Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579330 | XP_039689927.1 | 82.216 | 343 | 24 | 3 | 11 | 316 | 45 | 387 | 1.19e-167 | 481 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579330 | A0A396I8T9 | 82.216 | 343 | 24 | 3 | 11 | 316 | 45 | 387 | 5.67e-168 | 481 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043290 | Msa0579330 | 0.821598 | 3.708009e-53 | -8.615850e-47 |
| Msa0137210 | Msa0579330 | 0.810405 | 1.171487e-50 | -8.615850e-47 |
| Msa0194820 | Msa0579330 | 0.803921 | 2.767280e-49 | -8.615850e-47 |
| Msa0393150 | Msa0579330 | 0.816171 | 6.344346e-52 | -8.615850e-47 |
| Msa0393340 | Msa0579330 | 0.803821 | 2.902643e-49 | -8.615850e-47 |
| Msa0441290 | Msa0579330 | 0.826449 | 2.696697e-54 | -8.615850e-47 |
| Msa0471460 | Msa0579330 | 0.802816 | 4.688350e-49 | -8.615850e-47 |
| Msa0562620 | Msa0579330 | 0.829997 | 3.764009e-55 | -8.615850e-47 |
| Msa0579330 | Msa0616510 | 0.809835 | 1.554357e-50 | -8.615850e-47 |
| Msa0579330 | Msa0650660 | 0.954987 | 8.521023e-113 | -8.615850e-47 |
| Msa0579330 | Msa0650750 | 0.957748 | 1.281789e-115 | -8.615850e-47 |
| Msa0579330 | Msa0699840 | 0.834529 | 2.843676e-56 | -8.615850e-47 |
| Msa0579330 | Msa0740100 | 0.817943 | 2.537197e-52 | -8.615850e-47 |
| Msa0579330 | Msa0782760 | 0.816425 | 5.566118e-52 | -8.615850e-47 |
| Msa0579330 | Msa0820390 | 0.800876 | 1.173487e-48 | -8.615850e-47 |
| Msa0579330 | Msa0846730 | 0.800689 | 1.280790e-48 | -8.615850e-47 |
| Msa0579330 | Msa1184330 | 0.807394 | 5.164689e-50 | -8.615850e-47 |
| Msa0579330 | Msa1227940 | 0.814319 | 1.636589e-51 | -8.615850e-47 |
| Msa0579330 | Msa1341890 | 0.812432 | 4.251886e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579330 | MtrunA17_Chr4g0042991 | 82.216 | 343 | 24 | 3 | 11 | 316 | 45 | 387 | 1.09e-171 | 481 |
| Msa0579330 | MtrunA17_Chr5g0418651 | 45.367 | 313 | 128 | 9 | 7 | 316 | 40 | 312 | 3.40e-55 | 182 |
| Msa0579330 | MtrunA17_Chr3g0086051 | 39.815 | 108 | 64 | 1 | 209 | 316 | 154 | 260 | 1.12e-17 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0579330 | AT1G13920.4 | 50.943 | 106 | 52 | 0 | 211 | 316 | 273 | 378 | 8.71e-29 | 114 |
| Msa0579330 | AT1G13920.1 | 50.943 | 106 | 52 | 0 | 211 | 316 | 240 | 345 | 9.14e-29 | 113 |
| Msa0579330 | AT5G61280.2 | 28.571 | 189 | 125 | 3 | 130 | 316 | 57 | 237 | 1.39e-13 | 69.7 |
| Msa0579330 | AT1G69325.1 | 42.342 | 111 | 63 | 1 | 203 | 313 | 10 | 119 | 2.15e-13 | 66.2 |
| Msa0579330 | AT5G61280.1 | 28.571 | 189 | 125 | 3 | 130 | 316 | 80 | 260 | 2.76e-13 | 69.3 |
Find 62 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTTACCTGATAATCTTT+TGG | 0.246925 | 4_1:-84000553 | None:intergenic |
| ATAGGCTTTGCTTCTGGTCT+TGG | 0.265119 | 4_1:-84000493 | None:intergenic |
| TACATAAATATACTTATAAT+TGG | 0.302158 | 4_1:-84001999 | None:intergenic |
| GGTTGTGGTGGCGGCGGAGG+TGG | 0.327009 | 4_1:-84001159 | None:intergenic |
| TTTATCATAGGCTTTGCTTC+TGG | 0.328813 | 4_1:-84000499 | None:intergenic |
| TGTGGTGGCGGCGGAGGTGG+TGG | 0.339507 | 4_1:-84001156 | None:intergenic |
| GTTGCACCTGGTCTAGTTGA+TGG | 0.341217 | 4_1:-84001192 | None:intergenic |
| CGGATATCCTAACACCAAAA+AGG | 0.345474 | 4_1:+84001031 | Msa0579330:CDS |
| GCTGCATCCAAAAGATTATC+AGG | 0.351559 | 4_1:+84000546 | Msa0579330:CDS |
| GGCGGAGGTGGTGGCGGCTG+CGG | 0.379635 | 4_1:-84001147 | None:intergenic |
| TCTCTAATAGAAGATGTTGT+TGG | 0.380294 | 4_1:-84000907 | None:intergenic |
| TTTGGATGCAGCACCTATAT+GGG | 0.393760 | 4_1:-84000535 | None:intergenic |
| GGAGGTTGTGGTGGCGGCGG+AGG | 0.394059 | 4_1:-84001162 | None:intergenic |
