AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0206690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0206690 MtrunA17_Chr2g0305121 99.134 231 2 0 1 231 1 231 1.09e-165 457
Msa0206690 MtrunA17_Chr4g0008681 94.805 231 12 0 1 231 1 231 1.78e-137 385
Msa0206690 MtrunA17_Chr5g0441161 57.576 231 90 3 1 231 1 223 5.56e-80 239
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0206690 AT2G18110.1 80.088 226 44 1 7 231 6 231 4.09e-112 321
Msa0206690 AT1G30230.1 79.204 226 46 1 7 231 6 231 3.99e-108 311
Msa0206690 AT1G30230.2 79.204 226 46 1 7 231 6 231 8.48e-108 311
Msa0206690 AT5G12110.1 59.574 235 84 3 1 231 1 228 6.66e-78 234
Msa0206690 AT5G19510.1 57.576 231 91 2 1 231 1 224 1.28e-72 221

Find 78 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGACTGTAGTGGTGTTTC+TGG 0.140941 2_1:-36359207 Msa0206690:intron
TTCAGTTGGAAGGGTTGTTT+TGG 0.210487 2_1:-36358803 Msa0206690:CDS
TCAGTTCCATCATATGAATA+TGG 0.245099 2_1:-36359398 Msa0206690:CDS
AAGTGAGAGTGAATTGAAAA+AGG 0.250665 2_1:+36360077 None:intergenic
TTGTGACTTTATCCATTATC+TGG 0.271413 2_1:-36357768 Msa0206690:three_prime_UTR
TCTTGTTTCCGTTGACAATA+TGG 0.314177 2_1:-36358112 Msa0206690:CDS
CATGTGACATTAAAATTTCA+TGG 0.324335 2_1:-36357700 Msa0206690:three_prime_UTR
TATAACCTTAAGGCTGAATC+TGG 0.331891 2_1:-36359620 Msa0206690:CDS
GCGGCCTTTGTGTCAGAAAC+TGG 0.339173 2_1:+36359123 None:intergenic
TTATAACACAATCCAGATAA+TGG 0.361755 2_1:+36357756 None:intergenic
GCATTCCCAGGGTTTGTTAG+AGG 0.367749 2_1:+36357672 None:intergenic
GCAGCAGCTGTGAAGGCATC+TGG 0.375915 2_1:-36359018 Msa0206690:CDS
GATGACGATGTTGATTTGTT+TGG 0.412687 2_1:-36359081 Msa0206690:CDS
TCAACCCAGATTCAGCCTTA+AGG 0.413508 2_1:+36359615 None:intergenic
TCAAATTATGCTTACTATTG+TGG 0.416944 2_1:-36358139 Msa0206690:CDS
TAGCCAAACTTGTTCCTGTT+GGG 0.428630 2_1:-36358179 Msa0206690:CDS
GGTGTTTCTGGTGAGGGATC+TGG 0.436594 2_1:-36359195 Msa0206690:CDS
GTACCCAACAGGAACAAGTT+TGG 0.443426 2_1:+36358176 None:intergenic
ACTCTGGACATACTCATTGA+TGG 0.454635 2_1:+36358065 None:intergenic
TTCTTGATACCGTACCCAAC+AGG 0.456829 2_1:+36358165 None:intergenic
ATTATTAGAAATGACAATCA+AGG 0.459771 2_1:-36357869 Msa0206690:three_prime_UTR
CAGTTCCATCATATGAATAT+GGG 0.459928 2_1:-36359397 Msa0206690:CDS
TTAGGGTAATTTGCATTCCC+AGG 0.464593 2_1:+36357660 None:intergenic
TGGGAAATCATCTGTATTGT+TGG 0.466041 2_1:-36358886 Msa0206690:CDS
GAAGAAGGCAGCTGAGGTAC+GGG 0.473783 2_1:-36359040 Msa0206690:CDS
TTCCGTTGACAATATGGTTG+AGG 0.479405 2_1:-36358106 Msa0206690:CDS
ATGTGACATTAAAATTTCAT+GGG 0.480876 2_1:-36357699 Msa0206690:three_prime_UTR
