5_4:27389626-27389645 | None:intergenic | 45.0% |
| GTGGCAGTTTCTTTCTTCTC+TGG | + | chr5_4:27389905-27389924 | Msa0846730:intron | 45.0% | |
| GGCAGTTTCTTTCTTCTCTG+GGG | + | chr5_4:27389907-27389926 | Msa0846730:intron | 45.0% | |
| AGCAAAGGTAGTAGTGAGTC+GGG | + | chr5_4:27389972-27389991 | Msa0846730:intron | 45.0% | |
| AGTAGTGAGTCGGGATGTAA+TGG | + | chr5_4:27389981-27390000 | Msa0846730:intron | 45.0% | |
| !! | GGATGTAATGGAGTTTTCCG+TGG | + | chr5_4:27389993-27390012 | Msa0846730:intron | 45.0% |
| !! | GGAGTTTTCCGTGGTAATGA+AGG | + | chr5_4:27390002-27390021 | Msa0846730:intron | 45.0% |
| ACCACTCTCCTTCATTACCA+CGG | - | chr5_4:27390013-27390032 | None:intergenic | 45.0% | |
| GGTAATGAAGGAGAGTGGTT+TGG | + | chr5_4:27390014-27390033 | Msa0846730:intron | 45.0% | |
| GCTATAAAAACAGCGCTCCT+TGG | - | chr5_4:27390117-27390136 | None:intergenic | 45.0% | |
| ACTGTTGGAGACTAGATGAG+AGG | + | chr5_4:27390213-27390232 | Msa0846730:intron | 45.0% | |
| CGACACAATTGTTCGCTTCA+TGG | - | chr5_4:27390289-27390308 | None:intergenic | 45.0% | |
| ACCAGAGAATAAAACCCACC+CGG | + | chr5_4:27390978-27390997 | Msa0846730:intron | 45.0% | |
| ATAAAACCCACCCGGAAGAA+TGG | + | chr5_4:27390986-27391005 | Msa0846730:intron | 45.0% | |
| CCGGAAGAATGGAGGATTTA+TGG | + | chr5_4:27390997-27391016 | Msa0846730:intron | 45.0% | |
| CATGATCAAACAATGCGCAC+AGG | + | chr5_4:27391305-27391324 | Msa0846730:CDS | 45.0% | |
| TCAAACAATGCGCACAGGAA+TGG | + | chr5_4:27391310-27391329 | Msa0846730:CDS | 45.0% | |
| CAAACAATGCGCACAGGAAT+GGG | + | chr5_4:27391311-27391330 | Msa0846730:CDS | 45.0% | |
| GGTATGAGAAGTCGAAAGAG+CGG | + | chr5_4:27391461-27391480 | Msa0846730:intron | 45.0% | |
| GAAAGAGCGGATAGATTCCT+GGG | + | chr5_4:27391474-27391493 | Msa0846730:CDS | 45.0% | |
| ATTCCTGGGTAGACAAGAAG+AGG | + | chr5_4:27391488-27391507 | Msa0846730:CDS | 45.0% | |
| AGGCCGGGTAAAAAATGTAG+TGG | + | chr5_4:27391784-27391803 | Msa0846730:intron | 45.0% | |
| GGCCGGGTAAAAAATGTAGT+GGG | + | chr5_4:27391785-27391804 | Msa0846730:intron | 45.0% | |
| CAGAAGCAGAAATACGTCTG+TGG | - | chr5_4:27392129-27392148 | None:intergenic | 45.0% | |
| !! | AAAAAATAAAAAAAATAGTT+AGG | + | chr5_4:27386856-27386875 | Msa0846730:intron | 5.0% |
| !! | AAAAATAAAAAAAATAGTTA+GGG | + | chr5_4:27386857-27386876 | Msa0846730:intron | 5.0% |
| CAGGACCATATTGTCCCTGA+AGG | + | chr5_4:27386780-27386799 | Msa0846730:intron | 50.0% | |
| GGTTCCCTTCAGGGACAATA+TGG | - | chr5_4:27386788-27386807 | None:intergenic | 50.0% | |
| GCTATCATTGATCGGGGGAA+AGG | - | chr5_4:27386810-27386829 | None:intergenic | 50.0% | |
| !! | AGCTTTGTTCTCCTCCGTAC+CGG | - | chr5_4:27386989-27387008 | None:intergenic | 50.0% |
| GCTTGGATGCACTACTGAGA+AGG | - | chr5_4:27387775-27387794 | None:intergenic | 50.0% | |
| !! | TTCATAATTGGTGGTGGCGG+TGG | - | chr5_4:27388087-27388106 | None:intergenic | 50.0% |
| GGGAGACAGATGCAGATGAA+TGG | + | chr5_4:27388160-27388179 | Msa0846730:CDS | 50.0% | |
| GAACAACGTGCAAACTGCCA+CGG | + | chr5_4:27388769-27388788 | Msa0846730:CDS | 50.0% | |
| CACATAGCGATGGCTATGCA+AGG | - | chr5_4:27389855-27389874 | None:intergenic | 50.0% | |