| AATTTCTACAGAGAAGAAAA+AGG | 0.405869 | 4_1:+84000302 | Msa0579330:CDS |
| GCAAACATTATTAGAACAAC+AGG | 0.416708 | 4_1:+84001932 | Msa0579330:CDS |
| CAGAAGCAAAAGCAGATACT+TGG | 0.418811 | 4_1:+84001214 | Msa0579330:CDS |
| GTTCTTTCTTTCTTAGAAGC+AGG | 0.419523 | 4_1:-84001975 | None:intergenic |
| CTGACAGGAGGTTGTGGTGG+CGG | 0.433854 | 4_1:-84001168 | None:intergenic |
| TGTTAGAGACAATAGATTCA+TGG | 0.438542 | 4_1:+84001390 | Msa0579330:CDS |
| AGAACAACAGGAAAGCTTCC+AGG | 0.444025 | 4_1:+84001944 | Msa0579330:CDS |
| AAATCTTTACCACCAAAACT+TGG | 0.448320 | 4_1:-84001057 | None:intergenic |
| GCGGCCATGAGGACGTGGTT+GGG | 0.450451 | 4_1:-84001128 | None:intergenic |
| AAAGTGAAAATACACGGAAA+AGG | 0.455987 | 4_1:+84001792 | Msa0579330:CDS |
| ACAGGAGGTTGTGGTGGCGG+CGG | 0.464860 | 4_1:-84001165 | None:intergenic |
| GGTGGCGGCGGAGGTGGTGG+CGG | 0.466003 | 4_1:-84001153 | None:intergenic |
| TTTATGTACATAATGTCATT+CGG | 0.466944 | 4_1:+84002014 | Msa0579330:three_prime_UTR |
| TTCATTCTTTCGTCTCTCAT+CGG | 0.485034 | 4_1:-84001888 | None:intergenic |
| AAGTGAAAATACACGGAAAA+GGG | 0.489919 | 4_1:+84001793 | Msa0579330:CDS |
| TAGAAGCAGGAACAAGCCCC+TGG | 0.500961 | 4_1:-84001962 | None:intergenic |
| TGCGGCCATGAGGACGTGGT+TGG | 0.506565 | 4_1:-84001129 | None:intergenic |
| GTTAGAGACAATAGATTCAT+GGG | 0.510246 | 4_1:+84001391 | Msa0579330:CDS |
| GATGGTCTGACAGGAGGTTG+TGG | 0.513783 | 4_1:-84001174 | None:intergenic |
| GCTTCTGGTCTTGGCCAATG+AGG | 0.527010 | 4_1:-84000484 | None:intergenic |
| GGTCTAGTTGATGGTCTGAC+AGG | 0.535460 | 4_1:-84001183 | None:intergenic |
| AAAAGCAGATACTTGGGAAA+GGG | 0.535761 | 4_1:+84001221 | Msa0579330:CDS |
| GAACAACAGGAAAGCTTCCA+GGG | 0.544421 | 4_1:+84001945 | Msa0579330:CDS |
| GGAGTTGCCTGAGACCTCAT+TGG | 0.544976 | 4_1:+84000470 | Msa0579330:CDS |
| CGGCTGCGGCCATGAGGACG+TGG | 0.549078 | 4_1:-84001133 | None:intergenic |
| GTCTTGGCCAATGAGGTCTC+AGG | 0.549623 | 4_1:-84000477 | None:intergenic |
| CACGGAAAAGGGAGAAAGCA+TGG | 0.551213 | 4_1:+84001804 | Msa0579330:CDS |
| TTGTCCCAACCACGTCCTCA+TGG | 0.559642 | 4_1:+84001124 | Msa0579330:CDS |
| TTCCACATGAGCAGAAAATG+TGG | 0.560420 | 4_1:+84000448 | Msa0579330:CDS |
| AGAAGCAAAAGCAGATACTT+GGG | 0.563207 | 4_1:+84001215 | Msa0579330:CDS |
| TGATGATGCTGGTGCGAATG+AGG | 0.565873 | 4_1:-84000953 | None:intergenic |
| AACGCTGAAAGCAAAAGATA+AGG | 0.570182 | 4_1:+84001910 | Msa0579330:CDS |
| TGCTGCAGCAGCTACCGCTG+TGG | 0.578435 | 4_1:-84000397 | None:intergenic |
| CAAAAGCAGATACTTGGGAA+AGG | 0.582056 | 4_1:+84001220 | Msa0579330:CDS |
| TGCAGTGTACAAAATCCACT+TGG | 0.584272 | 4_1:+84002111 | Msa0579330:three_prime_UTR |
| CAATAGATTCATGGGAAAAG+CGG | 0.584674 | 4_1:+84001399 | Msa0579330:CDS |
| CACAGATGAACAAGGAAACA+AGG | 0.591861 | 4_1:+84000882 | Msa0579330:CDS |
| TGGTGGCGGCTGCGGCCATG+AGG | 0.604575 | 4_1:-84001139 | None:intergenic |
| TATATAGACGAGATTGCAGA+AGG | 0.610293 | 4_1:+84001851 | Msa0579330:CDS |
| TTTAAAATCACAGATGAACA+AGG | 0.610365 | 4_1:+84000874 | Msa0579330:CDS |
| GGTCTGACAGGAGGTTGTGG+TGG | 0.627760 | 4_1:-84001171 | None:intergenic |
| CTAGTTGATGGTCTGACAGG+AGG | 0.633454 | 4_1:-84001180 | None:intergenic |
| GTCAGACCATCAACTAGACC+AGG | 0.640427 | 4_1:+84001186 | Msa0579330:CDS |
| TGCAGCAAAGTGAAAATACA+CGG | 0.640916 | 4_1:+84001786 | Msa0579330:intron |
| TCCACATGAGCAGAAAATGT+GGG | 0.644028 | 4_1:+84000449 | Msa0579330:CDS |
| ACGCAAGCTAAACAAGCATG+AGG | 0.679702 | 4_1:+84001439 | Msa0579330:CDS |
| TGATGCTGGTGCGAATGAGG+TGG | 0.686427 | 4_1:-84000950 | None:intergenic |
| AACAACAGGAAAGCTTCCAG+GGG | 0.710912 | 4_1:+84001946 | Msa0579330:CDS |
