AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1289830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1289830 MtrunA17_Chr8g0364041 100.000 306 0 0 1 306 1 306 0.0 643
Msa1289830 MtrunA17_Chr5g0415261 97.386 306 8 0 1 306 1 306 0.0 626
Msa1289830 MtrunA17_Chr8g0378521 79.605 304 62 0 3 306 5 308 0.0 532
Msa1289830 MtrunA17_Chr7g0268381 78.738 301 64 0 6 306 13 313 0.0 523
Msa1289830 MtrunA17_Chr5g0445011 66.118 304 101 2 5 306 2 305 1.09e-153 432
Msa1289830 MtrunA17_Chr1g0165341 56.954 302 129 1 6 306 2 303 4.30e-129 369
Msa1289830 MtrunA17_Chr1g0190121 46.488 299 151 3 4 294 3 300 1.25e-97 290
Msa1289830 MtrunA17_Chr7g0272371 45.819 299 155 3 7 299 10 307 5.50e-96 286
Msa1289830 MtrunA17_Chr7g0274931 45.819 299 153 3 4 294 3 300 1.77e-95 285
Msa1289830 MtrunA17_Chr5g0436061 45.763 295 153 3 6 294 24 317 3.45e-95 284
Msa1289830 MtrunA17_Chr8g0387541 48.302 265 135 2 20 283 27 290 1.61e-93 280
Msa1289830 MtrunA17_Chr1g0186811 48.175 274 140 2 20 292 26 298 6.38e-93 278
Msa1289830 MtrunA17_Chr8g0334361 44.138 290 153 3 7 288 4 292 3.81e-92 275
Msa1289830 MtrunA17_Chr1g0167751 45.455 286 154 2 20 304 26 310 4.07e-92 276
Msa1289830 MtrunA17_Chr4g0025471 39.792 289 160 5 24 298 673 961 1.09e-60 208
Msa1289830 MtrunA17_Chr3g0097231 42.857 245 134 5 50 290 222 464 4.58e-60 199
Msa1289830 MtrunA17_Chr2g0322121 39.041 292 159 7 24 298 668 957 8.86e-59 202
Msa1289830 MtrunA17_Chr2g0330311 38.225 293 169 8 7 290 202 491 4.37e-57 191
Msa1289830 MtrunA17_Chr2g0330331 43.478 230 124 5 49 274 86 313 1.25e-53 178
Msa1289830 MtrunA17_Chr1g0196211 38.547 179 102 4 102 272 2 180 1.82e-35 128
Msa1289830 MtrunA17_Chr8g0369981 32.414 290 141 11 26 262 107 394 5.09e-31 120
Msa1289830 MtrunA17_Chr2g0330011 40.458 131 68 4 17 138 224 353 1.82e-17 81.6
Msa1289830 MtrunA17_Chr1g0196221 47.191 89 41 1 20 102 548 636 2.49e-16 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1289830 AT1G10430.2 93.791 306 19 0 1 306 1 306 0.0 612
Msa1289830 AT1G10430.1 93.791 306 19 0 1 306 1 306 0.0 612
Msa1289830 AT1G59830.1 93.791 306 19 0 1 306 1 306 0.0 608
Msa1289830 AT1G69960.1 91.803 305 25 0 2 306 3 307 0.0 598
Msa1289830 AT2G42500.1 78.571 308 64 1 1 306 6 313 0.0 528
Msa1289830 AT3G58500.1 78.247 308 65 1 1 306 6 313 0.0 528
Msa1289830 AT1G59830.2 92.490 253 19 0 1 253 1 253 2.98e-178 493
Msa1289830 AT5G55260.1 66.118 304 101 2 5 306 2 305 1.45e-155 437
Msa1289830 AT4G26720.1 65.461 304 103 2 5 306 2 305 4.02e-155 436
Msa1289830 AT2G42500.2 67.532 308 51 2 1 306 6 266 5.01e-154 432
Msa1289830 AT5G55260.2 58.261 345 101 3 5 306 2 346 4.57e-147 417
Msa1289830 AT3G19980.1 56.291 302 131 1 6 306 2 303 9.43e-128 366
Msa1289830 AT1G50370.1 55.960 302 132 1 6 306 2 303 2.01e-127 365
Msa1289830 AT2G39840.1 47.458 295 148 3 6 294 21 314 1.91e-97 290
Msa1289830 AT2G29400.1 46.886 273 144 1 20 292 43 314 1.95e-96 287
Msa1289830 AT5G27840.1 47.297 296 149 3 1 290 8 302 1.46e-95 285
Msa1289830 AT5G27840.2 47.297 296 149 3 1 290 8 302 1.81e-95 285
Msa1289830 AT5G27840.3 47.297 296 149 3 1 290 8 302 1.81e-95 285
Msa1289830 AT5G27840.4 47.297 296 149 3 1 290 8 302 2.36e-95 285
Msa1289830 AT1G64040.1 49.811 265 131 2 20 283 27 290 1.03e-94 283
Msa1289830 AT3G05580.1 46.622 296 151 3 1 290 8 302 4.80e-94 281
Msa1289830 AT5G43380.1 47.719 285 140 4 7 283 6 289 1.86e-92 278
Msa1289830 AT5G43380.2 47.719 285 140 4 7 283 6 289 1.97e-92 278
Msa1289830 AT4G11240.1 47.547 265 137 2 20 283 27 290 2.54e-92 277
Msa1289830 AT5G43380.3 47.719 285 140 4 7 283 6 289 3.05e-92 277
Msa1289830 AT5G59160.3 45.985 274 146 2 20 292 36 308 1.42e-91 275
Msa1289830 AT5G59160.2 45.985 274 146 2 20 292 36 308 1.42e-91 275
Msa1289830 AT5G59160.1 45.985 274 146 2 20 292 36 308 1.42e-91 275
Msa1289830 AT3G46820.1 45.255 274 148 2 20 292 36 308 1.13e-89 270
Msa1289830 AT2G42500.4 72.619 168 41 2 1 163 6 173 4.09e-84 251
Msa1289830 AT2G42500.3 75.000 160 35 2 1 155 6 165 5.56e-83 248
Msa1289830 AT2G42500.5 70.857 175 44 3 1 170 6 178 8.84e-83 248
Msa1289830 AT3G05580.2 48.780 246 119 3 1 240 8 252 1.00e-80 245
Msa1289830 AT2G42810.1 42.910 268 143 6 31 290 201 466 2.64e-64 210
Msa1289830 AT2G42810.5 42.910 268 143 6 31 290 201 466 2.64e-64 210
Msa1289830 AT2G42810.4 42.910 268 143 6 31 290 201 466 2.64e-64 210
Msa1289830 AT2G42810.3 42.910 268 143 6 31 290 254 519 7.23e-64 210
Msa1289830 AT2G42810.2 42.910 268 143 6 31 290 255 520 9.21e-64 210
Msa1289830 AT1G03445.2 42.182 275 142 7 20 279 476 748 9.86e-62 209
Msa1289830 AT1G03445.1 42.182 275 142 7 20 279 476 748 1.08e-61 209
Msa1289830 AT4G03080.1 41.241 274 147 5 20 279 550 823 5.28e-61 208
Msa1289830 AT2G27210.1 39.655 290 160 6 24 298 679 968 2.65e-59 204
Msa1289830 AT2G27210.2 39.655 290 160 6 24 298 674 963 2.67e-59 204
Msa1289830 AT1G08420.1 40.741 270 146 5 24 279 690 959 7.01e-59 203
Msa1289830 AT1G08420.2 40.741 270 146 5 24 279 685 954 7.83e-59 203
Msa1289830 AT5G63870.1 33.225 307 138 12 49 291 79 382 7.00e-32 123
Msa1289830 AT5G63870.2 33.225 307 138 12 49 291 79 382 7.00e-32 123
Msa1289830 AT5G63870.3 37.674 215 93 8 49 225 79 290 1.37e-28 112
Msa1289830 AT1G48120.1 31.562 320 151 10 32 283 635 954 8.64e-26 108
Msa1289830 AT5G10900.3 27.044 318 175 13 27 293 198 509 2.87e-18 85.5
Msa1289830 AT5G10900.2 28.926 242 137 9 27 239 198 433 4.26e-18 85.1
Msa1289830 AT5G10900.1 28.926 242 137 9 27 239 198 433 4.44e-18 85.1

