Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444060 | sp|E0X9N4|C3H69_ARATH | 49.593 | 369 | 153 | 9 | 1 | 357 | 1 | 348 | 5.92e-108 | 327 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444060 | G7IWL7 | 97.723 | 483 | 8 | 2 | 1 | 482 | 1 | 481 | 0.0 | 979 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1444060 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054730 | Msa1444060 | 0.808432 | 3.106884e-50 | -8.615850e-47 |
| Msa0077390 | Msa1444060 | -0.832483 | 9.213044e-56 | -8.615850e-47 |
| Msa0090040 | Msa1444060 | 0.807827 | 4.179041e-50 | -8.615850e-47 |
| Msa0106370 | Msa1444060 | 0.848350 | 6.482260e-60 | -8.615850e-47 |
| Msa1371080 | Msa1444060 | 0.829884 | 4.009751e-55 | -8.615850e-47 |
| Msa1400460 | Msa1444060 | -0.800555 | 1.364168e-48 | -8.615850e-47 |
| Msa1424000 | Msa1444060 | -0.811996 | 5.294143e-51 | -8.615850e-47 |
| Msa1438270 | Msa1444060 | -0.812058 | 5.132739e-51 | -8.615850e-47 |
| Msa1444060 | Msa1445250 | -0.809956 | 1.464485e-50 | -8.615850e-47 |
| Msa1444060 | Msa1447440 | -0.809148 | 2.183522e-50 | -8.615850e-47 |
| Msa1444060 | Msa1451620 | 0.817642 | 2.966403e-52 | -8.615850e-47 |
| Msa1444060 | Msa1457070 | -0.819376 | 1.200115e-52 | -8.615850e-47 |
| Msa1444060 | Msa1457670 | 0.800096 | 1.691343e-48 | -8.615850e-47 |
| Msa1444060 | Msa1460310 | 0.809245 | 2.081238e-50 | -8.615850e-47 |
| Msa0607540 | Msa1444060 | -0.825234 | 5.237754e-54 | -8.615850e-47 |
| Msa0616560 | Msa1444060 | 0.841341 | 5.038988e-58 | -8.615850e-47 |
| Msa0626230 | Msa1444060 | -0.805180 | 1.512051e-49 | -8.615850e-47 |
| Msa0640380 | Msa1444060 | -0.841249 | 5.328822e-58 | -8.615850e-47 |
| Msa0641020 | Msa1444060 | -0.819405 | 1.181674e-52 | -8.615850e-47 |
| Msa0647830 | Msa1444060 | -0.837762 | 4.293339e-57 | -8.615850e-47 |
| Msa0655990 | Msa1444060 | 0.835083 | 2.062703e-56 | -8.615850e-47 |
| Msa0660880 | Msa1444060 | 0.802124 | 6.509848e-49 | -8.615850e-47 |
| Msa0662650 | Msa1444060 | -0.802949 | 4.400407e-49 | -8.615850e-47 |
| Msa0678820 | Msa1444060 | -0.852205 | 5.377211e-61 | -8.615850e-47 |
| Msa0688550 | Msa1444060 | -0.811928 | 5.477940e-51 | -8.615850e-47 |
| Msa0690440 | Msa1444060 | -0.837264 | 5.758580e-57 | -8.615850e-47 |
| Msa0699920 | Msa1444060 | 0.830635 | 2.628894e-55 | -8.615850e-47 |
| Msa0708860 | Msa1444060 | -0.805079 | 1.587275e-49 | -8.615850e-47 |
| Msa0715720 | Msa1444060 | -0.812402 | 4.316104e-51 | -8.615850e-47 |
| Msa0716740 | Msa1444060 | 0.804962 | 1.679381e-49 | -8.615850e-47 |
| Msa0722930 | Msa1444060 | -0.831152 | 1.962519e-55 | -8.615850e-47 |
| Msa0723140 | Msa1444060 | -0.841871 | 3.652170e-58 | -8.615850e-47 |
| Msa0723210 | Msa1444060 | -0.815066 | 1.118077e-51 | -8.615850e-47 |
| Msa0744500 | Msa1444060 | -0.803338 | 3.655577e-49 | -8.615850e-47 |
| Msa0773610 | Msa1444060 | -0.805029 | 1.626234e-49 | -8.615850e-47 |
| Msa0790240 | Msa1444060 | -0.802437 | 5.612769e-49 | -8.615850e-47 |
| Msa0799290 | Msa1444060 | 0.806322 | 8.702406e-50 | -8.615850e-47 |
| Msa0812760 | Msa1444060 | -0.812679 | 3.755989e-51 | -8.615850e-47 |
| Msa0826650 | Msa1444060 | -0.808238 | 3.416360e-50 | -8.615850e-47 |
| Msa0828570 | Msa1444060 | -0.811717 | 6.087003e-51 | -8.615850e-47 |
| Msa0835920 | Msa1444060 | -0.818237 | 2.177241e-52 | -8.615850e-47 |
| Msa0837510 | Msa1444060 | 0.805843 | 1.097373e-49 | -8.615850e-47 |
| Msa0839330 | Msa1444060 | -0.810869 | 9.302667e-51 | -8.615850e-47 |
| Msa0138230 | Msa1444060 | -0.803259 | 3.797147e-49 | -8.615850e-47 |
| Msa0153000 | Msa1444060 | 0.814337 | 1.621770e-51 | -8.615850e-47 |
| Msa0153440 | Msa1444060 | -0.813545 | 2.425078e-51 | -8.615850e-47 |
| Msa0170320 | Msa1444060 | -0.811915 | 5.512652e-51 | -8.615850e-47 |
| Msa0178350 | Msa1444060 | -0.810680 | 1.022008e-50 | -8.615850e-47 |
| Msa0179860 | Msa1444060 | -0.825125 | 5.557510e-54 | -8.615850e-47 |
| Msa0185640 | Msa1444060 | 0.860532 | 1.935122e-63 | -8.615850e-47 |
| Msa0226250 | Msa1444060 | -0.806207 | 9.202096e-50 | -8.615850e-47 |
| Msa0226620 | Msa1444060 | 0.800605 | 1.332386e-48 | -8.615850e-47 |
| Msa1249940 | Msa1444060 | -0.804314 | 2.292818e-49 | -8.615850e-47 |
| Msa1252070 | Msa1444060 | -0.801190 | 1.012210e-48 | -8.615850e-47 |
| Msa1254950 | Msa1444060 | -0.811413 | 7.089573e-51 | -8.615850e-47 |
| Msa1256540 | Msa1444060 | 0.859671 | 3.519176e-63 | -8.615850e-47 |
| Msa1257870 | Msa1444060 | 0.801164 | 1.024293e-48 | -8.615850e-47 |
| Msa1271280 | Msa1444060 | -0.806783 | 6.955435e-50 | -8.615850e-47 |
| Msa1296960 | Msa1444060 | 0.866489 | 2.747350e-65 | -8.615850e-47 |
| Msa1308480 | Msa1444060 | -0.805320 | 1.413341e-49 | -8.615850e-47 |
| Msa1327770 | Msa1444060 | -0.810721 | 1.001118e-50 | -8.615850e-47 |
| Msa1335970 | Msa1444060 | 0.805556 | 1.260807e-49 | -8.615850e-47 |
| Msa1336470 | Msa1444060 | -0.823677 | 1.217929e-53 | -8.615850e-47 |
| Msa1340530 | Msa1444060 | -0.805188 | 1.505639e-49 | -8.615850e-47 |
| Msa0438050 | Msa1444060 | -0.800911 | 1.153906e-48 | -8.615850e-47 |
| Msa0455230 | Msa1444060 | -0.803787 | 2.950590e-49 | -8.615850e-47 |
| Msa0465680 | Msa1444060 | 0.831325 | 1.779910e-55 | -8.615850e-47 |
| Msa0465970 | Msa1444060 | -0.801443 | 8.984455e-49 | -8.615850e-47 |
| Msa0980440 | Msa1444060 | -0.804596 | 2.002737e-49 | -8.615850e-47 |
| Msa0996830 | Msa1444060 | 0.804852 | 1.770315e-49 | -8.615850e-47 |
| Msa1008340 | Msa1444060 | -0.814162 | 1.772545e-51 | -8.615850e-47 |
| Msa1008490 | Msa1444060 | -0.808924 | 2.438411e-50 | -8.615850e-47 |
| Msa1036390 | Msa1444060 | -0.822537 | 2.246793e-53 | -8.615850e-47 |
| Msa1037710 | Msa1444060 | -0.807694 | 4.459533e-50 | -8.615850e-47 |
| Msa1049950 | Msa1444060 | -0.810680 | 1.022048e-50 | -8.615850e-47 |
| Msa1054410 | Msa1444060 | -0.823468 | 1.362748e-53 | -8.615850e-47 |
| Msa1055430 | Msa1444060 | -0.826613 | 2.464102e-54 | -8.615850e-47 |
| Msa1075080 | Msa1444060 | 0.807435 | 5.061198e-50 | -8.615850e-47 |
| Msa1075220 | Msa1444060 | 0.802729 | 4.886663e-49 | -8.615850e-47 |
| Msa1076680 | Msa1444060 | -0.813136 | 2.981650e-51 | -8.615850e-47 |
| Msa1081710 | Msa1444060 | -0.831957 | 1.243270e-55 | -8.615850e-47 |
| Msa1083410 | Msa1444060 | -0.819420 | 1.172225e-52 | -8.615850e-47 |
| Msa1101620 | Msa1444060 | -0.801024 | 1.094549e-48 | -8.615850e-47 |
| Msa0260270 | Msa1444060 | 0.809711 | 1.653346e-50 | -8.615850e-47 |
| Msa0264940 | Msa1444060 | 0.805003 | 1.646109e-49 | -8.615850e-47 |
| Msa0266000 | Msa1444060 | 0.805991 | 1.021820e-49 | -8.615850e-47 |
| Msa0270440 | Msa1444060 | 0.803448 | 3.469568e-49 | -8.615850e-47 |
| Msa0296160 | Msa1444060 | -0.802615 | 5.157034e-49 | -8.615850e-47 |
| Msa0302990 | Msa1444060 | 0.810052 | 1.395843e-50 | -8.615850e-47 |
| Msa0304740 | Msa1444060 | -0.822160 | 2.747557e-53 | -8.615850e-47 |
| Msa0331590 | Msa1444060 | -0.812634 | 3.840535e-51 | -8.615850e-47 |
| Msa0331920 | Msa1444060 | -0.815184 | 1.052716e-51 | -8.615850e-47 |
| Msa0334570 | Msa1444060 | -0.804094 | 2.547535e-49 | -8.615850e-47 |
| Msa0342340 | Msa1444060 | 0.859358 | 4.372215e-63 | -8.615850e-47 |
| Msa0354800 | Msa1444060 | 0.811146 | 8.101885e-51 | -8.615850e-47 |
| Msa0362740 | Msa1444060 | -0.820177 | 7.872771e-53 | -8.615850e-47 |