| GGAAATGGAGCATGCCACAG+CGG | 0.741947 | 4_1:+84000383 | Msa0579330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACATAAATATACTTATAAT+TGG | - | chr4_1:84002002-84002021 | None:intergenic | 10.0% |
| !! | TACATAAATATACTTATAAT+TGG | - | chr4_1:84002002-84002021 | None:intergenic | 10.0% |
| !!! | AAATGAAGATTTTTTATCAT+AGG | - | chr4_1:84000514-84000533 | None:intergenic | 15.0% |
| !!! | AAATGAAGATTTTTTATCAT+AGG | - | chr4_1:84000514-84000533 | None:intergenic | 15.0% |
| !!! | TGATTATGATTTTATGGAAA+TGG | + | chr4_1:84000368-84000387 | Msa0579330:CDS | 20.0% |
| !!! | ATATTTACCTGATAATCTTT+TGG | - | chr4_1:84000556-84000575 | None:intergenic | 20.0% |
| !! | GAAAATATAATCAATTTGTC+AGG | + | chr4_1:84001357-84001376 | Msa0579330:intron | 20.0% |
| !! | AGTTTAATCAGCTTATAATT+AGG | - | chr4_1:84001588-84001607 | None:intergenic | 20.0% |
| !! | TTTATGTACATAATGTCATT+CGG | + | chr4_1:84002014-84002033 | Msa0579330:three_prime_UTR | 20.0% |
| !!! | TGATTATGATTTTATGGAAA+TGG | + | chr4_1:84000368-84000387 | Msa0579330:CDS | 20.0% |
| !!! | ATATTTACCTGATAATCTTT+TGG | - | chr4_1:84000556-84000575 | None:intergenic | 20.0% |
| !! | GAAAATATAATCAATTTGTC+AGG | + | chr4_1:84001357-84001376 | Msa0579330:intron | 20.0% |
| !! | AGTTTAATCAGCTTATAATT+AGG | - | chr4_1:84001588-84001607 | None:intergenic | 20.0% |
| !! | TTTATGTACATAATGTCATT+CGG | + | chr4_1:84002014-84002033 | Msa0579330:three_prime_UTR | 20.0% |
| ! | AATTTCTACAGAGAAGAAAA+AGG | + | chr4_1:84000302-84000321 | Msa0579330:CDS | 25.0% |
| !! | GAGTCATGATTATGATTTTA+TGG | + | chr4_1:84000362-84000381 | Msa0579330:CDS | 25.0% |
| !! | AAATCTTCATTTTCCCATAT+AGG | + | chr4_1:84000522-84000541 | Msa0579330:CDS | 25.0% |
| ! | TTTAACGTTCTTGTATTCTT+AGG | + | chr4_1:84000694-84000713 | Msa0579330:intron | 25.0% |
| ! | TTAACGTTCTTGTATTCTTA+GGG | + | chr4_1:84000695-84000714 | Msa0579330:intron | 25.0% |
| ! | TGTATTCTTAGGGATAAATT+CGG | + | chr4_1:84000705-84000724 | Msa0579330:intron | 25.0% |
| !! | TTTAAAATCACAGATGAACA+AGG | + | chr4_1:84000874-84000893 | Msa0579330:CDS | 25.0% |
| ! | CTTCTATTAGAGAAGAAAAA+AGG | + | chr4_1:84000917-84000936 | Msa0579330:CDS | 25.0% |
| !!! | TTTGATTTTTCACCAAAAGT+AGG | - | chr4_1:84000991-84001010 | None:intergenic | 25.0% |
| ! | GAGAAATGATGATAAAAAAC+CGG | + | chr4_1:84001011-84001030 | Msa0579330:CDS | 25.0% |
| !!! | TTGGTTTTTCTTCTTTTCTA+AGG | + | chr4_1:84002130-84002149 | Msa0579330:three_prime_UTR | 25.0% |
| ! | AATTTCTACAGAGAAGAAAA+AGG | + | chr4_1:84000302-84000321 | Msa0579330:CDS | 25.0% |
| !! | GAGTCATGATTATGATTTTA+TGG | + | chr4_1:84000362-84000381 | Msa0579330:CDS | 25.0% |
| !! | AAATCTTCATTTTCCCATAT+AGG | + | chr4_1:84000522-84000541 | Msa0579330:CDS | 25.0% |
| ! | TTTAACGTTCTTGTATTCTT+AGG | + | chr4_1:84000694-84000713 | Msa0579330:intron | 25.0% |
| ! | TTAACGTTCTTGTATTCTTA+GGG | + | chr4_1:84000695-84000714 | Msa0579330:intron | 25.0% |
| ! | TGTATTCTTAGGGATAAATT+CGG | + | chr4_1:84000705-84000724 | Msa0579330:intron | 25.0% |
| !! | TTTAAAATCACAGATGAACA+AGG | + | chr4_1:84000874-84000893 | Msa0579330:CDS | 25.0% |
| ! | CTTCTATTAGAGAAGAAAAA+AGG | + | chr4_1:84000917-84000936 | Msa0579330:CDS | 25.0% |
| !!! | TTTGATTTTTCACCAAAAGT+AGG | - | chr4_1:84000991-84001010 | None:intergenic | 25.0% |
| ! | GAGAAATGATGATAAAAAAC+CGG | + | chr4_1:84001011-84001030 | Msa0579330:CDS | 25.0% |
| !!! | TTGGTTTTTCTTCTTTTCTA+AGG | + | chr4_1:84002130-84002149 | Msa0579330:three_prime_UTR | 25.0% |
| ! | AGAAGAAAAAGGCACATAAT+TGG | + | chr4_1:84000313-84000332 | Msa0579330:CDS | 30.0% |