Find 141 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACTAATTACCTCTTTA+TGG 0.084088 8_3:-44282051 Msa1289830:CDS
CAGATCAATGGATGCGATTT+TGG 0.130157 8_3:+44282315 None:intergenic
CAAAACATGATTCTTTCTTT+TGG 0.182757 8_3:-44278279 Msa1289830:three_prime_UTR
CTAAAATGTCTGCAGTAATT+TGG 0.192969 8_3:+44282487 Msa1289840:intron
CCACATCGGTAACAGTAATT+TGG 0.223140 8_3:+44278524 None:intergenic
GGGATGGTGCATTGATATTT+AGG 0.235306 8_3:-44277983 Msa1289830:three_prime_UTR
GGATCAGTTCTATTAGTTTC+TGG 0.240931 8_3:+44278222 None:intergenic
CGTGGAGACTGTTTCACTTC+TGG 0.243845 8_3:-44280506 Msa1289830:CDS
TAAAATGTCTGCAGTAATTT+GGG 0.248015 8_3:+44282488 Msa1289840:intron
CGATCAAGCTAGGGCGATTC+TGG 0.253664 8_3:-44282183 Msa1289830:CDS
ACTGGAAATTGGAGAAAATA+TGG 0.260651 8_3:-44278486 Msa1289830:CDS
CATACTAATTACCTCTTTAT+GGG 0.311686 8_3:-44282050 Msa1289830:CDS
CCATCAGGTGCTCGATTTGC+CGG 0.314120 8_3:+44282246 None:intergenic
GTGGAAAGTCAACGACAAAA+TGG 0.315571 8_3:+44277907 None:intergenic
ATGGCTGCCATACTGGAAAT+TGG 0.317792 8_3:-44278497 Msa1289830:CDS
TTCATTTAAATCATGGTAGA+TGG 0.327466 8_3:-44278017 Msa1289830:three_prime_UTR
CGTGGTGCTGGATACACATT+TGG 0.338634 8_3:-44278770 Msa1289830:CDS
GAGTAATTTGACGGCTTTCA+TGG 0.338735 8_3:+44280434 None:intergenic
GAGAATGAAACGCAGCGTTT+TGG 0.350731 8_3:+44282376 Msa1289840:CDS
CTGTTACCGATGTGGGAATA+TGG 0.351002 8_3:-44278516 Msa1289830:CDS
TGAACACCTGCACTTTCATT+TGG 0.364137 8_3:+44278036 None:intergenic
TACTGCCCTCATTGAGAGTC+AGG 0.370380 8_3:-44279406 Msa1289830:intron
CAGAAAGCAGTAACTACAAA+TGG 0.371044 8_3:+44278363 None:intergenic
CTATTAGTTTCTGGCAGATA+AGG 0.388446 8_3:+44278231 None:intergenic
TGGGAATATGGCTGCCATAC+TGG 0.390298 8_3:-44278504 Msa1289830:CDS
GGTAACGTGCTAAGTTCTTA+AGG 0.390467 8_3:-44277862 Msa1289830:three_prime_UTR
GTTTCGCCGGAGAAGCGTTA+TGG 0.391153 8_3:+44282337 Msa1289840:CDS
ATGACCAGTCTTCAATTAAA+CGG 0.392871 8_3:+44278302 None:intergenic
AGTGTCGGGCTCAATTTGCC+TGG 0.396233 8_3:+44278433 None:intergenic
TGACCAGTCTTCAATTAAAC+GGG 0.399235 8_3:+44278303 None:intergenic
ATGTTCAGTTCTAATTCCTT+TGG 0.400033 8_3:-44277883 Msa1289830:three_prime_UTR
TAGAGCTCACCAGCTTGTTA+TGG 0.402914 8_3:-44278696 Msa1289830:CDS
ACTCAATAAGATCATAAAAC+TGG 0.409693 8_3:+44282099 None:intergenic
CTTATTGAGTTGTTTCGAAT+TGG 0.416925 8_3:-44282086 Msa1289830:CDS
TGGAGGTCTCTCACCTTCAT+TGG 0.417060 8_3:-44279295 Msa1289830:CDS
TGGTAGATGGTTGGTTGAGT+AGG 0.424103 8_3:-44278004 Msa1289830:three_prime_UTR
CCTGATGATCGCTGTGGGTG+GGG 0.425400 8_3:-44278803 Msa1289830:CDS
CCCCACCCACAGCGATCATC+AGG 0.426163 8_3:+44278803 None:intergenic
GTGTCGGGCTCAATTTGCCT+GGG 0.431937 8_3:+44278434 None:intergenic
GATGAATGCTTGAGAAAATA+CGG 0.441753 8_3:-44279480 Msa1289830:CDS
CAGTTGCCCTTAGGTTGAAC+TGG 0.441812 8_3:-44277933 Msa1289830:three_prime_UTR
AATACGGAAATGCCAATGTC+TGG 0.443268 8_3:-44279464 Msa1289830:CDS
ACAAACACCAATTGGTGGCT+TGG 0.444196 8_3:+44278201 None:intergenic
CATACACTTGAGTAATTTGA+CGG 0.445144 8_3:+44280425 None:intergenic
GGAATATCCCCACGTGGTGC+TGG 0.445251 8_3:-44278782 Msa1289830:CDS
ATATCGCCGCAAACGGTGAC+AGG 0.447356 8_3:+44282128 None:intergenic
CTCTTTATGGGTGATTATGT+AGG 0.447757 8_3:-44282038 Msa1289830:intron
GCTGGTGAGCTCTAGATATG+AGG 0.452749 8_3:+44278705 None:intergenic
TAGGACAAATTTGGACAGTT+GGG 0.453203 8_3:-44282467 Msa1289830:five_prime_UTR
TTGTTATGGAAGGATACAAT+TGG 0.456190 8_3:-44278682 Msa1289830:CDS
GCAGGTGTTCATTTAAATCA+TGG 0.461952 8_3:-44278024 Msa1289830:three_prime_UTR
TCCTGATGATCGCTGTGGGT+GGG 0.465804 8_3:-44278804 Msa1289830:CDS
AAGTGCCCTGTCACCGTTTG+CGG 0.468159 8_3:-44282134 Msa1289830:CDS
ATTGAGTTGTTTCGAATTGG+TGG 0.468684 8_3:-44282083 Msa1289830:CDS
ATCTCTGTAACGGACTTTCA+AGG 0.469042 8_3:+44280480 None:intergenic
AACTGATCCAAGCCACCAAT+TGG 0.471853 8_3:-44278208 Msa1289830:three_prime_UTR
TCAGAGGCTTGCACTCCATC+AGG 0.472802 8_3:+44282231 None:intergenic
TTAGGACAAATTTGGACAGT+TGG 0.478296 8_3:-44282468 Msa1289830:five_prime_UTR
TTCACCTCCGCTTCCGTCAG+AGG 0.478531 8_3:+44282215 None:intergenic
TCTGTGAATCAGTTGCCCTT+AGG 0.484433 8_3:-44277942 Msa1289830:three_prime_UTR
ACCGTTTGCGGCGATATTCA+CGG 0.492974 8_3:-44282122 Msa1289830:CDS
GGTAGATGGTTGGTTGAGTA+GGG 0.493413 8_3:-44278003 Msa1289830:three_prime_UTR
AGGCTCTTTGCGATCAAGCT+AGG 0.494140 8_3:-44282193 Msa1289830:CDS
GATGGTTGGTTGAGTAGGGA+TGG 0.496834 8_3:-44277999 Msa1289830:three_prime_UTR
TGGAAAGTCAACGACAAAAT+GGG 0.500099 8_3:+44277908 None:intergenic
CTCTCAATGAGGGCAGTAAG+AGG 0.509482 8_3:+44279411 None:intergenic
TTTAAATCATGGTAGATGGT+TGG 0.510395 8_3:-44278013 Msa1289830:three_prime_UTR
GATAAGGCATGAGCAGCAGC+AGG 0.512411 8_3:+44278247 None:intergenic
TGACAGGGCACTTCACAGGC+TGG 0.514174 8_3:+44282144 None:intergenic
ATCCTGATGATCGCTGTGGG+TGG 0.515614 8_3:-44278805 Msa1289830:CDS
GGAAGCGGCAATAACATGAT+TGG 0.517449 8_3:-44278164 Msa1289830:three_prime_UTR
TTGAGTTGTTTCGAATTGGT+GGG 0.519730 8_3:-44282082 Msa1289830:CDS
CTACATAATCACCCATAAAG+AGG 0.526191 8_3:+44282039 None:intergenic
TCTGACGGAAGCGGAGGTGA+AGG 0.527508 8_3:-44282213 Msa1289830:CDS
CGTCTCAAGCGGATCTAGAC+CGG 0.531102 8_3:-44282265 Msa1289830:CDS
GGTAAAGAATTTCCAGACAT+TGG 0.531176 8_3:+44279452 None:intergenic
ACGGTGACAGGGCACTTCAC+AGG 0.531710 8_3:+44282140 None:intergenic
TGTTATGGAAGGATACAATT+GGG 0.532814 8_3:-44278681 Msa1289830:CDS
CAAATTACTGTTACCGATGT+GGG 0.533275 8_3:-44278523 Msa1289830:CDS
TTCCCCGTTTAATTGAAGAC+TGG 0.534774 8_3:-44278306 Msa1289830:three_prime_UTR