| Msa0363460 | Msa1444060 | -0.804589 | 2.009318e-49 | -8.615850e-47 |
| Msa1128160 | Msa1444060 | -0.808608 | 2.848958e-50 | -8.615850e-47 |
| Msa1139240 | Msa1444060 | -0.819304 | 1.246180e-52 | -8.615850e-47 |
| Msa1165360 | Msa1444060 | -0.810730 | 9.967488e-51 | -8.615850e-47 |
| Msa1167110 | Msa1444060 | 0.808925 | 2.436899e-50 | -8.615850e-47 |
| Msa1204980 | Msa1444060 | 0.853739 | 1.957724e-61 | -8.615850e-47 |
| Msa1205010 | Msa1444060 | 0.847400 | 1.184225e-59 | -8.615850e-47 |
| Msa1208340 | Msa1444060 | -0.803232 | 3.845572e-49 | -8.615850e-47 |
| Msa1212840 | Msa1444060 | -0.811199 | 7.887637e-51 | -8.615850e-47 |
| Msa0524890 | Msa1444060 | 0.817820 | 2.704977e-52 | -8.615850e-47 |
| Msa0528970 | Msa1444060 | -0.840221 | 9.906171e-58 | -8.615850e-47 |
| Msa0540070 | Msa1444060 | -0.850028 | 2.213030e-60 | -8.615850e-47 |
| Msa0543900 | Msa1444060 | -0.859385 | 4.289721e-63 | -8.615850e-47 |
| Msa0553460 | Msa1444060 | -0.841678 | 4.108316e-58 | -8.615850e-47 |
| Msa0562650 | Msa1444060 | -0.802805 | 4.713570e-49 | -8.615850e-47 |
| Msa0563140 | Msa1444060 | -0.824046 | 9.980284e-54 | -8.615850e-47 |
| Msa0564510 | Msa1444060 | -0.850846 | 1.304105e-60 | -8.615850e-47 |
| Msa0566500 | Msa1444060 | 0.805787 | 1.127879e-49 | -8.615850e-47 |
| Msa0599770 | Msa1444060 | -0.856601 | 2.882024e-62 | -8.615850e-47 |
| Msa0843280 | Msa1444060 | -0.851425 | 8.947670e-61 | -8.615850e-47 |
| Msa0859430 | Msa1444060 | 0.814352 | 1.609345e-51 | -8.615850e-47 |
| Msa0864480 | Msa1444060 | 0.818008 | 2.452311e-52 | -8.615850e-47 |
| Msa0864690 | Msa1444060 | -0.807776 | 4.284656e-50 | -8.615850e-47 |
| Msa0885130 | Msa1444060 | -0.801498 | 8.754359e-49 | -8.615850e-47 |
| Msa0885270 | Msa1444060 | -0.815742 | 7.910189e-52 | -8.615850e-47 |
| Msa0886660 | Msa1444060 | -0.841025 | 6.102655e-58 | -8.615850e-47 |
| Msa0902980 | Msa1444060 | -0.821439 | 4.035864e-53 | -8.615850e-47 |
| Msa0935370 | Msa1444060 | -0.823065 | 1.692864e-53 | -8.615850e-47 |
| Msa0946120 | Msa1444060 | -0.821125 | 4.768375e-53 | -8.615850e-47 |
| Msa0951720 | Msa1444060 | -0.819701 | 1.011615e-52 | -8.615850e-47 |
| Msa0961420 | Msa1444060 | 0.808584 | 2.882681e-50 | -8.615850e-47 |
| Msa0962190 | Msa1444060 | 0.810733 | 9.954993e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444060 | MtrunA17_Chr3g0087881 | 91.304 | 483 | 11 | 2 | 1 | 482 | 1 | 453 | 0.0 | 904 |
| Msa1444060 | MtrunA17_Chr3g0087891 | 52.888 | 329 | 126 | 8 | 1 | 307 | 1 | 322 | 5.86e-106 | 319 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1444060 | AT3G08505.1 | 51.125 | 311 | 125 | 8 | 1 | 307 | 1 | 288 | 2.74e-99 | 301 |
| Msa1444060 | AT3G08505.2 | 51.125 | 311 | 125 | 8 | 1 | 307 | 1 | 288 | 2.74e-99 | 301 |
| Msa1444060 | AT3G08505.3 | 51.125 | 311 | 125 | 8 | 1 | 307 | 1 | 288 | 2.74e-99 | 301 |
Find 121 sgRNAs with CRISPR-Local
Find 411 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCAAGAGGCCATGGTTTC+TGG | 0.092914 | tig0030651:-30867 | Msa1444060:CDS |
| AATCTTTCCATAGGGTATTA+TGG | 0.172622 | tig0030651:+30452 | None:intergenic |
| CCTGCATCCTACTGATAAAA+AGG | 0.246259 | tig0030651:-34617 | Msa1444060:CDS |
| GTTTCTGGGATAGATGATTT+TGG | 0.250360 | tig0030651:-30852 | Msa1444060:CDS |
| CAGAAAGGGTCTTGTGCTTA+TGG | 0.259648 | tig0030651:-34961 | Msa1444060:CDS |
| GATTCGCTGGCTGGCGGTTC+AGG | 0.263297 | tig0030651:-31047 | Msa1444060:CDS |
| GTGCTAAAGTAGCATCAAAT+TGG | 0.277566 | tig0030651:-34849 | Msa1444060:CDS |
| ATCTTTCCATAGGGTATTAT+GGG | 0.286860 | tig0030651:+30453 | None:intergenic |
| TAAGCCAAAACTCCTTAAAA+TGG | 0.290440 | tig0030651:+30528 | None:intergenic |
| AGCATCATCTTCAGCATCTA+TGG | 0.292528 | tig0030651:-34902 | Msa1444060:CDS |
| TTTGAGGACTTGTGACAAAA+AGG | 0.300862 | tig0030651:-34581 | Msa1444060:CDS |
| GCTCTTGGGATGGATGCTTT+TGG | 0.301364 | tig0030651:-30942 | Msa1444060:CDS |
| TTGTCATTCCAAGTGGTATT+TGG | 0.301592 | tig0030651:-34318 | Msa1444060:CDS |
| AAGCCATCAGAATGTAAGTT+TGG | 0.301620 | tig0030651:-34481 | Msa1444060:CDS |
| TGGCGGTTCAGGTCCTTGTT+TGG | 0.314287 | tig0030651:-31036 | Msa1444060:CDS |
| GGCGGTTCAGGTCCTTGTTT+GGG | 0.319796 | tig0030651:-31035 | Msa1444060:CDS |
| GGAAATGGAAATTGTCCATT+TGG | 0.321258 | tig0030651:-34108 | Msa1444060:CDS |
| TCCTCATCGTCATCGTCATC+AGG | 0.328553 | tig0030651:+30918 | None:intergenic |
| AGGTGACACAACTTAGTTAA+AGG | 0.354092 | tig0030651:+30647 | None:intergenic |
| ATGCAAGAGGCCATGGCTCT+TGG | 0.356930 | tig0030651:-30957 | Msa1444060:CDS |
| TATGATAGTTTGCGGCAAAC+AGG | 0.366308 | tig0030651:+34343 | None:intergenic |
| CAGAAAGCGTGATCACATTC+TGG | 0.369919 | tig0030651:+34451 | None:intergenic |
| GAAATGGAAATTGTCCATTT+GGG | 0.373127 | tig0030651:-34107 | Msa1444060:CDS |
| GTTTGTCATGTATTCGCAAT+TGG | 0.373825 | tig0030651:-34429 | Msa1444060:CDS |
| CGATTTCCATTGCAGAGGTT+GGG | 0.374375 | tig0030651:+34395 | None:intergenic |
| CCCTTTACACCACGCTTGTC+AGG | 0.379427 | tig0030651:+34799 | None:intergenic |
| AAACTTACATTCTGATGGCT+TGG | 0.395562 | tig0030651:+34483 | None:intergenic |
| CCTGACAAGCGTGGTGTAAA+GGG | 0.396694 | tig0030651:-34799 | Msa1444060:CDS |
| TGCAAGAGGCCATGGTTTCT+GGG | 0.408782 | tig0030651:-30866 | Msa1444060:CDS |
| AACTTACATTCTGATGGCTT+GGG | 0.410250 | tig0030651:+34484 | None:intergenic |
| TGCAAGAGGCCATGGCTCTT+GGG | 0.417374 | tig0030651:-30956 | Msa1444060:CDS |
| AATGATGATGCATTCTCATA+TGG | 0.418914 | tig0030651:-30781 | Msa1444060:CDS |
| TCAATTCCATGAAAATCATC+AGG | 0.425647 | tig0030651:+30828 | None:intergenic |
| ATAATACCCTATGGAAAGAT+TGG | 0.430057 | tig0030651:-30450 | Msa1444060:three_prime_UTR |
| TGATGAATATTAGATTTACT+TGG | 0.430199 | tig0030651:-30709 | Msa1444060:exon |
| ACCTGACAAGCGTGGTGTAA+AGG | 0.433230 | tig0030651:-34800 | Msa1444060:CDS |
| TCTTATGAAAATCATTTGGC+AGG | 0.435477 | tig0030651:-30618 | Msa1444060:three_prime_UTR |
| GATAATGCCATCATCTCAAA+TGG | 0.443626 | tig0030651:+31071 | None:intergenic |
| AAAATCTCACCATGTCCAAC+AGG | 0.444234 | tig0030651:-35935 | Msa1444060:intron |
| AGCCATCAGAATGTAAGTTT+GGG | 0.447348 | tig0030651:-34480 | Msa1444060:CDS |
| CCGATTTCCATTGCAGAGGT+TGG | 0.450187 | tig0030651:+34394 | None:intergenic |
| GATTCAGACGATGAGGATGA+TGG | 0.450779 | tig0030651:-31005 | Msa1444060:CDS |
| CCAACCTCTGCAATGGAAAT+CGG | 0.452415 | tig0030651:-34394 | Msa1444060:CDS |
| TTTGCTCTTATTATCAGAAA+GGG | 0.457240 | tig0030651:-34975 | Msa1444060:CDS |
| ACATGTCATGCATATCGAAA+TGG | 0.462288 | tig0030651:+31177 | None:intergenic |
| TGCTGCTATGCAAGAGGCCA+TGG | 0.469668 | tig0030651:-30964 | Msa1444060:CDS |
| ATTTGCTCTTATTATCAGAA+AGG | 0.469932 | tig0030651:-34976 | Msa1444060:CDS |
| TACCCTATGGAAAGATTGGT+TGG | 0.476893 | tig0030651:-30446 | Msa1444060:three_prime_UTR |
| GGGTTTACAACGCAAGCATC+AGG | 0.478209 | tig0030651:-34779 | Msa1444060:CDS |
| GCATTATCAGATTCGCTGGC+TGG | 0.489570 | tig0030651:-31056 | Msa1444060:CDS |
| TGCTAAAGTAGCATCAAATT+GGG | 0.490703 | tig0030651:-34848 | Msa1444060:CDS |
| AATGGATCCATTTGAGATGA+TGG | 0.491467 | tig0030651:-31078 | Msa1444060:CDS |
| GATTTCCATTGCAGAGGTTG+GGG | 0.493235 | tig0030651:+34396 | None:intergenic |
| TAGAAACAGCTAGCCCCAAA+TGG | 0.494880 | tig0030651:+34093 | None:intergenic |
| GGCTGCTATGCAAGAGGCCA+TGG | 0.495488 | tig0030651:-30874 | Msa1444060:CDS |
