Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859430 | XP_003616830.1 | 98.889 | 270 | 3 | 0 | 1 | 270 | 1 | 270 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859430 | sp|Q84JU4|IBR5_ARATH | 59.707 | 273 | 91 | 3 | 1 | 270 | 1 | 257 | 9.02e-109 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859430 | G7K7F8 | 98.889 | 270 | 3 | 0 | 1 | 270 | 1 | 270 | 0.0 | 556 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616560 | Msa0859430 | 0.832422 | 9.541231e-56 | -8.615850e-47 |
| Msa0655990 | Msa0859430 | 0.829854 | 4.078322e-55 | -8.615850e-47 |
| Msa0699920 | Msa0859430 | 0.821871 | 3.206013e-53 | -8.615850e-47 |
| Msa0781220 | Msa0859430 | 0.832068 | 1.167297e-55 | -8.615850e-47 |
| Msa0185640 | Msa0859430 | 0.814129 | 1.802550e-51 | -8.615850e-47 |
| Msa0216300 | Msa0859430 | 0.821066 | 4.918124e-53 | -8.615850e-47 |
| Msa0270440 | Msa0859430 | 0.843363 | 1.467664e-58 | -8.615850e-47 |
| Msa0309080 | Msa0859430 | 0.838166 | 3.379262e-57 | -8.615850e-47 |
| Msa0342340 | Msa0859430 | 0.805545 | 1.267729e-49 | -8.615850e-47 |
| Msa0859430 | Msa0968320 | 0.816524 | 5.291328e-52 | -8.615850e-47 |
| Msa0859430 | Msa1139240 | -0.815576 | 8.612941e-52 | -8.615850e-47 |
| Msa0859430 | Msa1168730 | 0.812641 | 3.828320e-51 | -8.615850e-47 |
| Msa0859430 | Msa1204980 | 0.800367 | 1.489822e-48 | -8.615850e-47 |
| Msa0859430 | Msa1256540 | 0.809594 | 1.751677e-50 | -8.615850e-47 |
| Msa0859430 | Msa1289830 | 0.840560 | 8.077563e-58 | -8.615850e-47 |
| Msa0859430 | Msa1296960 | 0.820633 | 6.186651e-53 | -8.615850e-47 |
| Msa0859430 | Msa1371080 | 0.822404 | 2.412304e-53 | -8.615850e-47 |
| Msa0859430 | Msa1424000 | -0.802909 | 4.485306e-49 | -8.615850e-47 |
| Msa0859430 | Msa1438270 | -0.808181 | 3.513653e-50 | -8.615850e-47 |
| Msa0859430 | Msa1444060 | 0.814352 | 1.609345e-51 | -8.615850e-47 |
| Msa0859430 | Msa1454290 | 0.825425 | 4.719758e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859430 | MtrunA17_Chr5g0438601 | 98.889 | 270 | 3 | 0 | 1 | 270 | 1 | 270 | 0.0 | 556 |
| Msa0859430 | MtrunA17_Chr4g0065631 | 33.333 | 132 | 82 | 2 | 55 | 180 | 45 | 176 | 7.36e-18 | 79.3 |
| Msa0859430 | MtrunA17_Chr3g0123501 | 33.577 | 137 | 84 | 2 | 51 | 180 | 107 | 243 | 3.66e-14 | 72.0 |
| Msa0859430 | MtrunA17_Chr3g0131721 | 30.345 | 145 | 91 | 2 | 55 | 189 | 682 | 826 | 3.22e-13 | 69.3 |
| Msa0859430 | MtrunA17_Chr7g0222731 | 31.852 | 135 | 85 | 2 | 53 | 180 | 179 | 313 | 1.43e-12 | 67.4 |
| Msa0859430 | MtrunA17_Chr8g0385841 | 31.034 | 145 | 90 | 3 | 55 | 189 | 738 | 882 | 1.75e-12 | 67.4 |
| Msa0859430 | MtrunA17_Chr8g0381371 | 31.618 | 136 | 86 | 2 | 51 | 179 | 111 | 246 | 2.42e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0859430 | AT2G04550.1 | 59.707 | 273 | 91 | 3 | 1 | 270 | 1 | 257 | 9.17e-110 | 318 |
| Msa0859430 | AT2G04550.3 | 72.781 | 169 | 43 | 1 | 1 | 166 | 1 | 169 | 9.15e-94 | 274 |
| Msa0859430 | AT3G23610.2 | 36.620 | 142 | 83 | 3 | 47 | 182 | 51 | 191 | 2.03e-21 | 89.7 |
| Msa0859430 | AT3G23610.4 | 36.620 | 142 | 83 | 3 | 47 | 182 | 51 | 191 | 2.80e-21 | 89.4 |
| Msa0859430 | AT3G23610.5 | 36.429 | 140 | 82 | 3 | 47 | 180 | 51 | 189 | 4.45e-21 | 88.6 |
| Msa0859430 | AT3G23610.1 | 36.429 | 140 | 82 | 3 | 47 | 180 | 51 | 189 | 4.73e-21 | 88.6 |
| Msa0859430 | AT3G23610.3 | 36.429 | 140 | 82 | 3 | 47 | 180 | 51 | 189 | 1.49e-20 | 87.8 |
| Msa0859430 | AT3G06110.2 | 30.370 | 135 | 88 | 1 | 55 | 183 | 32 | 166 | 3.92e-16 | 74.3 |
| Msa0859430 | AT3G06110.3 | 30.370 | 135 | 88 | 1 | 55 | 183 | 32 | 166 | 3.92e-16 | 74.3 |
| Msa0859430 | AT3G06110.1 | 31.008 | 129 | 85 | 1 | 55 | 183 | 32 | 156 | 6.77e-16 | 73.6 |
Find 89 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGAAGCAAACCAGTTTC+TGG | 0.201283 | 5_4:-57770721 | Msa0859430:CDS |
| TTAGATGGATTTGTATTAAA+AGG | 0.231249 | 5_4:+57769337 | None:intergenic |
| ATTGAATATTTGAAGATTCT+AGG | 0.231358 | 5_4:+57773122 | None:intergenic |
| GGAGCTATATCATTTGTCTT+TGG | 0.255379 | 5_4:+57769472 | None:intergenic |
| AAAATCGTTGTTTCTTGATC+TGG | 0.267883 | 5_4:-57772800 | Msa0859430:five_prime_UTR |
| CTTGCCGGAGTTTCTTTACT+TGG | 0.311355 | 5_4:-57772616 | Msa0859430:CDS |
| ACCGGCTCCGAATGTGAAAT+TGG | 0.314708 | 5_4:+57769381 | None:intergenic |
| TTTCGTACTCCTGTAGTTGC+TGG | 0.329145 | 5_4:+57769581 | None:intergenic |
| GAGCTATATCATTTGTCTTT+GGG | 0.329474 | 5_4:+57769473 | None:intergenic |
