AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0794050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794050 MtrunA17_Chr5g0395041 98.853 436 5 0 1 436 1 436 0.0 896
Msa0794050 MtrunA17_Chr3g0127861 43.256 430 224 8 12 434 1 417 2.20e-120 357
Msa0794050 MtrunA17_Chr1g0189151 42.993 421 199 8 17 435 9 390 1.05e-116 347
Msa0794050 MtrunA17_Chr4g0000091 29.018 224 150 4 126 347 62 278 8.77e-32 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794050 AT4G14500.1 66.364 440 137 6 1 436 1 433 0.0 596
Msa0794050 AT3G23080.1 64.965 431 132 6 9 436 5 419 0.0 560
Msa0794050 AT3G23080.2 64.356 404 125 6 36 436 1 388 0.0 514
Msa0794050 AT3G23080.3 64.356 404 125 6 36 436 1 388 0.0 514
Msa0794050 AT1G64720.1 44.096 415 181 6 21 435 17 380 1.18e-120 357
Msa0794050 AT5G54170.1 45.327 428 213 6 23 434 6 428 1.94e-120 358
Msa0794050 AT4G14500.2 60.932 279 102 4 1 274 1 277 1.56e-116 343
Msa0794050 AT3G13062.1 29.934 304 189 9 136 431 84 371 1.21e-35 136
Msa0794050 AT3G13062.2 31.250 304 185 10 136 431 84 371 2.49e-35 136
Msa0794050 AT3G13062.3 29.167 312 189 9 136 431 84 379 3.10e-34 132
Msa0794050 AT1G55960.1 31.727 249 156 6 128 369 75 316 5.15e-30 120
Msa0794050 AT1G55960.2 28.112 249 140 7 128 369 75 291 3.49e-18 86.3

Find 153 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCTTTGTATTGCATATT+TGG 0.148571 5_3:+5856651 None:intergenic
TGGGACTGTTGCTGTGGTTT+TGG 0.168770 5_3:-5855135 Msa0794050:CDS
CCTAACTTTGCAACATCTTT+TGG 0.178743 5_3:+5855404 None:intergenic
AATGACCGACTCAGACTTTC+AGG 0.179580 5_3:+5854775 None:intergenic
AGTTAGTGAGGGATTTCTTC+TGG 0.188486 5_3:-5856285 Msa0794050:CDS
ATCTTCCGAATGTTGATTAA+TGG 0.204041 5_3:+5855015 None:intergenic
TTTGATTTGAATTTCAATTA+TGG 0.231058 5_3:-5858810 Msa0794050:exon
TTCCCGATCACTGCAGAAAA+AGG 0.234946 5_3:+5856081 None:intergenic
ATATTGTACAACTCTGTTAA+AGG 0.261407 5_3:+5854808 None:intergenic
AATTGTTCACTGGATTAAAA+AGG 0.263893 5_3:-5856182 Msa0794050:intron
CCAAAAGATGTTGCAAAGTT+AGG 0.281442 5_3:-5855404 Msa0794050:CDS
GGAGCAAGTTTCGTTTCTTA+TGG 0.297226 5_3:-5858619 Msa0794050:CDS
TACAGTTACAAAGGCTGATT+TGG 0.308237 5_3:-5856745 Msa0794050:CDS
GGATTATTTATTCGATGTTA+TGG 0.311579 5_3:-5858786 Msa0794050:CDS
ATACATTAGGTCCGGTGATA+TGG 0.313982 5_3:-5856787 Msa0794050:intron
GCATTCGATAGTGATAAATA+TGG 0.315144 5_3:+5854971 None:intergenic
ACAACCAGGCTTTCTTCTAA+TGG 0.315169 5_3:-5855266 Msa0794050:CDS
AATTAAGATTTGTTATAGTT+TGG 0.320035 5_3:+5859075 None:intergenic
TGCTATGTGCGGTTCCGATT+TGG 0.329919 5_3:-5858718 Msa0794050:CDS
TCTCTATTTGTCGCAGATAT+TGG 0.336013 5_3:-5858535 Msa0794050:CDS
TGGAAACTTGCATTCGTTAG+AGG 0.346382 5_3:-5855246 Msa0794050:CDS
AAAGTAGAGGTCTACGCGTC+TGG 0.348134 5_3:+5855616 None:intergenic
CATCTTCTTCATCTTCTTGA+AGG 0.364952 5_3:-5856720 Msa0794050:CDS
GATTGGAAGTGGGTGGCCTT+AGG 0.367105 5_3:-5855158 Msa0794050:CDS
CGAGCATTGTTGTTGGGAGC+AGG 0.370322 5_3:-5855089 Msa0794050:CDS
GTTAGTGAGGGATTTCTTCT+GGG 0.373539 5_3:-5856284 Msa0794050:CDS
ATATTATTGCTCGAAGGATT+TGG 0.373822 5_3:-5856057 Msa0794050:CDS
GAACGTTGACATTAAATAAC+AGG 0.381414 5_3:+5854714 None:intergenic
TGGACGGTTCCGCCGGGATT+CGG 0.387516 5_3:-5858599 Msa0794050:CDS
TTGGAGGAATGCCCTCATAA+TGG 0.394374 5_3:-5856211 Msa0794050:CDS
AATCTGTCGGGCATTGTTGA+TGG 0.394962 5_3:+5855193 None:intergenic
GTTAGAGGATGCGTCTTTGA+TGG 0.400725 5_3:-5855231 Msa0794050:CDS
TTTGTCGAGATGTGCGTTGA+TGG 0.403304 5_3:-5855297 Msa0794050:CDS
GATTCGGTGCTCGCCGTCTC+TGG 0.407752 5_3:-5858583 Msa0794050:CDS
ACGCTACCAAACACGCTTCT+CGG 0.411331 5_3:-5858445 Msa0794050:intron
AATGCGCGATGAATCAATAA+AGG 0.413987 5_3:+5854903 None:intergenic
GACTTCTCTTCATCGGTCTT+CGG 0.414196 5_3:-5858640 Msa0794050:CDS
GGCGTCATCAGAACACGAAT+TGG 0.416015 5_3:+5858472 None:intergenic
TGCGAGCATAGGATCCCATT+TGG 0.417922 5_3:+5856246 None:intergenic
CCATGTCTTCGTGATGCAAA+AGG 0.428688 5_3:+5855432 None:intergenic
TTTCTTATGGACGGTTCCGC+CGG 0.430105 5_3:-5858606 Msa0794050:CDS
TGGAGGAATGCCCTCATAAT+GGG 0.431673 5_3:-5856210 Msa0794050:CDS
GTAGGGCGAGCATTGTTGTT+GGG 0.436511 5_3:-5855095 Msa0794050:CDS
ACAATTGATGTCCCATTATG+AGG 0.437523 5_3:+5856199 None:intergenic
CATCTTCTTGAAGGGAAAGA+TGG 0.441427 5_3:-5856711 Msa0794050:CDS
ATTAGTGACCGGAGGGTGTA+AGG 0.442890 5_3:-5859115 Msa0794050:five_prime_UTR
ATCATGACCGCAAGCCAAAT+CGG 0.444905 5_3:+5858704 None:intergenic
GAATTACCGAGAAGCGTGTT+TGG 0.447476 5_3:+5858439 None:intergenic
AGGCCACCCACTTCCAATCC+AGG 0.453527 5_3:+5855162 None:intergenic
TATGAAGAAACCTTCAATAA+CGG 0.462966 5_3:-5858759 Msa0794050:CDS
TGGAAGTGGGTGGCCTTAGG+TGG 0.465831 5_3:-5855155 Msa0794050:CDS
AGATTGGTCACGGCCTGGAT+TGG 0.468477 5_3:-5855175 Msa0794050:CDS
TCATCCAACGCAACATAGAA+AGG 0.470619 5_3:+5858967 None:intergenic
ATGTTCCATTAATCAACATT+CGG 0.473896 5_3:-5855020 Msa0794050:three_prime_UTR
ATTTGGCTTGCGGTCATGAT+CGG 0.474486 5_3:-5858701 Msa0794050:CDS
GTCACGGCCTGGATTGGAAG+TGG 0.475906 5_3:-5855169 Msa0794050:CDS
ACGAATGTTTCCGTTATTGA+AGG 0.481101 5_3:+5858749 None:intergenic
GTGGAATCTCGCAAAGGAGA+TGG 0.484870 5_3:-5855479 Msa0794050:CDS
ATCAACAATGCCCGACAGAT+TGG 0.485079 5_3:-5855191 Msa0794050:CDS
GTTTGGTGATCGGTTGGTCA+TGG 0.485828 5_3:-5858679 Msa0794050:CDS
TTCTATGTTGCGTTGGATGA+AGG 0.487083 5_3:-5858964 Msa0794050:five_prime_UTR
GATGGAAGAAGAAGGTGGAT+AGG 0.487443 5_3:-5858942 Msa0794050:five_prime_UTR
TGCACGGAGATGAGAGATCT+AGG 0.488954 5_3:-5855057 Msa0794050:exon