AGAAGAAGGCAGCTGAGGTA+CGG 0.481967 2_1:-36359041 Msa0206690:CDS
AGTTACACTCTATAACCTTA+AGG 0.486396 2_1:-36359630 Msa0206690:CDS
AGCAGTGAGATCTGTTCAGT+TGG 0.499725 2_1:-36358817 Msa0206690:CDS
TTCGTATGACATGGAGATCA+TGG 0.500082 2_1:-36357910 Msa0206690:three_prime_UTR
ACATTCCCATATTCATATGA+TGG 0.500557 2_1:+36359392 None:intergenic
TGATGTCATCCTTTGAAGCT+TGG 0.506163 2_1:+36359441 None:intergenic
GTGAGATCTGTTCAGTTGGA+AGG 0.509565 2_1:-36358813 Msa0206690:CDS
ATAGCCAAACTTGTTCCTGT+TGG 0.511083 2_1:-36358180 Msa0206690:intron
AAACTTGTTCCTGTTGGGTA+CGG 0.517929 2_1:-36358174 Msa0206690:CDS
TATTCATATGATGGAACTGA+TGG 0.520528 2_1:+36359401 None:intergenic
AGAGACTGAGGAAGAGAAGA+AGG 0.523236 2_1:-36359055 Msa0206690:CDS
CTTACACGCAGTTACATCAC+TGG 0.529989 2_1:-36359572 Msa0206690:CDS
CACAAAGGCCGCTGAAGCTG+AGG 0.532286 2_1:-36359112 Msa0206690:CDS
GGGTGTCCTCTAACAAACCC+TGG 0.533538 2_1:-36357678 Msa0206690:three_prime_UTR
GTTTAGGTACCAAGCTTCAA+AGG 0.538083 2_1:-36359450 Msa0206690:intron
CTCTGGACATACTCATTGAT+GGG 0.540335 2_1:+36358066 None:intergenic
AAGAGAGGCGAGGAGATTGA+AGG 0.541739 2_1:+36360027 None:intergenic
GGTACGGGCAGCAGCTGTGA+AGG 0.547454 2_1:-36359025 Msa0206690:CDS
ATGTCAGTCTCATCATCCCA+TGG 0.557563 2_1:+36358855 None:intergenic
TAGGGTAATTTGCATTCCCA+GGG 0.558896 2_1:+36357661 None:intergenic
TGTAGTGGTGTTTCTGGTGA+GGG 0.560203 2_1:-36359201 Msa0206690:intron
ATCTTCATCCTCAGCTTCAG+CGG 0.564518 2_1:+36359104 None:intergenic
AAATGACAGCAACAAGAAGT+AGG 0.568483 2_1:+36357807 None:intergenic
TGAGATCTGTTCAGTTGGAA+GGG 0.572783 2_1:-36358812 Msa0206690:CDS
CTGTAGTGGTGTTTCTGGTG+AGG 0.577236 2_1:-36359202 Msa0206690:intron
ATCCTCAACCATATTGTCAA+CGG 0.584339 2_1:+36358104 None:intergenic
AGGCCACAATGTCACAACTC+TGG 0.585892 2_1:+36358049 None:intergenic
GGAAGAGAAGAAGGCAGCTG+AGG 0.589650 2_1:-36359046 Msa0206690:CDS
ATAACCTTAAGGCTGAATCT+GGG 0.592348 2_1:-36359619 Msa0206690:CDS
CACTGTGGAATCTTCTCTTG+TGG 0.595343 2_1:-36359169 Msa0206690:CDS
ATGAATATGGGAATGTTGCT+AGG 0.597917 2_1:-36359385 Msa0206690:CDS
TGTGGAATCTTCTCTTGTGG+CGG 0.601010 2_1:-36359166 Msa0206690:CDS
TATTGTTGGATGTGAAGCCA+TGG 0.605647 2_1:-36358872 Msa0206690:CDS
GGTGTCCTCTAACAAACCCT+GGG 0.608582 2_1:-36357677 Msa0206690:three_prime_UTR
GAGTTTACCTGTGTTAAGAG+AGG 0.611958 2_1:+36360012 None:intergenic
TTATTAGAAATGACAATCAA+GGG 0.619399 2_1:-36357868 Msa0206690:three_prime_UTR
TATGACATGGAGATCATGGT+AGG 0.620700 2_1:-36357906 Msa0206690:three_prime_UTR
TGTGTCAGAAACTGGAGGAG+TGG 0.624152 2_1:+36359131 None:intergenic