| ACTGGTTTGCTTCCTCAAAC+TGG | 0.348361 | 5_4:+57770727 | None:intergenic |
| TTCTTAGTTATCAATCACTA+TGG | 0.355650 | 5_4:-57769115 | Msa0859430:three_prime_UTR |
| GAGGGATAAGGAGCGTGTTC+TGG | 0.388087 | 5_4:-57770240 | Msa0859430:CDS |
| TGACAAAAGTTTCCAGTTTG+AGG | 0.405689 | 5_4:-57770739 | Msa0859430:CDS |
| GAAGGGCCACATCTTAGCTT+TGG | 0.407213 | 5_4:-57769499 | Msa0859430:CDS |
| GAGGAAGCAAACCAGTTTCT+GGG | 0.413200 | 5_4:-57770720 | Msa0859430:intron |
| GAAGGAACATACCCAGAAAC+TGG | 0.418162 | 5_4:+57770709 | None:intergenic |
| AAATCGTTGTTTCTTGATCT+GGG | 0.424283 | 5_4:-57772799 | Msa0859430:five_prime_UTR |
| TCGGTAACATTAGGATTAGA+TGG | 0.430015 | 5_4:+57769322 | None:intergenic |
| AGATCCATCCATCTGAATAT+CGG | 0.440613 | 5_4:+57769303 | None:intergenic |
| ATCTGAATATCGGTAACATT+AGG | 0.448518 | 5_4:+57769313 | None:intergenic |
| CGTTGTTTCTTGATCTGGGT+CGG | 0.451356 | 5_4:-57772795 | Msa0859430:five_prime_UTR |
| AGGTCCCCAGCTGTCGTGAT+TGG | 0.453254 | 5_4:-57769984 | Msa0859430:CDS |
| TCCATCCTCTAGACTTCATC+AGG | 0.453955 | 5_4:+57769958 | None:intergenic |
| GTTCTGGTTCATTGCATGTC+AGG | 0.454547 | 5_4:-57770224 | Msa0859430:CDS |
| ACCAATTTCACATTCGGAGC+CGG | 0.454900 | 5_4:-57769382 | Msa0859430:CDS |
| GTCATCTGGGAGGCAGTGAT+AGG | 0.465660 | 5_4:+57770758 | None:intergenic |
| GACATGAAACATGGCAAACT+TGG | 0.466159 | 5_4:+57769208 | None:intergenic |
| ATAGCTCCACTTCCTGCCTT+CGG | 0.468593 | 5_4:-57769457 | Msa0859430:CDS |
| AGGTAGCCAATCACGACAGC+TGG | 0.470510 | 5_4:+57769978 | None:intergenic |
| TTTGAAGAGGATCAAGAAAG+AGG | 0.474843 | 5_4:+57772916 | None:intergenic |
| GCTCCGACCAATTTCACATT+CGG | 0.479664 | 5_4:-57769388 | Msa0859430:CDS |
| CTAAGATGTGGCCCTTCTGC+AGG | 0.480040 | 5_4:+57769505 | None:intergenic |
| CGTACTCCTGTAGTTGCTGG+TGG | 0.482249 | 5_4:+57769584 | None:intergenic |
| TTGAAGAAGGTGAAGTGTGC+GGG | 0.482506 | 5_4:-57772710 | Msa0859430:CDS |
| GTGCAGCCGAAGGCAGGAAG+TGG | 0.491492 | 5_4:+57769451 | None:intergenic |
| GTTGTAGTGCAGCCGAAGGC+AGG | 0.492876 | 5_4:+57769445 | None:intergenic |
| GTTTGCCATGTTTCATGTCA+AGG | 0.500416 | 5_4:-57769204 | Msa0859430:three_prime_UTR |
| TCTGGGTCGGTTTGATAATG+AGG | 0.500463 | 5_4:-57772782 | Msa0859430:exon |
| AGAGCAATGTGAGAGGGATA+AGG | 0.504289 | 5_4:-57770252 | Msa0859430:CDS |
| TCTGCAGGTGAGAAAACAAC+AGG | 0.504322 | 5_4:+57769520 | None:intergenic |
| CAAGGTGCTATAATCATAAG+TGG | 0.505192 | 5_4:-57769186 | Msa0859430:three_prime_UTR |
| GGTGAAGTGTGCGGGATTTG+TGG | 0.508316 | 5_4:-57772702 | Msa0859430:CDS |
| GTCTGAGCTTCTCAAAACTC+AGG | 0.511241 | 5_4:-57772571 | Msa0859430:CDS |
| GAAAACCCTTGTGGTGTATG+TGG | 0.522011 | 5_4:-57772747 | Msa0859430:CDS |
| TGTGGTCATAGTGTTCCGAT+TGG | 0.524554 | 5_4:-57772684 | Msa0859430:CDS |
| AATTTGTAGCATGAAAGAAC+TGG | 0.532873 | 5_4:+57769041 | None:intergenic |
| TTGCCGGAGTTTCTTTACTT+GGG | 0.537583 | 5_4:-57772615 | Msa0859430:CDS |
| ACCTGATGAAGTCTAGAGGA+TGG | 0.538234 | 5_4:-57769959 | Msa0859430:CDS |
| GGAGCCGGTCAGAATGTCAC+TGG | 0.543766 | 5_4:-57769367 | Msa0859430:CDS |
| GGTAGCCAATCACGACAGCT+GGG | 0.549101 | 5_4:+57769979 | None:intergenic |
| GTTACCGATATTCAGATGGA+TGG | 0.550253 | 5_4:-57769307 | Msa0859430:CDS |
| TGATAATGAGGAAAAGAGAG+AGG | 0.563217 | 5_4:-57772770 | Msa0859430:exon |
| CACTATCACAAAGTTGAAGA+AGG | 0.565791 | 5_4:-57772723 | Msa0859430:CDS |
| GAAGCTATGATAATGCTTCA+CGG | 0.565846 | 5_4:-57772593 | Msa0859430:CDS |
| TCTGAGCTTCTCAAAACTCA+GGG | 0.566142 | 5_4:-57772570 | Msa0859430:CDS |
| GGTGCTCGAGAGAAAATTGA+AGG | 0.568599 | 5_4:+57769421 | None:intergenic |
| AGGTGCCCACCAGCAACTAC+AGG | 0.571587 | 5_4:-57769590 | Msa0859430:CDS |
| TCACACATAGGTGCTGCTGC+TGG | 0.580216 | 5_4:+57769269 | None:intergenic |
| GTACTCCTGTAGTTGCTGGT+GGG | 0.580399 | 5_4:+57769585 | None:intergenic |
| AGGAGTTGTAGTGCAGCCGA+AGG | 0.581121 | 5_4:+57769441 | None:intergenic |
| TAATGTTACCGATATTCAGA+TGG | 0.588439 | 5_4:-57769311 | Msa0859430:CDS |
| ACAGAGTTATCAGTGGGTAA+AGG | 0.592297 | 5_4:-57769928 | Msa0859430:CDS |
| CTTCCCAAGTAAAGAAACTC+CGG | 0.599722 | 5_4:+57772612 | None:intergenic |
| AACTCCGGCAAGATCACAGA+AGG | 0.607086 | 5_4:+57772627 | None:intergenic |
| GCTCCGAATGTGAAATTGGT+CGG | 0.607426 | 5_4:+57769385 | None:intergenic |
| CCTTCAGACAATTCAACCGC+AGG | 0.612587 | 5_4:+57769897 | None:intergenic |
| ACTTCCAGTGACATTCTGAC+CGG | 0.612829 | 5_4:+57769363 | None:intergenic |