| AGAACGTTAAAAACTCTTGA+GGG | - | chr4_1:84000685-84000704 | None:intergenic | 30.0% | |
| AAGAACGTTAAAAACTCTTG+AGG | - | chr4_1:84000686-84000705 | None:intergenic | 30.0% | |
| TCTCTAATAGAAGATGTTGT+TGG | - | chr4_1:84000910-84000929 | None:intergenic | 30.0% | |
| ! | ATGACAAAAACTCCTACTTT+TGG | + | chr4_1:84000976-84000995 | Msa0579330:CDS | 30.0% |
| AAATCTTTACCACCAAAACT+TGG | - | chr4_1:84001060-84001079 | None:intergenic | 30.0% | |
| !!! | TTGGGACAATTTTTGGTTTT+GGG | - | chr4_1:84001113-84001132 | None:intergenic | 30.0% |
| AGCTCAAAAAGATCAAAGAA+AGG | + | chr4_1:84001247-84001266 | Msa0579330:CDS | 30.0% | |
| TGTTAGAGACAATAGATTCA+TGG | + | chr4_1:84001390-84001409 | Msa0579330:CDS | 30.0% | |
| GTTAGAGACAATAGATTCAT+GGG | + | chr4_1:84001391-84001410 | Msa0579330:CDS | 30.0% | |
| ! | GAGGTTAGATTTTCATATTC+AGG | + | chr4_1:84001458-84001477 | Msa0579330:intron | 30.0% |
| TTAAAGTGGTTATCCAAACA+GGG | - | chr4_1:84001484-84001503 | None:intergenic | 30.0% | |
| ATTAAAGTGGTTATCCAAAC+AGG | - | chr4_1:84001485-84001504 | None:intergenic | 30.0% | |
| !!! | GAGAATTAACAAGAGCATTT+TGG | - | chr4_1:84001737-84001756 | None:intergenic | 30.0% |
| GTTAATTCTCTGATAAAGTG+TGG | + | chr4_1:84001747-84001766 | Msa0579330:intron | 30.0% | |
| AAAGTGAAAATACACGGAAA+AGG | + | chr4_1:84001792-84001811 | Msa0579330:CDS | 30.0% | |
| AAGTGAAAATACACGGAAAA+GGG | + | chr4_1:84001793-84001812 | Msa0579330:CDS | 30.0% | |
| GCAAACATTATTAGAACAAC+AGG | + | chr4_1:84001932-84001951 | Msa0579330:CDS | 30.0% | |
| AGAAAAGAAGAAAAACCAAG+TGG | - | chr4_1:84002129-84002148 | None:intergenic | 30.0% | |
| ! | AGAAGAAAAAGGCACATAAT+TGG | + | chr4_1:84000313-84000332 | Msa0579330:CDS | 30.0% |
| AGAACGTTAAAAACTCTTGA+GGG | - | chr4_1:84000685-84000704 | None:intergenic | 30.0% | |
| AAGAACGTTAAAAACTCTTG+AGG | - | chr4_1:84000686-84000705 | None:intergenic | 30.0% | |
| TCTCTAATAGAAGATGTTGT+TGG | - | chr4_1:84000910-84000929 | None:intergenic | 30.0% | |
| ! | ATGACAAAAACTCCTACTTT+TGG | + | chr4_1:84000976-84000995 | Msa0579330:CDS | 30.0% |
| AAATCTTTACCACCAAAACT+TGG | - | chr4_1:84001060-84001079 | None:intergenic | 30.0% | |
| !!! | TTGGGACAATTTTTGGTTTT+GGG | - | chr4_1:84001113-84001132 | None:intergenic | 30.0% |
| AGCTCAAAAAGATCAAAGAA+AGG | + | chr4_1:84001247-84001266 | Msa0579330:CDS | 30.0% | |
| TGTTAGAGACAATAGATTCA+TGG | + | chr4_1:84001390-84001409 | Msa0579330:CDS | 30.0% | |
| GTTAGAGACAATAGATTCAT+GGG | + | chr4_1:84001391-84001410 | Msa0579330:CDS | 30.0% | |
| ! | GAGGTTAGATTTTCATATTC+AGG | + | chr4_1:84001458-84001477 | Msa0579330:intron | 30.0% |
| TTAAAGTGGTTATCCAAACA+GGG | - | chr4_1:84001484-84001503 | None:intergenic | 30.0% | |
| ATTAAAGTGGTTATCCAAAC+AGG | - | chr4_1:84001485-84001504 | None:intergenic | 30.0% | |
| !!! | GAGAATTAACAAGAGCATTT+TGG | - | chr4_1:84001737-84001756 | None:intergenic | 30.0% |
| GTTAATTCTCTGATAAAGTG+TGG | + | chr4_1:84001747-84001766 | Msa0579330:intron | 30.0% | |
| AAAGTGAAAATACACGGAAA+AGG | + | chr4_1:84001792-84001811 | Msa0579330:CDS | 30.0% | |
| AAGTGAAAATACACGGAAAA+GGG | + | chr4_1:84001793-84001812 | Msa0579330:CDS | 30.0% | |
| GCAAACATTATTAGAACAAC+AGG | + | chr4_1:84001932-84001951 | Msa0579330:CDS | 30.0% | |
| AGAAAAGAAGAAAAACCAAG+TGG | - | chr4_1:84002129-84002148 | None:intergenic | 30.0% | |
| ! | GGTTTCAGAGACAATTTTCA+AGG | + | chr4_1:84000334-84000353 | Msa0579330:CDS | 35.0% |
| TTTATCATAGGCTTTGCTTC+TGG | - | chr4_1:84000502-84000521 | None:intergenic | 35.0% | |
| ACTCAATATGCATCACTTGT+AGG | + | chr4_1:84000847-84000866 | Msa0579330:intron | 35.0% | |