AGACGGCGAGCACCGAATCC+CGG 0.489608 5_3:+5858587 None:intergenic
GCGAGCATAGGATCCCATTT+GGG 0.491899 5_3:+5856247 None:intergenic
GAGATCTAGGATCTATTCAA+TGG 0.495245 5_3:-5855044 Msa0794050:three_prime_UTR
TGACAGCTCCCCACATTCCA+TGG 0.497311 5_3:+5855375 None:intergenic
TGCGGTTCCGATTTGGCTTG+CGG 0.503029 5_3:-5858711 Msa0794050:CDS
GTCATGATCGGTTTGGTGAT+CGG 0.504723 5_3:-5858689 Msa0794050:CDS
AGTAGGGCGAGCATTGTTGT+TGG 0.504978 5_3:-5855096 Msa0794050:CDS
ATGGGACATCAATTGTTCAC+TGG 0.510323 5_3:-5856192 Msa0794050:CDS
CATTCGATAGTGATAAATAT+GGG 0.515889 5_3:+5854972 None:intergenic
TATTGCTCGAAGGATTTGGC+AGG 0.516863 5_3:-5856053 Msa0794050:CDS
GCTTGCGGTCATGATCGGTT+TGG 0.517226 5_3:-5858696 Msa0794050:CDS
CAAATATGCAATACAAAGCT+TGG 0.518060 5_3:-5856650 Msa0794050:CDS
CAAGTTTCGTTTCTTATGGA+CGG 0.518083 5_3:-5858615 Msa0794050:CDS
TCTAGTTGGGTAATCAAACC+TGG 0.518454 5_3:-5855593 Msa0794050:intron
TGATCGGTTTGGTGATCGGT+TGG 0.518750 5_3:-5858685 Msa0794050:CDS
TTGGAGGGCGTAGAGAGAGG+GGG 0.519345 5_3:-5854838 Msa0794050:three_prime_UTR
GGAAGTGGGTGGCCTTAGGT+GGG 0.520331 5_3:-5855154 Msa0794050:CDS
GTTTCCATTAGAAGAAAGCC+TGG 0.520462 5_3:+5855262 None:intergenic
TAGGAGTTCGCCATGGAATG+TGG 0.521492 5_3:-5855385 Msa0794050:CDS
CGCACACTGCAAAGTGTTGG+AGG 0.521745 5_3:-5856227 Msa0794050:CDS
GAGCATTGTTGTTGGGAGCA+GGG 0.522764 5_3:-5855088 Msa0794050:CDS
ATCTTCTTCATCTTCTTGAA+GGG 0.522948 5_3:-5856719 Msa0794050:CDS
GATTTGAATTTCAATTATGG+AGG 0.524637 5_3:-5858807 Msa0794050:exon
GGAAAGATGGAGAGATTGAC+TGG 0.525971 5_3:-5856698 Msa0794050:CDS
CATCCAACGCAACATAGAAA+GGG 0.527024 5_3:+5858968 None:intergenic
TGGAATCTCGCAAAGGAGAT+GGG 0.527938 5_3:-5855478 Msa0794050:CDS
TCATGGCGTCCACGGTGGAC+CGG 0.529717 5_3:-5858662 Msa0794050:CDS
ATCCCCTTTCTATGTTGCGT+TGG 0.535186 5_3:-5858971 Msa0794050:five_prime_UTR
CATGTCTTCGTGATGCAAAA+GGG 0.535250 5_3:+5855433 None:intergenic
TGAGAGCATACCAGAATGCT+AGG 0.537126 5_3:-5855334 Msa0794050:CDS
GGTATACACAGTGGTGCAGT+AGG 0.538233 5_3:-5855113 Msa0794050:CDS
CCGACAGATTGGTCACGGCC+TGG 0.540884 5_3:-5855180 Msa0794050:CDS
GCTCGAAGGATTTGGCAGGC+TGG 0.543160 5_3:-5856049 Msa0794050:CDS
TCGGTTGGTCATGGCGTCCA+CGG 0.546920 5_3:-5858670 Msa0794050:CDS
AAGTAGAGGTCTACGCGTCT+GGG 0.548459 5_3:+5855617 None:intergenic
CTTAGGTGGGACTGTTGCTG+TGG 0.550839 5_3:-5855141 Msa0794050:CDS
TCACGGCCTGGATTGGAAGT+GGG 0.553226 5_3:-5855168 Msa0794050:CDS
GCTCGCACACTGCAAAGTGT+TGG 0.555461 5_3:-5856230 Msa0794050:CDS
AAGAAATCCCTCACTAACTC+AGG 0.556254 5_3:+5856289 None:intergenic
ACTTTGCAGTGTGCGAGCAT+AGG 0.560803 5_3:+5856235 None:intergenic
TCAGAACACGAATTGGAAGA+AGG 0.560879 5_3:+5858479 None:intergenic
AGGAGTTCGCCATGGAATGT+GGG 0.565387 5_3:-5855384 Msa0794050:CDS
GTCTACAACCTTACACCCTC+CGG 0.567958 5_3:+5859107 None:intergenic
CCAGGCCGTGACCAATCTGT+CGG 0.568274 5_3:+5855180 None:intergenic
ATGACCGACTCAGACTTTCA+GGG 0.570135 5_3:+5854776 None:intergenic
TGCTTATATTAGTGACCGGA+GGG 0.576581 5_3:-5859122 Msa0794050:five_prime_UTR
AGCGTGTTTGGTAGCGTCGG+TGG 0.579757 5_3:+5858451 None:intergenic
TGAAGGATGGAAGAAGAAGG+TGG 0.582655 5_3:-5858947 Msa0794050:five_prime_UTR
CACAGCAACAGTCCCACCTA+AGG 0.583165 5_3:+5855142 None:intergenic
CAATTGATGTCCCATTATGA+GGG 0.583701 5_3:+5856200 None:intergenic
GATATACGGGGACACGTGGT+GGG 0.583920 5_3:+5859015 None:intergenic
GGATGAAGGATGGAAGAAGA+AGG 0.585871 5_3:-5858950 Msa0794050:five_prime_UTR
TGCGTCTTTGATGGAAGAGA+GGG 0.591648 5_3:-5855222 Msa0794050:CDS
ATGCAACTCCTGAGTTAGTG+AGG 0.591962 5_3:-5856297 Msa0794050:CDS
AGACAAGGATACAGTTACAA+AGG 0.592293 5_3:-5856754 Msa0794050:CDS
TTTGGAGGGCGTAGAGAGAG+GGG 0.595858 5_3:-5854839 Msa0794050:three_prime_UTR
CTTCAAATACAGTTCTACTA+CGG 0.596069 5_3:+5856320 None:intergenic
TGGGCAGTTGTCTGCATGCG+AGG 0.601567 5_3:-5855459 Msa0794050:CDS
ATGTTGCGTTGGATGAAGGA+TGG 0.603610 5_3:-5858960 Msa0794050:five_prime_UTR
CGGCCTGGATTGGAAGTGGG+TGG 0.605735 5_3:-5855165 Msa0794050:CDS
AAGACCGATGAAGAGAAGTC+CGG 0.606267 5_3:+5858643 None:intergenic
CGGTGAACGCTAACCAGAGA+CGG 0.606502 5_3:+5858570 None:intergenic
ATGCGTCTTTGATGGAAGAG+AGG 0.608772 5_3:-5855223 Msa0794050:CDS
CAGTGATATACGGGGACACG+TGG 0.609051 5_3:+5859011 None:intergenic
TGGGATATTTACCGTTGATG+TGG 0.610794 5_3:+5859034 None:intergenic
TGCATACTACTGTGTGACAA+AGG 0.612553 5_3:-5856023 Msa0794050:intron
TTGCTTATATTAGTGACCGG+AGG 0.617517 5_3:-5859123 Msa0794050:five_prime_UTR
AATAGAGAAAGCAGAAAGAG+CGG 0.618635 5_3:+5858550 None:intergenic
GGGAATATATTATTGCTCGA+AGG 0.619326 5_3:-5856063 Msa0794050:CDS
AATTAATCTAACCACATCAA+CGG 0.621572 5_3:-5859045 Msa0794050:five_prime_UTR
TGGACCGGACTTCTCTTCAT+CGG 0.622743 5_3:-5858647 Msa0794050:CDS
TCTCTCGTCAGCCATATCAC+CGG 0.623742 5_3:+5856776 None:intergenic
TGCAACTCCTGAGTTAGTGA+GGG 0.625852 5_3:-5856296 Msa0794050:CDS
TGACCCCTGAAAGTCTGAGT+CGG 0.629319 5_3:-5854780 Msa0794050:three_prime_UTR
GAGCAGGGCATAGATTTGCA+CGG 0.635579 5_3:-5855073 Msa0794050:CDS
AGAAGCGTGTTTGGTAGCGT+CGG 0.637843 5_3:+5858448 None:intergenic
TTACCCAACTAGAAAAGTAG+AGG 0.644640 5_3:+5855603 None:intergenic
GCTGTCAAGAAATTGCACTC+TGG 0.647856 5_3:-5855359 Msa0794050:CDS
AATGCCCGACAGATTGGTCA+CGG 0.651595 5_3:-5855185 Msa0794050:CDS
ATCCAACGCAACATAGAAAG+GGG 0.653159 5_3:+5858969 None:intergenic
GGAGTTCGCCATGGAATGTG+GGG 0.655861 5_3:-5855383 Msa0794050:CDS
TGACCGACTCAGACTTTCAG+GGG 0.667315 5_3:+5854777 None:intergenic
TGATGGCAAGTAAAACAACC+AGG 0.673260 5_3:-5855280 Msa0794050:CDS