| GAAATTGGTCGGAGCTATGT+CGG | 0.613069 | 5_4:+57769396 | None:intergenic |
| GATAATGAGGAAAAGAGAGA+GGG | 0.619301 | 5_4:-57772769 | Msa0859430:exon |
| CAAGTAGCTTAATCACACAT+AGG | 0.620013 | 5_4:+57769257 | None:intergenic |
| CCTGCGGTTGAATTGTCTGA+AGG | 0.635277 | 5_4:-57769897 | Msa0859430:intron |
| GGCTACCTGATGAAGTCTAG+AGG | 0.636062 | 5_4:-57769963 | Msa0859430:CDS |
| ATTGCATGTCAGGAAAGAGT+AGG | 0.640347 | 5_4:-57770214 | Msa0859430:intron |
| GGGAAGCCAAAGCTAAGATG+TGG | 0.645326 | 5_4:+57769493 | None:intergenic |
| TCATAGTGTTCCGATTGGAT+CGG | 0.646922 | 5_4:-57772679 | Msa0859430:CDS |
| GTTGAAGAAGGTGAAGTGTG+CGG | 0.646996 | 5_4:-57772711 | Msa0859430:CDS |
| TAGTGCCCACATACACCACA+AGG | 0.653583 | 5_4:+57772741 | None:intergenic |
| TAGCACCTTGACATGAAACA+TGG | 0.662132 | 5_4:+57769199 | None:intergenic |
| TTGGTCGGAGCTATGTCGGA+GGG | 0.664050 | 5_4:+57769400 | None:intergenic |
| AAAACCCTTGTGGTGTATGT+GGG | 0.672215 | 5_4:-57772746 | Msa0859430:CDS |
| GACTACCACAGAGTTATCAG+TGG | 0.687636 | 5_4:-57769935 | Msa0859430:CDS |
| TTTACCCACTGATAACTCTG+TGG | 0.687728 | 5_4:+57769930 | None:intergenic |
| ATTGGTCGGAGCTATGTCGG+AGG | 0.691767 | 5_4:+57769399 | None:intergenic |
| GTAGCCAATCACGACAGCTG+GGG | 0.697959 | 5_4:+57769980 | None:intergenic |
| ACTACCACAGAGTTATCAGT+GGG | 0.704787 | 5_4:-57769934 | Msa0859430:CDS |
| CTGAGCTTCTCAAAACTCAG+GGG | 0.708363 | 5_4:-57772569 | Msa0859430:CDS |
| GGTAAAGGAACGTAGACCTG+CGG | 0.712440 | 5_4:-57769913 | Msa0859430:CDS |
| AGAGAGAGGGAAAACCCTTG+TGG | 0.721358 | 5_4:-57772756 | Msa0859430:CDS |
| AGTGCCCACATACACCACAA+GGG | 0.774096 | 5_4:+57772742 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAATTTATTATTAACTAA+TGG | - | chr5_4:57770883-57770902 | Msa0859430:intron | 10.0% |
| !! | AAATAAGTTAAATTCTATAA+TGG | - | chr5_4:57771112-57771131 | Msa0859430:intron | 10.0% |
| !!! | ATATTTTCAAATAGCAATTA+TGG | + | chr5_4:57769871-57769890 | None:intergenic | 15.0% |
| !!! | ATATTTTGTAGTGAATTTAT+GGG | - | chr5_4:57770291-57770310 | Msa0859430:intron | 15.0% |
| !! | ATTGAATATTTGAAGATTCT+AGG | + | chr5_4:57769016-57769035 | None:intergenic | 20.0% |
| !! | GAATGAAAGAAGTAAAAAAA+CGG | + | chr5_4:57769084-57769103 | None:intergenic | 20.0% |
| !!! | TTTTGAACGATTAAAGAAAA+GGG | + | chr5_4:57769246-57769265 | None:intergenic | 20.0% |
| !!! | TTTTTGAACGATTAAAGAAA+AGG | + | chr5_4:57769247-57769266 | None:intergenic | 20.0% |
| !!! | AAAATCGAATTTTTTTCATC+TGG | - | chr5_4:57769263-57769282 | Msa0859430:three_prime_UTR | 20.0% |
| !!! | AAATCGAATTTTTTTCATCT+GGG | - | chr5_4:57769264-57769283 | Msa0859430:three_prime_UTR | 20.0% |
| !! | TTAATGTTTCTTTGATTGAT+TGG | - | chr5_4:57769628-57769647 | Msa0859430:intron | 20.0% |
| !!! | TTGTGTATTGTTTTAGATTT+AGG | - | chr5_4:57769787-57769806 | Msa0859430:intron | 20.0% |
| !!! | TGTGTATTGTTTTAGATTTA+GGG | - | chr5_4:57769788-57769807 | Msa0859430:intron | 20.0% |
| !!! | GATATTTTGTAGTGAATTTA+TGG | - | chr5_4:57770290-57770309 | Msa0859430:intron | 20.0% |
| !! | TTTAAATTTAGTGTTGTCAA+CGG | - | chr5_4:57770374-57770393 | Msa0859430:intron | 20.0% |
| !!! | AAACTAATTTTTCTCACAAA+AGG | - | chr5_4:57770696-57770715 | Msa0859430:intron | 20.0% |
| !! | TTGTACTAAATAGTATATTG+TGG | + | chr5_4:57770868-57770887 | None:intergenic | 20.0% |
| !!! | ATTTTGAGTGAAAAAAGAAA+TGG | - | chr5_4:57771009-57771028 | Msa0859430:intron | 20.0% |
| !! | ATGCTTACAGTTATATATAT+TGG | + | chr5_4:57771959-57771978 | None:intergenic | 20.0% |
| !! | AATATATATAACTGTAAGCA+TGG | - | chr5_4:57771958-57771977 | Msa0859430:intron | 20.0% |
| !!! | ATTTTTACTACACACTTTAA+AGG | + | chr5_4:57772376-57772395 | None:intergenic | 20.0% |
| !!! | TAAAACACACAAATTTTAAC+GGG | + | chr5_4:57772473-57772492 | None:intergenic | 20.0% |
| !!! | CTAAAACACACAAATTTTAA+CGG | + | chr5_4:57772474-57772493 | None:intergenic | 20.0% |
| !! | CTACATTAATAAAATATGGA+TGG | + | chr5_4:57772527-57772546 | None:intergenic | 20.0% |
| !!! | CATCCATATTTTATTAATGT+AGG | - | chr5_4:57772525-57772544 | Msa0859430:intron | 20.0% |
| !!! | TTAGATGGATTTGTATTAAA+AGG | + | chr5_4:57772801-57772820 | None:intergenic | 20.0% |
| ! | AACAAAAAACCCAAAAAACT+AGG | - | chr5_4:57769053-57769072 | Msa0859430:three_prime_UTR | 25.0% |
| ! | ATTATGCATCATGGAAAATA+TGG | - | chr5_4:57769817-57769836 | Msa0859430:intron | 25.0% |