| !!! | GTTTTTGTCATTGATGATGC+TGG | - | chr4_1:84000967-84000986 | None:intergenic | 35.0% |
| !!! | CTTTTTGGTGTTAGGATATC+CGG | - | chr4_1:84001033-84001052 | None:intergenic | 35.0% |
| !!! | TGGGACAATTTTTGGTTTTG+GGG | - | chr4_1:84001112-84001131 | None:intergenic | 35.0% |
| !!! | GTTGGGACAATTTTTGGTTT+TGG | - | chr4_1:84001114-84001133 | None:intergenic | 35.0% |
| AGAAGCAAAAGCAGATACTT+GGG | + | chr4_1:84001215-84001234 | Msa0579330:CDS | 35.0% | |
| AAAAGCAGATACTTGGGAAA+GGG | + | chr4_1:84001221-84001240 | Msa0579330:CDS | 35.0% | |
| CAATAGATTCATGGGAAAAG+CGG | + | chr4_1:84001399-84001418 | Msa0579330:CDS | 35.0% | |
| TGCAGCAAAGTGAAAATACA+CGG | + | chr4_1:84001786-84001805 | Msa0579330:intron | 35.0% | |
| TATATAGACGAGATTGCAGA+AGG | + | chr4_1:84001851-84001870 | Msa0579330:CDS | 35.0% | |
| TTCATTCTTTCGTCTCTCAT+CGG | - | chr4_1:84001891-84001910 | None:intergenic | 35.0% | |
| AACGCTGAAAGCAAAAGATA+AGG | + | chr4_1:84001910-84001929 | Msa0579330:CDS | 35.0% | |
| GTTCTTTCTTTCTTAGAAGC+AGG | - | chr4_1:84001978-84001997 | None:intergenic | 35.0% | |
| ! | GGTTTCAGAGACAATTTTCA+AGG | + | chr4_1:84000334-84000353 | Msa0579330:CDS | 35.0% |
| TTTATCATAGGCTTTGCTTC+TGG | - | chr4_1:84000502-84000521 | None:intergenic | 35.0% | |
| ACTCAATATGCATCACTTGT+AGG | + | chr4_1:84000847-84000866 | Msa0579330:intron | 35.0% | |
| !!! | GTTTTTGTCATTGATGATGC+TGG | - | chr4_1:84000967-84000986 | None:intergenic | 35.0% |
| !!! | CTTTTTGGTGTTAGGATATC+CGG | - | chr4_1:84001033-84001052 | None:intergenic | 35.0% |
| !!! | TGGGACAATTTTTGGTTTTG+GGG | - | chr4_1:84001112-84001131 | None:intergenic | 35.0% |
| !!! | GTTGGGACAATTTTTGGTTT+TGG | - | chr4_1:84001114-84001133 | None:intergenic | 35.0% |
| AGAAGCAAAAGCAGATACTT+GGG | + | chr4_1:84001215-84001234 | Msa0579330:CDS | 35.0% | |
| AAAAGCAGATACTTGGGAAA+GGG | + | chr4_1:84001221-84001240 | Msa0579330:CDS | 35.0% | |
| CAATAGATTCATGGGAAAAG+CGG | + | chr4_1:84001399-84001418 | Msa0579330:CDS | 35.0% | |
| TGCAGCAAAGTGAAAATACA+CGG | + | chr4_1:84001786-84001805 | Msa0579330:intron | 35.0% | |
| TATATAGACGAGATTGCAGA+AGG | + | chr4_1:84001851-84001870 | Msa0579330:CDS | 35.0% | |
| TTCATTCTTTCGTCTCTCAT+CGG | - | chr4_1:84001891-84001910 | None:intergenic | 35.0% | |
| AACGCTGAAAGCAAAAGATA+AGG | + | chr4_1:84001910-84001929 | Msa0579330:CDS | 35.0% | |
| GTTCTTTCTTTCTTAGAAGC+AGG | - | chr4_1:84001978-84001997 | None:intergenic | 35.0% | |
| TTCCACATGAGCAGAAAATG+TGG | + | chr4_1:84000448-84000467 | Msa0579330:CDS | 40.0% | |
| TCCACATGAGCAGAAAATGT+GGG | + | chr4_1:84000449-84000468 | Msa0579330:CDS | 40.0% | |
| TTTGGATGCAGCACCTATAT+GGG | - | chr4_1:84000538-84000557 | None:intergenic | 40.0% | |
| ! | TTTTGGATGCAGCACCTATA+TGG | - | chr4_1:84000539-84000558 | None:intergenic | 40.0% |
| GCTGCATCCAAAAGATTATC+AGG | + | chr4_1:84000546-84000565 | Msa0579330:CDS | 40.0% | |
| CACAGATGAACAAGGAAACA+AGG | + | chr4_1:84000882-84000901 | Msa0579330:CDS | 40.0% | |
| CGGATATCCTAACACCAAAA+AGG | + | chr4_1:84001031-84001050 | Msa0579330:CDS | 40.0% | |
| !!! | TTGGAGTCCTTTTTGGTGTT+AGG | - | chr4_1:84001041-84001060 | None:intergenic | 40.0% |
| ! | CCAAAACTTGGAGTCCTTTT+TGG | - | chr4_1:84001048-84001067 | None:intergenic | 40.0% |
| ! | CCAAAAAGGACTCCAAGTTT+TGG | + | chr4_1:84001045-84001064 | Msa0579330:CDS | 40.0% |
| !! | AAAAGGACTCCAAGTTTTGG+TGG | + | chr4_1:84001048-84001067 | Msa0579330:CDS | 40.0% |
| !!! | ATTTTTGGTTTTGGGGTCTC+AGG | - | chr4_1:84001105-84001124 | None:intergenic | 40.0% |
| CAGAAGCAAAAGCAGATACT+TGG | + | chr4_1:84001214-84001233 | Msa0579330:CDS | 40.0% | |