AGCTTGGCGTTATGACTCTG+AGG 0.673296 5_3:-5856634 Msa0794050:intron
TATGGCTGACGAGAGAGACA+AGG 0.679529 5_3:-5856769 Msa0794050:CDS
GTATACACAGTGGTGCAGTA+GGG 0.686841 5_3:-5855112 Msa0794050:CDS
GCAAAGTTAGGAGTTCGCCA+TGG 0.689467 5_3:-5855392 Msa0794050:CDS
GTTGGTCATGGCGTCCACGG+TGG 0.693217 5_3:-5858667 Msa0794050:CDS
GATGCAGTGGAATCTCGCAA+AGG 0.695128 5_3:-5855485 Msa0794050:intron
AAGAGAAGTCCGGTCCACCG+TGG 0.715281 5_3:+5858653 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTATTGAAATTTATC+TGG - chr5_3:5855465-5855484 Msa0794050:CDS 10.0%
!!! AATTAAGATTTGTTATAGTT+TGG + chr5_3:5854763-5854782 None:intergenic 15.0%
!!! TTTGATTTGAATTTCAATTA+TGG - chr5_3:5855025-5855044 Msa0794050:three_prime_UTR 15.0%
!! TGAAATATATATAATGTATC+AGG - chr5_3:5855501-5855520 Msa0794050:intron 15.0%
!!! TAGACTATATATAATTTTGT+TGG - chr5_3:5855962-5855981 Msa0794050:intron 15.0%
!!! AGACTATATATAATTTTGTT+GGG - chr5_3:5855963-5855982 Msa0794050:intron 15.0%
!! TACAACATTAACTATTTATT+TGG + chr5_3:5857687-5857706 None:intergenic 15.0%
!! AAAAAGAAATATAAGAAACA+GGG + chr5_3:5858049-5858068 None:intergenic 15.0%
!! TTGGTCTAATTTCAAAAATA+AGG - chr5_3:5855319-5855338 Msa0794050:CDS 20.0%
!!! GTAATTCACTACATTATTTT+TGG - chr5_3:5855412-5855431 Msa0794050:CDS 20.0%
!!! TATACTTTTTCAGCATTTTT+AGG - chr5_3:5855560-5855579 Msa0794050:intron 20.0%
!! AGAACTTATAGTAGAAAATA+TGG - chr5_3:5855662-5855681 Msa0794050:intron 20.0%
!!! GATTTTTATTGTTGTTGTTA+AGG - chr5_3:5855903-5855922 Msa0794050:intron 20.0%
!!! TATATAATTTTGTTGGGTTA+AGG - chr5_3:5855969-5855988 Msa0794050:intron 20.0%
!! AGTATTATAACAACATAGAT+TGG + chr5_3:5856584-5856603 None:intergenic 20.0%
!!! TTTGTTATGATTTTTCTACT+TGG - chr5_3:5856769-5856788 Msa0794050:CDS 20.0%
!!! ATATTATACTGTATTTCTAG+CGG - chr5_3:5856982-5857001 Msa0794050:intron 20.0%
!! CAAAAAGAAATATAAGAAAC+AGG + chr5_3:5858050-5858069 None:intergenic 20.0%
!! AGGTTTATGAAAAATTAGAT+TGG + chr5_3:5858076-5858095 None:intergenic 20.0%
!! TATTTAATCTTCAATGTTGT+AGG - chr5_3:5858160-5858179 Msa0794050:intron 20.0%
!! ATTTAATCTTCAATGTTGTA+GGG - chr5_3:5858161-5858180 Msa0794050:intron 20.0%
!! TAGCATCAACTATTTAATAA+TGG - chr5_3:5858300-5858319 Msa0794050:intron 20.0%
!! TTTTTGCTTATATTAGTGAC+CGG - chr5_3:5854709-5854728 Msa0794050:three_prime_UTR 25.0%
! AATTAATCTAACCACATCAA+CGG - chr5_3:5854790-5854809 Msa0794050:three_prime_UTR 25.0%
!!! TTTGCTTTTTCAGTGATATA+CGG + chr5_3:5854837-5854856 None:intergenic 25.0%
! GATTTGAATTTCAATTATGG+AGG - chr5_3:5855028-5855047 Msa0794050:three_prime_UTR 25.0%
! GGATTATTTATTCGATGTTA+TGG - chr5_3:5855049-5855068 Msa0794050:exon 25.0%
! TATGAAGAAACCTTCAATAA+CGG - chr5_3:5855076-5855095 Msa0794050:CDS 25.0%
!! TGGTTTCAATTCAAGTTATT+AGG - chr5_3:5855432-5855451 Msa0794050:CDS 25.0%
!! GGTTTCAATTCAAGTTATTA+GGG - chr5_3:5855433-5855452 Msa0794050:CDS 25.0%
!! TGGTTTTTGATATAACACTA+TGG - chr5_3:5855834-5855853 Msa0794050:intron 25.0%
! AAAACACTCTTTCAAAAATG+TGG + chr5_3:5856130-5856149 None:intergenic 25.0%
! TGATACAAAATACCCTAATT+TGG - chr5_3:5856488-5856507 Msa0794050:intron 25.0%
!!! ATGAAGCGTTTTATTCATTT+TGG - chr5_3:5857009-5857028 Msa0794050:intron 25.0%
!!! GTTTTATTCATTTTGGAACT+TGG - chr5_3:5857016-5857035 Msa0794050:intron 25.0%
!! TTTTACTTCCTAGTTTAAAG+TGG - chr5_3:5857341-5857360 Msa0794050:intron 25.0%
! ACATAAATCCACTTTAAACT+AGG + chr5_3:5857352-5857371 None:intergenic 25.0%
! AATTGTTCACTGGATTAAAA+AGG - chr5_3:5857653-5857672 Msa0794050:intron 25.0%
! TTTAATCTTCAATGTTGTAG+GGG - chr5_3:5858162-5858181 Msa0794050:intron 25.0%
! ATGTTCCATTAATCAACATT+CGG - chr5_3:5858815-5858834 Msa0794050:five_prime_UTR 25.0%
! CATTCGATAGTGATAAATAT+GGG + chr5_3:5858866-5858885 None:intergenic 25.0%
! ATATTGTACAACTCTGTTAA+AGG + chr5_3:5859030-5859049 None:intergenic 25.0%
!!! TTGCTTTTTCAGTGATATAC+GGG + chr5_3:5854836-5854855 None:intergenic 30.0%
! AATGATGATGATGATGATGA+TGG + chr5_3:5854962-5854981 None:intergenic 30.0%
!! TTTTCAGCATTTTTAGGAAC+TGG - chr5_3:5855566-5855585 Msa0794050:intron 30.0%
ATATGGTACAAACTAGACTT+AGG - chr5_3:5855679-5855698 Msa0794050:intron 30.0%
AAGAGAGTAGATCAGATAAA+TGG - chr5_3:5855744-5855763 Msa0794050:intron 30.0%
AGGTAGAGAATCTATTAAGA+AGG - chr5_3:5855781-5855800 Msa0794050:intron 30.0%
! TAATGAGTTGGATAAAGACA+TGG - chr5_3:5855814-5855833 Msa0794050:intron 30.0%
!! AAGTTTTATCCCACTAAACA+GGG + chr5_3:5855883-5855902 None:intergenic 30.0%
! TATTGTTGTTGTTAAGGAAC+TGG - chr5_3:5855909-5855928 Msa0794050:intron 30.0%
AAGGAACTCAAACATTGTAT+TGG + chr5_3:5856217-5856236 None:intergenic 30.0%
! CTTTGTTTGCAAATTTGGAA+GGG + chr5_3:5856353-5856372 None:intergenic 30.0%
!! TAAGGCTTTGTTTGCAAATT+TGG + chr5_3:5856358-5856377 None:intergenic 30.0%
AAATTTGCAAACAAAGCCTT+AGG - chr5_3:5856357-5856376 Msa0794050:intron 30.0%
AATTTGCAAACAAAGCCTTA+GGG - chr5_3:5856358-5856377 Msa0794050:intron 30.0%
TACAAAATACCCTAATTTGG+AGG - chr5_3:5856491-5856510 Msa0794050:intron 30.0%
!!! TTTTGAGTTCCTCCAAATTA+GGG + chr5_3:5856503-5856522 None:intergenic 30.0%
!!! TTTTTGAGTTCCTCCAAATT+AGG + chr5_3:5856504-5856523 None:intergenic 30.0%
CTCAAAAATTGTATCACAAC+TGG - chr5_3:5856516-5856535 Msa0794050:intron 30.0%
! ATTGTATCACAACTGGATTT+TGG - chr5_3:5856523-5856542 Msa0794050:intron 30.0%
ATTAGACACACAGAAGAAAT+TGG + chr5_3:5856835-5856854 None:intergenic 30.0%
GAAGCTGATTGTCATATTTA+AGG + chr5_3:5856860-5856879 None:intergenic 30.0%
! AGCTTCTTTTTACTGTAACA+TGG - chr5_3:5856874-5856893 Msa0794050:intron 30.0%
AATTGATGTTCCTATGTAAG+TGG - chr5_3:5856929-5856948 Msa0794050:intron 30.0%
AATATATCAAACAACCATCC+AGG + chr5_3:5856967-5856986 None:intergenic 30.0%
TTGGTTATTGCACATACATT+AGG - chr5_3:5857035-5857054 Msa0794050:intron 30.0%
ATCTTCTTCATCTTCTTGAA+GGG - chr5_3:5857116-5857135 Msa0794050:intron 30.0%
! CAAGCTTTGTATTGCATATT+TGG + chr5_3:5857187-5857206 None:intergenic 30.0%
CAAATATGCAATACAAAGCT+TGG - chr5_3:5857185-5857204 Msa0794050:intron 30.0%
! TGTTCAATTTTCATCTTGTG+CGG - chr5_3:5857234-5857253 Msa0794050:intron 30.0%
TTGGATATCCTTTCTATTTG+AGG - chr5_3:5857315-5857334 Msa0794050:intron 30.0%
!! TAAAAGTGCCTCAAATAGAA+AGG + chr5_3:5857326-5857345 None:intergenic 30.0%
AATAAATCAGCATCTGATCT+TGG - chr5_3:5857463-5857482 Msa0794050:intron 30.0%
CTTCAAATACAGTTCTACTA+CGG + chr5_3:5857518-5857537 None:intergenic 30.0%
GTATTTAATGTACACTGACA+TGG - chr5_3:5857704-5857723 Msa0794050:intron 30.0%
ATATTATTGCTCGAAGGATT+TGG - chr5_3:5857778-5857797 Msa0794050:intron 30.0%
AGAAAATCCTGTTAATCTGA+AGG - chr5_3:5857930-5857949 Msa0794050:intron 30.0%
GATTATACAGTGTAAACGTA+AGG - chr5_3:5858130-5858149 Msa0794050:intron 30.0%
TTAATCTTCAATGTTGTAGG+GGG - chr5_3:5858163-5858182 Msa0794050:intron 30.0%
AATCAAACCTGGTAAGAAAT+AGG - chr5_3:5858253-5858272 Msa0794050:intron 30.0%
! ATCTTCCGAATGTTGATTAA+TGG + chr5_3:5858823-5858842 None:intergenic 30.0%
GCATTCGATAGTGATAAATA+TGG + chr5_3:5858867-5858886 None:intergenic 30.0%
! ACTATCGAATGCTAATTTTG+CGG - chr5_3:5858875-5858894 Msa0794050:five_prime_UTR 30.0%
!!! TTGTGCATTTTAGAATGCAA+AGG - chr5_3:5858954-5858973 Msa0794050:five_prime_UTR 30.0%
! CTTTTGAATGTGTAATCTGT+TGG - chr5_3:5859088-5859107 Msa0794050:five_prime_UTR 30.0%
GAACGTTGACATTAAATAAC+AGG + chr5_3:5859124-5859143 None:intergenic 30.0%
!!! TGCTTTTTCAGTGATATACG+GGG + chr5_3:5854835-5854854 None:intergenic 35.0%
!! GATGATGATGATGATGGAAA+TGG + chr5_3:5854956-5854975 None:intergenic 35.0%
ACGAATGTTTCCGTTATTGA+AGG + chr5_3:5855089-5855108 None:intergenic 35.0%
CAAGTTTCGTTTCTTATGGA+CGG - chr5_3:5855220-5855239 Msa0794050:CDS 35.0%
AATAGAGAAAGCAGAAAGAG+CGG + chr5_3:5855288-5855307 None:intergenic 35.0%
TCTCTATTTGTCGCAGATAT+TGG - chr5_3:5855300-5855319 Msa0794050:CDS 35.0%
! CAAAAATAAGGAGAAAGTGC+TGG - chr5_3:5855331-5855350 Msa0794050:CDS 35.0%
!! TGTCTAGTATTGACATGTGA+TGG - chr5_3:5855526-5855545 Msa0794050:intron 35.0%
! TAGGAACTGGTTTATATGTG+TGG - chr5_3:5855579-5855598 Msa0794050:intron 35.0%
ATTAGAGAGATAGAGAGAGT+TGG - chr5_3:5855636-5855655 Msa0794050:CDS 35.0%
TTAGAGAGATAGAGAGAGTT+GGG - chr5_3:5855637-5855656 Msa0794050:CDS 35.0%
AAACTAGACTTAGGTGGTTT+GGG - chr5_3:5855688-5855707 Msa0794050:intron 35.0%
CTCTTTACTACAGAATCCAA+AGG + chr5_3:5855729-5855748 None:intergenic 35.0%
AAATGGAGTCAAATCACTAG+AGG - chr5_3:5855761-5855780 Msa0794050:intron 35.0%
GGATCTAGAGATTAATGAGT+TGG - chr5_3:5855802-5855821 Msa0794050:intron 35.0%
!! CAAGTTTTATCCCACTAAAC+AGG + chr5_3:5855884-5855903 None:intergenic 35.0%
! TTTTTACTTCGCTGCCTTTT+AGG - chr5_3:5856030-5856049 Msa0794050:CDS 35.0%
ACTCTCAAACAAAGCCTAAA+AGG + chr5_3:5856047-5856066 None:intergenic 35.0%
!! GCTTTGTTTGAGAGTTTGAA+GGG - chr5_3:5856052-5856071 Msa0794050:CDS 35.0%
! CTTTGTTTGAGAGTTTGAAG+GGG - chr5_3:5856053-5856072 Msa0794050:CDS 35.0%
! TGTTTGAGTTCCTTCAAAGT+AGG - chr5_3:5856223-5856242 Msa0794050:CDS 35.0%
! GTTTGAGTTCCTTCAAAGTA+GGG - chr5_3:5856224-5856243 Msa0794050:CDS 35.0%
! TTTGAGTTCCTTCAAAGTAG+GGG - chr5_3:5856225-5856244 Msa0794050:CDS 35.0%
TTTGGAAAAAAGGAAGAAGC+AGG + chr5_3:5856315-5856334 None:intergenic 35.0%
TTTGCAAATTTGGAAGGGAA+GGG + chr5_3:5856348-5856367 None:intergenic 35.0%
!! GCTTTGTTTGCAAATTTGGA+AGG + chr5_3:5856354-5856373 None:intergenic 35.0%
TCTGTTTGAGAGTTTAGGAA+GGG - chr5_3:5856381-5856400 Msa0794050:intron 35.0%
! TATCACAACTGGATTTTGGA+GGG - chr5_3:5856527-5856546 Msa0794050:intron 35.0%
AGATCCTACACATAGAATCA+CGG + chr5_3:5856808-5856827 None:intergenic 35.0%
TATTGCACATACATTAGGTC+CGG - chr5_3:5857040-5857059 Msa0794050:intron 35.0%
AGACAAGGATACAGTTACAA+AGG - chr5_3:5857081-5857100 Msa0794050:intron 35.0%
TACAGTTACAAAGGCTGATT+TGG - chr5_3:5857090-5857109 Msa0794050:intron 35.0%
CATCTTCTTCATCTTCTTGA+AGG - chr5_3:5857115-5857134 Msa0794050:intron 35.0%
! GATTGACTGGCAAAGTTTTA+TGG - chr5_3:5857150-5857169 Msa0794050:intron 35.0%
!! ACTGGCAAAGTTTTATGGAA+AGG - chr5_3:5857155-5857174 Msa0794050:intron 35.0%
TTCCATATTTGACACCCAAA+AGG - chr5_3:5857384-5857403 Msa0794050:intron 35.0%
! GACTATGTAATGAGCCTTTT+GGG + chr5_3:5857401-5857420 None:intergenic 35.0%
! TGACTATGTAATGAGCCTTT+TGG + chr5_3:5857402-5857421 None:intergenic 35.0%
! ATGATGATTTTCGTCCCAAA+TGG - chr5_3:5857574-5857593 Msa0794050:intron 35.0%
! TGATGATTTTCGTCCCAAAT+GGG - chr5_3:5857575-5857594 Msa0794050:intron 35.0%
CAATTGATGTCCCATTATGA+GGG + chr5_3:5857638-5857657 None:intergenic 35.0%
ACAATTGATGTCCCATTATG+AGG + chr5_3:5857639-5857658 None:intergenic 35.0%
GGGAATATATTATTGCTCGA+AGG - chr5_3:5857772-5857791 Msa0794050:intron 35.0%
TTATCTCGTTTCTTTCCCAA+TGG - chr5_3:5857879-5857898 Msa0794050:intron 35.0%
!! CTTTTCTAGTGACAGAAGAA+TGG + chr5_3:5857912-5857931 None:intergenic 35.0%
! TTTTCTGACAACACATACAC+AGG + chr5_3:5858096-5858115 None:intergenic 35.0%
!! TAGACCTCTACTTTTCTAGT+TGG - chr5_3:5858228-5858247 Msa0794050:intron 35.0%
!!! AGACCTCTACTTTTCTAGTT+GGG - chr5_3:5858229-5858248 Msa0794050:intron 35.0%
TTACCCAACTAGAAAAGTAG+AGG + chr5_3:5858235-5858254 None:intergenic 35.0%
! AACTTTGCCTATTTCTTACC+AGG + chr5_3:5858263-5858282 None:intergenic 35.0%
! CCTAACTTTGCAACATCTTT+TGG + chr5_3:5858434-5858453 None:intergenic 35.0%
CCAAAAGATGTTGCAAAGTT+AGG - chr5_3:5858431-5858450 Msa0794050:intron 35.0%
! GAGATCTAGGATCTATTCAA+TGG - chr5_3:5858791-5858810 Msa0794050:CDS 35.0%
AATGCGCGATGAATCAATAA+AGG + chr5_3:5858935-5858954 None:intergenic 35.0%
TTGCTTATATTAGTGACCGG+AGG - chr5_3:5854712-5854731 Msa0794050:three_prime_UTR 40.0%
TGCTTATATTAGTGACCGGA+GGG - chr5_3:5854713-5854732 Msa0794050:three_prime_UTR 40.0%
TGGGATATTTACCGTTGATG+TGG + chr5_3:5854804-5854823 None:intergenic 40.0%
ATCCAACGCAACATAGAAAG+GGG + chr5_3:5854869-5854888 None:intergenic 40.0%
CATCCAACGCAACATAGAAA+GGG + chr5_3:5854870-5854889 None:intergenic 40.0%
TCATCCAACGCAACATAGAA+AGG + chr5_3:5854871-5854890 None:intergenic 40.0%
TTCTATGTTGCGTTGGATGA+AGG - chr5_3:5854871-5854890 Msa0794050:three_prime_UTR 40.0%
!! CGTCGATATTTTGCTATGTG+CGG - chr5_3:5855106-5855125 Msa0794050:CDS 40.0%
GGAGCAAGTTTCGTTTCTTA+TGG - chr5_3:5855216-5855235 Msa0794050:CDS 40.0%
TCAGAACACGAATTGGAAGA+AGG + chr5_3:5855359-5855378 None:intergenic 40.0%
TAGAGAGATAGAGAGAGTTG+GGG - chr5_3:5855638-5855657 Msa0794050:CDS 40.0%
TGGTACAAACTAGACTTAGG+TGG - chr5_3:5855682-5855701 Msa0794050:intron 40.0%
CAAACTAGACTTAGGTGGTT+TGG - chr5_3:5855687-5855706 Msa0794050:intron 40.0%
GCATGTAGAGAGATAACCTT+TGG - chr5_3:5855710-5855729 Msa0794050:intron 40.0%
!! GGCTTTGTTTGAGAGTTTGA+AGG - chr5_3:5856051-5856070 Msa0794050:CDS 40.0%
TTGAGTTCCTTCAAAGTAGG+GGG - chr5_3:5856226-5856245 Msa0794050:CDS 40.0%
TCAAAATCCCCCTACTTTGA+AGG + chr5_3:5856236-5856255 None:intergenic 40.0%
GGAATAGAAGACTTCGGAAT+GGG + chr5_3:5856287-5856306 None:intergenic 40.0%
AGGAATAGAAGACTTCGGAA+TGG + chr5_3:5856288-5856307 None:intergenic 40.0%
GTGGAAGGAATAGAAGACTT+CGG + chr5_3:5856293-5856312 None:intergenic 40.0%
GTTTGCAAATTTGGAAGGGA+AGG + chr5_3:5856349-5856368 None:intergenic 40.0%
AAACTCTCAAACAGACCCTA+AGG + chr5_3:5856376-5856395 None:intergenic 40.0%
TAGGGTCTGTTTGAGAGTTT+AGG - chr5_3:5856376-5856395 Msa0794050:intron 40.0%
GTCTGTTTGAGAGTTTAGGA+AGG - chr5_3:5856380-5856399 Msa0794050:intron 40.0%
! AAGGGAGGACTTTGAAAGAA+AGG - chr5_3:5856399-5856418 Msa0794050:intron 40.0%
! GAGGACTTTGAAAGAAAGGA+AGG - chr5_3:5856403-5856422 Msa0794050:intron 40.0%
GAAAGAAAGGAAGGATGAAG+TGG - chr5_3:5856412-5856431 Msa0794050:intron 40.0%
GATGAAGTGGAAGGAATGAA+GGG - chr5_3:5856425-5856444 Msa0794050:intron 40.0%
!!! AAGGAATGAAGGGTTTTGAG+AGG - chr5_3:5856435-5856454 Msa0794050:intron 40.0%
!!! AGGAATGAAGGGTTTTGAGA+GGG - chr5_3:5856436-5856455 Msa0794050:intron 40.0%
! GTATCACAACTGGATTTTGG+AGG - chr5_3:5856526-5856545 Msa0794050:intron 40.0%
!! AACTGGATTTTGGAGGGTTT+TGG - chr5_3:5856533-5856552 Msa0794050:intron 40.0%
!! CATACTCTAAGGCTTGGTTT+GGG + chr5_3:5856722-5856741 None:intergenic 40.0%
AATGCTGCAACCATACTCTA+AGG + chr5_3:5856733-5856752 None:intergenic 40.0%
CTAGAAGTGACCACTTACAT+AGG + chr5_3:5856942-5856961 None:intergenic 40.0%
ATACATTAGGTCCGGTGATA+TGG - chr5_3:5857048-5857067 Msa0794050:intron 40.0%
CATCTTCTTGAAGGGAAAGA+TGG - chr5_3:5857124-5857143 Msa0794050:intron 40.0%
TGCGGATATTGTCTGTAATC+TGG - chr5_3:5857252-5857271 Msa0794050:intron 40.0%
!! AGCCTTTTGGGTGTCAAATA+TGG + chr5_3:5857389-5857408 None:intergenic 40.0%
! TCTTGGAGCTTTTAACAGAC+AGG - chr5_3:5857480-5857499 Msa0794050:intron 40.0%
! CTTGGAGCTTTTAACAGACA+GGG - chr5_3:5857481-5857500 Msa0794050:intron 40.0%
! TTGGAGCTTTTAACAGACAG+GGG - chr5_3:5857482-5857501 Msa0794050:intron 40.0%
AAGAAATCCCTCACTAACTC+AGG + chr5_3:5857549-5857568 None:intergenic 40.0%
AGTTAGTGAGGGATTTCTTC+TGG - chr5_3:5857550-5857569 Msa0794050:intron 40.0%
GTTAGTGAGGGATTTCTTCT+GGG - chr5_3:5857551-5857570 Msa0794050:intron 40.0%
ATGGGACATCAATTGTTCAC+TGG - chr5_3:5857643-5857662 Msa0794050:intron 40.0%
TGCATACTACTGTGTGACAA+AGG - chr5_3:5857812-5857831 Msa0794050:intron 40.0%
TTCTAGTGACAGAAGAATGG+AGG + chr5_3:5857909-5857928 None:intergenic 40.0%
GTTAGTGCCTTCAGATTAAC+AGG + chr5_3:5857940-5857959 None:intergenic 40.0%
!! CGTTTTGGCAAACTTGGATA+GGG + chr5_3:5858191-5858210 None:intergenic 40.0%
!! TTATCGCGTTTTGGCAAACT+TGG + chr5_3:5858197-5858216 None:intergenic 40.0%
TCTAGTTGGGTAATCAAACC+TGG - chr5_3:5858242-5858261 Msa0794050:intron 40.0%
CATGTCTTCGTGATGCAAAA+GGG + chr5_3:5858405-5858424 None:intergenic 40.0%
! CTTTTGCATCACGAAGACAT+GGG - chr5_3:5858404-5858423 Msa0794050:intron 40.0%
! TTTTGCATCACGAAGACATG+GGG - chr5_3:5858405-5858424 Msa0794050:intron 40.0%
! CATCTGTTTTCCTAGCATTC+TGG + chr5_3:5858514-5858533 None:intergenic 40.0%
TGATGGCAAGTAAAACAACC+AGG - chr5_3:5858555-5858574 Msa0794050:CDS 40.0%
ACAACCAGGCTTTCTTCTAA+TGG - chr5_3:5858569-5858588 Msa0794050:CDS 40.0%
GTTTCCATTAGAAGAAAGCC+TGG + chr5_3:5858576-5858595 None:intergenic 40.0%
TGGAAACTTGCATTCGTTAG+AGG - chr5_3:5858589-5858608 Msa0794050:CDS 40.0%
!!! GCAATTACACGCCTCTTTTT+TGG - chr5_3:5858978-5858997 Msa0794050:five_prime_UTR 40.0%
!!! ATTACACGCCTCTTTTTTGG+AGG - chr5_3:5858981-5859000 Msa0794050:five_prime_UTR 40.0%
!!! TTACACGCCTCTTTTTTGGA+GGG - chr5_3:5858982-5859001 Msa0794050:five_prime_UTR 40.0%
ATCCCCTTTCTATGTTGCGT+TGG - chr5_3:5854864-5854883 Msa0794050:three_prime_UTR 45.0%
ATGTTGCGTTGGATGAAGGA+TGG - chr5_3:5854875-5854894 Msa0794050:three_prime_UTR 45.0%
GGATGAAGGATGGAAGAAGA+AGG - chr5_3:5854885-5854904 Msa0794050:three_prime_UTR 45.0%
TGAAGGATGGAAGAAGAAGG+TGG - chr5_3:5854888-5854907 Msa0794050:three_prime_UTR 45.0%
GATGGAAGAAGAAGGTGGAT+AGG - chr5_3:5854893-5854912 Msa0794050:three_prime_UTR 45.0%
ATCATGACCGCAAGCCAAAT+CGG + chr5_3:5855134-5855153 None:intergenic 45.0%
!! ATTTGGCTTGCGGTCATGAT+CGG - chr5_3:5855134-5855153 Msa0794050:CDS 45.0%
!! GTCATGATCGGTTTGGTGAT+CGG - chr5_3:5855146-5855165 Msa0794050:CDS 45.0%
AAGACCGATGAAGAGAAGTC+CGG + chr5_3:5855195-5855214 None:intergenic 45.0%
GACTTCTCTTCATCGGTCTT+CGG - chr5_3:5855195-5855214 Msa0794050:CDS 45.0%
! GAATTACCGAGAAGCGTGTT+TGG + chr5_3:5855399-5855418 None:intergenic 45.0%
TGTTTGAGAGTTTGAAGGGG+AGG - chr5_3:5856056-5856075 Msa0794050:CDS 45.0%
GTTTGAGAGTTTGAAGGGGA+GGG - chr5_3:5856057-5856076 Msa0794050:CDS 45.0%
TAGAAGACTTCGGAATGGGA+GGG + chr5_3:5856283-5856302 None:intergenic 45.0%
ATAGAAGACTTCGGAATGGG+AGG + chr5_3:5856284-5856303 None:intergenic 45.0%
AAAAGGAAGAAGCAGGTGGA+AGG + chr5_3:5856308-5856327 None:intergenic 45.0%
GGAAAAAAGGAAGAAGCAGG+TGG + chr5_3:5856312-5856331 None:intergenic 45.0%
AAATTTGGAAGGGAAGGGAG+GGG + chr5_3:5856343-5856362 None:intergenic 45.0%
CAAATTTGGAAGGGAAGGGA+GGG + chr5_3:5856344-5856363 None:intergenic 45.0%
GTTTGAGAGTTTAGGAAGGG+AGG - chr5_3:5856384-5856403 Msa0794050:intron 45.0%
GAAAGGAAGGATGAAGTGGA+AGG - chr5_3:5856416-5856435 Msa0794050:intron 45.0%
GGATGAAGTGGAAGGAATGA+AGG - chr5_3:5856424-5856443 Msa0794050:intron 45.0%
!!! GGAATGAAGGGTTTTGAGAG+GGG - chr5_3:5856437-5856456 Msa0794050:intron 45.0%
!! GATTTTGGAGGGTTTTGGTG+TGG - chr5_3:5856538-5856557 Msa0794050:intron 45.0%
AGTTTGGAGGGGAGATTAGA+GGG + chr5_3:5856699-5856718 None:intergenic 45.0%
!! TAAGGCTTGGTTTGGGAGTT+TGG + chr5_3:5856715-5856734 None:intergenic 45.0%
!! CCATACTCTAAGGCTTGGTT+TGG + chr5_3:5856723-5856742 None:intergenic 45.0%
CCAAACCAAGCCTTAGAGTA+TGG - chr5_3:5856720-5856739 Msa0794050:CDS 45.0%
!! TGCAACCATACTCTAAGGCT+TGG + chr5_3:5856728-5856747 None:intergenic 45.0%
TTCGCCGTGATTCTATGTGT+AGG - chr5_3:5856801-5856820 Msa0794050:intron 45.0%
!! AAGTGGTCACTTCTAGTTCC+TGG - chr5_3:5856946-5856965 Msa0794050:intron 45.0%
GGAAAGATGGAGAGATTGAC+TGG - chr5_3:5857137-5857156 Msa0794050:intron 45.0%
ATGCAACTCCTGAGTTAGTG+AGG - chr5_3:5857538-5857557 Msa0794050:intron 45.0%
TGCAACTCCTGAGTTAGTGA+GGG - chr5_3:5857539-5857558 Msa0794050:intron 45.0%
TTGGAGGAATGCCCTCATAA+TGG - chr5_3:5857624-5857643 Msa0794050:intron 45.0%
TGGAGGAATGCCCTCATAAT+GGG - chr5_3:5857625-5857644 Msa0794050:intron 45.0%
CTGCAGAAAAAGGGGAACTA+TGG + chr5_3:5857747-5857766 None:intergenic 45.0%
! TCCCCTTTTTCTGCAGTGAT+CGG - chr5_3:5857751-5857770 Msa0794050:intron 45.0%
TCCCGATCACTGCAGAAAAA+GGG + chr5_3:5857756-5857775 None:intergenic 45.0%
TTCCCGATCACTGCAGAAAA+AGG + chr5_3:5857757-5857776 None:intergenic 45.0%
TATTGCTCGAAGGATTTGGC+AGG - chr5_3:5857782-5857801 Msa0794050:intron 45.0%
! AAGAATGGAGGCTAGCCATT+GGG + chr5_3:5857897-5857916 None:intergenic 45.0%
!! GCGTTTTGGCAAACTTGGAT+AGG + chr5_3:5858192-5858211 None:intergenic 45.0%
AGTGTGCGAAATTGATGCAG+TGG - chr5_3:5858337-5858356 Msa0794050:intron 45.0%
TGGAATCTCGCAAAGGAGAT+GGG - chr5_3:5858357-5858376 Msa0794050:intron 45.0%
CCATGTCTTCGTGATGCAAA+AGG + chr5_3:5858406-5858425 None:intergenic 45.0%
! CCTTTTGCATCACGAAGACA+TGG - chr5_3:5858403-5858422 Msa0794050:intron 45.0%
GCTGTCAAGAAATTGCACTC+TGG - chr5_3:5858476-5858495 Msa0794050:CDS 45.0%
! TGAGAGCATACCAGAATGCT+AGG - chr5_3:5858501-5858520 Msa0794050:CDS 45.0%
TTTGTCGAGATGTGCGTTGA+TGG - chr5_3:5858538-5858557 Msa0794050:CDS 45.0%
GTTAGAGGATGCGTCTTTGA+TGG - chr5_3:5858604-5858623 Msa0794050:CDS 45.0%
ATGCGTCTTTGATGGAAGAG+AGG - chr5_3:5858612-5858631 Msa0794050:CDS 45.0%
TGCGTCTTTGATGGAAGAGA+GGG - chr5_3:5858613-5858632 Msa0794050:CDS 45.0%
! AATCTGTCGGGCATTGTTGA+TGG + chr5_3:5858645-5858664 None:intergenic 45.0%
ATCAACAATGCCCGACAGAT+TGG - chr5_3:5858644-5858663 Msa0794050:CDS 45.0%
!!! GTGGTTTTGGGTATACACAG+TGG - chr5_3:5858713-5858732 Msa0794050:CDS 45.0%
GTATACACAGTGGTGCAGTA+GGG - chr5_3:5858723-5858742 Msa0794050:CDS 45.0%
! ATGACCGACTCAGACTTTCA+GGG + chr5_3:5859062-5859081 None:intergenic 45.0%
! AATGACCGACTCAGACTTTC+AGG + chr5_3:5859063-5859082 None:intergenic 45.0%
!!! TACAAATAAATAATTTTTTT+TGG - chr5_3:5857296-5857315 Msa0794050:intron 5.0%
! ATTAGTGACCGGAGGGTGTA+AGG - chr5_3:5854720-5854739 Msa0794050:three_prime_UTR 50.0%
GTCTACAACCTTACACCCTC+CGG + chr5_3:5854731-5854750 None:intergenic 50.0%
TGCTATGTGCGGTTCCGATT+TGG - chr5_3:5855117-5855136 Msa0794050:CDS 50.0%
!! TGATCGGTTTGGTGATCGGT+TGG - chr5_3:5855150-5855169 Msa0794050:CDS 50.0%
! GTTTGGTGATCGGTTGGTCA+TGG - chr5_3:5855156-5855175 Msa0794050:CDS 50.0%
TGGACCGGACTTCTCTTCAT+CGG - chr5_3:5855188-5855207 Msa0794050:CDS 50.0%
TTTCTTATGGACGGTTCCGC+CGG - chr5_3:5855229-5855248 Msa0794050:CDS 50.0%
GGCGTCATCAGAACACGAAT+TGG + chr5_3:5855366-5855385 None:intergenic 50.0%
!! AGAAGCGTGTTTGGTAGCGT+CGG + chr5_3:5855390-5855409 None:intergenic 50.0%
ACGCTACCAAACACGCTTCT+CGG - chr5_3:5855390-5855409 Msa0794050:CDS 50.0%
ATGCAGCTGACCCTGTTTAG+TGG - chr5_3:5855870-5855889 Msa0794050:intron 50.0%
TGCAGCTGACCCTGTTTAGT+GGG - chr5_3:5855871-5855890 Msa0794050:intron 50.0%
!! AGGGGAGGGCTTTGGAAAAA+AGG + chr5_3:5856325-5856344 None:intergenic 50.0%