| ! | TTCAGATTGTGTTTATTCAA+TGG | - | chr5_4:57770075-57770094 | Msa0859430:intron | 25.0% |
| ! | CAAACATCATCATCATAAAA+AGG | + | chr5_4:57770101-57770120 | None:intergenic | 25.0% |
| !! | TGAAATTATGGGTTTTTGAT+TGG | - | chr5_4:57770150-57770169 | Msa0859430:intron | 25.0% |
| ! | ATATTTAATGTTGTTAACCG+TGG | - | chr5_4:57770433-57770452 | Msa0859430:intron | 25.0% |
| ! | TATTAAATTGTGTGCGAAAT+AGG | - | chr5_4:57770514-57770533 | Msa0859430:intron | 25.0% |
| ! | ATTAAATTGTGTGCGAAATA+GGG | - | chr5_4:57770515-57770534 | Msa0859430:intron | 25.0% |
| ! | TCCTTGTATATACATTTAGT+AGG | + | chr5_4:57770743-57770762 | None:intergenic | 25.0% |
| ! | TAAATTCTATAATGGCGTAT+TGG | - | chr5_4:57771120-57771139 | Msa0859430:intron | 25.0% |
| ! | TCTAACATTATTGTTCTTTG+TGG | - | chr5_4:57771194-57771213 | Msa0859430:intron | 25.0% |
| ! | TTGTGGAATTTGAATGATAA+TGG | - | chr5_4:57771211-57771230 | Msa0859430:intron | 25.0% |
| ! | AAGATCAATGCTATCAATTA+TGG | + | chr5_4:57771653-57771672 | None:intergenic | 25.0% |
| ! | TGTAAATAGAAGAAACATGT+TGG | + | chr5_4:57771821-57771840 | None:intergenic | 25.0% |
| ! | TAGATTGAATTAGTTAGTGA+TGG | - | chr5_4:57772001-57772020 | Msa0859430:intron | 25.0% |
| !! | AGTTGATTACAGATTTTTAC+TGG | - | chr5_4:57772326-57772345 | Msa0859430:intron | 25.0% |
| ! | GCACCTACATTAATAAAATA+TGG | + | chr5_4:57772531-57772550 | None:intergenic | 25.0% |
| ! | TTCTTAGTTATCAATCACTA+TGG | - | chr5_4:57773020-57773039 | Msa0859430:five_prime_UTR | 25.0% |
| !!! | GTTTGTTTTGTTGTTTTACG+AGG | + | chr5_4:57769200-57769219 | None:intergenic | 30.0% |
| !!! | TAAAGAAAAGGGTTTTGAAG+AGG | + | chr5_4:57769235-57769254 | None:intergenic | 30.0% |
| !! | AAAATCGTTGTTTCTTGATC+TGG | - | chr5_4:57769335-57769354 | Msa0859430:CDS | 30.0% |
| !! | AAATCGTTGTTTCTTGATCT+GGG | - | chr5_4:57769336-57769355 | Msa0859430:CDS | 30.0% |
| TATCCTCAATGTAAGAATCA+TGG | - | chr5_4:57769597-57769616 | Msa0859430:intron | 30.0% | |
| AAACCATGATTCTTACATTG+AGG | + | chr5_4:57769603-57769622 | None:intergenic | 30.0% | |
| TTCAAATAGCAATTATGGCA+CGG | + | chr5_4:57769866-57769885 | None:intergenic | 30.0% | |
| GTTACGTCATAATGTCTATT+TGG | + | chr5_4:57769930-57769949 | None:intergenic | 30.0% | |
| GAATTTATGGGTTTCTTGAT+TGG | - | chr5_4:57770303-57770322 | Msa0859430:intron | 30.0% | |
| TTTATGCATTTGGATTGTTG+TGG | - | chr5_4:57770346-57770365 | Msa0859430:intron | 30.0% | |
| ! | TTTGATCAAACTCGATTTTC+CGG | + | chr5_4:57770406-57770425 | None:intergenic | 30.0% |
| AACAAGTTTGTGTCAATTAG+AGG | + | chr5_4:57770613-57770632 | None:intergenic | 30.0% | |
| ! | CTAATTGACACAAACTTGTT+CGG | - | chr5_4:57770613-57770632 | Msa0859430:intron | 30.0% |
| TCATATTATCTCCTATGCTA+GGG | - | chr5_4:57770666-57770685 | Msa0859430:intron | 30.0% | |
| GCCTACTAAATGTATATACA+AGG | - | chr5_4:57770739-57770758 | Msa0859430:CDS | 30.0% | |
| ATACAAGGATCAAGTACAAA+TGG | - | chr5_4:57770754-57770773 | Msa0859430:CDS | 30.0% | |
| TACAAGGATCAAGTACAAAT+GGG | - | chr5_4:57770755-57770774 | Msa0859430:CDS | 30.0% | |
| TGGGATTGATATTGTATCTT+TGG | - | chr5_4:57770774-57770793 | Msa0859430:CDS | 30.0% | |
| ATTTCTGTGTTGTCAAATAG+CGG | - | chr5_4:57770804-57770823 | Msa0859430:intron | 30.0% | |
| AAGGAACAAAAGAAATAAGG+CGG | + | chr5_4:57771237-57771256 | None:intergenic | 30.0% | |
| TCCAAGGAACAAAAGAAATA+AGG | + | chr5_4:57771240-57771259 | None:intergenic | 30.0% | |
| !! | TGTAGAGATTTTGACAAGAA+GGG | + | chr5_4:57771345-57771364 | None:intergenic | 30.0% |
| !! | TTGTAGAGATTTTGACAAGA+AGG | + | chr5_4:57771346-57771365 | None:intergenic | 30.0% |
| ! | TAAATTTTGAGCAGAGAAGA+AGG | + | chr5_4:57771447-57771466 | None:intergenic | 30.0% |
| !!! | ACATTGTTTTGGCAGATTTT+AGG | - | chr5_4:57771617-57771636 | Msa0859430:intron | 30.0% |
| ATGCTATCAATTATGGATGA+CGG | + | chr5_4:57771646-57771665 | None:intergenic | 30.0% | |
| GAGTTACATGTATATATCTC+TGG | - | chr5_4:57772127-57772146 | Msa0859430:intron | 30.0% | |
| TACATGTATATATCTCTGGT+AGG | - | chr5_4:57772131-57772150 | Msa0859430:intron | 30.0% | |
| GTGTGTAGTAAAAATCATCA+AGG | - | chr5_4:57772381-57772400 | Msa0859430:intron | 30.0% | |
| GAGTACGAAAAAAAGCTATT+TGG | - | chr5_4:57772567-57772586 | Msa0859430:CDS | 30.0% | |
| AAAAAAGCTATTTGGATCAG+TGG | - | chr5_4:57772575-57772594 | Msa0859430:CDS | 30.0% | |
| AAAAAGCTATTTGGATCAGT+GGG | - | chr5_4:57772576-57772595 | Msa0859430:CDS | 30.0% | |