| TGGTCTAGCACTACCAGTAC+TGG | 0.497170 | tig0030651:+34735 | None:intergenic |
| TGTCTCCATGTGTATGAGCC+AGG | 0.499940 | tig0030651:+31230 | None:intergenic |
| TCCTCATCGTCTGAATCAAA+AGG | 0.507460 | tig0030651:+31011 | None:intergenic |
| AAACCAACCAATCTTTCCAT+AGG | 0.507522 | tig0030651:+30443 | None:intergenic |
| GAAGGAACCTTTGTAACCTT+CGG | 0.509713 | tig0030651:+34823 | None:intergenic |
| AGGGCAGGTTCTCACTGTAT+TGG | 0.515799 | tig0030651:+34363 | None:intergenic |
| GATGGCATTATCAGATTCGC+TGG | 0.519486 | tig0030651:-31060 | Msa1444060:CDS |
| GTGAATCCCATAATACCCTA+TGG | 0.520258 | tig0030651:-30459 | Msa1444060:three_prime_UTR |
| TAGTTTGCGGCAAACAGGGC+AGG | 0.521329 | tig0030651:+34348 | None:intergenic |
| TGACAAAATATGATAGTTTG+CGG | 0.523339 | tig0030651:+34335 | None:intergenic |
| AGGAAAAGGAAAATCATTTG+AGG | 0.527601 | tig0030651:-34597 | Msa1444060:CDS |
| AAAATCTGAGTCCCTCATGA+TGG | 0.533480 | tig0030651:+31109 | None:intergenic |
| TGGGGCTAGCTGTTTCTACA+AGG | 0.535393 | tig0030651:-34088 | Msa1444060:intron |
| CTGATGGCTTGGGTTTCGAA+AGG | 0.535450 | tig0030651:+34494 | None:intergenic |
| ATTCAGACGATGAGGATGAT+GGG | 0.536703 | tig0030651:-31004 | Msa1444060:CDS |
| GCGCGAGGCGTATGTTTGAA+AGG | 0.542739 | tig0030651:-35297 | Msa1444060:CDS |
| TTTGCTGCTGCCAACTGCCC+CGG | 0.543300 | tig0030651:-34691 | Msa1444060:CDS |
| TTCAGATTCTGCTGCGCCTG+TGG | 0.544702 | tig0030651:-34878 | Msa1444060:CDS |
| AACCCAAACTTACATTCTGA+TGG | 0.549424 | tig0030651:+34478 | None:intergenic |
| AACCAACCAATCTTTCCATA+GGG | 0.553971 | tig0030651:+30444 | None:intergenic |
| TTTCAGCATACAGTGAAGCC+TGG | 0.555178 | tig0030651:-31248 | Msa1444060:intron |
| ATGATAGTTTGCGGCAAACA+GGG | 0.556192 | tig0030651:+34344 | None:intergenic |
| GATATCAAAGCTGCATCCAT+AGG | 0.558891 | tig0030651:+30804 | None:intergenic |
| TCAAATTGCTGCTATGCAAG+AGG | 0.561508 | tig0030651:-30970 | Msa1444060:CDS |
| AGAACATCCACCGGGGCAGT+TGG | 0.563489 | tig0030651:+34681 | None:intergenic |
| TGGTATTTGGTTTACTACAA+AGG | 0.568402 | tig0030651:-34305 | Msa1444060:CDS |
| GATGCTACTAAACTTTAACT+AGG | 0.569840 | tig0030651:+30416 | None:intergenic |
| AGCATCAAATTGGGTTCCGA+AGG | 0.575611 | tig0030651:-34839 | Msa1444060:CDS |
| TGCGTTGAGGTGGTGGCCTG+CGG | 0.577755 | tig0030651:+31207 | None:intergenic |
| TAGTGCCCCAACCTCTGCAA+TGG | 0.580807 | tig0030651:-34401 | Msa1444060:CDS |
| TTTCGATATGCATGACATGT+TGG | 0.582133 | tig0030651:-31174 | Msa1444060:CDS |
| CCTCATCGTCATCGTCATCA+GGG | 0.582725 | tig0030651:+30919 | None:intergenic |
| TCGAATGGCTGCTATGCAAG+AGG | 0.583412 | tig0030651:-30880 | Msa1444060:CDS |
| AAGATGATGCTTGAGAAGCT+CGG | 0.587317 | tig0030651:+34914 | None:intergenic |
| AGAGGCCATGGCTCTTGGGA+TGG | 0.587677 | tig0030651:-30952 | Msa1444060:CDS |
| GGTCTTGTGCTTATGGTAGT+CGG | 0.588927 | tig0030651:-34954 | Msa1444060:CDS |
| TTGGGTTCCGAAGGTTACAA+AGG | 0.589756 | tig0030651:-34830 | Msa1444060:CDS |
| ACACCACGCTTGTCAGGTGA+AGG | 0.590498 | tig0030651:+34805 | None:intergenic |
| GGTGGATGTTCTCGTATTCA+CGG | 0.596225 | tig0030651:-34670 | Msa1444060:CDS |
| AGCATCCATCCCAAGAGCCA+TGG | 0.600499 | tig0030651:+30947 | None:intergenic |
| ATCATCTATCCCAGAAACCA+TGG | 0.600753 | tig0030651:+30857 | None:intergenic |
| TGAATACGAGAACATCCACC+GGG | 0.602886 | tig0030651:+34673 | None:intergenic |
| ACTTTAGCACTACGAGCCAC+AGG | 0.603612 | tig0030651:+34862 | None:intergenic |
| TTATCAGATTCGCTGGCTGG+CGG | 0.606192 | tig0030651:-31053 | Msa1444060:CDS |
| GCTGCTGCCAACTGCCCCGG+TGG | 0.606750 | tig0030651:-34688 | Msa1444060:CDS |
| TGAAGCCTGGCTCATACACA+TGG | 0.611090 | tig0030651:-31235 | Msa1444060:CDS |
| AAATGGAAATTGTCCATTTG+GGG | 0.614806 | tig0030651:-34106 | Msa1444060:CDS |
| GATGTCGGTGAATCCAGTAC+TGG | 0.616230 | tig0030651:-34748 | Msa1444060:CDS |
| ATAACTACAAGGCAAACTGC+AGG | 0.617185 | tig0030651:-34261 | Msa1444060:intron |
| CATGACATGTTGGATGTGCT+CGG | 0.619477 | tig0030651:-31164 | Msa1444060:CDS |
| GTAGTAAACCAAATACCACT+TGG | 0.621876 | tig0030651:+34310 | None:intergenic |
| GGAAATTATTGATAACTACA+AGG | 0.622897 | tig0030651:-34272 | Msa1444060:CDS |
| GAATCAAAAGGACCCAAACA+AGG | 0.628395 | tig0030651:+31023 | None:intergenic |
| CATCAGGACTGTACCGATGT+CGG | 0.630976 | tig0030651:-34763 | Msa1444060:CDS |
| AGTACTGGATTCACCGACAT+CGG | 0.632271 | tig0030651:+34750 | None:intergenic |
| GTGAATACGAGAACATCCAC+CGG | 0.635675 | tig0030651:+34672 | None:intergenic |
| GGTGAGGTTGATCTATCAAG+TGG | 0.638628 | tig0030651:-31143 | Msa1444060:CDS |
| ACTACCGATTTCCATTGCAG+AGG | 0.647818 | tig0030651:+34390 | None:intergenic |
| TGAGATTTACCTGTTGGACA+TGG | 0.648362 | tig0030651:+35926 | None:intergenic |
| CATACACATGGAGACACCGC+AGG | 0.651112 | tig0030651:-31223 | Msa1444060:CDS |
| CAATTCCATGAAAATCATCA+GGG | 0.655793 | tig0030651:+30829 | None:intergenic |
| GTTCCTTCACCTGACAAGCG+TGG | 0.673427 | tig0030651:-34808 | Msa1444060:CDS |
| CCCTGATGACGATGACGATG+AGG | 0.676584 | tig0030651:-30919 | Msa1444060:CDS |
| AGAAGAAGATGAAGATTACG+AGG | 0.692698 | tig0030651:-30751 | Msa1444060:CDS |
| CATGTTGGATGTGCTCGGTG+AGG | 0.698239 | tig0030651:-31159 | Msa1444060:CDS |
| GAATACGAGAACATCCACCG+GGG | 0.861616 | tig0030651:+34674 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAAAATTTTATTAAA+AGG | - | tig0030651:34894-34913 | Msa1444060:CDS | 0.0% |
| !!! | TTTATAAAATTTTATTAAAA+GGG | - | tig0030651:34895-34914 | Msa1444060:CDS | 0.0% |
| !!! | TTTAGGTTAATTTAATTTTA+GGG | - | tig0030651:30764-30783 | Msa1444060:CDS | 10.0% |
| !!! | ATTTTTGAAATTTAACTTTT+AGG | - | tig0030651:30812-30831 | Msa1444060:CDS | 10.0% |
| !!! | TTTTTGAAATTTAACTTTTA+GGG | - | tig0030651:30813-30832 | Msa1444060:CDS | 10.0% |
| !! | AACAACATAAATAATCAAAT+GGG | + | tig0030651:30590-30609 | None:intergenic | 15.0% |
| !! | TAACAACATAAATAATCAAA+TGG | + | tig0030651:30591-30610 | None:intergenic | 15.0% |
| !!! | GTTTAGGTTAATTTAATTTT+AGG | - | tig0030651:30763-30782 | Msa1444060:CDS | 15.0% |
| !!! | TCAAACATATTTTCAAAAAT+GGG | + | tig0030651:33296-33315 | None:intergenic | 15.0% |
| !!! | ATCAAACATATTTTCAAAAA+TGG | + | tig0030651:33297-33316 | None:intergenic | 15.0% |
| !!! | GTATTATTTTAATCTGAAAT+TGG | + | tig0030651:33974-33993 | None:intergenic | 15.0% |
| !! | ATTTCAGATTAAAATAATAC+TGG | - | tig0030651:33974-33993 | Msa1444060:intron | 15.0% |
| !!! | TTTTAGAAAAAAATTACCAA+GGG | + | tig0030651:34870-34889 | None:intergenic | 15.0% |
| !! | TCTCAAAAACTAATATAAAA+TGG | + | tig0030651:35056-35075 | None:intergenic | 15.0% |
| !!! | TTTTATATTAGTTTTTGAGA+TGG | - | tig0030651:35056-35075 | Msa1444060:intron | 15.0% |
| !!! | TTGTATGATTTTTGCAATTT+AGG | - | tig0030651:30541-30560 | Msa1444060:three_prime_UTR | 20.0% |
| !! | AAGTACATCATACAAAAAAA+AGG | + | tig0030651:30925-30944 | None:intergenic | 20.0% |
| !!! | AGTAATTGAAGATTATTTCT+TGG | - | tig0030651:30973-30992 | Msa1444060:CDS | 20.0% |
| !! | TTAAATCTATGAATTGTTTC+AGG | - | tig0030651:31032-31051 | Msa1444060:CDS | 20.0% |
| !! | TAAATCTATGAATTGTTTCA+GGG | - | tig0030651:31033-31052 | Msa1444060:CDS | 20.0% |
| !! | TGTATTTATATTGTTCTTAC+TGG | - | tig0030651:31348-31367 | Msa1444060:intron | 20.0% |
| !!! | TTACAAAACAAATTTTCATG+TGG | + | tig0030651:31655-31674 | None:intergenic | 20.0% |