| CAAAAGCAGATACTTGGGAA+AGG | + | chr4_1:84001220-84001239 | Msa0579330:CDS | 40.0% | |
| TTTCATATTCAGGCCCTGTT+TGG | + | chr4_1:84001468-84001487 | Msa0579330:intron | 40.0% | |
| GTGTAAGCGCTCAATTAAAG+TGG | - | chr4_1:84001498-84001517 | None:intergenic | 40.0% | |
| TGCAGTGTACAAAATCCACT+TGG | + | chr4_1:84002111-84002130 | Msa0579330:three_prime_UTR | 40.0% | |
| TTCCACATGAGCAGAAAATG+TGG | + | chr4_1:84000448-84000467 | Msa0579330:CDS | 40.0% | |
| TCCACATGAGCAGAAAATGT+GGG | + | chr4_1:84000449-84000468 | Msa0579330:CDS | 40.0% | |
| TTTGGATGCAGCACCTATAT+GGG | - | chr4_1:84000538-84000557 | None:intergenic | 40.0% | |
| ! | TTTTGGATGCAGCACCTATA+TGG | - | chr4_1:84000539-84000558 | None:intergenic | 40.0% |
| GCTGCATCCAAAAGATTATC+AGG | + | chr4_1:84000546-84000565 | Msa0579330:CDS | 40.0% | |
| CACAGATGAACAAGGAAACA+AGG | + | chr4_1:84000882-84000901 | Msa0579330:CDS | 40.0% | |
| CGGATATCCTAACACCAAAA+AGG | + | chr4_1:84001031-84001050 | Msa0579330:CDS | 40.0% | |
| !!! | TTGGAGTCCTTTTTGGTGTT+AGG | - | chr4_1:84001041-84001060 | None:intergenic | 40.0% |
| ! | CCAAAACTTGGAGTCCTTTT+TGG | - | chr4_1:84001048-84001067 | None:intergenic | 40.0% |
| ! | CCAAAAAGGACTCCAAGTTT+TGG | + | chr4_1:84001045-84001064 | Msa0579330:CDS | 40.0% |
| !! | AAAAGGACTCCAAGTTTTGG+TGG | + | chr4_1:84001048-84001067 | Msa0579330:CDS | 40.0% |
| !!! | ATTTTTGGTTTTGGGGTCTC+AGG | - | chr4_1:84001105-84001124 | None:intergenic | 40.0% |
| CAGAAGCAAAAGCAGATACT+TGG | + | chr4_1:84001214-84001233 | Msa0579330:CDS | 40.0% | |
| CAAAAGCAGATACTTGGGAA+AGG | + | chr4_1:84001220-84001239 | Msa0579330:CDS | 40.0% | |
| TTTCATATTCAGGCCCTGTT+TGG | + | chr4_1:84001468-84001487 | Msa0579330:intron | 40.0% | |
| GTGTAAGCGCTCAATTAAAG+TGG | - | chr4_1:84001498-84001517 | None:intergenic | 40.0% | |
| TGCAGTGTACAAAATCCACT+TGG | + | chr4_1:84002111-84002130 | Msa0579330:three_prime_UTR | 40.0% | |
| ! | TCCCACATTTTCTGCTCATG+TGG | - | chr4_1:84000453-84000472 | None:intergenic | 45.0% |
| ATAGGCTTTGCTTCTGGTCT+TGG | - | chr4_1:84000496-84000515 | None:intergenic | 45.0% | |
| CTGAGTAGAACCACAATGTG+CGG | + | chr4_1:84000650-84000669 | Msa0579330:intron | 45.0% | |
| AATTCGGACTCACTACCTCT+TGG | + | chr4_1:84000721-84000740 | Msa0579330:intron | 45.0% | |
| CAAGTCTCTTTCAGTCCAAG+AGG | - | chr4_1:84000739-84000758 | None:intergenic | 45.0% | |
| ! | GACGTGGTTGGGACAATTTT+TGG | - | chr4_1:84001120-84001139 | None:intergenic | 45.0% |
| ACGCAAGCTAAACAAGCATG+AGG | + | chr4_1:84001439-84001458 | Msa0579330:CDS | 45.0% | |
| AGAACAACAGGAAAGCTTCC+AGG | + | chr4_1:84001944-84001963 | Msa0579330:CDS | 45.0% | |
| GAACAACAGGAAAGCTTCCA+GGG | + | chr4_1:84001945-84001964 | Msa0579330:CDS | 45.0% | |
| AACAACAGGAAAGCTTCCAG+GGG | + | chr4_1:84001946-84001965 | Msa0579330:CDS | 45.0% | |
| ! | TCCCACATTTTCTGCTCATG+TGG | - | chr4_1:84000453-84000472 | None:intergenic | 45.0% |
| ATAGGCTTTGCTTCTGGTCT+TGG | - | chr4_1:84000496-84000515 | None:intergenic | 45.0% | |
| CTGAGTAGAACCACAATGTG+CGG | + | chr4_1:84000650-84000669 | Msa0579330:intron | 45.0% | |
| AATTCGGACTCACTACCTCT+TGG | + | chr4_1:84000721-84000740 | Msa0579330:intron | 45.0% | |
| CAAGTCTCTTTCAGTCCAAG+AGG | - | chr4_1:84000739-84000758 | None:intergenic | 45.0% | |
| ! | GACGTGGTTGGGACAATTTT+TGG | - | chr4_1:84001120-84001139 | None:intergenic | 45.0% |
| ACGCAAGCTAAACAAGCATG+AGG | + | chr4_1:84001439-84001458 | Msa0579330:CDS | 45.0% | |
| AGAACAACAGGAAAGCTTCC+AGG | + | chr4_1:84001944-84001963 | Msa0579330:CDS | 45.0% | |
| GAACAACAGGAAAGCTTCCA+GGG | + | chr4_1:84001945-84001964 | Msa0579330:CDS | 45.0% | |