TTACACGCAGTTACATCACT+GGG 0.625744 2_1:-36359571 Msa0206690:intron
TCCTCCAGTTTCTGACACAA+AGG 0.638013 2_1:-36359127 Msa0206690:CDS
TGTCCAGAGTTGTGACATTG+TGG 0.639251 2_1:-36358052 Msa0206690:CDS
TGTGACATTAAAATTTCATG+GGG 0.642527 2_1:-36357698 Msa0206690:three_prime_UTR
GACATGGAGATCATGGTAGG+AGG 0.643475 2_1:-36357903 Msa0206690:three_prime_UTR
AATCTGCAATTCGTATGACA+TGG 0.645534 2_1:-36357919 Msa0206690:three_prime_UTR
ATTGTTGGATGTGAAGCCAT+GGG 0.652625 2_1:-36358871 Msa0206690:CDS
GCCTTTGTGTCAGAAACTGG+AGG 0.658117 2_1:+36359126 None:intergenic
CTCCTCGCCTCTCTTAACAC+AGG 0.661656 2_1:-36360019 Msa0206690:intron
TGAGGGATCTGGTGTCACTG+TGG 0.668824 2_1:-36359184 Msa0206690:CDS
TTTGTTTGGTGAAGAGACTG+AGG 0.673347 2_1:-36359067 Msa0206690:CDS
TACCTGTGTTAAGAGAGGCG+AGG 0.690075 2_1:+36360017 None:intergenic
AATATGGGAATGTTGCTAGG+TGG 0.778608 2_1:-36359382 Msa0206690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCATTATTTATTGATTTCA+AGG - chr2_1:36357849-36357868 Msa0206690:three_prime_UTR 15.0%
!!! TGAGAAATTGATTTTTTTTT+TGG - chr2_1:36357998-36358017 Msa0206690:intron 15.0%
!! AATCGACAAAAAAATAAAAA+TGG + chr2_1:36358962-36358981 None:intergenic 15.0%
!!! TTATTGTATACTATTTTTCA+AGG - chr2_1:36359052-36359071 Msa0206690:CDS 15.0%
!!! TTATTGTATACTATTTTTCA+AGG - chr2_1:36359052-36359071 Msa0206690:CDS 15.0%
!!! TTAATGTTTTTGAAACATTA+GGG + chr2_1:36360072-36360091 None:intergenic 15.0%
!!! TTTAATGTTTTTGAAACATT+AGG + chr2_1:36360073-36360092 None:intergenic 15.0%
!!! AAAAGGGTTTTGTTTTATAT+AGG + chr2_1:36357621-36357640 None:intergenic 20.0%
!! TATTGTTAACATCGAATTTA+GGG + chr2_1:36357766-36357785 None:intergenic 20.0%
!!! AGGAAAAAGATTGAATTTTT+CGG - chr2_1:36357869-36357888 Msa0206690:three_prime_UTR 20.0%
!!! TTCCTAATTTGAGTTTTTTT+TGG - chr2_1:36357938-36357957 Msa0206690:intron 20.0%
!!! TCCTAATTTGAGTTTTTTTT+GGG - chr2_1:36357939-36357958 Msa0206690:intron 20.0%
!! GAAGTAGAAGAAAAAAAAAA+TGG - chr2_1:36358058-36358077 Msa0206690:CDS 20.0%
!!! TGTTTTTATTTGATCTGTTT+AGG - chr2_1:36358246-36358265 Msa0206690:intron 20.0%
!! TTCATATCCTCATAATTATT+TGG - chr2_1:36358748-36358767 Msa0206690:intron 20.0%
!! ATAGTATACAATAAACTGAA+TGG + chr2_1:36359046-36359065 None:intergenic 20.0%
!! AAAATAAGATATTTCGCTAT+TGG + chr2_1:36359380-36359399 None:intergenic 20.0%
!! ATAAACTAATATCAGAATCA+TGG + chr2_1:36359505-36359524 None:intergenic 20.0%
!!! TTACTTACAGATTTTATTGA+AGG + chr2_1:36359686-36359705 None:intergenic 20.0%
!! ATTATTAGAAATGACAATCA+AGG - chr2_1:36359843-36359862 Msa0206690:intron 20.0%