| !! | ATCTGAAAGAGAAAAAAAAT+AGG | + | tig0030651:32213-32232 | None:intergenic | 20.0% |
| !! | AAATATAAAAGAAAGAGAGA+TGG | + | tig0030651:32307-32326 | None:intergenic | 20.0% |
| !!! | TCTTTCTTTTATATTTTCCT+TGG | - | tig0030651:32311-32330 | Msa1444060:intron | 20.0% |
| !! | TATTTCTTATTCTTAGAAGT+AGG | - | tig0030651:32574-32593 | Msa1444060:intron | 20.0% |
| !!! | CTTTAATTTAGAATATGGAT+TGG | - | tig0030651:32618-32637 | Msa1444060:intron | 20.0% |
| !!! | CAAGTTCTTTTACAAATTTT+AGG | + | tig0030651:32790-32809 | None:intergenic | 20.0% |
| !!! | AGTTTACATTTTTTTCTTAC+AGG | - | tig0030651:32839-32858 | Msa1444060:intron | 20.0% |
| !!! | GTTTACATTTTTTTCTTACA+GGG | - | tig0030651:32840-32859 | Msa1444060:intron | 20.0% |
| !!! | TTTACATTTTTTTCTTACAG+GGG | - | tig0030651:32841-32860 | Msa1444060:intron | 20.0% |
| !! | ATATAATACATATGTGTGTA+CGG | + | tig0030651:32905-32924 | None:intergenic | 20.0% |
| !! | TATTACTACTTGTCTTTAAT+TGG | - | tig0030651:33025-33044 | Msa1444060:intron | 20.0% |
| !! | AATCTCATCTAAAAAACTAA+AGG | - | tig0030651:33698-33717 | Msa1444060:intron | 20.0% |
| !! | TTACTAGCATAATACATTAT+TGG | - | tig0030651:33920-33939 | Msa1444060:intron | 20.0% |
| !! | ATTAAAATAATACTGGTAGT+GGG | - | tig0030651:33981-34000 | Msa1444060:intron | 20.0% |
| !!! | AGCACATATATTTTTTCAAA+GGG | - | tig0030651:34264-34283 | Msa1444060:CDS | 20.0% |
| !!! | ATATTTCTAAACTATCTTGT+TGG | + | tig0030651:34594-34613 | None:intergenic | 20.0% |
| !!! | GTTTTAGAAAAAAATTACCA+AGG | + | tig0030651:34871-34890 | None:intergenic | 20.0% |
| !! | CCTAAAATACTATGAAATAT+CGG | - | tig0030651:34965-34984 | Msa1444060:CDS | 20.0% |
| !! | CTAAAATACTATGAAATATC+GGG | - | tig0030651:34966-34985 | Msa1444060:CDS | 20.0% |
| !! | GTAAATGTAAATATTGTCTT+TGG | - | tig0030651:35018-35037 | Msa1444060:intron | 20.0% |
| !! | TAATATAAAATGGATATGCA+AGG | + | tig0030651:35046-35065 | None:intergenic | 20.0% |
| !! | TGATGAATATTAGATTTACT+TGG | - | tig0030651:35658-35677 | Msa1444060:intron | 20.0% |
| !!! | TCAAAAACTGTTTAAAACTA+GGG | + | tig0030651:35695-35714 | None:intergenic | 20.0% |
| !!! | TTCAAAAACTGTTTAAAACT+AGG | + | tig0030651:35696-35715 | None:intergenic | 20.0% |
| !!! | CTTTTCTTATGAAAATCATT+TGG | - | tig0030651:35745-35764 | Msa1444060:intron | 20.0% |
| !! | TTTGCAATTTAGGTTTCAAA+AGG | - | tig0030651:30551-30570 | Msa1444060:three_prime_UTR | 25.0% |
| !! | TTGCAATTTAGGTTTCAAAA+GGG | - | tig0030651:30552-30571 | Msa1444060:three_prime_UTR | 25.0% |
| !!! | GATTGTTTTAAGCTATTTTC+TGG | - | tig0030651:30663-30682 | Msa1444060:three_prime_UTR | 25.0% |
| !! | AATCAGTTCTTTTTCTGTTT+AGG | - | tig0030651:30747-30766 | Msa1444060:CDS | 25.0% |
| ! | ATACAAAGTAGAAAACACAT+TGG | + | tig0030651:31333-31352 | None:intergenic | 25.0% |
| ! | ATTTGCTCTTATTATCAGAA+AGG | - | tig0030651:31391-31410 | Msa1444060:intron | 25.0% |
| ! | TTTGCTCTTATTATCAGAAA+GGG | - | tig0030651:31392-31411 | Msa1444060:intron | 25.0% |
| ! | TGACAAAATATGATAGTTTG+CGG | + | tig0030651:32035-32054 | None:intergenic | 25.0% |
| !! | GGAAATTATTGATAACTACA+AGG | - | tig0030651:32095-32114 | Msa1444060:intron | 25.0% |
| ! | AATTATTAAGCGTGAATGTT+TGG | - | tig0030651:32167-32186 | Msa1444060:intron | 25.0% |
| ! | AATTTATATGGCTATATGGA+TGG | + | tig0030651:32449-32468 | None:intergenic | 25.0% |
| ! | GGATAATTTATATGGCTATA+TGG | + | tig0030651:32453-32472 | None:intergenic | 25.0% |
| ! | ATTGGCATTTATTGAAAGAA+AGG | + | tig0030651:32694-32713 | None:intergenic | 25.0% |
| ! | CAAATTTCAACATTCTGTAT+TGG | + | tig0030651:32712-32731 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGTCTCATGTAGT+AGG | - | tig0030651:32958-32977 | Msa1444060:intron | 25.0% |
| ! | GATCTATAGATCTAGTAAAA+TGG | + | tig0030651:33100-33119 | None:intergenic | 25.0% |
| ! | ATGCTGTGGAAATTAAATAT+GGG | + | tig0030651:33128-33147 | None:intergenic | 25.0% |
| !! | AGATTGAAGAAACTATTTCT+AGG | + | tig0030651:33205-33224 | None:intergenic | 25.0% |
| ! | AGAAATAGTTTCTTCAATCT+TGG | - | tig0030651:33205-33224 | Msa1444060:intron | 25.0% |
| ! | ACTAGTATTTAGTGGTTTAT+AGG | + | tig0030651:33354-33373 | None:intergenic | 25.0% |
| ! | ATTGATCAACTAGTATTTAG+TGG | + | tig0030651:33362-33381 | None:intergenic | 25.0% |
| ! | AAATACTAGTTGATCAATAG+AGG | - | tig0030651:33364-33383 | Msa1444060:intron | 25.0% |
| ! | AATACTAGTTGATCAATAGA+GGG | - | tig0030651:33365-33384 | Msa1444060:intron | 25.0% |
| ! | ATCACGAATATAAACCATAT+TGG | + | tig0030651:33427-33446 | None:intergenic | 25.0% |
| !! | TGATTTGGACATTGTAAATA+TGG | + | tig0030651:33584-33603 | None:intergenic | 25.0% |
| !!! | GATAATTTTGATGGTTTCTT+TGG | + | tig0030651:33777-33796 | None:intergenic | 25.0% |
| ! | ACCATCAAAATTATCTTCAA+AGG | - | tig0030651:33782-33801 | Msa1444060:intron | 25.0% |
| !!! | TCCTTTGAAGATAATTTTGA+TGG | + | tig0030651:33786-33805 | None:intergenic | 25.0% |
| ! | TATTATGCTAGTAACCTATA+GGG | + | tig0030651:33914-33933 | None:intergenic | 25.0% |
| ! | ATACATTATTGGAATAATGC+TGG | - | tig0030651:33931-33950 | Msa1444060:intron | 25.0% |
| ! | GATTAAAATAATACTGGTAG+TGG | - | tig0030651:33980-33999 | Msa1444060:intron | 25.0% |
| !!! | GAGCACATATATTTTTTCAA+AGG | - | tig0030651:34263-34282 | Msa1444060:CDS | 25.0% |
| !! | TGTTTATTACGTAGTGTTTT+TGG | - | tig0030651:34548-34567 | Msa1444060:CDS | 25.0% |
| !! | TACAAAGTTATGATTTTGTC+AGG | + | tig0030651:34754-34773 | None:intergenic | 25.0% |
| ! | TTAAAAGGGGAAAACAAATT+AGG | - | tig0030651:34909-34928 | Msa1444060:CDS | 25.0% |
| !! | CCGATATTTCATAGTATTTT+AGG | + | tig0030651:34968-34987 | None:intergenic | 25.0% |
| !! | AGAATTTTATTCCATCATGA+GGG | - | tig0030651:35247-35266 | Msa1444060:intron | 25.0% |
| !!! | AGAGTTTAATGTTTTTCGAA+TGG | - | tig0030651:35472-35491 | Msa1444060:intron | 25.0% |
| !! | TGATTTTCATAAGAAAAGAG+AGG | + | tig0030651:35743-35762 | None:intergenic | 25.0% |
| GAAAAACGATCGAAGAAAAA+AGG | + | tig0030651:30471-30490 | None:intergenic | 30.0% | |
| ! | TGCAATTTAGGTTTCAAAAG+GGG | - | tig0030651:30553-30572 | Msa1444060:three_prime_UTR | 30.0% |
| TCTGATGAGAAAAATCACAT+TGG | + | tig0030651:31099-31118 | None:intergenic | 30.0% | |
| ! | TGATTTTTCTCATCAGAGAA+AGG | - | tig0030651:31102-31121 | Msa1444060:CDS | 30.0% |
| TATCACTAATGTTGATGTGT+CGG | - | tig0030651:31267-31286 | Msa1444060:intron | 30.0% | |
| TGCTAAAGTAGCATCAAATT+GGG | - | tig0030651:31519-31538 | Msa1444060:intron | 30.0% | |
| TCCTACTGATAAAAAGGAAA+AGG | - | tig0030651:31756-31775 | Msa1444060:intron | 30.0% | |
| ! | TCCTTTTCCTTTTTATCAGT+AGG | + | tig0030651:31760-31779 | None:intergenic | 30.0% |
| AGGAAAAGGAAAATCATTTG+AGG | - | tig0030651:31770-31789 | Msa1444060:intron | 30.0% | |
| ! | TCATATTTTGTCATTCCAAG+TGG | - | tig0030651:32042-32061 | Msa1444060:intron | 30.0% |
| ! | TGGTATTTGGTTTACTACAA+AGG | - | tig0030651:32062-32081 | Msa1444060:intron | 30.0% |
| TACTACAAAGGAAGAAAAAC+AGG | - | tig0030651:32074-32093 | Msa1444060:intron | 30.0% | |
| !!! | GATTGTAAACATTTTGACTC+TGG | - | tig0030651:32238-32257 | Msa1444060:intron | 30.0% |
| !!! | AAACATTTTGACTCTGGAAA+TGG | - | tig0030651:32244-32263 | Msa1444060:intron | 30.0% |
| GAAATGGAAATTGTCCATTT+GGG | - | tig0030651:32260-32279 | Msa1444060:intron | 30.0% | |
| AAATGGAAATTGTCCATTTG+GGG | - | tig0030651:32261-32280 | Msa1444060:intron | 30.0% | |