TTCACACCATAACGCTTCTC+CGG 0.534833 8_3:-44282343 Msa1289830:five_prime_UTR
ATGGGCACCAGTTCAACCTA+AGG 0.535683 8_3:+44277926 None:intergenic
GTGCAAGCCTCTGACGGAAG+CGG 0.537103 8_3:-44282222 Msa1289830:CDS
AGATATGAGGGAGAGGCCAT+TGG 0.538544 8_3:+44278718 None:intergenic
AGAAAGCAGTAACTACAAAT+GGG 0.538740 8_3:+44278364 None:intergenic
AATCGCATCCATTGATCTGA+AGG 0.539936 8_3:-44282311 Msa1289830:five_prime_UTR
GGCTCTTTGCGATCAAGCTA+GGG 0.543574 8_3:-44282192 Msa1289830:CDS
GTGGTGCTGGATACACATTT+GGG 0.547351 8_3:-44278769 Msa1289830:CDS
GGAATTAGAACTGAACATAG+TGG 0.548286 8_3:+44277888 None:intergenic
ATAAAGAGGTAATTAGTATG+AGG 0.550822 8_3:+44282053 None:intergenic
CTCACCTTCATTGGATACAC+TGG 0.551568 8_3:-44279286 Msa1289830:CDS
AGAAGCGTTATGGTGTGAAT+CGG 0.553079 8_3:+44282347 Msa1289840:CDS
ACTGGATAACATCAGAGCAT+TGG 0.553616 8_3:-44279268 Msa1289830:CDS
GATGGAGTGCAAGCCTCTGA+CGG 0.557849 8_3:-44282228 Msa1289830:CDS
TGCTGGATACACATTTGGGC+AGG 0.558690 8_3:-44278765 Msa1289830:CDS
GTTCTTAAGGTAGGATAGAG+TGG 0.561508 8_3:-44277849 Msa1289830:three_prime_UTR
AATATACAAACACCAATTGG+TGG 0.566004 8_3:+44278196 None:intergenic
TTATCCAGTGTATCCAATGA+AGG 0.566154 8_3:+44279282 None:intergenic
GGAGACTGTTTCACTTCTGG+TGG 0.567017 8_3:-44280503 Msa1289830:CDS
GGAAGGATACAATTGGGCTC+AGG 0.571725 8_3:-44278675 Msa1289830:intron
CTGGTGAGCTCTAGATATGA+GGG 0.574822 8_3:+44278706 None:intergenic
CCAAATTACTGTTACCGATG+TGG 0.577639 8_3:-44278524 Msa1289830:CDS
TGTATCCTTCCATAACAAGC+TGG 0.579948 8_3:+44278687 None:intergenic
TTGTAATTCTATCTCTGTAA+CGG 0.581751 8_3:+44280470 None:intergenic
TGTCGGGCTCAATTTGCCTG+GGG 0.582706 8_3:+44278435 None:intergenic
CCGGCAAATCGAGCACCTGA+TGG 0.583477 8_3:-44282246 Msa1289830:CDS
ACGTGCTAAGTTCTTAAGGT+AGG 0.585667 8_3:-44277858 Msa1289830:three_prime_UTR
AGAACTTAGCACGTTACCAA+AGG 0.588464 8_3:+44277867 None:intergenic
TGGATCGATGCCGTCTCAAG+CGG 0.594661 8_3:-44282276 Msa1289830:exon
CGGATCCTGATGATCGCTGT+GGG 0.595343 8_3:-44278808 Msa1289830:CDS
GAGCTCTAGATATGAGGGAG+AGG 0.596342 8_3:+44278711 None:intergenic
CAAGCCTCTGACGGAAGCGG+AGG 0.596393 8_3:-44282219 Msa1289830:CDS
GGGCGATTCTGGTTGAAGAG+TGG 0.600636 8_3:-44282172 Msa1289830:CDS
CGGTCTAGATCCGCTTGAGA+CGG 0.604182 8_3:+44282266 None:intergenic
AGCATTGGATCGTATACAAG+AGG 0.606512 8_3:-44279253 Msa1289830:intron
AAAATGTCTGCAGTAATTTG+GGG 0.609386 8_3:+44282489 Msa1289840:intron
TCTCAGTTCAATCATACCAA+TGG 0.609973 8_3:-44278734 Msa1289830:CDS
GCTCACCAGCTTGTTATGGA+AGG 0.615138 8_3:-44278692 Msa1289830:CDS
TCACACATTGGTCCTTCGTG+TGG 0.618298 8_3:+44278842 None:intergenic
TCGAACCTGACTCTCAATGA+GGG 0.619866 8_3:+44279401 None:intergenic
GACCAATGTGTGATCTCTTG+TGG 0.621435 8_3:-44278832 Msa1289830:CDS
TGGGCACCAGTTCAACCTAA+GGG 0.623354 8_3:+44277927 None:intergenic
CTCGAACCTGACTCTCAATG+AGG 0.628770 8_3:+44279400 None:intergenic
TGTGTATCCAGCACCACGTG+GGG 0.629248 8_3:+44278775 None:intergenic
TATCGCCGCAAACGGTGACA+GGG 0.634451 8_3:+44282129 None:intergenic
CAGAAGTGAAACAGTCTCCA+CGG 0.636967 8_3:+44280507 None:intergenic
GTCGGGCTCAATTTGCCTGG+GGG 0.640271 8_3:+44278436 None:intergenic
AATGTGTGATCTCTTGTGGT+CGG 0.643842 8_3:-44278828 Msa1289830:CDS
AGGTAAATAATCAAACAAGT+CGG 0.653175 8_3:+44279431 None:intergenic
TCGGATCCTGATGATCGCTG+TGG 0.656549 8_3:-44278809 Msa1289830:CDS
ATGTGTATCCAGCACCACGT+GGG 0.665979 8_3:+44278774 None:intergenic
ACATTATAGGTTCCACACGA+AGG 0.678528 8_3:-44278854 Msa1289830:intron
AATGTGTATCCAGCACCACG+TGG 0.679832 8_3:+44278773 None:intergenic
TGGCAGCCATATTCCCACAT+CGG 0.682984 8_3:+44278510 None:intergenic
GATAGAATTACAATTCTCAG+AGG 0.691020 8_3:-44280460 Msa1289830:CDS
TTATGGTGTGAATCGGAACG+AGG 0.693233 8_3:+44282354 Msa1289840:CDS
ATGGTGCCAAATGAAAGTGC+AGG 0.696127 8_3:-44278042 Msa1289830:three_prime_UTR
GACCAGTCTTCAATTAAACG+GGG 0.733429 8_3:+44278304 None:intergenic
AGATCGTGGATACTATTCCG+TGG 0.736373 8_3:-44280524 Msa1289830:CDS
GACCACAAGAGATCACACAT+TGG 0.740012 8_3:+44278830 None:intergenic
GGGTGGGGAATATCCCCACG+TGG 0.745078 8_3:-44278788 Msa1289830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAATATTTGCATATT+AGG + chr8_3:44279422-44279441 None:intergenic 10.0%
!!! TAATATGCAAATATTTTTTA+TGG - chr8_3:44279421-44279440 Msa1289830:CDS 10.0%
!! AGTTATTATAAAAAATAATC+TGG + chr8_3:44281950-44281969 None:intergenic 10.0%
!!! TTTTTGTGTGATTTTTTTTT+TGG - chr8_3:44278336-44278355 Msa1289830:three_prime_UTR 15.0%
!!! TGTTTTTCTTTAAAATTTGA+GGG - chr8_3:44279032-44279051 Msa1289830:intron 15.0%
!!! TTTATGTTGATAACTATTTT+AGG - chr8_3:44281769-44281788 Msa1289830:intron 15.0%
!! TCCAATTTGAATTTGATATT+TGG - chr8_3:44278389-44278408 Msa1289830:exon 20.0%
!! TCCAAATATCAAATTCAAAT+TGG + chr8_3:44278393-44278412 None:intergenic 20.0%
!!! AATTTGATATTTGGAACATT+TGG - chr8_3:44278398-44278417 Msa1289830:exon 20.0%
!!! TCATTTTCTTAAATTATCAC+AGG + chr8_3:44278548-44278567 None:intergenic 20.0%
!!! GTGTTTTTCTTTAAAATTTG+AGG - chr8_3:44279031-44279050 Msa1289830:intron 20.0%
!! ACTTAATCAATACATATACT+TGG - chr8_3:44279198-44279217 Msa1289830:intron 20.0%
!! CTTAATCAATACATATACTT+GGG - chr8_3:44279199-44279218 Msa1289830:intron 20.0%
!! TTAATCAATACATATACTTG+GGG - chr8_3:44279200-44279219 Msa1289830:intron 20.0%
!! TTTGAATATTTAACTGTTAC+TGG - chr8_3:44279259-44279278 Msa1289830:CDS 20.0%
!!! AGATTAATGTGTTATTAGTT+TGG - chr8_3:44279517-44279536 Msa1289830:intron 20.0%
!!! ATCATACTCTTTAAAAATGT+GGG + chr8_3:44279647-44279666 None:intergenic 20.0%
!!! TATCATACTCTTTAAAAATG+TGG + chr8_3:44279648-44279667 None:intergenic 20.0%
!! TTCATGAGAATGAAAAATAA+TGG + chr8_3:44280117-44280136 None:intergenic 20.0%
!!! ATTATTTTTCATTCTCATGA+AGG - chr8_3:44280116-44280135 Msa1289830:intron 20.0%
!! TAACCTGTTAAACAATATAT+AGG - chr8_3:44280364-44280383 Msa1289830:intron 20.0%
!! GTTTCAAATCTTTGATTAAT+TGG + chr8_3:44280706-44280725 None:intergenic 20.0%
!!! AATAAACATTTTGTTTCTAG+TGG + chr8_3:44280754-44280773 None:intergenic 20.0%
!!! AAAACATGATTCTTTCTTTT+GGG - chr8_3:44282067-44282086 Msa1289830:CDS 20.0%
!! AAAAATATACAAACACCAAT+TGG + chr8_3:44282155-44282174 None:intergenic 20.0%
!!! GTGTTTGTATATTTTTAGAA+GGG - chr8_3:44282159-44282178 Msa1289830:CDS 20.0%
!!! TGTTTGTATATTTTTAGAAG+GGG - chr8_3:44282160-44282179 Msa1289830:CDS 20.0%
! TAAAATGTCTGCAGTAATTT+GGG + chr8_3:44277860-44277879 None:intergenic 25.0%
! AAAAAAAACCTTCAGATCAA+TGG + chr8_3:44278045-44278064 None:intergenic 25.0%
!!! ATTGATCTGAAGGTTTTTTT+TGG - chr8_3:44278044-44278063 Msa1289830:three_prime_UTR 25.0%
! ACTCAATAAGATCATAAAAC+TGG + chr8_3:44278249-44278268 None:intergenic 25.0%
! ATAAAGAGGTAATTAGTATG+AGG + chr8_3:44278295-44278314 None:intergenic 25.0%
! TCATACTAATTACCTCTTTA+TGG - chr8_3:44278294-44278313 Msa1289830:three_prime_UTR 25.0%
! CATACTAATTACCTCTTTAT+GGG - chr8_3:44278295-44278314 Msa1289830:three_prime_UTR 25.0%
!!! TTTTTGGTATGAATTTTCTG+TGG - chr8_3:44278352-44278371 Msa1289830:three_prime_UTR 25.0%
!! TTTGGTATTGAAGTTGAATT+TGG - chr8_3:44278416-44278435 Msa1289830:CDS 25.0%
!!! TGAAGTTGAATTTGGAATTT+TGG - chr8_3:44278424-44278443 Msa1289830:CDS 25.0%
! TAAACTATAGAGATACCTTA+TGG - chr8_3:44278707-44278726 Msa1289830:CDS 25.0%
! ACATAAAAATCACAACCATA+AGG + chr8_3:44278725-44278744 None:intergenic 25.0%
! ATGAAATTGGATAGTTATGA+CGG - chr8_3:44278791-44278810 Msa1289830:CDS 25.0%
! GAATGTAAGTATATAGCAAT+AGG - chr8_3:44278824-44278843 Msa1289830:CDS 25.0%
! AAAAAAATCCAAATTTGCCA+AGG - chr8_3:44278901-44278920 Msa1289830:intron 25.0%
! AAACAGAATAATATGTTCCT+TGG + chr8_3:44278921-44278940 None:intergenic 25.0%
! GTTAAATATTCAAACCATAG+CGG + chr8_3:44279253-44279272 None:intergenic 25.0%
!! TCATACTCTTTAAAAATGTG+GGG + chr8_3:44279646-44279665 None:intergenic 25.0%
!!! ATTAATGAAGCATTGTCATA+AGG + chr8_3:44279795-44279814 None:intergenic 25.0%
! TTGTAATTCTATCTCTGTAA+CGG + chr8_3:44279878-44279897 None:intergenic 25.0%
! TTTGGGTAAGGAAAATAATT+GGG + chr8_3:44280003-44280022 None:intergenic 25.0%
!!! TTTTGGGTAAGGAAAATAAT+TGG + chr8_3:44280004-44280023 None:intergenic 25.0%
!! TGACAATTGAACTCTATTTT+GGG + chr8_3:44280020-44280039 None:intergenic 25.0%
!!! AGGATGTGATATTTAGTTTT+AGG - chr8_3:44280136-44280155 Msa1289830:intron 25.0%
!!! GGATGTGATATTTAGTTTTA+GGG - chr8_3:44280137-44280156 Msa1289830:intron 25.0%
! ATGCAGATAGAAATATTGTA+GGG - chr8_3:44280223-44280242 Msa1289830:intron 25.0%
! TTGCATGTTAATATCAACAA+AGG + chr8_3:44280272-44280291 None:intergenic 25.0%
! CTTCCTATATATTGTTTAAC+AGG + chr8_3:44280370-44280389 None:intergenic 25.0%
! AATCATATCATTCTTGGTAT+GGG - chr8_3:44280568-44280587 Msa1289830:intron 25.0%
! AGGTAAATAATCAAACAAGT+CGG + chr8_3:44280917-44280936 None:intergenic 25.0%
! TTCACAACTTAAACATAAGA+CGG + chr8_3:44281211-44281230 None:intergenic 25.0%
!!! ATTTTCTTAGGCTTTTAAGA+TGG - chr8_3:44281344-44281363 Msa1289830:intron 25.0%
! CAACTGTAATTGTACATTAT+AGG - chr8_3:44281478-44281497 Msa1289830:intron 25.0%
! TCATTAGATATAACAACAGA+AGG + chr8_3:44281748-44281767 None:intergenic 25.0%
! TTTCCTTAAAAACACATCTA+CGG + chr8_3:44282014-44282033 None:intergenic 25.0%
!! CAAAACATGATTCTTTCTTT+TGG - chr8_3:44282066-44282085 Msa1289830:CDS 25.0%
!! AAACATGATTCTTTCTTTTG+GGG - chr8_3:44282068-44282087 Msa1289830:CDS 25.0%
!!! GGTGTTTGTATATTTTTAGA+AGG - chr8_3:44282158-44282177 Msa1289830:CDS 25.0%
!!! TGTTCATTTGAAACTTTTGA+TGG - chr8_3:44282284-44282303 Msa1289830:exon 25.0%
! TTCATTTAAATCATGGTAGA+TGG - chr8_3:44282328-44282347 Msa1289830:five_prime_UTR 25.0%
AAAATGTCTGCAGTAATTTG+GGG + chr8_3:44277859-44277878 None:intergenic 30.0%
CTAAAATGTCTGCAGTAATT+TGG + chr8_3:44277861-44277880 None:intergenic 30.0%
! CAAATTACTGCAGACATTTT+AGG - chr8_3:44277859-44277878 Msa1289830:three_prime_UTR 30.0%
!!! CAGACATTTTAGGACAAATT+TGG - chr8_3:44277869-44277888 Msa1289830:three_prime_UTR 30.0%
!!! TCTGAAGGTTTTTTTTGGAT+TGG - chr8_3:44278049-44278068 Msa1289830:three_prime_UTR 30.0%
! CTTATTGAGTTGTTTCGAAT+TGG - chr8_3:44278259-44278278 Msa1289830:three_prime_UTR 30.0%
!! TTTATTTGTCCAAGTGTTGA+TGG - chr8_3:44278764-44278783 Msa1289830:CDS 30.0%
!! TTATTTGTCCAAGTGTTGAT+GGG - chr8_3:44278765-44278784 Msa1289830:CDS 30.0%
TGAAATTGGATAGTTATGAC+GGG - chr8_3:44278792-44278811 Msa1289830:CDS 30.0%
GTATATAGCAATAGGACTTT+AGG - chr8_3:44278832-44278851 Msa1289830:CDS 30.0%
AATATGTTCCTTGGCAAATT+TGG + chr8_3:44278912-44278931 None:intergenic 30.0%
! AAAGTCAAGTTTTGCACTTT+TGG + chr8_3:44279129-44279148 None:intergenic 30.0%
! TGCAAAACTTGACTTTTGTT+GGG - chr8_3:44279133-44279152 Msa1289830:intron 30.0%
! TTTTGTTGGGATGTTAGTAT+TGG - chr8_3:44279146-44279165 Msa1289830:intron 30.0%
TTTGTTGGGATGTTAGTATT+GGG - chr8_3:44279147-44279166 Msa1289830:intron 30.0%
GTATCTAATACCAATGTGTT+TGG - chr8_3:44279173-44279192 Msa1289830:intron 30.0%
GATTAAGTAACCAAACACAT+TGG + chr8_3:44279186-44279205 None:intergenic 30.0%
GAGACAAAATATGAGATTTG+TGG + chr8_3:44279336-44279355 None:intergenic 30.0%
GATAGAATTACAATTCTCAG+AGG - chr8_3:44279885-44279904 Msa1289830:intron 30.0%
CATACACTTGAGTAATTTGA+CGG + chr8_3:44279923-44279942 None:intergenic 30.0%
TTGGGTAAGGAAAATAATTG+GGG + chr8_3:44280002-44280021 None:intergenic 30.0%
!! ATTGAACTCTATTTTGGGTA+AGG + chr8_3:44280015-44280034 None:intergenic 30.0%
! CTGACAATTGAACTCTATTT+TGG + chr8_3:44280021-44280040 None:intergenic 30.0%
ATTACTAACCTATGGATAGA+CGG + chr8_3:44280048-44280067 None:intergenic 30.0%
TATCCATAGGTTAGTAATGA+AGG - chr8_3:44280050-44280069 Msa1289830:intron 30.0%
ATCCATAGGTTAGTAATGAA+GGG - chr8_3:44280051-44280070 Msa1289830:intron 30.0%
GATGCAGATAGAAATATTGT+AGG - chr8_3:44280222-44280241 Msa1289830:intron 30.0%
GTTGATATTAACATGCAACA+TGG - chr8_3:44280274-44280293 Msa1289830:intron 30.0%
!!! TCTCTTATTTTTCCTAACAC+AGG + chr8_3:44280430-44280449 None:intergenic 30.0%
CTTTGCAATCATATCATTCT+TGG - chr8_3:44280562-44280581 Msa1289830:intron 30.0%
CAATCATATCATTCTTGGTA+TGG - chr8_3:44280567-44280586 Msa1289830:intron 30.0%
ATCATATCATTCTTGGTATG+GGG - chr8_3:44280569-44280588 Msa1289830:intron 30.0%
GTTAATTCCTCTGTCAATAA+CGG - chr8_3:44280594-44280613 Msa1289830:intron 30.0%
TATTCTGATGCAGTTTCTAT+CGG - chr8_3:44280644-44280663 Msa1289830:intron 30.0%
GATGAATGCTTGAGAAAATA+CGG - chr8_3:44280865-44280884 Msa1289830:intron 30.0%
! TCTTTTGACAAATTGTATGC+CGG - chr8_3:44280988-44281007 Msa1289830:intron 30.0%
AGAAAACCTGAAATGTATCA+GGG + chr8_3:44281023-44281042 None:intergenic 30.0%
TAAACATAAGACGGATGTTT+AGG + chr8_3:44281202-44281221 None:intergenic 30.0%
! GATTTGAAGTTGCAATTTGT+TGG - chr8_3:44281237-44281256 Msa1289830:intron 30.0%
!! GCAATTTGTTGGTTTAATTG+AGG - chr8_3:44281248-44281267 Msa1289830:intron 30.0%
ACGATGTTAATTGAATTGCT+TGG - chr8_3:44281430-44281449 Msa1289830:intron 30.0%
TTGTTATGGAAGGATACAAT+TGG - chr8_3:44281663-44281682 Msa1289830:intron 30.0%
TGTTATGGAAGGATACAATT+GGG - chr8_3:44281664-44281683 Msa1289830:intron 30.0%
! ATTTTCTCCAATTTCCAGTA+TGG + chr8_3:44281858-44281877 None:intergenic 30.0%
ACTGGAAATTGGAGAAAATA+TGG - chr8_3:44281859-44281878 Msa1289830:intron 30.0%
AGAAAGCAGTAACTACAAAT+GGG + chr8_3:44281984-44282003 None:intergenic 30.0%
!! TTACCGTAGATGTGTTTTTA+AGG - chr8_3:44282008-44282027 Msa1289830:intron 30.0%
!! GTAGATGTGTTTTTAAGGAA+AGG - chr8_3:44282013-44282032 Msa1289830:intron 30.0%
ATGACCAGTCTTCAATTAAA+CGG + chr8_3:44282046-44282065 None:intergenic 30.0%
AATATACAAACACCAATTGG+TGG + chr8_3:44282152-44282171 None:intergenic 30.0%
!!! TATATTTTTAGAAGGGGAAG+CGG - chr8_3:44282166-44282185 Msa1289830:CDS 30.0%
TTTAAATCATGGTAGATGGT+TGG - chr8_3:44282332-44282351 Msa1289830:five_prime_UTR 30.0%
! ATGTTCAGTTCTAATTCCTT+TGG - chr8_3:44282462-44282481 Msa1289830:five_prime_UTR 30.0%
TTAGGACAAATTTGGACAGT+TGG - chr8_3:44277877-44277896 Msa1289830:three_prime_UTR 35.0%
TAGGACAAATTTGGACAGTT+GGG - chr8_3:44277878-44277897 Msa1289830:three_prime_UTR 35.0%
! ATTGAGTTGTTTCGAATTGG+TGG - chr8_3:44278262-44278281 Msa1289830:three_prime_UTR 35.0%
! TTGAGTTGTTTCGAATTGGT+GGG - chr8_3:44278263-44278282 Msa1289830:three_prime_UTR 35.0%
CTACATAATCACCCATAAAG+AGG + chr8_3:44278309-44278328 None:intergenic 35.0%
CTCTTTATGGGTGATTATGT+AGG - chr8_3:44278307-44278326 Msa1289830:three_prime_UTR 35.0%
ATGTAATCATGTGTGTTGTG+TGG - chr8_3:44278577-44278596 Msa1289830:intron 35.0%
! GTGCAAAACTTGACTTTTGT+TGG - chr8_3:44279132-44279151 Msa1289830:intron 35.0%
! TTTAGTTGTCTTTTCCGCTA+TGG - chr8_3:44279236-44279255 Msa1289830:intron 35.0%
TTTACAGAAGATGCTCAAAG+AGG - chr8_3:44279359-44279378 Msa1289830:intron 35.0%
!! GAAGCATTGTCATAAGGAAA+TGG + chr8_3:44279789-44279808 None:intergenic 35.0%
AACCCTTCATTACTAACCTA+TGG + chr8_3:44280056-44280075 None:intergenic 35.0%
AGGTTAGTAATGAAGGGTTT+AGG - chr8_3:44280057-44280076 Msa1289830:intron 35.0%
AGGGTTTAGGTGAAACAATT+CGG - chr8_3:44280070-44280089 Msa1289830:intron 35.0%
!! GTGAAACAATTCGGTTTTGT+GGG - chr8_3:44280079-44280098 Msa1289830:intron 35.0%
! ATATTTCTATCTGCATCCTC+AGG + chr8_3:44280219-44280238 None:intergenic 35.0%
TAGAAATATTGTAGGGTGAG+AGG - chr8_3:44280230-44280249 Msa1289830:intron 35.0%
!! ACTTGGTGTGCATGTTTAAA+AGG - chr8_3:44280300-44280319 Msa1289830:intron 35.0%
! CTTGGTGTGCATGTTTAAAA+GGG - chr8_3:44280301-44280320 Msa1289830:intron 35.0%
! ATAGGAAGCATGTAACTGAT+AGG - chr8_3:44280382-44280401 Msa1289830:intron 35.0%
! TGGTTAGTTAGAAGACTTTG+AGG - chr8_3:44280503-44280522 Msa1289830:CDS 35.0%
! TTAGTTAGAAGACTTTGAGG+TGG - chr8_3:44280506-44280525 Msa1289830:CDS 35.0%
!! AAGACTTTGAGGTGGTTATA+AGG - chr8_3:44280514-44280533 Msa1289830:CDS 35.0%
TCATATCATTCTTGGTATGG+GGG - chr8_3:44280570-44280589 Msa1289830:intron 35.0%
GGTAAAGAATTTCCAGACAT+TGG + chr8_3:44280896-44280915 None:intergenic 35.0%
! TCAGGTTCGAGTTATATATG+TGG - chr8_3:44280957-44280976 Msa1289830:intron 35.0%
CAGAAAACCTGAAATGTATC+AGG + chr8_3:44281024-44281043 None:intergenic 35.0%
TTATCCAGTGTATCCAATGA+AGG + chr8_3:44281066-44281085 None:intergenic 35.0%
TTTAATTGAGGACCTTCAGT+AGG - chr8_3:44281260-44281279 Msa1289830:intron 35.0%
GAGAAATATGTTCCTACTGA+AGG + chr8_3:44281275-44281294 None:intergenic 35.0%
TTACAGTTGTTAGCATACCT+GGG + chr8_3:44281467-44281486 None:intergenic 35.0%
ATTACAGTTGTTAGCATACC+TGG + chr8_3:44281468-44281487 None:intergenic 35.0%
TCTCAGTTCAATCATACCAA+TGG - chr8_3:44281611-44281630 Msa1289830:intron 35.0%
!! ACAGAAGGTATTACTCAAGA+TGG + chr8_3:44281733-44281752 None:intergenic 35.0%
!! ACTATTTTAGGAGAAGAACG+TGG - chr8_3:44281781-44281800 Msa1289830:intron 35.0%
CAAATTACTGTTACCGATGT+GGG - chr8_3:44281822-44281841 Msa1289830:intron 35.0%
CAGAAAGCAGTAACTACAAA+TGG + chr8_3:44281985-44282004 None:intergenic 35.0%
TGACCAGTCTTCAATTAAAC+GGG + chr8_3:44282045-44282064 None:intergenic 35.0%
!! CTATTAGTTTCTGGCAGATA+AGG + chr8_3:44282117-44282136 None:intergenic 35.0%
! GGATCAGTTCTATTAGTTTC+TGG + chr8_3:44282126-44282145 None:intergenic 35.0%
GCAGGTGTTCATTTAAATCA+TGG - chr8_3:44282321-44282340 Msa1289830:five_prime_UTR 35.0%
TGGAAAGTCAACGACAAAAT+GGG + chr8_3:44282440-44282459 Msa1289840:intron 35.0%
GGAATTAGAACTGAACATAG+TGG + chr8_3:44282460-44282479 Msa1289840:intron 35.0%
!!! GTTTTGGAAGGTGTTTCTGT+TGG + chr8_3:44277956-44277975 None:intergenic 40.0%
!! AGAAGCGTTATGGTGTGAAT+CGG + chr8_3:44278001-44278020 None:intergenic 40.0%
! CAGATCAATGGATGCGATTT+TGG + chr8_3:44278033-44278052 None:intergenic 40.0%
AATCGCATCCATTGATCTGA+AGG - chr8_3:44278034-44278053 Msa1289830:three_prime_UTR 40.0%
GTGTCAAGTGTCTATGTCAA+TGG + chr8_3:44278506-44278525 None:intergenic 40.0%
TACTAACATATGTCCGACAC+CGG - chr8_3:44278602-44278621 Msa1289830:intron 40.0%
! TGTTGATGGGTGCATGAAAT+TGG - chr8_3:44278778-44278797 Msa1289830:CDS 40.0%
GAAGAGCTGAAATTGAGAGA+AGG + chr8_3:44279698-44279717 None:intergenic 40.0%
TCATTAATTCACGCAGATCG+TGG - chr8_3:44279807-44279826 Msa1289830:intron 40.0%
!! ATCTCTGTAACGGACTTTCA+AGG + chr8_3:44279868-44279887 None:intergenic 40.0%
GAGTAATTTGACGGCTTTCA+TGG + chr8_3:44279914-44279933 None:intergenic 40.0%
! GGTGAAACAATTCGGTTTTG+TGG - chr8_3:44280078-44280097 Msa1289830:intron 40.0%
AACATGCAACATGGATCACT+TGG - chr8_3:44280283-44280302 Msa1289830:intron 40.0%
!! AGGTATCGGTCATTATCACT+CGG + chr8_3:44280474-44280493 None:intergenic 40.0%
AACCAACAGCTGTTAGGTAT+CGG + chr8_3:44280488-44280507 None:intergenic 40.0%
CTAACTAACCAACAGCTGTT+AGG + chr8_3:44280494-44280513 None:intergenic 40.0%
AATTCCTCTGTCAATAACGG+TGG - chr8_3:44280597-44280616 Msa1289830:intron 40.0%
AATACGGAAATGCCAATGTC+TGG - chr8_3:44280881-44280900 Msa1289830:intron 40.0%
GAAATGTATCAGGGAGTTAG+AGG + chr8_3:44281014-44281033 None:intergenic 40.0%
CTAACTCCCTGATACATTTC+AGG - chr8_3:44281014-44281033 Msa1289830:intron 40.0%
!!! TTTCAGGTTTTCTGCTTGCA+TGG - chr8_3:44281030-44281049 Msa1289830:intron 40.0%
ACTGGATAACATCAGAGCAT+TGG - chr8_3:44281077-44281096 Msa1289830:intron 40.0%
! AGCATTGGATCGTATACAAG+AGG - chr8_3:44281092-44281111 Msa1289830:intron 40.0%
! AGCCTTGCTGCAATTTTCTT+AGG - chr8_3:44281332-44281351 Msa1289830:intron 40.0%
AGCCTAAGAAAATTGCAGCA+AGG + chr8_3:44281337-44281356 None:intergenic 40.0%
! ATGGCTCATCTTTTAGTCCT+TGG - chr8_3:44281363-44281382 Msa1289830:intron 40.0%
TAACAAACAGCATTCCACCA+AGG + chr8_3:44281383-44281402 None:intergenic 40.0%
! ATTGAATTGCTTGGTGATCG+CGG - chr8_3:44281439-44281458 Msa1289830:intron 40.0%
ACATTATAGGTTCCACACGA+AGG - chr8_3:44281491-44281510 Msa1289830:intron 40.0%
AATGTGTGATCTCTTGTGGT+CGG - chr8_3:44281517-44281536 Msa1289830:intron 40.0%
TGTATCCTTCCATAACAAGC+TGG + chr8_3:44281661-44281680 None:intergenic 40.0%
CCACATCGGTAACAGTAATT+TGG + chr8_3:44281824-44281843 None:intergenic 40.0%
CCAAATTACTGTTACCGATG+TGG - chr8_3:44281821-44281840 Msa1289830:intron 40.0%
TTCCCCGTTTAATTGAAGAC+TGG - chr8_3:44282039-44282058 Msa1289830:CDS 40.0%
GACCAGTCTTCAATTAAACG+GGG + chr8_3:44282044-44282063 None:intergenic 40.0%
TGAACACCTGCACTTTCATT+TGG + chr8_3:44282312-44282331 None:intergenic 40.0%
! GGGATGGTGCATTGATATTT+AGG - chr8_3:44282362-44282381 Msa1289830:five_prime_UTR 40.0%
GTGGAAAGTCAACGACAAAA+TGG + chr8_3:44282441-44282460 Msa1289840:intron 40.0%
AGAACTTAGCACGTTACCAA+AGG + chr8_3:44282481-44282500 Msa1289840:intron 40.0%
GGTAACGTGCTAAGTTCTTA+AGG - chr8_3:44282483-44282502 Msa1289830:five_prime_UTR 40.0%
ACGTGCTAAGTTCTTAAGGT+AGG - chr8_3:44282487-44282506 Msa1289830:five_prime_UTR 40.0%
GTTCTTAAGGTAGGATAGAG+TGG - chr8_3:44282496-44282515 Msa1289830:five_prime_UTR 40.0%
!! ATGAAACGCAGCGTTTTGGA+AGG + chr8_3:44277968-44277987 None:intergenic 45.0%
! GAGAATGAAACGCAGCGTTT+TGG + chr8_3:44277972-44277991 None:intergenic 45.0%
TTATGGTGTGAATCGGAACG+AGG + chr8_3:44277994-44278013 None:intergenic 45.0%
TTCACACCATAACGCTTCTC+CGG - chr8_3:44278002-44278021 Msa1289830:three_prime_UTR 45.0%
GCATAAACACTTCTACCCGA+AGG + chr8_3:44278633-44278652 None:intergenic 45.0%
TTCATGCACCCATCAACACT+TGG + chr8_3:44278776-44278795 None:intergenic 45.0%
!!! TGCACTTTTGGTGCTTCAGA+AGG + chr8_3:44279117-44279136 None:intergenic 45.0%
TGTCATAAGGAAATGGCAGC+AGG + chr8_3:44279782-44279801 None:intergenic 45.0%
AGATCGTGGATACTATTCCG+TGG - chr8_3:44279821-44279840 Msa1289830:intron 45.0%
CAGAAGTGAAACAGTCTCCA+CGG + chr8_3:44279841-44279860 None:intergenic 45.0%
AAAATGCCAGCACATCGTGT+TGG + chr8_3:44279972-44279991 None:intergenic 45.0%
TCAGTGAACCGTCTATCCAT+AGG - chr8_3:44280037-44280056 Msa1289830:intron 45.0%
!! ACAATTCGGTTTTGTGGGAC+TGG - chr8_3:44280084-44280103 Msa1289830:intron 45.0%
ATCGGTCATTATCACTCGGA+AGG + chr8_3:44280470-44280489 None:intergenic 45.0%
! AAGGAGAGTGAGAGCATATC+AGG - chr8_3:44280533-44280552 Msa1289830:intron 45.0%
TGATGCAGTTTCTATCGGCA+AGG - chr8_3:44280649-44280668 Msa1289830:intron 45.0%
GGAGAAGGCTTTCGATGAAA+TGG + chr8_3:44280817-44280836 None:intergenic 45.0%
CTGAAAGCAGAAGATGGAGA+AGG + chr8_3:44280832-44280851 None:intergenic 45.0%
CTTCTCCATCTTCTGCTTTC+AGG - chr8_3:44280830-44280849 Msa1289830:intron 45.0%
CCATACCTGAAAGCAGAAGA+TGG + chr8_3:44280838-44280857 None:intergenic 45.0%
! CCATCTTCTGCTTTCAGGTA+TGG - chr8_3:44280835-44280854 Msa1289830:intron 45.0%
TCGAACCTGACTCTCAATGA+GGG + chr8_3:44280947-44280966 None:intergenic 45.0%
CTCACCTTCATTGGATACAC+TGG - chr8_3:44281059-44281078 Msa1289830:intron 45.0%
! GCTCATCTTTTAGTCCTTGG+TGG - chr8_3:44281366-44281385 Msa1289830:intron 45.0%
GACCAATGTGTGATCTCTTG+TGG - chr8_3:44281513-44281532 Msa1289830:intron 45.0%
GACCACAAGAGATCACACAT+TGG + chr8_3:44281518-44281537 None:intergenic 45.0%
! GTGGTGCTGGATACACATTT+GGG - chr8_3:44281576-44281595 Msa1289830:intron 45.0%
!! CTGGTGAGCTCTAGATATGA+GGG + chr8_3:44281642-44281661 None:intergenic 45.0%
!! TAGAGCTCACCAGCTTGTTA+TGG - chr8_3:44281649-44281668 Msa1289830:intron 45.0%
CTGTTACCGATGTGGGAATA+TGG - chr8_3:44281829-44281848 Msa1289830:intron 45.0%
ATGGCTGCCATACTGGAAAT+TGG - chr8_3:44281848-44281867 Msa1289830:intron 45.0%
! TGGAGTTTTGCGTGTAGTGT+CGG + chr8_3:44281930-44281949 None:intergenic 45.0%
AACTGATCCAAGCCACCAAT+TGG - chr8_3:44282137-44282156 Msa1289830:CDS 45.0%
! ACAAACACCAATTGGTGGCT+TGG + chr8_3:44282147-44282166 None:intergenic 45.0%
GGAAGCGGCAATAACATGAT+TGG - chr8_3:44282181-44282200 Msa1289830:CDS 45.0%
! ATGGTGCCAAATGAAAGTGC+AGG - chr8_3:44282303-44282322 Msa1289830:five_prime_UTR 45.0%
! TGGTAGATGGTTGGTTGAGT+AGG - chr8_3:44282341-44282360 Msa1289830:five_prime_UTR 45.0%
! GGTAGATGGTTGGTTGAGTA+GGG - chr8_3:44282342-44282361 Msa1289830:five_prime_UTR 45.0%
TCTGTGAATCAGTTGCCCTT+AGG - chr8_3:44282403-44282422 Msa1289830:five_prime_UTR 45.0%
!!! GGATGCGATTTTGGTTTCGC+CGG + chr8_3:44278024-44278043 None:intergenic 50.0%
AGGCTCTTTGCGATCAAGCT+AGG - chr8_3:44278152-44278171 Msa1289830:three_prime_UTR 50.0%
GGCTCTTTGCGATCAAGCTA+GGG - chr8_3:44278153-44278172 Msa1289830:three_prime_UTR 50.0%
ACCGTTTGCGGCGATATTCA+CGG - chr8_3:44278223-44278242 Msa1289830:three_prime_UTR 50.0%
CGTGGAGACTGTTTCACTTC+TGG - chr8_3:44279839-44279858 Msa1289830:intron 50.0%
GGAGACTGTTTCACTTCTGG+TGG - chr8_3:44279842-44279861 Msa1289830:intron 50.0%
TTCTCACCAACACGATGTGC+TGG - chr8_3:44279963-44279982 Msa1289830:intron 50.0%
GAGCTGTCTATGAGATCCTG+AGG - chr8_3:44280200-44280219 Msa1289830:intron 50.0%
TAACACAGGCCCGACTAATC+GGG + chr8_3:44280416-44280435 None:intergenic 50.0%
CTAACACAGGCCCGACTAAT+CGG + chr8_3:44280417-44280436 None:intergenic 50.0%
GACCGATACCTAACAGCTGT+TGG - chr8_3:44280483-44280502 Msa1289830:CDS 50.0%
GAGACCACCGTTATTGACAG+AGG + chr8_3:44280604-44280623 None:intergenic 50.0%
CTCTCAATGAGGGCAGTAAG+AGG + chr8_3:44280937-44280956 None:intergenic 50.0%
TACTGCCCTCATTGAGAGTC+AGG - chr8_3:44280939-44280958 Msa1289830:intron 50.0%
CTCGAACCTGACTCTCAATG+AGG + chr8_3:44280948-44280967 None:intergenic 50.0%
TGTATCAGGGAGTTAGAGGC+CGG + chr8_3:44281010-44281029 None:intergenic 50.0%
! CAGGTTTTCTGCTTGCATGG+AGG - chr8_3:44281033-44281052 Msa1289830:intron 50.0%
TGGAGGTCTCTCACCTTCAT+TGG - chr8_3:44281050-44281069 Msa1289830:intron 50.0%
TCACACATTGGTCCTTCGTG+TGG + chr8_3:44281506-44281525 None:intergenic 50.0%
ATGTGTATCCAGCACCACGT+GGG + chr8_3:44281574-44281593 None:intergenic 50.0%
AATGTGTATCCAGCACCACG+TGG + chr8_3:44281575-44281594 None:intergenic 50.0%
! CGTGGTGCTGGATACACATT+TGG - chr8_3:44281575-44281594 Msa1289830:intron 50.0%
TGCTGGATACACATTTGGGC+AGG - chr8_3:44281580-44281599 Msa1289830:intron 50.0%
AGATATGAGGGAGAGGCCAT+TGG + chr8_3:44281630-44281649 None:intergenic 50.0%
!! GAGCTCTAGATATGAGGGAG+AGG + chr8_3:44281637-44281656 None:intergenic 50.0%
!! GCTGGTGAGCTCTAGATATG+AGG + chr8_3:44281643-44281662 None:intergenic 50.0%
!! GCTCACCAGCTTGTTATGGA+AGG - chr8_3:44281653-44281672 Msa1289830:intron 50.0%
GGAAGGATACAATTGGGCTC+AGG - chr8_3:44281670-44281689 Msa1289830:intron 50.0%
TGGCAGCCATATTCCCACAT+CGG + chr8_3:44281838-44281857 None:intergenic 50.0%
TGGGAATATGGCTGCCATAC+TGG - chr8_3:44281841-44281860 Msa1289830:intron 50.0%
TTCAATTTGATCCAGCCCCC+AGG - chr8_3:44281894-44281913 Msa1289830:intron 50.0%
! GGAGTTTTGCGTGTAGTGTC+GGG + chr8_3:44281929-44281948 None:intergenic 50.0%
! GATGGTTGGTTGAGTAGGGA+TGG - chr8_3:44282346-44282365 Msa1289830:five_prime_UTR 50.0%
!! CAGTTGCCCTTAGGTTGAAC+TGG - chr8_3:44282412-44282431 Msa1289830:five_prime_UTR 50.0%
TGGGCACCAGTTCAACCTAA+GGG + chr8_3:44282421-44282440 Msa1289840:intron 50.0%
ATGGGCACCAGTTCAACCTA+AGG + chr8_3:44282422-44282441 Msa1289840:intron 50.0%
!! GTTTCGCCGGAGAAGCGTTA+TGG + chr8_3:44278011-44278030 None:intergenic 55.0%
TGGATCGATGCCGTCTCAAG+CGG - chr8_3:44278069-44278088 Msa1289830:three_prime_UTR 55.0%
CGGTCTAGATCCGCTTGAGA+CGG + chr8_3:44278082-44278101 None:intergenic 55.0%
CGTCTCAAGCGGATCTAGAC+CGG - chr8_3:44278080-44278099 Msa1289830:three_prime_UTR 55.0%
! CCATCAGGTGCTCGATTTGC+CGG + chr8_3:44278102-44278121 None:intergenic 55.0%
TCAGAGGCTTGCACTCCATC+AGG + chr8_3:44278117-44278136 None:intergenic 55.0%
GATGGAGTGCAAGCCTCTGA+CGG - chr8_3:44278117-44278136 Msa1289830:three_prime_UTR 55.0%
CGATCAAGCTAGGGCGATTC+TGG - chr8_3:44278162-44278181 Msa1289830:three_prime_UTR 55.0%
! GGGCGATTCTGGTTGAAGAG+TGG - chr8_3:44278173-44278192 Msa1289830:three_prime_UTR 55.0%
AAGTGCCCTGTCACCGTTTG+CGG - chr8_3:44278211-44278230 Msa1289830:three_prime_UTR 55.0%
TATCGCCGCAAACGGTGACA+GGG + chr8_3:44278219-44278238 None:intergenic 55.0%
ATATCGCCGCAAACGGTGAC+AGG + chr8_3:44278220-44278239 None:intergenic 55.0%
GCCGTGAATATCGCCGCAAA+CGG + chr8_3:44278227-44278246 None:intergenic 55.0%
ATGGCAGCAGGTATCAGCAG+AGG + chr8_3:44279770-44279789 None:intergenic 55.0%
AACACAGGCCCGACTAATCG+GGG + chr8_3:44280415-44280434 None:intergenic 55.0%
! CGATTAGTCGGGCCTGTGTT+AGG - chr8_3:44280415-44280434 Msa1289830:intron 55.0%
TCGGATCCTGATGATCGCTG+TGG - chr8_3:44281536-44281555 Msa1289830:intron 55.0%
CGGATCCTGATGATCGCTGT+GGG - chr8_3:44281537-44281556 Msa1289830:intron 55.0%
ATCCTGATGATCGCTGTGGG+TGG - chr8_3:44281540-44281559 Msa1289830:intron 55.0%
TCCTGATGATCGCTGTGGGT+GGG - chr8_3:44281541-44281560 Msa1289830:intron 55.0%
TGTGTATCCAGCACCACGTG+GGG + chr8_3:44281573-44281592 None:intergenic 55.0%
TGTCGGGCTCAATTTGCCTG+GGG + chr8_3:44281913-44281932 None:intergenic 55.0%
GTGTCGGGCTCAATTTGCCT+GGG + chr8_3:44281914-44281933 None:intergenic 55.0%
! AGTGTCGGGCTCAATTTGCC+TGG + chr8_3:44281915-44281934 None:intergenic 55.0%
GATAAGGCATGAGCAGCAGC+AGG + chr8_3:44282101-44282120 None:intergenic 55.0%
CCGGCAAATCGAGCACCTGA+TGG - chr8_3:44278099-44278118 Msa1289830:three_prime_UTR 60.0%
GTGCAAGCCTCTGACGGAAG+CGG - chr8_3:44278123-44278142 Msa1289830:three_prime_UTR 60.0%
TTCACCTCCGCTTCCGTCAG+AGG + chr8_3:44278133-44278152 None:intergenic 60.0%
TCTGACGGAAGCGGAGGTGA+AGG - chr8_3:44278132-44278151 Msa1289830:three_prime_UTR 60.0%
! TGACAGGGCACTTCACAGGC+TGG + chr8_3:44278204-44278223 None:intergenic 60.0%
! ACGGTGACAGGGCACTTCAC+AGG + chr8_3:44278208-44278227 None:intergenic 60.0%
! CTTCTACCCGAAGGCGTGTC+CGG + chr8_3:44278624-44278643 None:intergenic 60.0%
GGCAACAGCCCCCGATTAGT+CGG - chr8_3:44280403-44280422 Msa1289830:intron 60.0%
! GCAACAGCCCCCGATTAGTC+GGG - chr8_3:44280404-44280423 Msa1289830:intron 60.0%
ACACAGGCCCGACTAATCGG+GGG + chr8_3:44280414-44280433 None:intergenic 60.0%
CCTGATGATCGCTGTGGGTG+GGG - chr8_3:44281542-44281561 Msa1289830:intron 60.0%
GGAATATCCCCACGTGGTGC+TGG - chr8_3:44281563-44281582 Msa1289830:intron 60.0%
GTCGGGCTCAATTTGCCTGG+GGG + chr8_3:44281912-44281931 None:intergenic 60.0%
CAAGCCTCTGACGGAAGCGG+AGG - chr8_3:44278126-44278145 Msa1289830:three_prime_UTR 65.0%
TCCGACACCGGACACGCCTT+CGG - chr8_3:44278614-44278633 Msa1289830:intron 65.0%
CCCCACCCACAGCGATCATC+AGG + chr8_3:44281545-44281564 None:intergenic 65.0%
GGGTGGGGAATATCCCCACG+TGG - chr8_3:44281557-44281576 Msa1289830:intron 65.0%
GGCTCAATTTGCCTGGGGGC+TGG + chr8_3:44281908-44281927 None:intergenic 65.0%
! CCCGAAGGCGTGTCCGGTGT+CGG + chr8_3:44278618-44278637 None:intergenic 70.0%
CCGACACCGGACACGCCTTC+GGG - chr8_3:44278615-44278634 Msa1289830:intron 70.0%
! GCTTGGTGATCGCGGCACCC+AGG - chr8_3:44281447-44281466 Msa1289830:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 44277848 44282519 44277848 ID=Msa1289830;Name=Msa1289830
chr8_3 mRNA 44277848 44282519 44277848 ID=Msa1289830-mRNA-1;Parent=Msa1289830;Name=Msa1289830-mRNA-1;_AED=0.19;_eAED=0.19;_QI=228|1|1|1|1|1|6|555|306
chr8_3 exon 44277848 44278576 44277848 ID=Msa1289830-mRNA-1:exon:12123;Parent=Msa1289830-mRNA-1
chr8_3 exon 44278676 44278867 44278676 ID=Msa1289830-mRNA-1:exon:12122;Parent=Msa1289830-mRNA-1
chr8_3 exon 44279254 44279331 44279254 ID=Msa1289830-mRNA-1:exon:12121;Parent=Msa1289830-mRNA-1
chr8_3 exon 44279407 44279515 44279407 ID=Msa1289830-mRNA-1:exon:12120;Parent=Msa1289830-mRNA-1
chr8_3 exon 44280430 44280544 44280430 ID=Msa1289830-mRNA-1:exon:12119;Parent=Msa1289830-mRNA-1
chr8_3 exon 44282039 44282519 44282039 ID=Msa1289830-mRNA-1:exon:12118;Parent=Msa1289830-mRNA-1
chr8_3 five_prime_UTR 44282292 44282519 44282292 ID=Msa1289830-mRNA-1:five_prime_utr;Parent=Msa1289830-mRNA-1
chr8_3 CDS 44282039 44282291 44282039 ID=Msa1289830-mRNA-1:cds;Parent=Msa1289830-mRNA-1
chr8_3 CDS 44280430 44280544 44280430 ID=Msa1289830-mRNA-1:cds;Parent=Msa1289830-mRNA-1
chr8_3 CDS 44279407 44279515 44279407 ID=Msa1289830-mRNA-1:cds;Parent=Msa1289830-mRNA-1
chr8_3 CDS 44279254 44279331 44279254 ID=Msa1289830-mRNA-1:cds;Parent=Msa1289830-mRNA-1
chr8_3 CDS 44278676 44278867 44278676 ID=Msa1289830-mRNA-1:cds;Parent=Msa1289830-mRNA-1
chr8_3 CDS 44278403 44278576 44278403 ID=Msa1289830-mRNA-1:cds;Parent=Msa1289830-mRNA-1
chr8_3 three_prime_UTR 44277848 44278402 44277848 ID=Msa1289830-mRNA-1:three_prime_utr;Parent=Msa1289830-mRNA-1
Gene Sequence

>Msa1289830

ATGCCGTCTCAAGCGGATCTAGACCGGCAAATCGAGCACCTGATGGAGTGCAAGCCTCTGACGGAAGCGGAGGTGAAGGCTCTTTGCGATCAAGCTAGGGCGATTCTGGTTGAAGAGTGGAACGTCCAGCCTGTGAAGTGCCCTGTCACCGTTTGCGGCGATATTCACGGCCAGTTTTATGATCTTATTGAGTTGTTTCGAATTGGTGGGAATGCTCCTCATACTAATTACCTCTTTATGGGTGATTATGTAGATCGTGGATACTATTCCGTGGAGACTGTTTCACTTCTGGTGGCCTTGAAAGTCCGTTACAGAGATAGAATTACAATTCTCAGAGGAAACCATGAAAGCCGTCAAATTACTCAAGTGTATGGCTTCTACGATGAATGCTTGAGAAAATACGGAAATGCCAATGTCTGGAAATTCTTTACCGACTTGTTTGATTATTTACCTCTTACTGCCCTCATTGAGAGTCAGGTTTTCTGCTTGCATGGAGGTCTCTCACCTTCATTGGATACACTGGATAACATCAGAGCATTGGATCGTATACAAGAGGTTCCACACGAAGGACCAATGTGTGATCTCTTGTGGTCGGATCCTGATGATCGCTGTGGGTGGGGAATATCCCCACGTGGTGCTGGATACACATTTGGGCAGGATATAGCTTCTCAGTTCAATCATACCAATGGCCTCTCCCTCATATCTAGAGCTCACCAGCTTGTTATGGAAGGATACAATTGGGCTCAGGAGAAGAACGTGGTCACTGTATTTAGTGCTCCAAATTACTGTTACCGATGTGGGAATATGGCTGCCATACTGGAAATTGGAGAAAATATGGATCAGAATTTTCTTCAATTTGATCCAGCCCCCAGGCAAATTGAGCCCGACACTACACGCAAAACTCCAGATTATTTTTTATAA
Protein sequence

>Msa1289830

MPSQADLDRQIEHLMECKPLTEAEVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPHTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIASQFNHTNGLSLISRAHQLVMEGYNWAQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL*