AlfalfaGEDB | Msa0859430

M. sativa cultivar zhongmu-4 / Msa0859430

KEGG: K04459
GO: GO:0000188 GO:0001101 GO:0001558 GO:0001932 GO:0001933 GO:0003674 GO:0003824 GO:0004721 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006469 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010563 GO:0010605 GO:0010646 GO:0010648 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019220 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033549 GO:0033673 GO:0033993 GO:0035556 GO:0036211 GO:0040008 GO:0042221 GO:0042325 GO:0042326 GO:0042578 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043407 GO:0043408 GO:0043409 GO:0043412 GO:0043549 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045936 GO:0046620 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048638 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051174 GO:0051239 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051716 GO:0060255 GO:0061388 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0080090 GO:0097305 GO:0140096 GO:1901564 GO:1901700 GO:1902531 GO:1902532
PFAM: PF00782.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0859430	XP_003616830.1	98.889	270	3	0	1	270	1	270	0.0	556

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0859430	sp\|Q84JU4\|IBR5_ARATH	59.707	273	91	3	1	270	1	257	9.02e-109	318

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0859430	G7K7F8	98.889	270	3	0	1	270	1	270	0.0	556

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0185640	Msa0859430	0.814129	1.802550e-51	-8.615850e-47
Msa0216300	Msa0859430	0.821066	4.918124e-53	-8.615850e-47
Msa0270440	Msa0859430	0.843363	1.467664e-58	-8.615850e-47
Msa0309080	Msa0859430	0.838166	3.379262e-57	-8.615850e-47
Msa0342340	Msa0859430	0.805545	1.267729e-49	-8.615850e-47
Msa0616560	Msa0859430	0.832422	9.541231e-56	-8.615850e-47
Msa0655990	Msa0859430	0.829854	4.078322e-55	-8.615850e-47
Msa0699920	Msa0859430	0.821871	3.206013e-53	-8.615850e-47
Msa0781220	Msa0859430	0.832068	1.167297e-55	-8.615850e-47
Msa0859430	Msa0968320	0.816524	5.291328e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0859430	MtrunA17_Chr5g0438601	98.889	270	3	0	1	270	1	270	0.0	556
Msa0859430	MtrunA17_Chr4g0065631	33.333	132	82	2	55	180	45	176	7.36e-18	79.3
Msa0859430	MtrunA17_Chr3g0123501	33.577	137	84	2	51	180	107	243	3.66e-14	72.0
Msa0859430	MtrunA17_Chr3g0131721	30.345	145	91	2	55	189	682	826	3.22e-13	69.3
Msa0859430	MtrunA17_Chr7g0222731	31.852	135	85	2	53	180	179	313	1.43e-12	67.4
Msa0859430	MtrunA17_Chr8g0385841	31.034	145	90	3	55	189	738	882	1.75e-12	67.4
Msa0859430	MtrunA17_Chr8g0381371	31.618	136	86	2	51	179	111	246	2.42e-12	66.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0859430	AT2G04550.1	59.707	273	91	3	1	270	1	257	9.17e-110	318
Msa0859430	AT2G04550.3	72.781	169	43	1	1	166	1	169	9.15e-94	274
Msa0859430	AT3G23610.2	36.620	142	83	3	47	182	51	191	2.03e-21	89.7
Msa0859430	AT3G23610.4	36.620	142	83	3	47	182	51	191	2.80e-21	89.4
Msa0859430	AT3G23610.5	36.429	140	82	3	47	180	51	189	4.45e-21	88.6
Msa0859430	AT3G23610.1	36.429	140	82	3	47	180	51	189	4.73e-21	88.6
Msa0859430	AT3G23610.3	36.429	140	82	3	47	180	51	189	1.49e-20	87.8
Msa0859430	AT3G06110.2	30.370	135	88	1	55	183	32	166	3.92e-16	74.3
Msa0859430	AT3G06110.3	30.370	135	88	1	55	183	32	166	3.92e-16	74.3
Msa0859430	AT3G06110.1	31.008	129	85	1	55	183	32	156	6.77e-16	73.6