| AGAACTAATCCAACAAAGAA+AGG | + | tig0030651:32420-32439 | None:intergenic | 30.0% | |
| AACAACATCTACAAGGATTT+GGG | + | tig0030651:32482-32501 | None:intergenic | 30.0% | |
| ATAAGTCAACAACATCTACA+AGG | + | tig0030651:32489-32508 | None:intergenic | 30.0% | |
| ! | TAGGTTTCTTTCCCTTTTAT+GGG | - | tig0030651:32593-32612 | Msa1444060:intron | 30.0% |
| AAATTAAAGCCCCCATAAAA+GGG | + | tig0030651:32607-32626 | None:intergenic | 30.0% | |
| TAAATTAAAGCCCCCATAAA+AGG | + | tig0030651:32608-32627 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTCTTACAGGGGAT+GGG | - | tig0030651:32846-32865 | Msa1444060:intron | 30.0% |
| TGCTGTGGAAATTAAATATG+GGG | + | tig0030651:33127-33146 | None:intergenic | 30.0% | |
| GATGCTGTGGAAATTAAATA+TGG | + | tig0030651:33129-33148 | None:intergenic | 30.0% | |
| TTCAAAAGCTCAAACAGATT+GGG | + | tig0030651:33180-33199 | None:intergenic | 30.0% | |
| ATTCAAAAGCTCAAACAGAT+TGG | + | tig0030651:33181-33200 | None:intergenic | 30.0% | |
| ATAGTTTCTTCAATCTTGGT+TGG | - | tig0030651:33209-33228 | Msa1444060:intron | 30.0% | |
| TAGTGGTTTATAGGAGTAAT+GGG | + | tig0030651:33345-33364 | None:intergenic | 30.0% | |
| TTAGTGGTTTATAGGAGTAA+TGG | + | tig0030651:33346-33365 | None:intergenic | 30.0% | |
| TAGAGGGAAAATGAGTTTAA+AGG | - | tig0030651:33381-33400 | Msa1444060:intron | 30.0% | |
| TTACTACACATTGGAATACA+TGG | + | tig0030651:33517-33536 | None:intergenic | 30.0% | |
| TATTCCAATGTGTAGTAACT+AGG | - | tig0030651:33519-33538 | Msa1444060:intron | 30.0% | |
| ! | CTTAATCCTAATCACTGATT+TGG | + | tig0030651:33599-33618 | None:intergenic | 30.0% |
| CAAATCAGTGATTAGGATTA+AGG | - | tig0030651:33597-33616 | Msa1444060:intron | 30.0% | |
| ATGATAGAATGTTGTGTAAG+TGG | + | tig0030651:33676-33695 | None:intergenic | 30.0% | |
| ! | TTGATGGTTTCTTTGGATTT+GGG | + | tig0030651:33770-33789 | None:intergenic | 30.0% |
| ! | TTTGATGGTTTCTTTGGATT+TGG | + | tig0030651:33771-33790 | None:intergenic | 30.0% |
| ! | AGTCAGCCATAAAATTTTGT+AGG | - | tig0030651:33852-33871 | Msa1444060:intron | 30.0% |
| !! | ACAAATTTTGGGTGACTATA+GGG | + | tig0030651:33883-33902 | None:intergenic | 30.0% |
| !! | TACAAATTTTGGGTGACTAT+AGG | + | tig0030651:33884-33903 | None:intergenic | 30.0% |
| TATAGTCACCCAAAATTTGT+AGG | - | tig0030651:33883-33902 | Msa1444060:intron | 30.0% | |
| GTATTATGCTAGTAACCTAT+AGG | + | tig0030651:33915-33934 | None:intergenic | 30.0% | |
| ATTACCGTTTAGTATTGTAG+TGG | - | tig0030651:34035-34054 | Msa1444060:intron | 30.0% | |
| CTAACCACTACAATACTAAA+CGG | + | tig0030651:34042-34061 | None:intergenic | 30.0% | |
| TTAGGTTATGGTAGTTTCTA+GGG | - | tig0030651:34058-34077 | Msa1444060:intron | 30.0% | |
| !!! | AAGGAGTTTTAAGAAGTTCA+AGG | + | tig0030651:34090-34109 | None:intergenic | 30.0% |
| !! | GCAATTTGTTAATCTGAATG+TGG | + | tig0030651:34201-34220 | None:intergenic | 30.0% |
| !!! | ATTTTTTCAAAGGGTGAGTA+TGG | - | tig0030651:34273-34292 | Msa1444060:CDS | 30.0% |
| TGGAAACAAGTACTATCATA+TGG | - | tig0030651:34293-34312 | Msa1444060:CDS | 30.0% | |
| AACAGAAAAAAGACCAAAGA+GGG | - | tig0030651:34363-34382 | Msa1444060:CDS | 30.0% | |
| CACTACGTAATAAACACAAT+AGG | + | tig0030651:34544-34563 | None:intergenic | 30.0% | |
| ! | AAAGTTATGATTTTGTCAGG+TGG | + | tig0030651:34751-34770 | None:intergenic | 30.0% |
| ! | ACTTTTGAACATAGACACTA+AGG | + | tig0030651:34935-34954 | None:intergenic | 30.0% |
| ! | GAGAATTTTATTCCATCATG+AGG | - | tig0030651:35246-35265 | Msa1444060:intron | 30.0% |
| CAATTCCATGAAAATCATCA+GGG | + | tig0030651:35541-35560 | None:intergenic | 30.0% | |
| TCAATTCCATGAAAATCATC+AGG | + | tig0030651:35542-35561 | None:intergenic | 30.0% | |
| ! | TTTTCATGGAATTGATCCTA+TGG | - | tig0030651:35547-35566 | Msa1444060:intron | 30.0% |
| ! | AATGATGATGCATTCTCATA+TGG | - | tig0030651:35586-35605 | Msa1444060:intron | 30.0% |
| TCTTATGAAAATCATTTGGC+AGG | - | tig0030651:35749-35768 | Msa1444060:intron | 30.0% | |
| !!! | AGATCATATGCCATTTTTGA+AGG | - | tig0030651:35808-35827 | Msa1444060:intron | 30.0% |
| TAAGCCAAAACTCCTTAAAA+TGG | + | tig0030651:35842-35861 | None:intergenic | 30.0% | |
| !!! | TTTTAAGGAGTTTTGGCTTA+AGG | - | tig0030651:35842-35861 | Msa1444060:intron | 30.0% |
| !!! | TTTAAGGAGTTTTGGCTTAA+GGG | - | tig0030651:35843-35862 | Msa1444060:intron | 30.0% |
| ! | ATCTTTCCATAGGGTATTAT+GGG | + | tig0030651:35917-35936 | None:intergenic | 30.0% |
| ! | AATCTTTCCATAGGGTATTA+TGG | + | tig0030651:35918-35937 | None:intergenic | 30.0% |
| ATAATACCCTATGGAAAGAT+TGG | - | tig0030651:35917-35936 | Msa1444060:intron | 30.0% | |
| GATGCTACTAAACTTTAACT+AGG | + | tig0030651:35954-35973 | None:intergenic | 30.0% | |
| !! | ACATGGTGAGATTTTAGGAA+CGG | + | tig0030651:30427-30446 | None:intergenic | 35.0% |
| CATTGGTCAGTAACAGTAAA+TGG | + | tig0030651:31161-31180 | None:intergenic | 35.0% | |
| !! | ATCGGTGCTACAAAATACAT+TGG | + | tig0030651:31178-31197 | None:intergenic | 35.0% |
| CAAAGTAGAAAACACATTGG+CGG | + | tig0030651:31330-31349 | None:intergenic | 35.0% | |
| GTGCTAAAGTAGCATCAAAT+TGG | - | tig0030651:31518-31537 | Msa1444060:intron | 35.0% | |
| TTTGAGGACTTGTGACAAAA+AGG | - | tig0030651:31786-31805 | Msa1444060:intron | 35.0% | |
| !! | CAAAAAGGAAAAGTACCTTC+TGG | - | tig0030651:31801-31820 | Msa1444060:intron | 35.0% |
| AACTTACATTCTGATGGCTT+GGG | + | tig0030651:31886-31905 | None:intergenic | 35.0% | |
| AAACTTACATTCTGATGGCT+TGG | + | tig0030651:31887-31906 | None:intergenic | 35.0% | |
| AAGCCATCAGAATGTAAGTT+TGG | - | tig0030651:31886-31905 | Msa1444060:intron | 35.0% | |
| AGCCATCAGAATGTAAGTTT+GGG | - | tig0030651:31887-31906 | Msa1444060:intron | 35.0% | |
| AACCCAAACTTACATTCTGA+TGG | + | tig0030651:31892-31911 | None:intergenic | 35.0% | |
| GTTTGTCATGTATTCGCAAT+TGG | - | tig0030651:31938-31957 | Msa1444060:intron | 35.0% | |
| TTGTCATTCCAAGTGGTATT+TGG | - | tig0030651:32049-32068 | Msa1444060:intron | 35.0% | |
| GTAGTAAACCAAATACCACT+TGG | + | tig0030651:32060-32079 | None:intergenic | 35.0% | |
| ATTCTTGCAAGCATACACAA+CGG | + | tig0030651:32150-32169 | None:intergenic | 35.0% | |
| GGAAATGGAAATTGTCCATT+TGG | - | tig0030651:32259-32278 | Msa1444060:intron | 35.0% | |
| ATGATAATCAAGCTTGACCA+AGG | + | tig0030651:32331-32350 | None:intergenic | 35.0% | |
| CAACAAAGAAAGGAAAAGCA+TGG | + | tig0030651:32410-32429 | None:intergenic | 35.0% | |
| ! | CATGCTTTTCCTTTCTTTGT+TGG | - | tig0030651:32408-32427 | Msa1444060:intron | 35.0% |
| GGGAGAACGGATAATTTATA+TGG | + | tig0030651:32461-32480 | None:intergenic | 35.0% | |
| ACAACATCTACAAGGATTTG+GGG | + | tig0030651:32481-32500 | None:intergenic | 35.0% | |
| CAACAACATCTACAAGGATT+TGG | + | tig0030651:32483-32502 | None:intergenic | 35.0% | |
| GATTATTTAATCCAGATGCG+TGG | + | tig0030651:32521-32540 | None:intergenic | 35.0% | |
| ! | GTAGGTTTCTTTCCCTTTTA+TGG | - | tig0030651:32592-32611 | Msa1444060:intron | 35.0% |
| ! | AGGTTTCTTTCCCTTTTATG+GGG | - | tig0030651:32594-32613 | Msa1444060:intron | 35.0% |
| ! | GGGGGCTTTAATTTAGAATA+TGG | - | tig0030651:32613-32632 | Msa1444060:intron | 35.0% |
| GTGAATATCTTTCACCTCAT+AGG | - | tig0030651:32734-32753 | Msa1444060:intron | 35.0% | |
| !!! | CATTTTTTTCTTACAGGGGA+TGG | - | tig0030651:32845-32864 | Msa1444060:intron | 35.0% |