GCAAATTTGGAAGGGAAGGG+AGG + chr5_3:5856345-5856364 None:intergenic 50.0%
!!! ATGAAGGGTTTTGAGAGGGG+AGG - chr5_3:5856440-5856459 Msa0794050:intron 50.0%
!!! TGAAGGGTTTTGAGAGGGGA+GGG - chr5_3:5856441-5856460 Msa0794050:intron 50.0%
!! TTTTGAGAGGGGAGGGCTTT+GGG - chr5_3:5856448-5856467 Msa0794050:intron 50.0%
GTTTGGAGGGGAGATTAGAG+GGG + chr5_3:5856698-5856717 None:intergenic 50.0%
GAGTTTGGAGGGGAGATTAG+AGG + chr5_3:5856700-5856719 None:intergenic 50.0%
!! CTTGGTTTGGGAGTTTGGAG+GGG + chr5_3:5856710-5856729 None:intergenic 50.0%
!! GCTTGGTTTGGGAGTTTGGA+GGG + chr5_3:5856711-5856730 None:intergenic 50.0%
!! GGTCACTTCTAGTTCCTGGA+TGG - chr5_3:5856950-5856969 Msa0794050:intron 50.0%
TCTCTCGTCAGCCATATCAC+CGG + chr5_3:5857062-5857081 None:intergenic 50.0%
TATGGCTGACGAGAGAGACA+AGG - chr5_3:5857066-5857085 Msa0794050:intron 50.0%
AGCTTGGCGTTATGACTCTG+AGG - chr5_3:5857201-5857220 Msa0794050:intron 50.0%
GCGAGCATAGGATCCCATTT+GGG + chr5_3:5857591-5857610 None:intergenic 50.0%
TGCGAGCATAGGATCCCATT+TGG + chr5_3:5857592-5857611 None:intergenic 50.0%
ACTTTGCAGTGTGCGAGCAT+AGG + chr5_3:5857603-5857622 None:intergenic 50.0%
CCCGATCACTGCAGAAAAAG+GGG + chr5_3:5857755-5857774 None:intergenic 50.0%
! CCCCTTTTTCTGCAGTGATC+GGG - chr5_3:5857752-5857771 Msa0794050:intron 50.0%
! GAAGAATGGAGGCTAGCCAT+TGG + chr5_3:5857898-5857917 None:intergenic 50.0%
AAGTAGAGGTCTACGCGTCT+GGG + chr5_3:5858221-5858240 None:intergenic 50.0%
AAAGTAGAGGTCTACGCGTC+TGG + chr5_3:5858222-5858241 None:intergenic 50.0%
GATGCAGTGGAATCTCGCAA+AGG - chr5_3:5858350-5858369 Msa0794050:intron 50.0%
GTGGAATCTCGCAAAGGAGA+TGG - chr5_3:5858356-5858375 Msa0794050:intron 50.0%
GCAAAGTTAGGAGTTCGCCA+TGG - chr5_3:5858443-5858462 Msa0794050:intron 50.0%
TAGGAGTTCGCCATGGAATG+TGG - chr5_3:5858450-5858469 Msa0794050:CDS 50.0%
AGGAGTTCGCCATGGAATGT+GGG - chr5_3:5858451-5858470 Msa0794050:CDS 50.0%
! AATGCCCGACAGATTGGTCA+CGG - chr5_3:5858650-5858669 Msa0794050:CDS 50.0%
! TGGGACTGTTGCTGTGGTTT+TGG - chr5_3:5858700-5858719 Msa0794050:CDS 50.0%
! GGGACTGTTGCTGTGGTTTT+GGG - chr5_3:5858701-5858720 Msa0794050:CDS 50.0%
GGTATACACAGTGGTGCAGT+AGG - chr5_3:5858722-5858741 Msa0794050:CDS 50.0%
! AGTAGGGCGAGCATTGTTGT+TGG - chr5_3:5858739-5858758 Msa0794050:CDS 50.0%
! GTAGGGCGAGCATTGTTGTT+GGG - chr5_3:5858740-5858759 Msa0794050:CDS 50.0%
! GAGCATTGTTGTTGGGAGCA+GGG - chr5_3:5858747-5858766 Msa0794050:CDS 50.0%
GAGCAGGGCATAGATTTGCA+CGG - chr5_3:5858762-5858781 Msa0794050:CDS 50.0%
TGCACGGAGATGAGAGATCT+AGG - chr5_3:5858778-5858797 Msa0794050:CDS 50.0%
CTCTACGCCCTCCAAAAAAG+AGG + chr5_3:5858992-5859011 None:intergenic 50.0%
!! TTTTTGGAGGGCGTAGAGAG+AGG - chr5_3:5858994-5859013 Msa0794050:five_prime_UTR 50.0%
!! TTTTGGAGGGCGTAGAGAGA+GGG - chr5_3:5858995-5859014 Msa0794050:five_prime_UTR 50.0%
TGACCCCTGAAAGTCTGAGT+CGG - chr5_3:5859055-5859074 Msa0794050:five_prime_UTR 50.0%
! TGACCGACTCAGACTTTCAG+GGG + chr5_3:5859061-5859080 None:intergenic 50.0%
GATATACGGGGACACGTGGT+GGG + chr5_3:5854823-5854842 None:intergenic 55.0%
TGATATACGGGGACACGTGG+TGG + chr5_3:5854824-5854843 None:intergenic 55.0%
CAGTGATATACGGGGACACG+TGG + chr5_3:5854827-5854846 None:intergenic 55.0%
!! TGCGGTTCCGATTTGGCTTG+CGG - chr5_3:5855124-5855143 Msa0794050:CDS 55.0%
GCTTGCGGTCATGATCGGTT+TGG - chr5_3:5855139-5855158 Msa0794050:CDS 55.0%
TTCTTATGGACGGTTCCGCC+GGG - chr5_3:5855230-5855249 Msa0794050:CDS 55.0%
CGGTGAACGCTAACCAGAGA+CGG + chr5_3:5855268-5855287 None:intergenic 55.0%
AGAGTTTGAAGGGGAGGGTG+AGG - chr5_3:5856062-5856081 Msa0794050:CDS 55.0%
GAGTTTGAAGGGGAGGGTGA+GGG - chr5_3:5856063-5856082 Msa0794050:CDS 55.0%
! CTTTGGGGGGAGAGGAATAG+AGG - chr5_3:5856086-5856105 Msa0794050:CDS 55.0%
ACTTCGGAATGGGAGGGCTT+TGG + chr5_3:5856277-5856296 None:intergenic 55.0%
!!! GTTTTGAGAGGGGAGGGCTT+TGG - chr5_3:5856447-5856466 Msa0794050:intron 55.0%
TTTGAGAGGGGAGGGCTTTG+GGG - chr5_3:5856449-5856468 Msa0794050:intron 55.0%
!! TGGAGGGTTTTGGTGTGGCT+TGG - chr5_3:5856543-5856562 Msa0794050:intron 55.0%
!! GGCTTGGTTTGGGAGTTTGG+AGG + chr5_3:5856712-5856731 None:intergenic 55.0%
GCTCGCACACTGCAAAGTGT+TGG - chr5_3:5857605-5857624 Msa0794050:intron 55.0%
!! CGCACACTGCAAAGTGTTGG+AGG - chr5_3:5857608-5857627 Msa0794050:intron 55.0%
! CGTCTGGGCTTATCGCGTTT+TGG + chr5_3:5858206-5858225 None:intergenic 55.0%
GGAGTTCGCCATGGAATGTG+GGG - chr5_3:5858452-5858471 Msa0794050:CDS 55.0%
TGACAGCTCCCCACATTCCA+TGG + chr5_3:5858463-5858482 None:intergenic 55.0%
! AGATTGGTCACGGCCTGGAT+TGG - chr5_3:5858660-5858679 Msa0794050:CDS 55.0%
! TCACGGCCTGGATTGGAAGT+GGG - chr5_3:5858667-5858686 Msa0794050:CDS 55.0%
GATTGGAAGTGGGTGGCCTT+AGG - chr5_3:5858677-5858696 Msa0794050:CDS 55.0%
CACAGCAACAGTCCCACCTA+AGG + chr5_3:5858696-5858715 None:intergenic 55.0%
CTTAGGTGGGACTGTTGCTG+TGG - chr5_3:5858694-5858713 Msa0794050:CDS 55.0%
! CGAGCATTGTTGTTGGGAGC+AGG - chr5_3:5858746-5858765 Msa0794050:CDS 55.0%
! TTTGGAGGGCGTAGAGAGAG+GGG - chr5_3:5858996-5859015 Msa0794050:five_prime_UTR 55.0%
! TCGGTTGGTCATGGCGTCCA+CGG - chr5_3:5855165-5855184 Msa0794050:CDS 60.0%
AAGAGAAGTCCGGTCCACCG+TGG + chr5_3:5855185-5855204 None:intergenic 60.0%
!! AGCGTGTTTGGTAGCGTCGG+TGG + chr5_3:5855387-5855406 None:intergenic 60.0%
AAGGGGAGGGTGAGGGCTTT+GGG - chr5_3:5856070-5856089 Msa0794050:CDS 60.0%
!! CGGAATGGGAGGGCTTTGGA+AGG + chr5_3:5856273-5856292 None:intergenic 60.0%
TTGGAAGGGAAGGGAGGGGA+GGG + chr5_3:5856339-5856358 None:intergenic 60.0%