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Find 89 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTTGTGGTGTATGT+GGG	0.672215	5_4:-57772746	Msa0859430:CDS
AAAATCGTTGTTTCTTGATC+TGG	0.267883	5_4:-57772800	Msa0859430:five_prime_UTR
AAATCGTTGTTTCTTGATCT+GGG	0.424283	5_4:-57772799	Msa0859430:five_prime_UTR
AACTCCGGCAAGATCACAGA+AGG	0.607086	5_4:+57772627	None:intergenic
AATTTGTAGCATGAAAGAAC+TGG	0.532873	5_4:+57769041	None:intergenic
ACAGAGTTATCAGTGGGTAA+AGG	0.592297	5_4:-57769928	Msa0859430:CDS
ACCAATTTCACATTCGGAGC+CGG	0.454900	5_4:-57769382	Msa0859430:CDS
ACCGGCTCCGAATGTGAAAT+TGG	0.314708	5_4:+57769381	None:intergenic
ACCTGATGAAGTCTAGAGGA+TGG	0.538234	5_4:-57769959	Msa0859430:CDS
ACTACCACAGAGTTATCAGT+GGG	0.704787	5_4:-57769934	Msa0859430:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCCTCAATGTAAGAATCA+TGG	-	chr5_4:57769597-57769616	Msa0859430:intron	30.0%
AAACCATGATTCTTACATTG+AGG	+	chr5_4:57769603-57769622	None:intergenic	30.0%
TTCAAATAGCAATTATGGCA+CGG	+	chr5_4:57769866-57769885	None:intergenic	30.0%
GTTACGTCATAATGTCTATT+TGG	+	chr5_4:57769930-57769949	None:intergenic	30.0%
GAATTTATGGGTTTCTTGAT+TGG	-	chr5_4:57770303-57770322	Msa0859430:intron	30.0%
TTTATGCATTTGGATTGTTG+TGG	-	chr5_4:57770346-57770365	Msa0859430:intron	30.0%
AACAAGTTTGTGTCAATTAG+AGG	+	chr5_4:57770613-57770632	None:intergenic	30.0%
TCATATTATCTCCTATGCTA+GGG	-	chr5_4:57770666-57770685	Msa0859430:intron	30.0%
GCCTACTAAATGTATATACA+AGG	-	chr5_4:57770739-57770758	Msa0859430:CDS	30.0%
ATACAAGGATCAAGTACAAA+TGG	-	chr5_4:57770754-57770773	Msa0859430:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	57769009	57773148	57769009	ID=Msa0859430;Name=Msa0859430
chr5_4	mRNA	57769009	57773148	57769009	ID=Msa0859430-mRNA-1;Parent=Msa0859430;Name=Msa0859430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=361\|1\|1\|1\|1\|1\|5\|291\|270
chr5_4	exon	57769009	57769610	57769009	ID=Msa0859430-mRNA-1:exon:17583;Parent=Msa0859430-mRNA-1
chr5_4	exon	57769898	57770004	57769898	ID=Msa0859430-mRNA-1:exon:17582;Parent=Msa0859430-mRNA-1
chr5_4	exon	57770215	57770272	57770215	ID=Msa0859430-mRNA-1:exon:17581;Parent=Msa0859430-mRNA-1
chr5_4	exon	57770721	57770820	57770721	ID=Msa0859430-mRNA-1:exon:17580;Parent=Msa0859430-mRNA-1
chr5_4	exon	57772551	57773148	57772551	ID=Msa0859430-mRNA-1:exon:17579;Parent=Msa0859430-mRNA-1
chr5_4	five_prime_UTR	57772788	57773148	57772788	ID=Msa0859430-mRNA-1:five_prime_utr;Parent=Msa0859430-mRNA-1
chr5_4	CDS	57772551	57772787	57772551	ID=Msa0859430-mRNA-1:cds;Parent=Msa0859430-mRNA-1
chr5_4	CDS	57770721	57770820	57770721	ID=Msa0859430-mRNA-1:cds;Parent=Msa0859430-mRNA-1
chr5_4	CDS	57770215	57770272	57770215	ID=Msa0859430-mRNA-1:cds;Parent=Msa0859430-mRNA-1
chr5_4	CDS	57769898	57770004	57769898	ID=Msa0859430-mRNA-1:cds;Parent=Msa0859430-mRNA-1
chr5_4	CDS	57769300	57769610	57769300	ID=Msa0859430-mRNA-1:cds;Parent=Msa0859430-mRNA-1
chr5_4	three_prime_UTR	57769009	57769299	57769009	ID=Msa0859430-mRNA-1:three_prime_utr;Parent=Msa0859430-mRNA-1

Gene Sequence

>Msa0859430

ATGAGGAAAAGAGAGAGGGAAAACCCTTGTGGTGTATGTGGGCACTATCACAAAGTTGAAGAAGGTGAAGTGTGCGGGATTTGTGGTCATAGTGTTCCGATTGGATCGGAGAAAACTTCGTTGCAAGTTAGTGCTTTTCCTTCTGTGATCTTGCCGGAGTTTCTTTACTTGGGAAGCTATGATAATGCTTCACGGTCTGAGCTTCTCAAAACTCAGGGGATTTCACGTATCCTCAATACTGTCCCTTCTTGTCAAAATCTCTACAAGAACTCATTTACCTATCACTGCCTCCCAGATGACAAAAGTTTCCAGTTTGAGGAAGCAAACCAGTTTCTGGAGCAATGTGAGAGGGATAAGGAGCGTGTTCTGGTTCATTGCATGTCAGGAAAGAGTAGGTCCCCAGCTGTCGTGATTGGCTACCTGATGAAGTCTAGAGGATGGAGACTACCACAGAGTTATCAGTGGGTAAAGGAACGTAGACCTGCGGTTGAATTGTCTGAAGGTGCCCACCAGCAACTACAGGAGTACGAAAAAAAGCTATTTGGATCAGTGGGAAGCAGTCTGCAGCTGCCTGTTGTTTTCTCACCTGCAGAAGGGCCACATCTTAGCTTTGGCTTCCCAAAGACAAATGATATAGCTCCACTTCCTGCCTTCGGCTGCACTACAACTCCTTCAATTTTCTCTCGAGCACCCTCCGACATAGCTCCGACCAATTTCACATTCGGAGCCGGTCAGAATGTCACTGGAAGTAGTCCTTTTAATACAAATCCATCTAATCCTAATGTTACCGATATTCAGATGGATGGATCTTGA

Protein sequence

>Msa0859430

MRKRERENPCGVCGHYHKVEEGEVCGICGHSVPIGSEKTSLQVSAFPSVILPEFLYLGSYDNASRSELLKTQGISRILNTVPSCQNLYKNSFTYHCLPDDKSFQFEEANQFLEQCERDKERVLVHCMSGKSRSPAVVIGYLMKSRGWRLPQSYQWVKERRPAVELSEGAHQQLQEYEKKLFGSVGSSLQLPVVFSPAEGPHLSFGFPKTNDIAPLPAFGCTTTPSIFSRAPSDIAPTNFTFGAGQNVTGSSPFNTNPSNPNVTDIQMDGS*