| ! | GTGAATGATTGTTGTTCAGT+TGG | + | tig0030651:32883-32902 | None:intergenic | 35.0% |
| TGAAACTACTTGGAAGATCT+TGG | + | tig0030651:33062-33081 | None:intergenic | 35.0% | |
| GTAAAATGGTGAATGTGTCA+AGG | + | tig0030651:33086-33105 | None:intergenic | 35.0% | |
| AGATGAAATAAGAGATGCTG+TGG | + | tig0030651:33142-33161 | None:intergenic | 35.0% | |
| TTGCGTTAACACAACCAATA+TGG | - | tig0030651:33410-33429 | Msa1444060:intron | 35.0% | |
| GAAAGTAGGGAATGTAATTG+AGG | + | tig0030651:33488-33507 | None:intergenic | 35.0% | |
| TACATGGAGCATAGAAAGTA+GGG | + | tig0030651:33501-33520 | None:intergenic | 35.0% | |
| ATACATGGAGCATAGAAAGT+AGG | + | tig0030651:33502-33521 | None:intergenic | 35.0% | |
| TTCTCCTAGTTACTACACAT+TGG | + | tig0030651:33526-33545 | None:intergenic | 35.0% | |
| CAATGTCCAAATCAGTGATT+AGG | - | tig0030651:33590-33609 | Msa1444060:intron | 35.0% | |
| GAATGTTGTGTAAGTGGTAA+AGG | + | tig0030651:33670-33689 | None:intergenic | 35.0% | |
| ! | TTAAGCTTTTACCCACCATA+TGG | - | tig0030651:33806-33825 | Msa1444060:intron | 35.0% |
| ! | TAAGCTTTTACCCACCATAT+GGG | - | tig0030651:33807-33826 | Msa1444060:intron | 35.0% |
| !! | GTCTACTAGACTTGTTAATG+AGG | - | tig0030651:33829-33848 | Msa1444060:intron | 35.0% |
| ! | GCCATAAAATTTTGTAGGCA+TGG | - | tig0030651:33857-33876 | Msa1444060:intron | 35.0% |
| ! | GCCATGCCTACAAAATTTTA+TGG | + | tig0030651:33861-33880 | None:intergenic | 35.0% |
| TCACCCAAAATTTGTAGGTA+TGG | - | tig0030651:33888-33907 | Msa1444060:intron | 35.0% | |
| CGTTTAGTATTGTAGTGGTT+AGG | - | tig0030651:34040-34059 | Msa1444060:intron | 35.0% | |
| GTATTGTAGTGGTTAGGTTA+TGG | - | tig0030651:34046-34065 | Msa1444060:intron | 35.0% | |
| GTTAGGTTATGGTAGTTTCT+AGG | - | tig0030651:34057-34076 | Msa1444060:intron | 35.0% | |
| !!! | GACACTCTTGTTTTTCCATT+TGG | - | tig0030651:34152-34171 | Msa1444060:intron | 35.0% |
| GATGTATTCGTTTGACCAAA+TGG | + | tig0030651:34170-34189 | None:intergenic | 35.0% | |
| TGAAGTGAAGACAATAGGAA+GGG | + | tig0030651:34336-34355 | None:intergenic | 35.0% | |
| ATGAAGTGAAGACAATAGGA+AGG | + | tig0030651:34337-34356 | None:intergenic | 35.0% | |
| TGTCATGAAGTGAAGACAAT+AGG | + | tig0030651:34341-34360 | None:intergenic | 35.0% | |
| GAACAGAAAAAAGACCAAAG+AGG | - | tig0030651:34362-34381 | Msa1444060:CDS | 35.0% | |
| ACAGAAAAAAGACCAAAGAG+GGG | - | tig0030651:34364-34383 | Msa1444060:CDS | 35.0% | |
| ! | TTTTGTGATCCATGAGTTGT+TGG | - | tig0030651:34408-34427 | Msa1444060:CDS | 35.0% |
| TTGGCTGAAAATGATACTAG+AGG | - | tig0030651:34431-34450 | Msa1444060:CDS | 35.0% | |
| !!! | TACGTAGTGTTTTTGGTGAT+AGG | - | tig0030651:34555-34574 | Msa1444060:CDS | 35.0% |
| !!! | ACGTAGTGTTTTTGGTGATA+GGG | - | tig0030651:34556-34575 | Msa1444060:CDS | 35.0% |
| ACATGTCATGCATATCGAAA+TGG | + | tig0030651:35193-35212 | None:intergenic | 35.0% | |
| TTTCGATATGCATGACATGT+TGG | - | tig0030651:35193-35212 | Msa1444060:intron | 35.0% | |
| !!! | AGGGACTCAGATTTTTTTGA+GGG | - | tig0030651:35266-35285 | Msa1444060:CDS | 35.0% |
| !!! | CTCAGATTTTTTTGAGGGAA+TGG | - | tig0030651:35271-35290 | Msa1444060:CDS | 35.0% |
| ! | AATGGATCCATTTGAGATGA+TGG | - | tig0030651:35289-35308 | Msa1444060:CDS | 35.0% |
| GATAATGCCATCATCTCAAA+TGG | + | tig0030651:35299-35318 | None:intergenic | 35.0% | |
| !!! | GTTTCTGGGATAGATGATTT+TGG | - | tig0030651:35515-35534 | Msa1444060:intron | 35.0% |
| AGAAGAAGATGAAGATTACG+AGG | - | tig0030651:35616-35635 | Msa1444060:intron | 35.0% | |
| AGGTGACACAACTTAGTTAA+AGG | + | tig0030651:35723-35742 | None:intergenic | 35.0% | |
| !!! | AAGGTCATGTTGCCATTTTA+AGG | - | tig0030651:35827-35846 | Msa1444060:intron | 35.0% |
| !!! | GTTGCCATTTTAAGGAGTTT+TGG | - | tig0030651:35835-35854 | Msa1444060:intron | 35.0% |
| !!! | TTGGCTTAAGGGTTTTGTTT+TGG | - | tig0030651:35854-35873 | Msa1444060:intron | 35.0% |
| !!! | GGGTTTTGTTTTGGATTTTG+TGG | - | tig0030651:35863-35882 | Msa1444060:intron | 35.0% |
| AACCAACCAATCTTTCCATA+GGG | + | tig0030651:35926-35945 | None:intergenic | 35.0% | |
| AAACCAACCAATCTTTCCAT+AGG | + | tig0030651:35927-35946 | None:intergenic | 35.0% | |
| ! | GTTGGACATGGTGAGATTTT+AGG | + | tig0030651:30432-30451 | None:intergenic | 40.0% |
| AAAATCTCACCATGTCCAAC+AGG | - | tig0030651:30432-30451 | Msa1444060:three_prime_UTR | 40.0% | |
| TGAGATTTACCTGTTGGACA+TGG | + | tig0030651:30444-30463 | None:intergenic | 40.0% | |
| !! | GGTTGATGAGATTTACCTGT+TGG | + | tig0030651:30450-30469 | None:intergenic | 40.0% |
| AAGATGATGCTTGAGAAGCT+CGG | + | tig0030651:31456-31475 | None:intergenic | 40.0% | |
| AGCATCATCTTCAGCATCTA+TGG | - | tig0030651:31465-31484 | Msa1444060:intron | 40.0% | |
| GAAGGAACCTTTGTAACCTT+CGG | + | tig0030651:31547-31566 | None:intergenic | 40.0% | |
| ! | CCTTTTTATCAGTAGGATGC+AGG | + | tig0030651:31753-31772 | None:intergenic | 40.0% |
| CCTGCATCCTACTGATAAAA+AGG | - | tig0030651:31750-31769 | Msa1444060:intron | 40.0% | |
| ! | ATGATAGTTTGCGGCAAACA+GGG | + | tig0030651:32026-32045 | None:intergenic | 40.0% |
| ! | TATGATAGTTTGCGGCAAAC+AGG | + | tig0030651:32027-32046 | None:intergenic | 40.0% |
| ATAACTACAAGGCAAACTGC+AGG | - | tig0030651:32106-32125 | Msa1444060:intron | 40.0% | |
| ! | GGTTTCTTTCCCTTTTATGG+GGG | - | tig0030651:32595-32614 | Msa1444060:intron | 40.0% |
| CTCTACATCATCTTCCTATG+AGG | + | tig0030651:32751-32770 | None:intergenic | 40.0% | |
| CTCATAGGAAGATGATGTAG+AGG | - | tig0030651:32749-32768 | Msa1444060:intron | 40.0% | |
| ! | GTAGTAGGCAAGTGGTATTT+TGG | - | tig0030651:32973-32992 | Msa1444060:intron | 40.0% |
| !! | GCAAGTGGTATTTTGGACTT+TGG | - | tig0030651:32980-32999 | Msa1444060:intron | 40.0% |
| GTGTCAAGGATGAAACTACT+TGG | + | tig0030651:33072-33091 | None:intergenic | 40.0% | |
| ! | TGGTTTATAGGAGTAATGGG+CGG | + | tig0030651:33342-33361 | None:intergenic | 40.0% |
| CAATGCGTCATAACTCAAAG+AGG | + | tig0030651:33727-33746 | None:intergenic | 40.0% | |
| TGAGTTATGACGCATTGCAT+TGG | - | tig0030651:33730-33749 | Msa1444060:intron | 40.0% | |
| ACAAGTCTAGTAGACCCATA+TGG | + | tig0030651:33824-33843 | None:intergenic | 40.0% | |
| ! | GGGCCATACCTACAAATTTT+GGG | + | tig0030651:33894-33913 | None:intergenic | 40.0% |
| ! | AGGGCCATACCTACAAATTT+TGG | + | tig0030651:33895-33914 | None:intergenic | 40.0% |
| ATTTGTAGGTATGGCCCTAT+AGG | - | tig0030651:33897-33916 | Msa1444060:intron | 40.0% | |
| ACCAACTGAGCTACTTACTT+GGG | - | tig0030651:34126-34145 | Msa1444060:CDS | 40.0% | |
| ! | ACACTTGTAGCTTTACACGT+TGG | + | tig0030651:34230-34249 | None:intergenic | 40.0% |
| AATAGGAAGGGTCTGGATAT+AGG | + | tig0030651:34324-34343 | None:intergenic | 40.0% | |
| !! | TAACACTGATTTCCCCTCTT+TGG | + | tig0030651:34379-34398 | None:intergenic | 40.0% |
| ACTCATTCTCAGATCACTCA+TGG | + | tig0030651:34476-34495 | None:intergenic | 40.0% | |
| AAGCATCAACAACAGTGTAG+GGG | + | tig0030651:34644-34663 | None:intergenic | 40.0% | |
| CAAGCATCAACAACAGTGTA+GGG | + | tig0030651:34645-34664 | None:intergenic | 40.0% | |
| ACAAGCATCAACAACAGTGT+AGG | + | tig0030651:34646-34665 | None:intergenic | 40.0% | |
| ! | GTTATGATTTTGTCAGGTGG+AGG | + | tig0030651:34748-34767 | None:intergenic | 40.0% |
| !! | GTTTCGGGTGGACTAAATAA+TGG | + | tig0030651:34808-34827 | None:intergenic | 40.0% |
| TGTTTAACTGCCCTGTGTTT+CGG | + | tig0030651:34824-34843 | None:intergenic | 40.0% | |
