AlfalfaGEDB | Msa0270440

M. sativa cultivar zhongmu-4 / Msa0270440

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0012505 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872
PFAM: PF07946.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270440	XP_003592937.2	97.028	471	11	2	1	471	1	468	0.0	939

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270440	sp\|Q94CC0\|Y5994_ARATH	57.987	457	174	6	31	470	24	479	1.27e-176	506

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270440	G7INA2	97.028	471	11	2	1	471	1	468	0.0	939

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004280	Msa0270440	-0.800151	1.648679e-48	-8.615850e-47
Msa0006700	Msa0270440	-0.805350	1.392547e-49	-8.615850e-47
Msa0038350	Msa0270440	0.815998	6.934232e-52	-8.615850e-47
Msa0039420	Msa0270440	0.819768	9.765082e-53	-8.615850e-47
Msa0077390	Msa0270440	-0.845319	4.372664e-59	-8.615850e-47
Msa0088550	Msa0270440	-0.800132	1.663314e-48	-8.615850e-47
Msa0094100	Msa0270440	-0.838421	2.904913e-57	-8.615850e-47
Msa0101810	Msa0270440	0.819172	1.335161e-52	-8.615850e-47
Msa0105340	Msa0270440	-0.807212	5.644687e-50	-8.615850e-47
Msa0106120	Msa0270440	0.817100	3.928562e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270440	MtrunA17_Chr2g0277181	97.028	471	11	2	1	471	1	468	0.0	939

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0270440	AT4G24330.1	58.996	478	181	6	5	470	3	477	0.0	578
Msa0270440	AT5G49945.1	57.987	457	174	6	31	470	24	479	1.29e-177	506

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Find 147 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTAAGGAAATTCATT+AGG	0.336515	2_3:+1686244	None:intergenic
AAAGATGATGGAGGAGGCTG+AGG	0.501171	2_3:-1686667	Msa0270440:CDS
AAATCAGGGTGTGGTTGAGT+GGG	0.568472	2_3:+1688796	None:intergenic
AAATCGAAGGTGGTGGTTGA+AGG	0.457098	2_3:+1688847	None:intergenic
AACCACCACCTTCGATTTCT+GGG	0.331040	2_3:-1688842	Msa0270440:CDS
AACTACAACGTTCGTTGGGT+GGG	0.428555	2_3:+1686503	None:intergenic
AAGATACTGTCAAGGGTTGT+TGG	0.469800	2_3:-1688455	Msa0270440:CDS
AAGATATAAATTGAGTTCTC+AGG	0.467578	2_3:-1686906	Msa0270440:intron
AAGCTATGCATAAGGATTAT+AGG	0.261825	2_3:-1688282	Msa0270440:CDS
AAGGAGAAGGAGTAGGATTA+GGG	0.264529	2_3:+1688902	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATTACTTCACTGGTAAAA+AGG	-	chr2_3:1686709-1686728	Msa0270440:CDS	30.0%
AAGCTATGCATAAGGATTAT+AGG	-	chr2_3:1687065-1687084	Msa0270440:CDS	30.0%
AGCTATGCATAAGGATTATA+GGG	-	chr2_3:1687066-1687085	Msa0270440:CDS	30.0%
AGTTGTCTTGGCTTATAATT+TGG	-	chr2_3:1687386-1687405	Msa0270440:intron	30.0%
GGATCAAATTACCTCATAAT+TGG	-	chr2_3:1687615-1687634	Msa0270440:intron	30.0%
CTTATAGAAACGGTTTAATG+TGG	+	chr2_3:1687805-1687824	None:intergenic	30.0%
TTCTATAAGTTATCACAGAG+AGG	-	chr2_3:1687816-1687835	Msa0270440:intron	30.0%
TCTATAAGTTATCACAGAGA+GGG	-	chr2_3:1687817-1687836	Msa0270440:intron	30.0%
GTTATACAGAAACCACATAA+AGG	+	chr2_3:1687953-1687972	None:intergenic	30.0%
TCTGTATAACAGTATACCTT+TGG	-	chr2_3:1687963-1687982	Msa0270440:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	1686148	1689221	1686148	ID=Msa0270440;Name=Msa0270440
chr2_3	mRNA	1686148	1689221	1686148	ID=Msa0270440-mRNA-1;Parent=Msa0270440;Name=Msa0270440-mRNA-1;_AED=0.03;_eAED=0.03;_QI=88\|1\|1\|1\|1\|1\|3\|418\|471
chr2_3	exon	1686148	1686796	1686148	ID=Msa0270440-mRNA-1:exon:768;Parent=Msa0270440-mRNA-1
chr2_3	exon	1686907	1687110	1686907	ID=Msa0270440-mRNA-1:exon:767;Parent=Msa0270440-mRNA-1
chr2_3	exon	1688153	1689221	1688153	ID=Msa0270440-mRNA-1:exon:766;Parent=Msa0270440-mRNA-1
chr2_3	five_prime_UTR	1689134	1689221	1689134	ID=Msa0270440-mRNA-1:five_prime_utr;Parent=Msa0270440-mRNA-1
chr2_3	CDS	1688153	1689133	1688153	ID=Msa0270440-mRNA-1:cds;Parent=Msa0270440-mRNA-1
chr2_3	CDS	1686907	1687110	1686907	ID=Msa0270440-mRNA-1:cds;Parent=Msa0270440-mRNA-1
chr2_3	CDS	1686566	1686796	1686566	ID=Msa0270440-mRNA-1:cds;Parent=Msa0270440-mRNA-1
chr2_3	three_prime_UTR	1686148	1686565	1686148	ID=Msa0270440-mRNA-1:three_prime_utr;Parent=Msa0270440-mRNA-1