TTTGGAAGGGAAGGGAGGGG+AGG + chr5_3:5856340-5856359 None:intergenic 60.0%
GCTCGAAGGATTTGGCAGGC+TGG - chr5_3:5857786-5857805 Msa0794050:intron 60.0%
TGGGCAGTTGTCTGCATGCG+AGG - chr5_3:5858376-5858395 Msa0794050:intron 60.0%
CAGGCCGTGACCAATCTGTC+GGG + chr5_3:5858657-5858676 None:intergenic 60.0%
CCAGGCCGTGACCAATCTGT+CGG + chr5_3:5858658-5858677 None:intergenic 60.0%
! GTCACGGCCTGGATTGGAAG+TGG - chr5_3:5858666-5858685 Msa0794050:CDS 60.0%
AGGCCACCCACTTCCAATCC+AGG + chr5_3:5858676-5858695 None:intergenic 60.0%
! TGGAAGTGGGTGGCCTTAGG+TGG - chr5_3:5858680-5858699 Msa0794050:CDS 60.0%
! GGAAGTGGGTGGCCTTAGGT+GGG - chr5_3:5858681-5858700 Msa0794050:CDS 60.0%
! TTGGAGGGCGTAGAGAGAGG+GGG - chr5_3:5858997-5859016 Msa0794050:five_prime_UTR 60.0%
GTTGGTCATGGCGTCCACGG+TGG - chr5_3:5855168-5855187 Msa0794050:CDS 65.0%
TCATGGCGTCCACGGTGGAC+CGG - chr5_3:5855173-5855192 Msa0794050:CDS 65.0%
TGGACGGTTCCGCCGGGATT+CGG - chr5_3:5855236-5855255 Msa0794050:CDS 65.0%
!! AGACGGCGAGCACCGAATCC+CGG + chr5_3:5855251-5855270 None:intergenic 65.0%
!! GATTCGGTGCTCGCCGTCTC+TGG - chr5_3:5855252-5855271 Msa0794050:CDS 65.0%
GAAGGGGAGGGTGAGGGCTT+TGG - chr5_3:5856069-5856088 Msa0794050:CDS 65.0%
AGGGGAGGGTGAGGGCTTTG+GGG - chr5_3:5856071-5856090 Msa0794050:CDS 65.0%
! CCGACAGATTGGTCACGGCC+TGG - chr5_3:5858655-5858674 Msa0794050:CDS 65.0%
! CGGCCTGGATTGGAAGTGGG+TGG - chr5_3:5858670-5858689 Msa0794050:CDS 65.0%
AGGGCGTAGAGAGAGGGGGA+TGG - chr5_3:5859001-5859020 Msa0794050:five_prime_UTR 65.0%
GGGCGTAGAGAGAGGGGGAT+GGG - chr5_3:5859002-5859021 Msa0794050:five_prime_UTR 65.0%
! GGGGAGGGTGAGGGCTTTGG+GGG - chr5_3:5856072-5856091 Msa0794050:CDS 70.0%
!! GGGAGGGTGAGGGCTTTGGG+GGG - chr5_3:5856073-5856092 Msa0794050:CDS 70.0%
!! GGTGAGGGCTTTGGGGGGAG+AGG - chr5_3:5856078-5856097 Msa0794050:CDS 70.0%
GGGAAGGGAGGGGAGGGCTT+TGG + chr5_3:5856333-5856352 None:intergenic 70.0%
!! CGGCGAGCACCGAATCCCGG+CGG + chr5_3:5855248-5855267 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 5854703 5859154 5854703 ID=Msa0794050;Name=Msa0794050
chr5_3 mRNA 5854703 5859154 5854703 ID=Msa0794050-mRNA-1;Parent=Msa0794050;Name=Msa0794050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=341|1|1|1|1|0.83|6|364|436
chr5_3 exon 5854703 5855500 5854703 ID=Msa0794050-mRNA-1:exon:2349;Parent=Msa0794050-mRNA-1
chr5_3 exon 5855594 5855675 5855594 ID=Msa0794050-mRNA-1:exon:2348;Parent=Msa0794050-mRNA-1
chr5_3 exon 5856024 5856107 5856024 ID=Msa0794050-mRNA-1:exon:2347;Parent=Msa0794050-mRNA-1
chr5_3 exon 5856183 5856359 5856183 ID=Msa0794050-mRNA-1:exon:2346;Parent=Msa0794050-mRNA-1
chr5_3 exon 5856635 5856800 5856635 ID=Msa0794050-mRNA-1:exon:2345;Parent=Msa0794050-mRNA-1
chr5_3 exon 5858446 5859154 5858446 ID=Msa0794050-mRNA-1:exon:2344;Parent=Msa0794050-mRNA-1
chr5_3 five_prime_UTR 5858814 5859154 5858814 ID=Msa0794050-mRNA-1:five_prime_utr;Parent=Msa0794050-mRNA-1
chr5_3 CDS 5858446 5858813 5858446 ID=Msa0794050-mRNA-1:cds;Parent=Msa0794050-mRNA-1
chr5_3 CDS 5856635 5856800 5856635 ID=Msa0794050-mRNA-1:cds;Parent=Msa0794050-mRNA-1
chr5_3 CDS 5856183 5856359 5856183 ID=Msa0794050-mRNA-1:cds;Parent=Msa0794050-mRNA-1
chr5_3 CDS 5856024 5856107 5856024 ID=Msa0794050-mRNA-1:cds;Parent=Msa0794050-mRNA-1
chr5_3 CDS 5855594 5855675 5855594 ID=Msa0794050-mRNA-1:cds;Parent=Msa0794050-mRNA-1
chr5_3 CDS 5855067 5855500 5855067 ID=Msa0794050-mRNA-1:cds;Parent=Msa0794050-mRNA-1
chr5_3 three_prime_UTR 5854703 5855066 5854703 ID=Msa0794050-mRNA-1:three_prime_utr;Parent=Msa0794050-mRNA-1
Gene Sequence

>Msa0794050

ATGGAGGATTATTTATTCGATGTTATGGAGTTTATGAAGAAACCTTCAATAACGGAAACATTCGTCGATATTTTGCTATGTGCGGTTCCGATTTGGCTTGCGGTCATGATCGGTTTGGTGATCGGTTGGTCATGGCGTCCACGGTGGACCGGACTTCTCTTCATCGGTCTTCGGAGCAAGTTTCGTTTCTTATGGACGGTTCCGCCGGGATTCGGTGCTCGCCGTCTCTGGTTAGCGTTCACCGCTCTTTCTGCTTTCTCTATTTGTCGCAGATATTGGTCTAATTTCAAAAATAAGGAGAAAGTGCTGGATCCTTCTTCCAATTCGTGTTCTGATGACGCCACCGACGCTACCAAACACGCTTCTCGGTCCGGTGATATGGCTGACGAGAGAGACAAGGATACAGTTACAAAGGCTGATTTGGAACATCTTCTTCATCTTCTTGAAGGGAAAGATGGAGAGATTGACTGGCAAAGTTTTATGGAAAGGTCAACACCAAATATGCAATACAAAGCTTGGCGTTATGACTCTGAGACAGGGGCTACAGTTTACCGTAGTAGAACTGTATTTGAAGATGCAACTCCTGAGTTAGTGAGGGATTTCTTCTGGGATGATGATTTTCGTCCCAAATGGGATCCTATGCTCGCACACTGCAAAGTGTTGGAGGAATGCCCTCATAATGGGACATCAATTGTTCACTGGATTAAAAAGTTCCCCTTTTTCTGCAGTGATCGGGAATATATTATTGCTCGAAGGATTTGGCAGGCTGGAAATGCATACTACTGTGTGACAAAGGGGGTTCCCTATCCAAGTTTGCCAAAACGCGATAAGCCCAGACGCGTAGACCTCTACTTTTCTAGTTGGGTAATCAAACCTGTGGAATCTCGCAAAGGAGATGGGCAGTTGTCTGCATGCGAGGTTACCCTTTTGCATCACGAAGACATGGGGATTCCAAAAGATGTTGCAAAGTTAGGAGTTCGCCATGGAATGTGGGGAGCTGTCAAGAAATTGCACTCTGGTATGAGAGCATACCAGAATGCTAGGAAAACAGATGCTTCTTTGTCGAGATGTGCGTTGATGGCAAGTAAAACAACCAGGCTTTCTTCTAATGGAAACTTGCATTCGTTAGAGGATGCGTCTTTGATGGAAGAGAGGGAGCAAGCCATCAACAATGCCCGACAGATTGGTCACGGCCTGGATTGGAAGTGGGTGGCCTTAGGTGGGACTGTTGCTGTGGTTTTGGGTATACACAGTGGTGCAGTAGGGCGAGCATTGTTGTTGGGAGCAGGGCATAGATTTGCACGGAGATGA

Protein sequence

>Msa0794050

MEDYLFDVMEFMKKPSITETFVDILLCAVPIWLAVMIGLVIGWSWRPRWTGLLFIGLRSKFRFLWTVPPGFGARRLWLAFTALSAFSICRRYWSNFKNKEKVLDPSSNSCSDDATDATKHASRSGDMADERDKDTVTKADLEHLLHLLEGKDGEIDWQSFMERSTPNMQYKAWRYDSETGATVYRSRTVFEDATPELVRDFFWDDDFRPKWDPMLAHCKVLEECPHNGTSIVHWIKKFPFFCSDREYIIARRIWQAGNAYYCVTKGVPYPSLPKRDKPRRVDLYFSSWVIKPVESRKGDGQLSACEVTLLHHEDMGIPKDVAKLGVRHGMWGAVKKLHSGMRAYQNARKTDASLSRCALMASKTTRLSSNGNLHSLEDASLMEEREQAINNARQIGHGLDWKWVALGGTVAVVLGIHSGAVGRALLLGAGHRFARR*