| !! | AACACCTCATGGACTAGATA+AGG | - | tig0030651:34840-34859 | Msa1444060:CDS | 40.0% |
| !!! | AAATGGTTTTGTCTGCGTTG+AGG | + | tig0030651:35176-35195 | None:intergenic | 40.0% |
| AAAATCTGAGTCCCTCATGA+TGG | + | tig0030651:35261-35280 | None:intergenic | 40.0% | |
| !!! | GAGGGACTCAGATTTTTTTG+AGG | - | tig0030651:35265-35284 | Msa1444060:CDS | 40.0% |
| GAATCAAAAGGACCCAAACA+AGG | + | tig0030651:35347-35366 | None:intergenic | 40.0% | |
| TCAAATTGCTGCTATGCAAG+AGG | - | tig0030651:35397-35416 | Msa1444060:intron | 40.0% | |
| ATCATCTATCCCAGAAACCA+TGG | + | tig0030651:35513-35532 | None:intergenic | 40.0% | |
| ! | TTTGGCCCTGATGATTTTCA+TGG | - | tig0030651:35533-35552 | Msa1444060:intron | 40.0% |
| GATATCAAAGCTGCATCCAT+AGG | + | tig0030651:35566-35585 | None:intergenic | 40.0% | |
| GGCAACATGACCTTCAAAAA+TGG | + | tig0030651:35821-35840 | None:intergenic | 40.0% | |
| GTGAATCCCATAATACCCTA+TGG | - | tig0030651:35908-35927 | Msa1444060:intron | 40.0% | |
| TACCCTATGGAAAGATTGGT+TGG | - | tig0030651:35921-35940 | Msa1444060:intron | 40.0% | |
| !! | GTTTGCAAGTTTTATGCGCG+AGG | - | tig0030651:31055-31074 | Msa1444060:CDS | 45.0% |
| ! | GTGTCGGTGATTAGAGGTAT+CGG | + | tig0030651:31196-31215 | None:intergenic | 45.0% |
| GAGTCAATGTCGTGTTGTGT+CGG | + | tig0030651:31212-31231 | None:intergenic | 45.0% | |
| GTGAAACACTGACACCAGAT+AGG | + | tig0030651:31308-31327 | None:intergenic | 45.0% | |
| ! | CAGAAAGGGTCTTGTGCTTA+TGG | - | tig0030651:31406-31425 | Msa1444060:intron | 45.0% |
| ! | GGTCTTGTGCTTATGGTAGT+CGG | - | tig0030651:31413-31432 | Msa1444060:intron | 45.0% |
| AGCATCAAATTGGGTTCCGA+AGG | - | tig0030651:31528-31547 | Msa1444060:intron | 45.0% | |
| TTGGGTTCCGAAGGTTACAA+AGG | - | tig0030651:31537-31556 | Msa1444060:intron | 45.0% | |
| ! | AGTACTGGATTCACCGACAT+CGG | + | tig0030651:31620-31639 | None:intergenic | 45.0% |
| TGAATACGAGAACATCCACC+GGG | + | tig0030651:31697-31716 | None:intergenic | 45.0% | |
| GTGAATACGAGAACATCCAC+CGG | + | tig0030651:31698-31717 | None:intergenic | 45.0% | |
| GGTGGATGTTCTCGTATTCA+CGG | - | tig0030651:31697-31716 | Msa1444060:intron | 45.0% | |
| !!! | CGCTGTTTTTCAAAGCCAGA+AGG | + | tig0030651:31819-31838 | None:intergenic | 45.0% |
| ! | CAGAAAGCGTGATCACATTC+TGG | + | tig0030651:31919-31938 | None:intergenic | 45.0% |
| GATTTCCATTGCAGAGGTTG+GGG | + | tig0030651:31974-31993 | None:intergenic | 45.0% | |
| CGATTTCCATTGCAGAGGTT+GGG | + | tig0030651:31975-31994 | None:intergenic | 45.0% | |
| CCAACCTCTGCAATGGAAAT+CGG | - | tig0030651:31973-31992 | Msa1444060:intron | 45.0% | |
| !! | ACTACCGATTTCCATTGCAG+AGG | + | tig0030651:31980-31999 | None:intergenic | 45.0% |
| TAGAAACAGCTAGCCCCAAA+TGG | + | tig0030651:32277-32296 | None:intergenic | 45.0% | |
| CTACAAGGATTTGGGGAGAA+CGG | + | tig0030651:32474-32493 | None:intergenic | 45.0% | |
| GGACAAGTTGCTAAAGCTTG+TGG | + | tig0030651:32673-32692 | None:intergenic | 45.0% | |
| TGTCTCATGTAGTAGGCAAG+TGG | - | tig0030651:32965-32984 | Msa1444060:intron | 45.0% | |
| TTGGAAGATCTTGGAGACGA+TGG | + | tig0030651:33053-33072 | None:intergenic | 45.0% | |
| TGCAACATACACTAGCCAGT+AGG | + | tig0030651:33237-33256 | None:intergenic | 45.0% | |
| !! | TTATAGGAGTAATGGGCGGA+GGG | + | tig0030651:33338-33357 | None:intergenic | 45.0% |
| !! | TTTATAGGAGTAATGGGCGG+AGG | + | tig0030651:33339-33358 | None:intergenic | 45.0% |
| AGGACAATGCTAGCAACTAG+CGG | + | tig0030651:33650-33669 | None:intergenic | 45.0% | |
| GTCTAGTAGACCCATATGGT+GGG | + | tig0030651:33820-33839 | None:intergenic | 45.0% | |
| AGTCTAGTAGACCCATATGG+TGG | + | tig0030651:33821-33840 | None:intergenic | 45.0% | |
| TTGGAATAATGCTGGACTGC+TGG | - | tig0030651:33939-33958 | Msa1444060:intron | 45.0% | |
| !! | ATACTGGTAGTGGGTAAGAG+TGG | - | tig0030651:33990-34009 | Msa1444060:intron | 45.0% |
| ! | TAGTGGGTAAGAGTGGAAGT+AGG | - | tig0030651:33997-34016 | Msa1444060:intron | 45.0% |
| !! | TAGCTCAGTTGGTGAGCTAA+GGG | + | tig0030651:34119-34138 | None:intergenic | 45.0% |
| CACCAACTGAGCTACTTACT+TGG | - | tig0030651:34125-34144 | Msa1444060:CDS | 45.0% | |
| TCCCAAGTAAGTAGCTCAGT+TGG | + | tig0030651:34130-34149 | None:intergenic | 45.0% | |
| TGAAGACAATAGGAAGGGTC+TGG | + | tig0030651:34331-34350 | None:intergenic | 45.0% | |
| GTGATCCATGAGTTGTTGGT+TGG | - | tig0030651:34412-34431 | Msa1444060:CDS | 45.0% | |
| TTCAGCCAACCAACAACTCA+TGG | + | tig0030651:34420-34439 | None:intergenic | 45.0% | |
| GATACTAGAGGCTAGAGCTA+TGG | - | tig0030651:34443-34462 | Msa1444060:CDS | 45.0% | |
| !!! | AGTGTTTTTGGTGATAGGGC+AGG | - | tig0030651:34560-34579 | Msa1444060:CDS | 45.0% |
| ATCAACAACAGTGTAGGGGA+GGG | + | tig0030651:34640-34659 | None:intergenic | 45.0% | |
| !! | TGGAAGGTGTCTGGAAACAA+GGG | + | tig0030651:34716-34735 | None:intergenic | 45.0% |
| !! | ATGGAAGGTGTCTGGAAACA+AGG | + | tig0030651:34717-34736 | None:intergenic | 45.0% |
| ! | ATGATTTTGTCAGGTGGAGG+TGG | + | tig0030651:34745-34764 | None:intergenic | 45.0% |
| ATTTAGTCCACCCGAAACAC+AGG | - | tig0030651:34810-34829 | Msa1444060:CDS | 45.0% | |
| TTTAGTCCACCCGAAACACA+GGG | - | tig0030651:34811-34830 | Msa1444060:CDS | 45.0% | |
| GTTTAACTGCCCTGTGTTTC+GGG | + | tig0030651:34823-34842 | None:intergenic | 45.0% | |
| TGCTCCTTATCTAGTCCATG+AGG | + | tig0030651:34847-34866 | None:intergenic | 45.0% | |
| TTTCAGCATACAGTGAAGCC+TGG | - | tig0030651:35119-35138 | Msa1444060:intron | 45.0% | |
| CATGACATGTTGGATGTGCT+CGG | - | tig0030651:35203-35222 | Msa1444060:intron | 45.0% | |
| ! | GGTGAGGTTGATCTATCAAG+TGG | - | tig0030651:35224-35243 | Msa1444060:intron | 45.0% |
| GATGGCATTATCAGATTCGC+TGG | - | tig0030651:35307-35326 | Msa1444060:CDS | 45.0% | |
| !!! | TTATAAAATTTTATTAAAAG+GGG | - | tig0030651:34896-34915 | Msa1444060:CDS | 5.0% |
| ! | CGTGTTGTGTCGGTGATTAG+AGG | + | tig0030651:31202-31221 | None:intergenic | 50.0% |
| GTCGTTGTCAGTGTCCTATC+TGG | - | tig0030651:31291-31310 | Msa1444060:intron | 50.0% | |
| ACTTTAGCACTACGAGCCAC+AGG | + | tig0030651:31508-31527 | None:intergenic | 50.0% | |
| ACCTGACAAGCGTGGTGTAA+AGG | - | tig0030651:31567-31586 | Msa1444060:intron | 50.0% | |
| CCTGACAAGCGTGGTGTAAA+GGG | - | tig0030651:31568-31587 | Msa1444060:intron | 50.0% | |
| GGGTTTACAACGCAAGCATC+AGG | - | tig0030651:31588-31607 | Msa1444060:intron | 50.0% | |
| ! | CATCAGGACTGTACCGATGT+CGG | - | tig0030651:31604-31623 | Msa1444060:intron | 50.0% |
| GATGTCGGTGAATCCAGTAC+TGG | - | tig0030651:31619-31638 | Msa1444060:intron | 50.0% | |
| TGGTCTAGCACTACCAGTAC+TGG | + | tig0030651:31635-31654 | None:intergenic | 50.0% | |
| GAATACGAGAACATCCACCG+GGG | + | tig0030651:31696-31715 | None:intergenic | 50.0% | |
| ! | CTGATGGCTTGGGTTTCGAA+AGG | + | tig0030651:31876-31895 | None:intergenic | 50.0% |
| CCGATTTCCATTGCAGAGGT+TGG | + | tig0030651:31976-31995 | None:intergenic | 50.0% | |
| AGGGCAGGTTCTCACTGTAT+TGG | + | tig0030651:32007-32026 | None:intergenic | 50.0% | |
| !! | TGGGGCTAGCTGTTTCTACA+AGG | - | tig0030651:32279-32298 | Msa1444060:intron | 50.0% |
| ! | CAATCTTGGTTGGTGCCTAC+TGG | - | tig0030651:33219-33238 | Msa1444060:intron | 50.0% |
| !! | TATAGGAGTAATGGGCGGAG+GGG | + | tig0030651:33337-33356 | None:intergenic | 50.0% |
| CAACTAGCGGCTCTGTATCA+GGG | + | tig0030651:33637-33656 | None:intergenic | 50.0% | |