!! TTATTAGAAATGACAATCAA+GGG - chr2_1:36359844-36359863 Msa0206690:intron 20.0%
!! AAAAACAAAAATCTCATCTT+AGG + chr2_1:36359880-36359899 None:intergenic 20.0%
!!! TAAGATGAGATTTTTGTTTT+TGG - chr2_1:36359879-36359898 Msa0206690:intron 20.0%
!!! AAGATGAGATTTTTGTTTTT+GGG - chr2_1:36359880-36359899 Msa0206690:intron 20.0%
!! ATGTGACATTAAAATTTCAT+GGG - chr2_1:36360013-36360032 Msa0206690:intron 20.0%
! CTATTGTTAACATCGAATTT+AGG + chr2_1:36357767-36357786 None:intergenic 25.0%
!!! TTTTCGGTAATTTGTGTTAA+TGG - chr2_1:36357885-36357904 Msa0206690:three_prime_UTR 25.0%
!! TTTCGGTAATTTGTGTTAAT+GGG - chr2_1:36357886-36357905 Msa0206690:three_prime_UTR 25.0%
!!! CCTAATTTGAGTTTTTTTTG+GGG - chr2_1:36357940-36357959 Msa0206690:intron 25.0%
!!! CTAATTTGAGTTTTTTTTGG+GGG - chr2_1:36357941-36357960 Msa0206690:intron 25.0%
! TCATATATAATCGACAAAGA+TGG + chr2_1:36358402-36358421 None:intergenic 25.0%
!! ATAATTATTTGGAATCTGGT+TGG - chr2_1:36358759-36358778 Msa0206690:intron 25.0%
!!! ATATGTTTGTTTTCCACTAT+TGG - chr2_1:36359116-36359135 Msa0206690:CDS 25.0%
!!! TATGTTTGTTTTCCACTATT+GGG - chr2_1:36359117-36359136 Msa0206690:CDS 25.0%
!!! ATAAGTTTGTTTTCCACTAT+TGG - chr2_1:36359304-36359323 Msa0206690:intron 25.0%
!!! TAAGTTTGTTTTCCACTATT+GGG - chr2_1:36359305-36359324 Msa0206690:intron 25.0%
! TCAAATTATGCTTACTATTG+TGG - chr2_1:36359573-36359592 Msa0206690:CDS 25.0%
!!! TTCAGATTTTATTTGTCTGT+TGG - chr2_1:36359708-36359727 Msa0206690:intron 25.0%
! TAATGCCATATCATATTCTT+TGG - chr2_1:36359765-36359784 Msa0206690:intron 25.0%
! TTATAACACAATCCAGATAA+TGG + chr2_1:36359959-36359978 None:intergenic 25.0%
! CATGTGACATTAAAATTTCA+TGG - chr2_1:36360012-36360031 Msa0206690:intron 25.0%
! TGTGACATTAAAATTTCATG+GGG - chr2_1:36360014-36360033 Msa0206690:intron 25.0%
AGTGAGAGTGAATTGAAAAA+GGG + chr2_1:36357637-36357656 None:intergenic 30.0%
AAGTGAGAGTGAATTGAAAA+AGG + chr2_1:36357638-36357657 None:intergenic 30.0%
CCTTAAAAAAACACAGATTC+GGG + chr2_1:36357824-36357843 None:intergenic 30.0%
GCCTTAAAAAAACACAGATT+CGG + chr2_1:36357825-36357844 None:intergenic 30.0%
CCCCAAAAAAAACTCAAATT+AGG + chr2_1:36357943-36357962 None:intergenic 30.0%
AGTTACACTCTATAACCTTA+AGG - chr2_1:36358082-36358101 Msa0206690:CDS 30.0%
! TATTCATATGATGGAACTGA+TGG + chr2_1:36358314-36358333 None:intergenic 30.0%
TCAGTTCCATCATATGAATA+TGG - chr2_1:36358314-36358333 Msa0206690:intron 30.0%
CAGTTCCATCATATGAATAT+GGG - chr2_1:36358315-36358334 Msa0206690:intron 30.0%
ACATTCCCATATTCATATGA+TGG + chr2_1:36358323-36358342 None:intergenic 30.0%
! ATTGAATTTTGTGACTGTAG+TGG - chr2_1:36358496-36358515 Msa0206690:intron 30.0%