| GAGCTATATCATTTGTCTTT+GGG | + | chr5_4:57772665-57772684 | None:intergenic | 30.0% | |
| ATCTGAATATCGGTAACATT+AGG | + | chr5_4:57772825-57772844 | None:intergenic | 30.0% | |
| TAATGTTACCGATATTCAGA+TGG | - | chr5_4:57772824-57772843 | Msa0859430:five_prime_UTR | 30.0% | |
| ! | TTAAGCTACTTGACGATTTT+TGG | - | chr5_4:57772889-57772908 | Msa0859430:five_prime_UTR | 30.0% |
| AATTTGTAGCATGAAAGAAC+TGG | + | chr5_4:57773097-57773116 | None:intergenic | 30.0% | |
| !!! | ACGGTGAAACCTAGTTTTTT+GGG | + | chr5_4:57769065-57769084 | None:intergenic | 35.0% |
| !!! | AACGGTGAAACCTAGTTTTT+TGG | + | chr5_4:57769066-57769085 | None:intergenic | 35.0% |
| TTTGAAGAGGATCAAGAAAG+AGG | + | chr5_4:57769222-57769241 | None:intergenic | 35.0% | |
| ! | TGATAATGAGGAAAAGAGAG+AGG | - | chr5_4:57769365-57769384 | Msa0859430:CDS | 35.0% |
| GATAATGAGGAAAAGAGAGA+GGG | - | chr5_4:57769366-57769385 | Msa0859430:CDS | 35.0% | |
| CACTATCACAAAGTTGAAGA+AGG | - | chr5_4:57769412-57769431 | Msa0859430:CDS | 35.0% | |
| ! | GAAGCTATGATAATGCTTCA+CGG | - | chr5_4:57769542-57769561 | Msa0859430:CDS | 35.0% |
| !! | GTGTGTTGATTGGTTTAATG+TGG | - | chr5_4:57769737-57769756 | Msa0859430:intron | 35.0% |
| TGTGATTGTGTTTGTGCATT+TGG | - | chr5_4:57769760-57769779 | Msa0859430:intron | 35.0% | |
| TTGTAAATTCCGCTACACTA+AGG | - | chr5_4:57769998-57770017 | Msa0859430:intron | 35.0% | |
| !!! | CACTAAGGAGTGTTTTGTTT+TGG | - | chr5_4:57770013-57770032 | Msa0859430:intron | 35.0% |
| !! | GGTTTTTGATTGGTGTAATG+TGG | - | chr5_4:57770160-57770179 | Msa0859430:intron | 35.0% |
| !! | TTTTGATTGGTGTAATGTGG+TGG | - | chr5_4:57770163-57770182 | Msa0859430:intron | 35.0% |
| TTTGATTGGTGTAATGTGGT+GGG | - | chr5_4:57770164-57770183 | Msa0859430:intron | 35.0% | |
| GATTTAGTGTCGTGAATTGT+CGG | - | chr5_4:57770223-57770242 | Msa0859430:CDS | 35.0% | |
| !! | GTTTCTTGATTGGTCTAATG+TGG | - | chr5_4:57770313-57770332 | Msa0859430:intron | 35.0% |
| TGAGATTGCGTTTATGCATT+TGG | - | chr5_4:57770336-57770355 | Msa0859430:intron | 35.0% | |
| AAATTTAGTGTTGTCAACGG+TGG | - | chr5_4:57770377-57770396 | Msa0859430:intron | 35.0% | |
| ! | TTGATCAAACTCGATTTTCC+GGG | + | chr5_4:57770405-57770424 | None:intergenic | 35.0% |
| TACAGAATGTTGTCAAGTAG+CGG | + | chr5_4:57770496-57770515 | None:intergenic | 35.0% | |
| AGACGCTATTTAGCAACAAA+AGG | - | chr5_4:57770557-57770576 | Msa0859430:intron | 35.0% | |
| TGATCAATGTGGTCAAATAG+CGG | + | chr5_4:57770583-57770602 | None:intergenic | 35.0% | |
| GAGGTTTGATATGATCAATG+TGG | + | chr5_4:57770594-57770613 | None:intergenic | 35.0% | |
| ACTGACAAAATCCACATTGT+AGG | + | chr5_4:57770647-57770666 | None:intergenic | 35.0% | |
| GTCATATTATCTCCTATGCT+AGG | - | chr5_4:57770665-57770684 | Msa0859430:intron | 35.0% | |
| CGCAGAACACAAAAAAATAG+AGG | + | chr5_4:57770954-57770973 | None:intergenic | 35.0% | |
| TTTCTGTCTGTGTTTGTTTG+TGG | - | chr5_4:57771046-57771065 | Msa0859430:intron | 35.0% | |
| TTCTGTCTGTGTTTGTTTGT+GGG | - | chr5_4:57771047-57771066 | Msa0859430:intron | 35.0% | |
| ! | TTGTGGGAAGAGAGTTATTT+TGG | - | chr5_4:57771063-57771082 | Msa0859430:intron | 35.0% |
| !!! | GGAAGAGAGTTATTTTGGAT+GGG | - | chr5_4:57771068-57771087 | Msa0859430:intron | 35.0% |
| AGTTTCTATAACATGCAGAG+TGG | + | chr5_4:57771159-57771178 | None:intergenic | 35.0% | |
| !!! | GCCTTATTTCTTTTGTTCCT+TGG | - | chr5_4:57771236-57771255 | Msa0859430:intron | 35.0% |
| TGTTCCTTGGAAATTGTACT+TGG | - | chr5_4:57771249-57771268 | Msa0859430:intron | 35.0% | |
| GATTCCAAGTACAATTTCCA+AGG | + | chr5_4:57771256-57771275 | None:intergenic | 35.0% | |
| ! | ACTGGAAACTTTTGTCATCT+GGG | + | chr5_4:57771393-57771412 | None:intergenic | 35.0% |
| ! | AACTGGAAACTTTTGTCATC+TGG | + | chr5_4:57771394-57771413 | None:intergenic | 35.0% |
| TGACAAAAGTTTCCAGTTTG+AGG | - | chr5_4:57771396-57771415 | Msa0859430:intron | 35.0% | |
| GCAAAATAATAATGCAGCGT+TGG | + | chr5_4:57771863-57771882 | None:intergenic | 35.0% | |
| CAAGTTAACTCGTCAGATTT+CGG | - | chr5_4:57772299-57772318 | Msa0859430:intron | 35.0% | |
| ATCAAACCCTTTCAACAACT+AGG | + | chr5_4:57772352-57772371 | None:intergenic | 35.0% | |
| !!! | CACACAAATTTTAACGGGTT+TGG | + | chr5_4:57772468-57772487 | None:intergenic | 35.0% |
| ! | TATGGATGGATTCAGAAAGA+TGG | + | chr5_4:57772513-57772532 | None:intergenic | 35.0% |
| GGAGCTATATCATTTGTCTT+TGG | + | chr5_4:57772666-57772685 | None:intergenic | 35.0% | |