| ! | ATGACGCATTGCATTGGCGA+TGG | - | tig0030651:33736-33755 | Msa1444060:intron | 50.0% |
| TAATGCTGGACTGCTGGTAG+TGG | - | tig0030651:33945-33964 | Msa1444060:intron | 50.0% | |
| GGTGAGCTAAGGGACATCAA+AGG | + | tig0030651:34109-34128 | None:intergenic | 50.0% | |
| !! | GTAGCTCAGTTGGTGAGCTA+AGG | + | tig0030651:34120-34139 | None:intergenic | 50.0% |
| TGCTTGTTCAGCAGCTAGCT+AGG | - | tig0030651:34509-34528 | Msa1444060:CDS | 50.0% | |
| TCAACAACAGTGTAGGGGAG+GGG | + | tig0030651:34639-34658 | None:intergenic | 50.0% | |
| CATCAACAACAGTGTAGGGG+AGG | + | tig0030651:34641-34660 | None:intergenic | 50.0% | |
| GTTTCGGTAGGCTAGGACAA+TGG | + | tig0030651:34678-34697 | None:intergenic | 50.0% | |
| TTCAAGGGTTTCGGTAGGCT+AGG | + | tig0030651:34685-34704 | None:intergenic | 50.0% | |
| CTGTGTTCAAGGGTTTCGGT+AGG | + | tig0030651:34690-34709 | None:intergenic | 50.0% | |
| GTGGCTGTGTTCAAGGGTTT+CGG | + | tig0030651:34694-34713 | None:intergenic | 50.0% | |
| ACAAGGGTGGCTGTGTTCAA+GGG | + | tig0030651:34700-34719 | None:intergenic | 50.0% | |
| AACAAGGGTGGCTGTGTTCA+AGG | + | tig0030651:34701-34720 | None:intergenic | 50.0% | |
| ! | AAGGTGTCTGGAAACAAGGG+TGG | + | tig0030651:34713-34732 | None:intergenic | 50.0% |
| ! | ATTTTGTCAGGTGGAGGTGG+TGG | + | tig0030651:34742-34761 | None:intergenic | 50.0% |
| !! | CGGGTGGACTAAATAATGGC+AGG | + | tig0030651:34804-34823 | None:intergenic | 50.0% |
| CAGGGCAGTTAAACACCTCA+TGG | - | tig0030651:34829-34848 | Msa1444060:CDS | 50.0% | |
| !! | GACTAGATAAGGAGCACCCT+TGG | - | tig0030651:34851-34870 | Msa1444060:CDS | 50.0% |
| TGAAGCCTGGCTCATACACA+TGG | - | tig0030651:35132-35151 | Msa1444060:intron | 50.0% | |
| TGTCTCCATGTGTATGAGCC+AGG | + | tig0030651:35140-35159 | None:intergenic | 50.0% | |
| ! | TTTTGTCTGCGTTGAGGTGG+TGG | + | tig0030651:35170-35189 | None:intergenic | 50.0% |
| !!! | TGGTTTTGTCTGCGTTGAGG+TGG | + | tig0030651:35173-35192 | None:intergenic | 50.0% |
| GCATTATCAGATTCGCTGGC+TGG | - | tig0030651:35311-35330 | Msa1444060:CDS | 50.0% | |
| ! | TTATCAGATTCGCTGGCTGG+CGG | - | tig0030651:35314-35333 | Msa1444060:CDS | 50.0% |
| ! | GCTCTTGGGATGGATGCTTT+TGG | - | tig0030651:35425-35444 | Msa1444060:intron | 50.0% |
| CCTCATCGTCATCGTCATCA+GGG | + | tig0030651:35451-35470 | None:intergenic | 50.0% | |
| TCCTCATCGTCATCGTCATC+AGG | + | tig0030651:35452-35471 | None:intergenic | 50.0% | |
| TCGAATGGCTGCTATGCAAG+AGG | - | tig0030651:35487-35506 | Msa1444060:intron | 50.0% | |
| ATGCAAGAGGCCATGGTTTC+TGG | - | tig0030651:35500-35519 | Msa1444060:intron | 50.0% | |
| TGCAAGAGGCCATGGTTTCT+GGG | - | tig0030651:35501-35520 | Msa1444060:intron | 50.0% | |
| GCGCGAGGCGTATGTTTGAA+AGG | - | tig0030651:31070-31089 | Msa1444060:CDS | 55.0% | |
| TTCAGATTCTGCTGCGCCTG+TGG | - | tig0030651:31489-31508 | Msa1444060:intron | 55.0% | |
| GTTCCTTCACCTGACAAGCG+TGG | - | tig0030651:31559-31578 | Msa1444060:intron | 55.0% | |
| ACACCACGCTTGTCAGGTGA+AGG | + | tig0030651:31565-31584 | None:intergenic | 55.0% | |
| CCCTTTACACCACGCTTGTC+AGG | + | tig0030651:31571-31590 | None:intergenic | 55.0% | |
| TAGTGCCCCAACCTCTGCAA+TGG | - | tig0030651:31966-31985 | Msa1444060:intron | 55.0% | |
| ! | TAGTTTGCGGCAAACAGGGC+AGG | + | tig0030651:32022-32041 | None:intergenic | 55.0% |
| GCAACTAGCGGCTCTGTATC+AGG | + | tig0030651:33638-33657 | None:intergenic | 55.0% | |
| TCGGTAGGCTAGGACAATGG+TGG | + | tig0030651:34675-34694 | None:intergenic | 55.0% | |
| !! | TGGTGGTGATGGAAGGTGTC+TGG | + | tig0030651:34725-34744 | None:intergenic | 55.0% |
| TAACTGCCCTGTGTTTCGGG+TGG | + | tig0030651:34820-34839 | None:intergenic | 55.0% | |
| CATACACATGGAGACACCGC+AGG | - | tig0030651:35144-35163 | Msa1444060:intron | 55.0% | |
| ! | CATGTTGGATGTGCTCGGTG+AGG | - | tig0030651:35208-35227 | Msa1444060:intron | 55.0% |
| TGGCGGTTCAGGTCCTTGTT+TGG | - | tig0030651:35331-35350 | Msa1444060:intron | 55.0% | |
| ! | GGCGGTTCAGGTCCTTGTTT+GGG | - | tig0030651:35332-35351 | Msa1444060:intron | 55.0% |
| TGCTGCTATGCAAGAGGCCA+TGG | - | tig0030651:35403-35422 | Msa1444060:intron | 55.0% | |
| ATGCAAGAGGCCATGGCTCT+TGG | - | tig0030651:35410-35429 | Msa1444060:intron | 55.0% | |
| TGCAAGAGGCCATGGCTCTT+GGG | - | tig0030651:35411-35430 | Msa1444060:intron | 55.0% | |
| AGCATCCATCCCAAGAGCCA+TGG | + | tig0030651:35423-35442 | None:intergenic | 55.0% | |
| ! | CCCTGATGACGATGACGATG+AGG | - | tig0030651:35448-35467 | Msa1444060:intron | 55.0% |
| TTTGCTGCTGCCAACTGCCC+CGG | - | tig0030651:31676-31695 | Msa1444060:intron | 60.0% | |
| AGAACATCCACCGGGGCAGT+TGG | + | tig0030651:31689-31708 | None:intergenic | 60.0% | |
| ATGCGCGCTAACCACGCATC+TGG | - | tig0030651:32507-32526 | Msa1444060:intron | 60.0% | |
| !! | AGTAATGGGCGGAGGGGTGA+TGG | + | tig0030651:33331-33350 | None:intergenic | 60.0% |
| GGGGAGGGGCAAACAAGGTT+GGG | + | tig0030651:34625-34644 | None:intergenic | 60.0% | |
| AGGGGAGGGGCAAACAAGGT+TGG | + | tig0030651:34626-34645 | None:intergenic | 60.0% | |
| GTGTAGGGGAGGGGCAAACA+AGG | + | tig0030651:34630-34649 | None:intergenic | 60.0% | |
| !! | GTGGAGGTGGTGGTGATGGA+AGG | + | tig0030651:34732-34751 | None:intergenic | 60.0% |
| ! | TCAGGTGGAGGTGGTGGTGA+TGG | + | tig0030651:34736-34755 | None:intergenic | 60.0% |
| AGAGGCCATGGCTCTTGGGA+TGG | - | tig0030651:35415-35434 | Msa1444060:intron | 60.0% | |
| GGCTGCTATGCAAGAGGCCA+TGG | - | tig0030651:35493-35512 | Msa1444060:intron | 60.0% | |
| ! | TGCGTTGAGGTGGTGGCCTG+CGG | + | tig0030651:35163-35182 | None:intergenic | 65.0% |
| ! | GATTCGCTGGCTGGCGGTTC+AGG | - | tig0030651:35320-35339 | Msa1444060:intron | 65.0% |
| GCTGCTGCCAACTGCCCCGG+TGG | - | tig0030651:31679-31698 | Msa1444060:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030651 | gene | 30367 | 36022 | 30367 | ID=Msa1444060;Name=Msa1444060 |
| tig0030651 | mRNA | 30367 | 36022 | 30367 | ID=Msa1444060-mRNA-1;Parent=Msa1444060;Name=Msa1444060-mRNA-1;_AED=0.03;_eAED=0.03;_QI=76|1|1|1|0.75|0.8|5|352|482 |
| tig0030651 | exon | 30367 | 31264 | 30367 | ID=Msa1444060-mRNA-1:exon:14297;Parent=Msa1444060-mRNA-1 |
| tig0030651 | exon | 34089 | 34158 | 34089 | ID=Msa1444060-mRNA-1:exon:14296;Parent=Msa1444060-mRNA-1 |
| tig0030651 | exon | 34262 | 34998 | 34262 | ID=Msa1444060-mRNA-1:exon:14295;Parent=Msa1444060-mRNA-1 |
| tig0030651 | exon | 35251 | 35335 | 35251 | ID=Msa1444060-mRNA-1:exon:14294;Parent=Msa1444060-mRNA-1 |
| tig0030651 | exon | 35936 | 36022 | 35936 | ID=Msa1444060-mRNA-1:exon:14293;Parent=Msa1444060-mRNA-1 |
| tig0030651 | five_prime_UTR | 35947 | 36022 | 35947 | ID=Msa1444060-mRNA-1:five_prime_utr;Parent=Msa1444060-mRNA-1 |
| tig0030651 | CDS | 35936 | 35946 | 35936 | ID=Msa1444060-mRNA-1:cds;Parent=Msa1444060-mRNA-1 |
| tig0030651 | CDS | 35251 | 35335 | 35251 | ID=Msa1444060-mRNA-1:cds;Parent=Msa1444060-mRNA-1 |
| tig0030651 | CDS | 34262 | 34998 | 34262 | ID=Msa1444060-mRNA-1:cds;Parent=Msa1444060-mRNA-1 |
| tig0030651 | CDS | 34089 | 34158 | 34089 | ID=Msa1444060-mRNA-1:cds;Parent=Msa1444060-mRNA-1 |
| tig0030651 | CDS | 30719 | 31264 | 30719 | ID=Msa1444060-mRNA-1:cds;Parent=Msa1444060-mRNA-1 |
| tig0030651 | three_prime_UTR | 30367 | 30718 | 30367 | ID=Msa1444060-mRNA-1:three_prime_utr;Parent=Msa1444060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