| AACAACAGGAAAGCTTCCAG+GGG | + | chr4_1:84001946-84001965 | Msa0579330:CDS | 45.0% | |
| ! | TGTGGTTCTACTCAGCTCGA+TGG | - | chr4_1:84000645-84000664 | None:intergenic | 50.0% |
| TAGAACCACAATGTGCGGCA+AGG | + | chr4_1:84000655-84000674 | Msa0579330:intron | 50.0% | |
| ! | GCGAATGAGGTGGTCTTTTC+AGG | - | chr4_1:84000943-84000962 | None:intergenic | 50.0% |
| ! | TGATGATGCTGGTGCGAATG+AGG | - | chr4_1:84000956-84000975 | None:intergenic | 50.0% |
| !! | CTAGTTGATGGTCTGACAGG+AGG | - | chr4_1:84001183-84001202 | None:intergenic | 50.0% |
| !! | GGTCTAGTTGATGGTCTGAC+AGG | - | chr4_1:84001186-84001205 | None:intergenic | 50.0% |
| GTCAGACCATCAACTAGACC+AGG | + | chr4_1:84001186-84001205 | Msa0579330:CDS | 50.0% | |
| GTTGCACCTGGTCTAGTTGA+TGG | - | chr4_1:84001195-84001214 | None:intergenic | 50.0% | |
| ! | GCTTTTGCTTCTGTTGCACC+TGG | - | chr4_1:84001207-84001226 | None:intergenic | 50.0% |
| CACGGAAAAGGGAGAAAGCA+TGG | + | chr4_1:84001804-84001823 | Msa0579330:CDS | 50.0% | |
| ! | TGTGGTTCTACTCAGCTCGA+TGG | - | chr4_1:84000645-84000664 | None:intergenic | 50.0% |
| TAGAACCACAATGTGCGGCA+AGG | + | chr4_1:84000655-84000674 | Msa0579330:intron | 50.0% | |
| ! | GCGAATGAGGTGGTCTTTTC+AGG | - | chr4_1:84000943-84000962 | None:intergenic | 50.0% |
| ! | TGATGATGCTGGTGCGAATG+AGG | - | chr4_1:84000956-84000975 | None:intergenic | 50.0% |
| !! | CTAGTTGATGGTCTGACAGG+AGG | - | chr4_1:84001183-84001202 | None:intergenic | 50.0% |
| !! | GGTCTAGTTGATGGTCTGAC+AGG | - | chr4_1:84001186-84001205 | None:intergenic | 50.0% |
| GTCAGACCATCAACTAGACC+AGG | + | chr4_1:84001186-84001205 | Msa0579330:CDS | 50.0% | |
| GTTGCACCTGGTCTAGTTGA+TGG | - | chr4_1:84001195-84001214 | None:intergenic | 50.0% | |
| ! | GCTTTTGCTTCTGTTGCACC+TGG | - | chr4_1:84001207-84001226 | None:intergenic | 50.0% |
| CACGGAAAAGGGAGAAAGCA+TGG | + | chr4_1:84001804-84001823 | Msa0579330:CDS | 50.0% | |
| GGAAATGGAGCATGCCACAG+CGG | + | chr4_1:84000383-84000402 | Msa0579330:CDS | 55.0% | |
| GGAGTTGCCTGAGACCTCAT+TGG | + | chr4_1:84000470-84000489 | Msa0579330:CDS | 55.0% | |
| GTCTTGGCCAATGAGGTCTC+AGG | - | chr4_1:84000480-84000499 | None:intergenic | 55.0% | |
| !! | GCTTCTGGTCTTGGCCAATG+AGG | - | chr4_1:84000487-84000506 | None:intergenic | 55.0% |
| TGATGCTGGTGCGAATGAGG+TGG | - | chr4_1:84000953-84000972 | None:intergenic | 55.0% | |
| TTGTCCCAACCACGTCCTCA+TGG | + | chr4_1:84001124-84001143 | Msa0579330:CDS | 55.0% | |
| GATGGTCTGACAGGAGGTTG+TGG | - | chr4_1:84001177-84001196 | None:intergenic | 55.0% | |
| TAGAAGCAGGAACAAGCCCC+TGG | - | chr4_1:84001965-84001984 | None:intergenic | 55.0% | |
| GGAAATGGAGCATGCCACAG+CGG | + | chr4_1:84000383-84000402 | Msa0579330:CDS | 55.0% | |
| GGAGTTGCCTGAGACCTCAT+TGG | + | chr4_1:84000470-84000489 | Msa0579330:CDS | 55.0% | |
| GTCTTGGCCAATGAGGTCTC+AGG | - | chr4_1:84000480-84000499 | None:intergenic | 55.0% | |
| !! | GCTTCTGGTCTTGGCCAATG+AGG | - | chr4_1:84000487-84000506 | None:intergenic | 55.0% |
| TGATGCTGGTGCGAATGAGG+TGG | - | chr4_1:84000953-84000972 | None:intergenic | 55.0% | |
| TTGTCCCAACCACGTCCTCA+TGG | + | chr4_1:84001124-84001143 | Msa0579330:CDS | 55.0% | |
| GATGGTCTGACAGGAGGTTG+TGG | - | chr4_1:84001177-84001196 | None:intergenic | 55.0% | |
| TAGAAGCAGGAACAAGCCCC+TGG | - | chr4_1:84001965-84001984 | None:intergenic | 55.0% | |
| GAGAGCCTTGCCGCACATTG+TGG | - | chr4_1:84000663-84000682 | None:intergenic | 60.0% | |
| CTGACAGGAGGTTGTGGTGG+CGG | - | chr4_1:84001171-84001190 | None:intergenic | 60.0% | |
| GGTCTGACAGGAGGTTGTGG+TGG | - | chr4_1:84001174-84001193 | None:intergenic | 60.0% | |