CCAGATTCCAAATAATTATG+AGG + chr2_1:36358758-36358777 None:intergenic 30.0%
! CCTCATAATTATTTGGAATC+TGG - chr2_1:36358755-36358774 Msa0206690:intron 30.0%
! TGGACATCAATTTAGAGTAT+TGG - chr2_1:36358779-36358798 Msa0206690:intron 30.0%
!!! ATTTTTCAAGGCTATGTCTA+CGG - chr2_1:36359064-36359083 Msa0206690:CDS 30.0%
TCATATCTCACTTGATCTAA+TGG - chr2_1:36359153-36359172 Msa0206690:CDS 30.0%
! AACAAGTTTGCTTTCACTAT+TGG + chr2_1:36359192-36359211 None:intergenic 30.0%
!!! TATTTTTCAAGGCATGTCTA+TGG - chr2_1:36359252-36359271 Msa0206690:intron 30.0%
ATGGTGCACAAATAAGATAT+TGG - chr2_1:36359271-36359290 Msa0206690:intron 30.0%
TTGTGACTTTATCCATTATC+TGG - chr2_1:36359944-36359963 Msa0206690:intron 30.0%
!!! CCCGAATCTGTGTTTTTTTA+AGG - chr2_1:36357821-36357840 Msa0206690:three_prime_UTR 35.0%
TATAACCTTAAGGCTGAATC+TGG - chr2_1:36358092-36358111 Msa0206690:CDS 35.0%
ATAACCTTAAGGCTGAATCT+GGG - chr2_1:36358093-36358112 Msa0206690:CDS 35.0%
ATGAATATGGGAATGTTGCT+AGG - chr2_1:36358327-36358346 Msa0206690:intron 35.0%
ATAATCGACAAAGATGGTGA+GGG + chr2_1:36358396-36358415 None:intergenic 35.0%
TATAATCGACAAAGATGGTG+AGG + chr2_1:36358397-36358416 None:intergenic 35.0%
!! GATGACGATGTTGATTTGTT+TGG - chr2_1:36358631-36358650 Msa0206690:intron 35.0%
! TTTCTGCTGATTGCATTATC+AGG - chr2_1:36358803-36358822 Msa0206690:CDS 35.0%
TGGGAAATCATCTGTATTGT+TGG - chr2_1:36358826-36358845 Msa0206690:CDS 35.0%
ACGGTGCACAAATAAGATAT+TGG - chr2_1:36359083-36359102 Msa0206690:CDS 35.0%
GTGGAAAACAAACATATGCA+TGG + chr2_1:36359113-36359132 None:intergenic 35.0%
TATCTCACTTGATCTAATGG+TGG - chr2_1:36359156-36359175 Msa0206690:CDS 35.0%
! AGTGAAAGCAAACTTGTTCA+CGG - chr2_1:36359194-36359213 Msa0206690:CDS 35.0%
TAGATCAAGCGAGATATGAA+GGG + chr2_1:36359340-36359359 None:intergenic 35.0%
TTAGATCAAGCGAGATATGA+AGG + chr2_1:36359341-36359360 None:intergenic 35.0%
TCATATCTCGCTTGATCTAA+TGG - chr2_1:36359341-36359360 Msa0206690:intron 35.0%
! TCTTGTTTCCGTTGACAATA+TGG - chr2_1:36359600-36359619 Msa0206690:CDS 35.0%
ATCCTCAACCATATTGTCAA+CGG + chr2_1:36359611-36359630 None:intergenic 35.0%
CTGCACCAAAGAATATGATA+TGG + chr2_1:36359773-36359792 None:intergenic 35.0%
AATCTGCAATTCGTATGACA+TGG - chr2_1:36359793-36359812 Msa0206690:intron 35.0%
AAATGACAGCAACAAGAAGT+AGG + chr2_1:36359908-36359927 None:intergenic 35.0%
GAGTTTACCTGTGTTAAGAG+AGG + chr2_1:36357703-36357722 None:intergenic 40.0%
TTACACGCAGTTACATCACT+GGG - chr2_1:36358141-36358160 Msa0206690:CDS 40.0%
GTTTAGGTACCAAGCTTCAA+AGG - chr2_1:36358262-36358281 Msa0206690:intron 40.0%