Gene Sequence

>Msa0270440

ATGGCAAATCCAAAACTCTTTTTCTTTTTCTTCTTCCTCGCTTCACTTTCACTATGCATCTTCTCAACCTTTGTTCAATCCGATTCTCATTTCGAAGGTTTCGAAGCCGAAGACGATGACGGTGAATTCGAAGAACCTTCCATCGATCCAGCTTCTCTCCGATCACCTCCTTCTCAATTTCTCTCCACCGATCCCAATCCCAATCCAAACCCTAATCCTACTCCTTCTCCTTCTCCACCCTCCGATCTTCCCAAATCCACTCCTCCTTCAACCACCACCTTCGATTTCTGGGACGACGATGAATTCGAAGGTCTTCCCACTCAACCACACCCTGATTTCCAAGTTCCAACCACCGATCCCAAATCCACCGATAACACCAACACCACCGCTTCTGATAATCAAAACGTTAAGCCTCAACCACGTTCCTTCACCGTTGAGATCCTTTGCGGTAGTTTTCTTATCATGTTCGCTCTCAATTACTTCACTGGTAAAAAGGATAACGAGAACATAGCACTTTCATGGGCTTCACAGTTTGCTGCTAAAGATTCAATTTTTGAGAAAAATTTCAGTCTTTTAGGGATCGGCGATGGCGGGGATGATACTCCTTTGTTGTTGAAAGAAGGCCAAACAACGTTTAAGTTTTATGCTAGTGGAAGAAGATACTGTCAAGGGTTGTTGGCAACTATGGAGTTGAAGAGTAGACATGATCTTATTGCTAGGATTTATAATATGGTTGTTCCTTCAAAAGATGAGATTACTTTTGAGGTTTATATGAATGATGATGCTATGGATCATGTTGTTTTTGCTATGGCTAGAAAAAAAGCTGCTAAAGCTATGCATAAGGATTATAGGGATTTGCAGAGGTTTGCTACTATTATGACTCCTCCTACTTCAAGGAAGTGGGTTTCTGATGACCTTGCTGTTATTTCTGAGTCTAGGGAAGTTGCTTCTGATTTGATCACTGATGCACTCATTGACCAGGTTTTTGGTGACAAGTCTTTTGAGAAATTTGGAAAAGGATTAATTTCAGTGCATTTCTCCGACAATCACCCTGGCATACACAAGAAAGTATTGCTGTTCAGGTTTGTTCTTCCAGCCGCTAAAAACATGGCTGATATGACTCGACTGGTGGCTCTTGTTCCGTATTATATTGACTTGATTGGAAGATATAAATTGAGTTCTCAGGCCCGGTCTAAGACAGAGGCTGCACGCCAAAAGGTTGCCCAAGAGGTACAGAAAGAACTTCGAAATATCCAACAAGAGGCCATGCAAAGAAGAAAGGCAGAGAGGAAAAAGATGATGGAGGAGGCTGAGGCAAAGCTTGGTGCAGAGGCCATTCGAAAGAAAGAAGCAAAAGATCGTGCTCGCCAAATGAAAAAGGCAATGCCAAGAATGAAAATGTCCCGTGGTGCCTAA

Protein sequence

>Msa0270440

MANPKLFFFFFFLASLSLCIFSTFVQSDSHFEGFEAEDDDGEFEEPSIDPASLRSPPSQFLSTDPNPNPNPNPTPSPSPPSDLPKSTPPSTTTFDFWDDDEFEGLPTQPHPDFQVPTTDPKSTDNTNTTASDNQNVKPQPRSFTVEILCGSFLIMFALNYFTGKKDNENIALSWASQFAAKDSIFEKNFSLLGIGDGGDDTPLLLKEGQTTFKFYASGRRYCQGLLATMELKSRHDLIARIYNMVVPSKDEITFEVYMNDDAMDHVVFAMARKKAAKAMHKDYRDLQRFATIMTPPTSRKWVSDDLAVISESREVASDLITDALIDQVFGDKSFEKFGKGLISVHFSDNHPGIHKKVLLFRFVLPAAKNMADMTRLVALVPYYIDLIGRYKLSSQARSKTEAARQKVAQEVQKELRNIQQEAMQRRKAERKKMMEEAEAKLGAEAIRKKEAKDRARQMKKAMPRMKMSRGA*