| GAGAGCCTTGCCGCACATTG+TGG | - | chr4_1:84000663-84000682 | None:intergenic | 60.0% | |
| CTGACAGGAGGTTGTGGTGG+CGG | - | chr4_1:84001171-84001190 | None:intergenic | 60.0% | |
| GGTCTGACAGGAGGTTGTGG+TGG | - | chr4_1:84001174-84001193 | None:intergenic | 60.0% | |
| TGCTGCAGCAGCTACCGCTG+TGG | - | chr4_1:84000400-84000419 | None:intergenic | 65.0% | |
| GCGGCCATGAGGACGTGGTT+GGG | - | chr4_1:84001131-84001150 | None:intergenic | 65.0% | |
| TGCGGCCATGAGGACGTGGT+TGG | - | chr4_1:84001132-84001151 | None:intergenic | 65.0% | |
| !! | ACAGGAGGTTGTGGTGGCGG+CGG | - | chr4_1:84001168-84001187 | None:intergenic | 65.0% |
| TGCTGCAGCAGCTACCGCTG+TGG | - | chr4_1:84000400-84000419 | None:intergenic | 65.0% | |
| GCGGCCATGAGGACGTGGTT+GGG | - | chr4_1:84001131-84001150 | None:intergenic | 65.0% | |
| TGCGGCCATGAGGACGTGGT+TGG | - | chr4_1:84001132-84001151 | None:intergenic | 65.0% | |
| !! | ACAGGAGGTTGTGGTGGCGG+CGG | - | chr4_1:84001168-84001187 | None:intergenic | 65.0% |
| CGGCTGCGGCCATGAGGACG+TGG | - | chr4_1:84001136-84001155 | None:intergenic | 75.0% | |
| !! | TGGTGGCGGCTGCGGCCATG+AGG | - | chr4_1:84001142-84001161 | None:intergenic | 75.0% |
| !! | TGTGGTGGCGGCGGAGGTGG+TGG | - | chr4_1:84001159-84001178 | None:intergenic | 75.0% |
| !! | GGTTGTGGTGGCGGCGGAGG+TGG | - | chr4_1:84001162-84001181 | None:intergenic | 75.0% |
| !! | GGAGGTTGTGGTGGCGGCGG+AGG | - | chr4_1:84001165-84001184 | None:intergenic | 75.0% |
| CGGCTGCGGCCATGAGGACG+TGG | - | chr4_1:84001136-84001155 | None:intergenic | 75.0% | |
| !! | TGGTGGCGGCTGCGGCCATG+AGG | - | chr4_1:84001142-84001161 | None:intergenic | 75.0% |
| !! | TGTGGTGGCGGCGGAGGTGG+TGG | - | chr4_1:84001159-84001178 | None:intergenic | 75.0% |
| !! | GGTTGTGGTGGCGGCGGAGG+TGG | - | chr4_1:84001162-84001181 | None:intergenic | 75.0% |
| !! | GGAGGTTGTGGTGGCGGCGG+AGG | - | chr4_1:84001165-84001184 | None:intergenic | 75.0% |
| !!! | GGCGGAGGTGGTGGCGGCTG+CGG | - | chr4_1:84001150-84001169 | None:intergenic | 80.0% |
| !! | GGTGGCGGCGGAGGTGGTGG+CGG | - | chr4_1:84001156-84001175 | None:intergenic | 80.0% |
| !!! | GGCGGAGGTGGTGGCGGCTG+CGG | - | chr4_1:84001150-84001169 | None:intergenic | 80.0% |
| !! | GGTGGCGGCGGAGGTGGTGG+CGG | - | chr4_1:84001156-84001175 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 84000294 | 84002229 | 84000294 | ID=Msa0579330;Name=Msa0579330 |
| chr4_1 | mRNA | 84000294 | 84002229 | 84000294 | ID=Msa0579330-mRNA-1;Parent=Msa0579330;Name=Msa0579330-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.75|1|1|1|4|244|316 |
| chr4_1 | exon | 84000294 | 84000567 | 84000294 | ID=Msa0579330-mRNA-1:exon:30732;Parent=Msa0579330-mRNA-1 |
| chr4_1 | exon | 84000869 | 84001268 | 84000869 | ID=Msa0579330-mRNA-1:exon:30733;Parent=Msa0579330-mRNA-1 |
| chr4_1 | exon | 84001379 | 84001460 | 84001379 | ID=Msa0579330-mRNA-1:exon:30734;Parent=Msa0579330-mRNA-1 |
| chr4_1 | exon | 84001791 | 84002229 | 84001791 | ID=Msa0579330-mRNA-1:exon:30735;Parent=Msa0579330-mRNA-1 |
| chr4_1 | CDS | 84000294 | 84000567 | 84000294 | ID=Msa0579330-mRNA-1:cds;Parent=Msa0579330-mRNA-1 |
| chr4_1 | CDS | 84000869 | 84001268 | 84000869 | ID=Msa0579330-mRNA-1:cds;Parent=Msa0579330-mRNA-1 |
| chr4_1 | CDS | 84001379 | 84001460 | 84001379 | ID=Msa0579330-mRNA-1:cds;Parent=Msa0579330-mRNA-1 |
| chr4_1 | CDS | 84001791 | 84001985 | 84001791 | ID=Msa0579330-mRNA-1:cds;Parent=Msa0579330-mRNA-1 |
| chr4_1 | three_prime_UTR | 84001986 | 84002229 | 84001986 | ID=Msa0579330-mRNA-1:three_prime_utr;Parent=Msa0579330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