| CTTGCATAGCCATCGCTATG+TGG | + | chr5_4:27389853-27389872 | Msa0846730:intron | 50.0% | |
| ! | TCCGTGGTAATGAAGGAGAG+TGG | + | chr5_4:27390009-27390028 | Msa0846730:intron | 50.0% |
| TTTGTGGGGCCATCATTTGG+AGG | - | chr5_4:27390863-27390882 | None:intergenic | 50.0% | |
| !!! | TCCGGGTGGGTTTTATTCTC+TGG | - | chr5_4:27390982-27391001 | None:intergenic | 50.0% |
| AATCCTCCATTCTTCCGGGT+GGG | - | chr5_4:27390995-27391014 | None:intergenic | 50.0% | |
| AAATCCTCCATTCTTCCGGG+TGG | - | chr5_4:27390996-27391015 | None:intergenic | 50.0% | |
| CGAAAGAGCGGATAGATTCC+TGG | + | chr5_4:27391473-27391492 | Msa0846730:CDS | 50.0% | |
| CTTCCTCTTCTTGTCTACCC+AGG | - | chr5_4:27391494-27391513 | None:intergenic | 50.0% | |
| ! | TTCCTTCGCTAGCTTGCGTT+TGG | - | chr5_4:27391521-27391540 | None:intergenic | 50.0% |
| TGCAAAAGGAGCGAGAGACA+AGG | + | chr5_4:27392029-27392048 | Msa0846730:CDS | 50.0% | |
| GGTACAACTTACCGGTACGG+AGG | + | chr5_4:27386975-27386994 | Msa0846730:CDS | 55.0% | |
| TGAGCAGAAGAGTGAGACCC+CGG | + | chr5_4:27387594-27387613 | Msa0846730:intron | 55.0% | |
| ! | GCTTTTGAGCTTGGCCGATG+AGG | - | chr5_4:27387623-27387642 | None:intergenic | 55.0% |
| ATGTTGACGCCTTGTCACCC+TGG | - | chr5_4:27387939-27387958 | None:intergenic | 55.0% | |
| !! | ATAATTGGTGGTGGCGGTGG+CGG | - | chr5_4:27388084-27388103 | None:intergenic | 55.0% |
| ! | TTTTAACCCGTGCGACGCAC+GGG | - | chr5_4:27389415-27389434 | None:intergenic | 55.0% |
| ! | CTTTTAACCCGTGCGACGCA+CGG | - | chr5_4:27389416-27389435 | None:intergenic | 55.0% |
| ! | GGAAGGTTTGAAGCTGGCCA+AGG | + | chr5_4:27390097-27390116 | Msa0846730:intron | 55.0% |
| AAACCCACCCGGAAGAATGG+AGG | + | chr5_4:27390989-27391008 | Msa0846730:intron | 55.0% | |
| AGCCAAACGCAAGCTAGCGA+AGG | + | chr5_4:27391516-27391535 | Msa0846730:CDS | 55.0% | |
| ACGCAAGCTAGCGAAGGAAC+AGG | + | chr5_4:27391522-27391541 | Msa0846730:CDS | 55.0% | |
| GGGGGAAAGGGTTCCCTTCA+GGG | - | chr5_4:27386797-27386816 | None:intergenic | 60.0% | |
| !! | AGGAGGAGCATTTGGCGCTG+TGG | - | chr5_4:27388055-27388074 | None:intergenic | 60.0% |
| !! | TAATTGGTGGTGGCGGTGGC+GGG | - | chr5_4:27388083-27388102 | None:intergenic | 60.0% |
| TGCAGACGGCGCAAGAGCAA+AGG | + | chr5_4:27388689-27388708 | Msa0846730:CDS | 60.0% | |
| TACAAGACCCGTGCGTCGCA+CGG | + | chr5_4:27389405-27389424 | Msa0846730:intron | 60.0% | |
| !! | CTTCTCTGGGGTTGCAGCAG+TGG | + | chr5_4:27389919-27389938 | Msa0846730:intron | 60.0% |
| CGGGGGAAAGGGTTCCCTTC+AGG | - | chr5_4:27386798-27386817 | None:intergenic | 65.0% | |
| GCAGAAGAGTGAGACCCCGG+AGG | + | chr5_4:27387597-27387616 | Msa0846730:intron | 65.0% | |
| TGAGACCCCGGAGGCCTCAT+CGG | + | chr5_4:27387606-27387625 | Msa0846730:intron | 65.0% | |
| AGCTTGGCCGATGAGGCCTC+CGG | - | chr5_4:27387616-27387635 | None:intergenic | 65.0% | |
| !! | GGGGGTGGAGGAGGAGCATT+TGG | - | chr5_4:27388063-27388082 | None:intergenic | 65.0% |
| !! | AATTGGTGGTGGCGGTGGCG+GGG | - | chr5_4:27388082-27388101 | None:intergenic | 65.0% |
| CGGCGCAAGAGCAAAGGTCG+AGG | + | chr5_4:27388695-27388714 | Msa0846730:CDS | 65.0% | |
| ACAAGACCCGTGCGTCGCAC+GGG | + | chr5_4:27389406-27389425 | Msa0846730:intron | 65.0% | |
| CTTGGCCGATGAGGCCTCCG+GGG | - | chr5_4:27387614-27387633 | None:intergenic | 70.0% | |
| GCTTGGCCGATGAGGCCTCC+GGG | - | chr5_4:27387615-27387634 | None:intergenic | 70.0% | |
| !! | ATTGGTGGTGGCGGTGGCGG+GGG | - | chr5_4:27388081-27388100 | None:intergenic | 70.0% |
| !!! | GGCGGTGGCGGGGGTGGAGG+AGG | - | chr5_4:27388072-27388091 | None:intergenic | 85.0% |
| !!! | GGTGGCGGTGGCGGGGGTGG+AGG | - | chr5_4:27388075-27388094 | None:intergenic | 85.0% |
| !!! | GGTGGTGGCGGTGGCGGGGG+TGG | - | chr5_4:27388078-27388097 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 27386355 | 27392226 | 27386355 | ID=Msa0846730;Name=Msa0846730 |
| chr5_4 | mRNA | 27386355 | 27392226 | 27386355 | ID=Msa0846730-mRNA-1;Parent=Msa0846730;Name=Msa0846730-mRNA-1;_AED=0.16;_eAED=0.16;_QI=41|0.75|0.77|1|0.87|0.77|9|77|433 |
| chr5_4 | exon | 27386355 | 27386421 | 27386355 | ID=Msa0846730-mRNA-1:exon:10559;Parent=Msa0846730-mRNA-1 |
| chr5_4 | exon | 27386975 | 27387066 | 27386975 | ID=Msa0846730-mRNA-1:exon:10560;Parent=Msa0846730-mRNA-1 |
| chr5_4 | exon | 27387461 | 27387604 | 27387461 | ID=Msa0846730-mRNA-1:exon:10561;Parent=Msa0846730-mRNA-1 |
| chr5_4 | exon | 27387914 | 27388214 | 27387914 | ID=Msa0846730-mRNA-1:exon:10562;Parent=Msa0846730-mRNA-1 |
| chr5_4 | exon | 27388340 | 27388421 | 27388340 | ID=Msa0846730-mRNA-1:exon:10563;Parent=Msa0846730-mRNA-1 |
| chr5_4 | exon | 27388618 | 27388793 | 27388618 | ID=Msa0846730-mRNA-1:exon:10564;Parent=Msa0846730-mRNA-1 |
| chr5_4 | exon | 27391254 | 27391364 | 27391254 | ID=Msa0846730-mRNA-1:exon:10565;Parent=Msa0846730-mRNA-1 |
| chr5_4 | exon | 27391462 | 27391543 | 27391462 | ID=Msa0846730-mRNA-1:exon:10566;Parent=Msa0846730-mRNA-1 |
| chr5_4 | exon | 27391862 | 27392226 | 27391862 | ID=Msa0846730-mRNA-1:exon:10567;Parent=Msa0846730-mRNA-1 |
| chr5_4 | five_prime_UTR | 27386355 | 27386395 | 27386355 | ID=Msa0846730-mRNA-1:five_prime_utr;Parent=Msa0846730-mRNA-1 |
| chr5_4 | CDS | 27386396 | 27386421 | 27386396 | ID=Msa0846730-mRNA-1:cds;Parent=Msa0846730-mRNA-1 |
| chr5_4 | CDS | 27386975 | 27387066 | 27386975 | ID=Msa0846730-mRNA-1:cds;Parent=Msa0846730-mRNA-1 |
| chr5_4 | CDS | 27387461 | 27387604 | 27387461 | ID=Msa0846730-mRNA-1:cds;Parent=Msa0846730-mRNA-1 |
| chr5_4 | CDS | 27387914 | 27388214 | 27387914 | ID=Msa0846730-mRNA-1:cds;Parent=Msa0846730-mRNA-1 |
| chr5_4 | CDS | 27388340 | 27388421 | 27388340 | ID=Msa0846730-mRNA-1:cds;Parent=Msa0846730-mRNA-1 |
| chr5_4 | CDS | 27388618 | 27388793 | 27388618 | ID=Msa0846730-mRNA-1:cds;Parent=Msa0846730-mRNA-1 |
| chr5_4 | CDS | 27391254 | 27391364 | 27391254 | ID=Msa0846730-mRNA-1:cds;Parent=Msa0846730-mRNA-1 |
| chr5_4 | CDS | 27391462 | 27391543 | 27391462 | ID=Msa0846730-mRNA-1:cds;Parent=Msa0846730-mRNA-1 |
| chr5_4 | CDS | 27391862 | 27392149 | 27391862 | ID=Msa0846730-mRNA-1:cds;Parent=Msa0846730-mRNA-1 |
| chr5_4 | three_prime_UTR | 27392150 | 27392226 | 27392150 | ID=Msa0846730-mRNA-1:three_prime_utr;Parent=Msa0846730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