| TCGGTAACATTAGGATTAGA+TGG | + | chr5_4:57772816-57772835 | None:intergenic | 35.0% | |
| AGATCCATCCATCTGAATAT+CGG | + | chr5_4:57772835-57772854 | None:intergenic | 35.0% | |
| CAAGTAGCTTAATCACACAT+AGG | + | chr5_4:57772881-57772900 | None:intergenic | 35.0% | |
| ! | CAAGGTGCTATAATCATAAG+TGG | - | chr5_4:57772949-57772968 | Msa0859430:five_prime_UTR | 35.0% |
| !! | TTGAGTACAGCATGTTTTAG+TGG | - | chr5_4:57773051-57773070 | Msa0859430:five_prime_UTR | 35.0% |
| AAAACCCTTGTGGTGTATGT+GGG | - | chr5_4:57769389-57769408 | Msa0859430:CDS | 40.0% | |
| TCATAGTGTTCCGATTGGAT+CGG | - | chr5_4:57769456-57769475 | Msa0859430:CDS | 40.0% | |
| ! | GAAGTTTTCTCCGATCCAAT+CGG | + | chr5_4:57769469-57769488 | None:intergenic | 40.0% |
| ! | TTTTCCTTCTGTGATCTTGC+CGG | - | chr5_4:57769504-57769523 | Msa0859430:CDS | 40.0% |
| TTGCCGGAGTTTCTTTACTT+GGG | - | chr5_4:57769520-57769539 | Msa0859430:CDS | 40.0% | |
| CTTCCCAAGTAAAGAAACTC+CGG | + | chr5_4:57769526-57769545 | None:intergenic | 40.0% | |
| TCTGAGCTTCTCAAAACTCA+GGG | - | chr5_4:57769565-57769584 | Msa0859430:CDS | 40.0% | |
| ! | GAAATCATGCGTGTGTTGAT+TGG | - | chr5_4:57769727-57769746 | Msa0859430:intron | 40.0% |
| GGGTTGTCAATTATGCATCA+TGG | - | chr5_4:57769808-57769827 | Msa0859430:intron | 40.0% | |
| AAATAGCAATTATGGCACGG+TGG | + | chr5_4:57769863-57769882 | None:intergenic | 40.0% | |
| GGTTGCAACTCATTATGTAG+CGG | + | chr5_4:57769909-57769928 | None:intergenic | 40.0% | |
| ACTAAGTGAGATCGGCTATA+TGG | + | chr5_4:57769958-57769977 | None:intergenic | 40.0% | |
| ATATAGCCGATCTCACTTAG+TGG | - | chr5_4:57769957-57769976 | Msa0859430:CDS | 40.0% | |
| TATAGCCGATCTCACTTAGT+GGG | - | chr5_4:57769958-57769977 | Msa0859430:CDS | 40.0% | |
| CTTATCCCACTAAGTGAGAT+CGG | + | chr5_4:57769966-57769985 | None:intergenic | 40.0% | |
| CAAAACACTCCTTAGTGTAG+CGG | + | chr5_4:57770010-57770029 | None:intergenic | 40.0% | |
| ! | ATGTTGTTAACCGTGGATTG+CGG | - | chr5_4:57770440-57770459 | Msa0859430:intron | 40.0% |
| ! | ACTCTATTTTCCGCAATCCA+CGG | + | chr5_4:57770453-57770472 | None:intergenic | 40.0% |
| GTTTACAAGATCCCTAGCAT+AGG | + | chr5_4:57770680-57770699 | None:intergenic | 40.0% | |
| GGCACATTGTGAGGTTAATT+TGG | - | chr5_4:57770717-57770736 | Msa0859430:intron | 40.0% | |
| TCAAATTCAGCTGCACAGTA+AGG | + | chr5_4:57770830-57770849 | None:intergenic | 40.0% | |
| !!! | GGGAAGAGAGTTATTTTGGA+TGG | - | chr5_4:57771067-57771086 | Msa0859430:intron | 40.0% |
| !!! | AGAGAGTTATTTTGGATGGG+TGG | - | chr5_4:57771071-57771090 | Msa0859430:intron | 40.0% |
| ! | TCTATAATGGCGTATTGGTG+TGG | - | chr5_4:57771125-57771144 | Msa0859430:intron | 40.0% |
| TGCACAAACAGGAAATGCAA+AGG | + | chr5_4:57771316-57771335 | None:intergenic | 40.0% | |
| ! | AGCCATACGAGACATTGTTT+TGG | - | chr5_4:57771606-57771625 | Msa0859430:intron | 40.0% |
| TGCCAAAACAATGTCTCGTA+TGG | + | chr5_4:57771611-57771630 | None:intergenic | 40.0% | |
| ! | ATTTTGCAGAGCAATGTGAG+AGG | - | chr5_4:57771876-57771895 | Msa0859430:intron | 40.0% |
| ! | TTTTGCAGAGCAATGTGAGA+GGG | - | chr5_4:57771877-57771896 | Msa0859430:intron | 40.0% |
| ATTGCATGTCAGGAAAGAGT+AGG | - | chr5_4:57771921-57771940 | Msa0859430:intron | 40.0% | |
| TTGACACCAGTCTTGCAAAT+TGG | - | chr5_4:57772056-57772075 | Msa0859430:intron | 40.0% | |
| TGACACCAGTCTTGCAAATT+GGG | - | chr5_4:57772057-57772076 | Msa0859430:intron | 40.0% | |
| ACTACCACAGAGTTATCAGT+GGG | - | chr5_4:57772201-57772220 | Msa0859430:intron | 40.0% | |
| TTTACCCACTGATAACTCTG+TGG | + | chr5_4:57772208-57772227 | None:intergenic | 40.0% | |
| ACAGAGTTATCAGTGGGTAA+AGG | - | chr5_4:57772207-57772226 | Msa0859430:intron | 40.0% | |
| ! | TTACTGGCCTAGTTGTTGAA+AGG | - | chr5_4:57772342-57772361 | Msa0859430:intron | 40.0% |
| ! | TACTGGCCTAGTTGTTGAAA+GGG | - | chr5_4:57772343-57772362 | Msa0859430:intron | 40.0% |
| ! | TTGTTTTCTCACCTGCAGAA+GGG | - | chr5_4:57772619-57772638 | Msa0859430:CDS | 40.0% |
| GTTACCGATATTCAGATGGA+TGG | - | chr5_4:57772828-57772847 | Msa0859430:five_prime_UTR | 40.0% | |
| !!! | GACGATTTTTGGCTGTGTTA+AGG | - | chr5_4:57772900-57772919 | Msa0859430:five_prime_UTR | 40.0% |
| GACATGAAACATGGCAAACT+TGG | + | chr5_4:57772930-57772949 | None:intergenic | 40.0% | |
| GTTTGCCATGTTTCATGTCA+AGG | - | chr5_4:57772931-57772950 | Msa0859430:five_prime_UTR | 40.0% | |
| TAGCACCTTGACATGAAACA+TGG | + | chr5_4:57772939-57772958 | None:intergenic | 40.0% | |
| !! | CGTTGTTTCTTGATCTGGGT+CGG | - | chr5_4:57769340-57769359 | Msa0859430:CDS | 45.0% |
| !! | TCTGGGTCGGTTTGATAATG+AGG | - | chr5_4:57769353-57769372 | Msa0859430:CDS | 45.0% |
| GAAAACCCTTGTGGTGTATG+TGG | - | chr5_4:57769388-57769407 | Msa0859430:CDS | 45.0% | |
| GTTGAAGAAGGTGAAGTGTG+CGG | - | chr5_4:57769424-57769443 | Msa0859430:CDS | 45.0% | |
| TTGAAGAAGGTGAAGTGTGC+GGG | - | chr5_4:57769425-57769444 | Msa0859430:CDS | 45.0% | |
| TGTGGTCATAGTGTTCCGAT+TGG | - | chr5_4:57769451-57769470 | Msa0859430:CDS | 45.0% | |
| CTTGCCGGAGTTTCTTTACT+TGG | - | chr5_4:57769519-57769538 | Msa0859430:CDS | 45.0% | |
| GTCTGAGCTTCTCAAAACTC+AGG | - | chr5_4:57769564-57769583 | Msa0859430:CDS | 45.0% | |
| CTGAGCTTCTCAAAACTCAG+GGG | - | chr5_4:57769566-57769585 | Msa0859430:CDS | 45.0% | |
| CGATCTCACTTAGTGGGATA+AGG | - | chr5_4:57769964-57769983 | Msa0859430:CDS | 45.0% | |
| TCACTTAGTGGGATAAGGCT+TGG | - | chr5_4:57769969-57769988 | Msa0859430:CDS | 45.0% | |
| GGTGGGATTGTGTGTGTATT+TGG | - | chr5_4:57770181-57770200 | Msa0859430:intron | 45.0% | |
| ! | ACACAAACTTGTTCGGAGTG+AGG | - | chr5_4:57770620-57770639 | Msa0859430:intron | 45.0% |
| ! | CTCACAAAAGGCACATTGTG+AGG | - | chr5_4:57770708-57770727 | Msa0859430:intron | 45.0% |
| TGCGATTGACAACACTGAAG+TGG | - | chr5_4:57770970-57770989 | Msa0859430:intron | 45.0% | |
| ATTGACAACACTGAAGTGGC+TGG | - | chr5_4:57770974-57770993 | Msa0859430:intron | 45.0% | |
| !!! | GAGTTATTTTGGATGGGTGG+TGG | - | chr5_4:57771074-57771093 | Msa0859430:intron | 45.0% |
| ! | GGAAACTTTTGTCATCTGGG+AGG | + | chr5_4:57771390-57771409 | None:intergenic | 45.0% |
| !! | ACTGGTTTGCTTCCTCAAAC+TGG | + | chr5_4:57771411-57771430 | None:intergenic | 45.0% |
| TGAGGAAGCAAACCAGTTTC+TGG | - | chr5_4:57771414-57771433 | Msa0859430:intron | 45.0% | |
| GAGGAAGCAAACCAGTTTCT+GGG | - | chr5_4:57771415-57771434 | Msa0859430:intron | 45.0% | |
| GAAGGAACATACCCAGAAAC+TGG | + | chr5_4:57771429-57771448 | None:intergenic | 45.0% | |
| AGAGCAATGTGAGAGGGATA+AGG | - | chr5_4:57771883-57771902 | Msa0859430:intron | 45.0% | |
| !! | GTTCTGGTTCATTGCATGTC+AGG | - | chr5_4:57771911-57771930 | Msa0859430:intron | 45.0% |
| TGCATCCCAATTTGCAAGAC+TGG | + | chr5_4:57772065-57772084 | None:intergenic | 45.0% | |
| TCTTGCAAATTGGGATGCAG+TGG | - | chr5_4:57772066-57772085 | Msa0859430:intron | 45.0% | |
| ACCTGATGAAGTCTAGAGGA+TGG | - | chr5_4:57772176-57772195 | Msa0859430:intron | 45.0% | |
| TCCATCCTCTAGACTTCATC+AGG | + | chr5_4:57772180-57772199 | None:intergenic | 45.0% | |
| GACTACCACAGAGTTATCAG+TGG | - | chr5_4:57772200-57772219 | Msa0859430:intron | 45.0% | |
| ! | GTTTGGCTCGTCTAAAGTGA+GGG | + | chr5_4:57772451-57772470 | None:intergenic | 45.0% |
| TTTCGTACTCCTGTAGTTGC+TGG | + | chr5_4:57772557-57772576 | None:intergenic | 45.0% | |
| TCTGCAGGTGAGAAAACAAC+AGG | + | chr5_4:57772618-57772637 | None:intergenic | 45.0% | |
| !! | GTTGTTTTCTCACCTGCAGA+AGG | - | chr5_4:57772618-57772637 | Msa0859430:CDS | 45.0% |
| GGTGCTCGAGAGAAAATTGA+AGG | + | chr5_4:57772717-57772736 | None:intergenic | 45.0% | |
| GAAATTGGTCGGAGCTATGT+CGG | + | chr5_4:57772742-57772761 | None:intergenic | 45.0% | |
| GCTCCGACCAATTTCACATT+CGG | - | chr5_4:57772747-57772766 | Msa0859430:CDS | 45.0% | |
| GCTCCGAATGTGAAATTGGT+CGG | + | chr5_4:57772753-57772772 | None:intergenic | 45.0% | |
| ACCAATTTCACATTCGGAGC+CGG | - | chr5_4:57772753-57772772 | Msa0859430:CDS | 45.0% | |
| ACTTCCAGTGACATTCTGAC+CGG | + | chr5_4:57772775-57772794 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTATGAAATTA+TGG | - | chr5_4:57770138-57770157 | Msa0859430:intron | 5.0% |
| !!! | TTTTTTTTTTATGAAATTAT+GGG | - | chr5_4:57770139-57770158 | Msa0859430:intron | 5.0% |
| AGAGAGAGGGAAAACCCTTG+TGG | - | chr5_4:57769379-57769398 | Msa0859430:CDS | 50.0% | |
| AGTGCCCACATACACCACAA+GGG | + | chr5_4:57769396-57769415 | None:intergenic | 50.0% | |
| TAGTGCCCACATACACCACA+AGG | + | chr5_4:57769397-57769416 | None:intergenic | 50.0% | |
| AACTCCGGCAAGATCACAGA+AGG | + | chr5_4:57769511-57769530 | None:intergenic | 50.0% | |
| GTGTCGTGAATTGTCGGTAG+TGG | - | chr5_4:57770229-57770248 | Msa0859430:CDS | 50.0% | |
| !! | TGAAGTGGCTGGACTGGTTT+AGG | - | chr5_4:57770985-57771004 | Msa0859430:intron | 50.0% |
| AAGGGACAGTCTGCACAAAC+AGG | + | chr5_4:57771327-57771346 | None:intergenic | 50.0% | |
| GGCTACCTGATGAAGTCTAG+AGG | - | chr5_4:57772172-57772191 | Msa0859430:intron | 50.0% | |
| GGTAAAGGAACGTAGACCTG+CGG | - | chr5_4:57772222-57772241 | Msa0859430:intron | 50.0% | |
| CCTTCAGACAATTCAACCGC+AGG | + | chr5_4:57772241-57772260 | None:intergenic | 50.0% | |
| CCTGCGGTTGAATTGTCTGA+AGG | - | chr5_4:57772238-57772257 | Msa0859430:intron | 50.0% | |
| ! | GGTTTGGCTCGTCTAAAGTG+AGG | + | chr5_4:57772452-57772471 | None:intergenic | 50.0% |
| GTACTCCTGTAGTTGCTGGT+GGG | + | chr5_4:57772553-57772572 | None:intergenic | 50.0% | |
| GAAGGGCCACATCTTAGCTT+TGG | - | chr5_4:57772636-57772655 | Msa0859430:CDS | 50.0% | |
| GGGAAGCCAAAGCTAAGATG+TGG | + | chr5_4:57772645-57772664 | None:intergenic | 50.0% | |
| ATAGCTCCACTTCCTGCCTT+CGG | - | chr5_4:57772678-57772697 | Msa0859430:CDS | 50.0% | |
| ! | ACCGGCTCCGAATGTGAAAT+TGG | + | chr5_4:57772757-57772776 | None:intergenic | 50.0% |
| GGTGAAGTGTGCGGGATTTG+TGG | - | chr5_4:57769433-57769452 | Msa0859430:CDS | 55.0% | |
| GTGTTGTCAACGGTGGATCC+CGG | - | chr5_4:57770384-57770403 | Msa0859430:intron | 55.0% | |
| CGGAGTGAGGTCCTACAATG+TGG | - | chr5_4:57770633-57770652 | Msa0859430:intron | 55.0% | |
| CAACACTGAAGTGGCTGGAC+TGG | - | chr5_4:57770979-57770998 | Msa0859430:intron | 55.0% | |
| GTCATCTGGGAGGCAGTGAT+AGG | + | chr5_4:57771380-57771399 | None:intergenic | 55.0% | |
| ! | GAGGGATAAGGAGCGTGTTC+TGG | - | chr5_4:57771895-57771914 | Msa0859430:intron | 55.0% |
| GTAGCCAATCACGACAGCTG+GGG | + | chr5_4:57772158-57772177 | None:intergenic | 55.0% | |
| GGTAGCCAATCACGACAGCT+GGG | + | chr5_4:57772159-57772178 | None:intergenic | 55.0% | |
| AGGTAGCCAATCACGACAGC+TGG | + | chr5_4:57772160-57772179 | None:intergenic | 55.0% | |
| CGTACTCCTGTAGTTGCTGG+TGG | + | chr5_4:57772554-57772573 | None:intergenic | 55.0% | |
| CTAAGATGTGGCCCTTCTGC+AGG | + | chr5_4:57772633-57772652 | None:intergenic | 55.0% | |
| AGGAGTTGTAGTGCAGCCGA+AGG | + | chr5_4:57772697-57772716 | None:intergenic | 55.0% | |
| TTGGTCGGAGCTATGTCGGA+GGG | + | chr5_4:57772738-57772757 | None:intergenic | 55.0% | |
| ATTGGTCGGAGCTATGTCGG+AGG | + | chr5_4:57772739-57772758 | None:intergenic | 55.0% | |
| !! | TCACACATAGGTGCTGCTGC+TGG | + | chr5_4:57772869-57772888 | None:intergenic | 55.0% |
| AGGTCCCCAGCTGTCGTGAT+TGG | - | chr5_4:57772151-57772170 | Msa0859430:intron | 60.0% | |
| AGGTGCCCACCAGCAACTAC+AGG | - | chr5_4:57772545-57772564 | Msa0859430:intron | 60.0% | |
| GTTGTAGTGCAGCCGAAGGC+AGG | + | chr5_4:57772693-57772712 | None:intergenic | 60.0% | |
| GGAGCCGGTCAGAATGTCAC+TGG | - | chr5_4:57772768-57772787 | Msa0859430:CDS | 60.0% | |
| GTGCAGCCGAAGGCAGGAAG+TGG | + | chr5_4:57772687-57772706 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 57769009 | 57773148 | 57769009 | ID=Msa0859430;Name=Msa0859430 |
| chr5_4 | mRNA | 57769009 | 57773148 | 57769009 | ID=Msa0859430-mRNA-1;Parent=Msa0859430;Name=Msa0859430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=361|1|1|1|1|1|5|291|270 |
| chr5_4 | exon | 57769009 | 57769610 | 57769009 | ID=Msa0859430-mRNA-1:exon:17583;Parent=Msa0859430-mRNA-1 |
| chr5_4 | exon | 57769898 | 57770004 | 57769898 | ID=Msa0859430-mRNA-1:exon:17582;Parent=Msa0859430-mRNA-1 |
| chr5_4 | exon | 57770215 | 57770272 | 57770215 | ID=Msa0859430-mRNA-1:exon:17581;Parent=Msa0859430-mRNA-1 |
| chr5_4 | exon | 57770721 | 57770820 | 57770721 | ID=Msa0859430-mRNA-1:exon:17580;Parent=Msa0859430-mRNA-1 |
| chr5_4 | exon | 57772551 | 57773148 | 57772551 | ID=Msa0859430-mRNA-1:exon:17579;Parent=Msa0859430-mRNA-1 |
| chr5_4 | five_prime_UTR | 57772788 | 57773148 | 57772788 | ID=Msa0859430-mRNA-1:five_prime_utr;Parent=Msa0859430-mRNA-1 |
| chr5_4 | CDS | 57772551 | 57772787 | 57772551 | ID=Msa0859430-mRNA-1:cds;Parent=Msa0859430-mRNA-1 |
| chr5_4 | CDS | 57770721 | 57770820 | 57770721 | ID=Msa0859430-mRNA-1:cds;Parent=Msa0859430-mRNA-1 |
| chr5_4 | CDS | 57770215 | 57770272 | 57770215 | ID=Msa0859430-mRNA-1:cds;Parent=Msa0859430-mRNA-1 |
| chr5_4 | CDS | 57769898 | 57770004 | 57769898 | ID=Msa0859430-mRNA-1:cds;Parent=Msa0859430-mRNA-1 |
| chr5_4 | CDS | 57769300 | 57769610 | 57769300 | ID=Msa0859430-mRNA-1:cds;Parent=Msa0859430-mRNA-1 |
| chr5_4 | three_prime_UTR | 57769009 | 57769299 | 57769009 | ID=Msa0859430-mRNA-1:three_prime_utr;Parent=Msa0859430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