!! TGATGTCATCCTTTGAAGCT+TGG + chr2_1:36358274-36358293 None:intergenic 40.0%
AATATGGGAATGTTGCTAGG+TGG - chr2_1:36358330-36358349 Msa0206690:intron 40.0%
TAATCGACAAAGATGGTGAG+GGG + chr2_1:36358395-36358414 None:intergenic 40.0%
! TTTGTTTGGTGAAGAGACTG+AGG - chr2_1:36358645-36358664 Msa0206690:intron 40.0%
! TGCTGATTGCATTATCAGGT+GGG - chr2_1:36358807-36358826 Msa0206690:CDS 40.0%
TATTGTTGGATGTGAAGCCA+TGG - chr2_1:36358840-36358859 Msa0206690:CDS 40.0%
ATTGTTGGATGTGAAGCCAT+GGG - chr2_1:36358841-36358860 Msa0206690:CDS 40.0%
TGAGATCTGTTCAGTTGGAA+GGG - chr2_1:36358900-36358919 Msa0206690:intron 40.0%
! TTCAGTTGGAAGGGTTGTTT+TGG - chr2_1:36358909-36358928 Msa0206690:intron 40.0%
!! TCAGTTGGAAGGGTTGTTTT+GGG - chr2_1:36358910-36358929 Msa0206690:intron 40.0%
TATCTCGCTTGATCTAATGG+TGG - chr2_1:36359344-36359363 Msa0206690:intron 40.0%
! ATAGCCAAACTTGTTCCTGT+TGG - chr2_1:36359532-36359551 Msa0206690:intron 40.0%
! TAGCCAAACTTGTTCCTGTT+GGG - chr2_1:36359533-36359552 Msa0206690:intron 40.0%
! AAACTTGTTCCTGTTGGGTA+CGG - chr2_1:36359538-36359557 Msa0206690:intron 40.0%
TTCCGTTGACAATATGGTTG+AGG - chr2_1:36359606-36359625 Msa0206690:CDS 40.0%
CTCTGGACATACTCATTGAT+GGG + chr2_1:36359649-36359668 None:intergenic 40.0%
ACTCTGGACATACTCATTGA+TGG + chr2_1:36359650-36359669 None:intergenic 40.0%
TTCGTATGACATGGAGATCA+TGG - chr2_1:36359802-36359821 Msa0206690:intron 40.0%
TATGACATGGAGATCATGGT+AGG - chr2_1:36359806-36359825 Msa0206690:intron 40.0%
! TAGGGTAATTTGCATTCCCA+GGG + chr2_1:36360054-36360073 None:intergenic 40.0%
! TTAGGGTAATTTGCATTCCC+AGG + chr2_1:36360055-36360074 None:intergenic 40.0%
TCAACCCAGATTCAGCCTTA+AGG + chr2_1:36358100-36358119 None:intergenic 45.0%
CTTACACGCAGTTACATCAC+TGG - chr2_1:36358140-36358159 Msa0206690:CDS 45.0%
TGTGACTGTAGTGGTGTTTC+TGG - chr2_1:36358505-36358524 Msa0206690:intron 45.0%
!! TGTAGTGGTGTTTCTGGTGA+GGG - chr2_1:36358511-36358530 Msa0206690:intron 45.0%
CACTGTGGAATCTTCTCTTG+TGG - chr2_1:36358543-36358562 Msa0206690:intron 45.0%
TGTGGAATCTTCTCTTGTGG+CGG - chr2_1:36358546-36358565 Msa0206690:intron 45.0%
TCCTCCAGTTTCTGACACAA+AGG - chr2_1:36358585-36358604 Msa0206690:intron 45.0%
ATCTTCATCCTCAGCTTCAG+CGG + chr2_1:36358611-36358630 None:intergenic 45.0%
AGAGACTGAGGAAGAGAAGA+AGG - chr2_1:36358657-36358676 Msa0206690:intron 45.0%
! CTGCTGATTGCATTATCAGG+TGG - chr2_1:36358806-36358825 Msa0206690:CDS 45.0%
ATGTCAGTCTCATCATCCCA+TGG + chr2_1:36358860-36358879 None:intergenic 45.0%
AGCAGTGAGATCTGTTCAGT+TGG - chr2_1:36358895-36358914 Msa0206690:intron 45.0%
GTGAGATCTGTTCAGTTGGA+AGG - chr2_1:36358899-36358918 Msa0206690:intron 45.0%
!! CAGTTGGAAGGGTTGTTTTG+GGG - chr2_1:36358911-36358930 Msa0206690:intron 45.0%
GCGACTTAATGACCCAATAG+TGG + chr2_1:36359132-36359151 None:intergenic 45.0%
GGGACTTATTGACCCAATAG+TGG + chr2_1:36359320-36359339 None:intergenic 45.0%
GTACCCAACAGGAACAAGTT+TGG + chr2_1:36359539-36359558 None:intergenic 45.0%
TTCTTGATACCGTACCCAAC+AGG + chr2_1:36359550-36359569 None:intergenic 45.0%
TGTCCAGAGTTGTGACATTG+TGG - chr2_1:36359660-36359679 Msa0206690:intron 45.0%
AAGAGAGGCGAGGAGATTGA+AGG + chr2_1:36357688-36357707 None:intergenic 50.0%
TACCTGTGTTAAGAGAGGCG+AGG + chr2_1:36357698-36357717 None:intergenic 50.0%
ACGCAGTTACATCACTGGGT+AGG - chr2_1:36358145-36358164 Msa0206690:CDS 50.0%
!! CTGTAGTGGTGTTTCTGGTG+AGG - chr2_1:36358510-36358529 Msa0206690:intron 50.0%
TGTGTCAGAAACTGGAGGAG+TGG + chr2_1:36358584-36358603 None:intergenic 50.0%
GCCTTTGTGTCAGAAACTGG+AGG + chr2_1:36358589-36358608 None:intergenic 50.0%
AGAAGAAGGCAGCTGAGGTA+CGG - chr2_1:36358671-36358690 Msa0206690:intron 50.0%
AGGCCACAATGTCACAACTC+TGG + chr2_1:36359666-36359685 None:intergenic 50.0%
GACATGGAGATCATGGTAGG+AGG - chr2_1:36359809-36359828 Msa0206690:intron 50.0%
GGTGTCCTCTAACAAACCCT+GGG - chr2_1:36360035-36360054 Msa0206690:five_prime_UTR 50.0%
!! GCATTCCCAGGGTTTGTTAG+AGG + chr2_1:36360043-36360062 None:intergenic 50.0%
CTCCTCGCCTCTCTTAACAC+AGG - chr2_1:36357693-36357712 Msa0206690:three_prime_UTR 55.0%
!! GGTGTTTCTGGTGAGGGATC+TGG - chr2_1:36358517-36358536 Msa0206690:intron 55.0%
!! TGAGGGATCTGGTGTCACTG+TGG - chr2_1:36358528-36358547 Msa0206690:intron 55.0%
GCGGCCTTTGTGTCAGAAAC+TGG + chr2_1:36358592-36358611 None:intergenic 55.0%
GGAAGAGAAGAAGGCAGCTG+AGG - chr2_1:36358666-36358685 Msa0206690:intron 55.0%
GAAGAAGGCAGCTGAGGTAC+GGG - chr2_1:36358672-36358691 Msa0206690:intron 55.0%
GGGTGTCCTCTAACAAACCC+TGG - chr2_1:36360034-36360053 Msa0206690:five_prime_UTR 55.0%
CACAAAGGCCGCTGAAGCTG+AGG - chr2_1:36358600-36358619 Msa0206690:intron 60.0%
!! GCAGCAGCTGTGAAGGCATC+TGG - chr2_1:36358694-36358713 Msa0206690:intron 60.0%
GGTACGGGCAGCAGCTGTGA+AGG - chr2_1:36358687-36358706 Msa0206690:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 36357618 36360116 36357618 ID=Msa0206690;Name=Msa0206690
chr2_1 mRNA 36357618 36360116 36357618 ID=Msa0206690-mRNA-1;Parent=Msa0206690;Name=Msa0206690-mRNA-1;_AED=0.11;_eAED=0.11;_QI=109|1|1|1|0.66|0.57|7|322|231
chr2_1 exon 36357618 36357941 36357618 ID=Msa0206690-mRNA-1:exon:11907;Parent=Msa0206690-mRNA-1
chr2_1 exon 36358037 36358198 36358037 ID=Msa0206690-mRNA-1:exon:11906;Parent=Msa0206690-mRNA-1
chr2_1 exon 36358796 36358909 36358796 ID=Msa0206690-mRNA-1:exon:11905;Parent=Msa0206690-mRNA-1
chr2_1 exon 36359004 36359218 36359004 ID=Msa0206690-mRNA-1:exon:11904;Parent=Msa0206690-mRNA-1
chr2_1 exon 36359350 36359466 36359350 ID=Msa0206690-mRNA-1:exon:11903;Parent=Msa0206690-mRNA-1
chr2_1 exon 36359572 36359669 36359572 ID=Msa0206690-mRNA-1:exon:11902;Parent=Msa0206690-mRNA-1
chr2_1 exon 36360020 36360116 36360020 ID=Msa0206690-mRNA-1:exon:11901;Parent=Msa0206690-mRNA-1
chr2_1 five_prime_UTR 36360020 36360116 36360020 ID=Msa0206690-mRNA-1:five_prime_utr;Parent=Msa0206690-mRNA-1
chr2_1 five_prime_UTR 36359658 36359669 36359658 ID=Msa0206690-mRNA-1:five_prime_utr;Parent=Msa0206690-mRNA-1
chr2_1 CDS 36359572 36359657 36359572 ID=Msa0206690-mRNA-1:cds;Parent=Msa0206690-mRNA-1
chr2_1 CDS 36359350 36359466 36359350 ID=Msa0206690-mRNA-1:cds;Parent=Msa0206690-mRNA-1
chr2_1 CDS 36359004 36359218 36359004 ID=Msa0206690-mRNA-1:cds;Parent=Msa0206690-mRNA-1
chr2_1 CDS 36358796 36358909 36358796 ID=Msa0206690-mRNA-1:cds;Parent=Msa0206690-mRNA-1
chr2_1 CDS 36358037 36358198 36358037 ID=Msa0206690-mRNA-1:cds;Parent=Msa0206690-mRNA-1
chr2_1 CDS 36357940 36357941 36357940 ID=Msa0206690-mRNA-1:cds;Parent=Msa0206690-mRNA-1
chr2_1 three_prime_UTR 36357618 36357939 36357618 ID=Msa0206690-mRNA-1:three_prime_utr;Parent=Msa0206690-mRNA-1
Gene Sequence

>Msa0206690

ATGGCAGTTACACTCTATAACCTTAAGGCTGAATCTGGGTTGAAAAAGCTTGATGAGTATCTTCTTACACGCAGTTACATCACTGGGTACCAAGCTTCAAAGGATGACATCACTGTTTATGCAGCTTTGCCATCAGTTCCATCATATGAATATGGGAATGTTGCTAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTGCTGGTGTTTCTGGTGAGGGATCTGGTGTCACTGTGGAATCTTCTCTTGTGGCGGAAGAGACTGTTGCCACTCCTCCAGTTTCTGACACAAAGGCCGCTGAAGCTGAGGATGAAGATGATGACGATGTTGATTTGTTTGGTGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAGGTACGGGCAGCAGCTGTGAAGGCATCTGGCAAAAAGAAAGAGAGTGGGAAATCATCTGTATTGTTGGATGTGAAGCCATGGGATGATGAGACTGACATGAAGAAGCTTGAAGAAGCAGTGAGATCTGTTCAGTTGGAAGGGTTGTTTTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGTATCAAGAAACTTCAAATTATGCTTACTATTGTGGATGATCTTGTTTCCGTTGACAATATGGTTGAGGATTATCTTACTGTTGAACCCATCAATGAGTATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATCTAA

Protein sequence

>Msa0206690

MAVTLYNLKAESGLKKLDEYLLTRSYITGYQASKDDITVYAALPSVPSYEYGNVARWYKHIDALLRIAGVSGEGSGVTVESSLVAEETVATPPVSDTKAAEAEDEDDDDVDLFGEETEEEKKAAEVRAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQLEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKI*