Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878860 | XP_003618951.1 | 99.559 | 227 | 0 | 1 | 1 | 227 | 1 | 226 | 9.47e-167 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878860 | sp|Q9FK59|IF4E5_ARATH | 81.951 | 205 | 35 | 1 | 25 | 227 | 17 | 221 | 1.92e-125 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878860 | G7KPL2 | 99.559 | 227 | 0 | 1 | 1 | 227 | 1 | 226 | 4.52e-167 | 468 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024930 | Msa0878860 | 0.828535 | 8.518023e-55 | -8.615850e-47 |
| Msa0697680 | Msa0878860 | 0.830478 | 2.870732e-55 | -8.615850e-47 |
| Msa0120880 | Msa0878860 | 0.825334 | 4.959863e-54 | -8.615850e-47 |
| Msa0194920 | Msa0878860 | 0.829781 | 4.248859e-55 | -8.615850e-47 |
| Msa0217670 | Msa0878860 | 0.811017 | 8.638293e-51 | -8.615850e-47 |
| Msa0220990 | Msa0878860 | 0.815670 | 8.209890e-52 | -8.615850e-47 |
| Msa0236920 | Msa0878860 | 0.828260 | 9.921883e-55 | -8.615850e-47 |
| Msa0385500 | Msa0878860 | 0.804013 | 2.647794e-49 | -8.615850e-47 |
| Msa0257490 | Msa0878860 | 0.803836 | 2.882637e-49 | -8.615850e-47 |
| Msa0274720 | Msa0878860 | 0.805308 | 1.421229e-49 | -8.615850e-47 |
| Msa0296790 | Msa0878860 | 0.809670 | 1.687395e-50 | -8.615850e-47 |
| Msa0878860 | Msa0969380 | 0.807317 | 5.363156e-50 | -8.615850e-47 |
| Msa0878860 | Msa0969720 | 0.806220 | 9.144558e-50 | -8.615850e-47 |
| Msa0878860 | Msa1128270 | 0.804234 | 2.382465e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878860 | MtrunA17_Chr6g0461311 | 99.559 | 227 | 0 | 1 | 1 | 227 | 1 | 226 | 8.71e-171 | 468 |
| Msa0878860 | MtrunA17_Chr2g0285161 | 37.736 | 159 | 97 | 1 | 41 | 197 | 40 | 198 | 7.55e-37 | 129 |
| Msa0878860 | MtrunA17_Chr1g0168461 | 35.211 | 142 | 91 | 1 | 49 | 189 | 31 | 172 | 1.13e-29 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0878860 | AT5G18110.1 | 81.951 | 205 | 35 | 1 | 25 | 227 | 17 | 221 | 1.95e-126 | 357 |
| Msa0878860 | AT4G18040.1 | 38.255 | 149 | 92 | 0 | 49 | 197 | 60 | 208 | 2.30e-34 | 123 |
| Msa0878860 | AT1G29550.1 | 34.899 | 149 | 97 | 0 | 49 | 197 | 65 | 213 | 5.57e-28 | 106 |
| Msa0878860 | AT1G29590.1 | 33.557 | 149 | 99 | 0 | 49 | 197 | 65 | 213 | 1.82e-27 | 105 |
| Msa0878860 | AT5G35620.3 | 30.601 | 183 | 118 | 4 | 38 | 215 | 15 | 193 | 1.48e-24 | 96.7 |
| Msa0878860 | AT5G35620.1 | 30.601 | 183 | 118 | 4 | 38 | 215 | 15 | 193 | 1.48e-24 | 96.7 |
| Msa0878860 | AT5G35620.2 | 31.613 | 155 | 99 | 3 | 38 | 187 | 15 | 167 | 2.67e-23 | 92.4 |
Find 66 sgRNAs with CRISPR-Local
Find 349 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAATGTTATTGGGTGTTTA+AGG | 0.100635 | 6_1:-20326350 | Msa0878860:three_prime_UTR |
| AAGAAGGAATTCGTCCTTTA+TGG | 0.144383 | 6_1:-20328454 | Msa0878860:CDS |
| GTTCACAGGTTGAAGGATTT+TGG | 0.154611 | 6_1:-20328541 | Msa0878860:intron |
| TGGCCGCAACCTAATGTTAT+TGG | 0.223773 | 6_1:-20326360 | Msa0878860:three_prime_UTR |
| TTCGAGACAATTCATCTTAC+AGG | 0.254582 | 6_1:-20326479 | Msa0878860:CDS |
| CTAACTGCAATGGTGGAAAA+TGG | 0.299336 | 6_1:-20328279 | Msa0878860:CDS |
| GTGGGTGACCAATTGGATTA+TGG | 0.334671 | 6_1:-20326763 | Msa0878860:CDS |
| TATGATTGGTTTCGAATTCC+AGG | 0.339307 | 6_1:+20328684 | None:intergenic |
| ATGGATTATACGATTCAAAA+AGG | 0.339986 | 6_1:-20328260 | Msa0878860:CDS |
| AATCAGAGGAATCGACAATT+TGG | 0.345426 | 6_1:+20331223 | None:intergenic |
| TGCCTTGGTGGGTGACCAAT+TGG | 0.355029 | 6_1:-20326770 | Msa0878860:CDS |
| ACCAGAGCAAATTTGTGTTT+TGG | 0.356886 | 6_1:-20328722 | Msa0878860:intron |
| CTTAAACACCCAATAACATT+AGG | 0.362431 | 6_1:+20326351 | None:intergenic |
| AGCTGGTCTTCACCCTCTTA+AGG | 0.366017 | 6_1:-20331154 | Msa0878860:intron |
| TGATGTTATCCTCGTATGAT+TGG | 0.373956 | 6_1:+20328670 | None:intergenic |
| GGCCGCAACCTAATGTTATT+GGG | 0.376544 | 6_1:-20326359 | Msa0878860:three_prime_UTR |
| GCTTCCTCACGGCTATGTTA+TGG | 0.396161 | 6_1:-20326526 | Msa0878860:CDS |
| AGAAGGAATTCGTCCTTTAT+GGG | 0.402768 | 6_1:-20328453 | Msa0878860:CDS |
| AGATGCAAATCTGTTGGAAT+AGG | 0.415770 | 6_1:+20328482 | None:intergenic |
| TTGAAAAGATGCAAATCTGT+TGG | 0.417946 | 6_1:+20328476 | None:intergenic |
| AATGCAGGTGCTTGCCTTGG+TGG | 0.418746 | 6_1:-20326782 | Msa0878860:intron |
| CATAGCCGTGAGGAAGCTTT+AGG | 0.427935 | 6_1:+20326532 | None:intergenic |
| TTCACGAGATTGTCGTTCTT+CGG | 0.440058 | 6_1:+20331182 | None:intergenic |
| TCGCAATGCCTCTGATCATC+AGG | 0.442213 | 6_1:-20326677 | Msa0878860:intron |
| AATGCATTCATATTAAAATA+CGG | 0.445203 | 6_1:+20326135 | None:intergenic |
| TGTTATCACCATAATCCAAT+TGG | 0.452588 | 6_1:+20326755 | None:intergenic |
| ACGAGGACATAGTGAGTGTC+TGG | 0.454336 | 6_1:-20326702 | Msa0878860:CDS |
| TAAGTATCTACCTCCCATAA+AGG | 0.467917 | 6_1:+20328440 | None:intergenic |
| TGGTACACTCGTCGGGTACC+TGG | 0.476680 | 6_1:-20328702 | Msa0878860:CDS |
| TGTGTTTGAAGAACCTTAAG+AGG | 0.482480 | 6_1:+20331141 | None:intergenic |
| TGGACTAGAATGAAAGAGAG+AGG | 0.496051 | 6_1:+20331360 | None:intergenic |
| GATTATGGTGATAACATTTG+TGG | 0.503544 | 6_1:-20326748 | Msa0878860:CDS |
| GGTTGCGGCCAATGTTCAAA+AGG | 0.504093 | 6_1:+20326372 | None:intergenic |
| CCAAATGCAGGTGCTTGCCT+TGG | 0.504330 | 6_1:-20326785 | Msa0878860:intron |
| TACAAGAGCAATCTGTCATA+AGG | 0.513972 | 6_1:+20326158 | None:intergenic |
| TGTTGCGTTCACCTTGCTGA+AGG | 0.514884 | 6_1:-20326203 | Msa0878860:three_prime_UTR |
| GATAGTATACAATAGCATCA+AGG | 0.535667 | 6_1:+20326409 | None:intergenic |
| ATAGTATACAATAGCATCAA+GGG | 0.538105 | 6_1:+20326410 | None:intergenic |
| GACTCTGCTAACTGCAATGG+TGG | 0.541849 | 6_1:-20328286 | Msa0878860:CDS |
| TACAGGAACACTTGGTTGAG+AGG | 0.543267 | 6_1:-20326462 | Msa0878860:CDS |
| ATGCAGGTGCTTGCCTTGGT+GGG | 0.546695 | 6_1:-20326781 | Msa0878860:intron |
| CGTTCACCTTGCTGAAGGAA+AGG | 0.547577 | 6_1:-20326198 | Msa0878860:three_prime_UTR |
| ATTCATCTTACAGGAACACT+TGG | 0.548432 | 6_1:-20326470 | Msa0878860:CDS |
| TTTGACGTTGTAAGAATCAG+AGG | 0.556549 | 6_1:+20331209 | None:intergenic |
| GGACTAGAATGAAAGAGAGA+GGG | 0.557391 | 6_1:+20331361 | None:intergenic |
| TATGTTAATTTCGTTACTCG+AGG | 0.558299 | 6_1:-20326276 | Msa0878860:three_prime_UTR |
| ACAATAGCATCAAGGGGACT+AGG | 0.573856 | 6_1:+20326417 | None:intergenic |
| AATGCATTAATTCTTGAATG+TGG | 0.574206 | 6_1:-20326120 | Msa0878860:three_prime_UTR |
| CAATCTCGTGAACTCAAAGC+TGG | 0.583315 | 6_1:-20331171 | Msa0878860:CDS |
| GAAGATTGTTGAATTCAGTA+CGG | 0.584185 | 6_1:-20328646 | Msa0878860:intron |
| TATGATCCTTTCCTTCAGCA+AGG | 0.586235 | 6_1:+20326192 | None:intergenic |
| GTTGGAATAGGCAAGGAAGA+AGG | 0.587877 | 6_1:+20328494 | None:intergenic |
| CAAATCTGTTGGAATAGGCA+AGG | 0.608164 | 6_1:+20328487 | None:intergenic |
| GTGTTTGAAGAACCTTAAGA+GGG | 0.610079 | 6_1:+20331142 | None:intergenic |
| AGGAAGAAGGACGAGCAAGA+TGG | 0.610167 | 6_1:+20328507 | None:intergenic |
| AAGGACTCTGCTAACTGCAA+TGG | 0.616200 | 6_1:-20328289 | Msa0878860:CDS |
| ATCCAATTGGTCACCCACCA+AGG | 0.621634 | 6_1:+20326768 | None:intergenic |
| CACCCAATAACATTAGGTTG+CGG | 0.624291 | 6_1:+20326357 | None:intergenic |
| AGGAATTCGTCCTTTATGGG+AGG | 0.639812 | 6_1:-20328450 | Msa0878860:intron |
| GATGCCAACCTGATGATCAG+AGG | 0.659266 | 6_1:+20326669 | None:intergenic |
| TAGTATACAATAGCATCAAG+GGG | 0.683546 | 6_1:+20326411 | None:intergenic |
| CGTCACCTAAAGCTTCCTCA+CGG | 0.685945 | 6_1:-20326537 | Msa0878860:CDS |
| TCTCGAAGAGAAGCATCATG+CGG | 0.719756 | 6_1:+20326495 | None:intergenic |
| AATTCGAAACCAATCATACG+AGG | 0.732933 | 6_1:-20328679 | Msa0878860:CDS |
| TACTCCATAACATAGCCGTG+AGG | 0.757014 | 6_1:+20326522 | None:intergenic |
| ACTAAGCATTCGTTTCAACG+AGG | 0.762117 | 6_1:-20326719 | Msa0878860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAAAAAAATTA+GGG | + | chr6_1:20326353-20326372 | None:intergenic | 0.0% |
| !! | TTAATAATAATAAAAAAATT+AGG | + | chr6_1:20326354-20326373 | None:intergenic | 0.0% |
| !! | AAAAAAAAAATTTAAAAAAA+AGG | + | chr6_1:20328060-20328079 | None:intergenic | 0.0% |
| !!! | TTATTAATTTGTTTTTTGTT+AGG | - | chr6_1:20326367-20326386 | Msa0878860:three_prime_UTR | 10.0% |
| !!! | TCAATTATTATTTTTTATTG+AGG | - | chr6_1:20326423-20326442 | Msa0878860:three_prime_UTR | 10.0% |
| !!! | AAAATTATGACTTTATTTAT+AGG | - | chr6_1:20326610-20326629 | Msa0878860:intron | 10.0% |
| !!! | CAAAATATTTTATTCAAAAT+TGG | - | chr6_1:20329370-20329389 | Msa0878860:intron | 10.0% |
| !! | TTTATAATTTATGTTAGTTA+TGG | - | chr6_1:20330533-20330552 | Msa0878860:intron | 10.0% |
| !!! | AAAAATGTTGACTTTATATA+TGG | - | chr6_1:20326451-20326470 | Msa0878860:exon | 15.0% |
| !!! | AAAATGTTGACTTTATATAT+GGG | - | chr6_1:20326452-20326471 | Msa0878860:exon | 15.0% |
| !! | TTTATTTATAGGATTTAAGA+GGG | - | chr6_1:20326621-20326640 | Msa0878860:intron | 15.0% |
| !! | AATTGTGACTTTATTATATA+TGG | - | chr6_1:20326798-20326817 | Msa0878860:intron | 15.0% |
| !! | ATTGTGACTTTATTATATAT+GGG | - | chr6_1:20326799-20326818 | Msa0878860:intron | 15.0% |
| !! | TTTATTATATATGGGATTTA+AGG | - | chr6_1:20326807-20326826 | Msa0878860:intron | 15.0% |
| !! | TTATTATATATGGGATTTAA+GGG | - | chr6_1:20326808-20326827 | Msa0878860:intron | 15.0% |
| !! | ATCATTCATAAAATAATCTA+TGG | + | chr6_1:20328179-20328198 | None:intergenic | 15.0% |
| !!! | AAATCAAATTGAAGAATTTT+GGG | + | chr6_1:20328477-20328496 | None:intergenic | 15.0% |
| !!! | AAAATCAAATTGAAGAATTT+TGG | + | chr6_1:20328478-20328497 | None:intergenic | 15.0% |
| !!! | TTTTGAAGTTATTCTATTTT+TGG | - | chr6_1:20328495-20328514 | Msa0878860:CDS | 15.0% |
| !! | TTAAGATAAAAATGTAGTAT+AGG | - | chr6_1:20329818-20329837 | Msa0878860:intron | 15.0% |
| !!! | ATATTTTTATGACCTTTATT+TGG | - | chr6_1:20330461-20330480 | Msa0878860:intron | 15.0% |
| !! | AATGCATTCATATTAAAATA+CGG | + | chr6_1:20331335-20331354 | None:intergenic | 15.0% |
| !! | TTTATATATGGGATTTATGT+GGG | - | chr6_1:20326463-20326482 | Msa0878860:CDS | 20.0% |
| !!! | CTTTATTTATAGGATTTAAG+AGG | - | chr6_1:20326620-20326639 | Msa0878860:intron | 20.0% |
| !! | TTTGAACTTAAACATGTTAT+AGG | - | chr6_1:20326652-20326671 | Msa0878860:intron | 20.0% |
| !! | CAAATAGATTCTTAAAAGTT+GGG | - | chr6_1:20326720-20326739 | Msa0878860:CDS | 20.0% |
| !! | TATTATATATGGGATTTAAG+GGG | - | chr6_1:20326809-20326828 | Msa0878860:intron | 20.0% |
| !! | AGTGAAATTAAATTAGAACT+TGG | - | chr6_1:20326833-20326852 | Msa0878860:intron | 20.0% |
| !!! | TTCAACAAAAAAGAAGATTT+TGG | - | chr6_1:20327259-20327278 | Msa0878860:intron | 20.0% |
| !! | ATGTCAATGAGTTAATATTA+AGG | + | chr6_1:20327400-20327419 | None:intergenic | 20.0% |
| !! | TCTTAATGTTTGAATAGTAT+TGG | - | chr6_1:20328597-20328616 | Msa0878860:intron | 20.0% |
| !! | CTTAATGTTTGAATAGTATT+GGG | - | chr6_1:20328598-20328617 | Msa0878860:intron | 20.0% |
| !! | TGGAAATTAAGATATTGTTT+GGG | + | chr6_1:20329977-20329996 | None:intergenic | 20.0% |
| !! | ATGGAAATTAAGATATTGTT+TGG | + | chr6_1:20329978-20329997 | None:intergenic | 20.0% |
| !! | TTTGGAAGTTAACATAAAAA+AGG | - | chr6_1:20330411-20330430 | Msa0878860:intron | 20.0% |
| !!! | AAATGTAATTTTAATCCACA+GGG | + | chr6_1:20330616-20330635 | None:intergenic | 20.0% |
| !!! | TTTTATAATTTGTGTTGTCT+TGG | - | chr6_1:20331219-20331238 | Msa0878860:CDS | 20.0% |
| ! | CTTTATATATGGGATTTATG+TGG | - | chr6_1:20326462-20326481 | Msa0878860:CDS | 25.0% |
| ! | GCAAATAGATTCTTAAAAGT+TGG | - | chr6_1:20326719-20326738 | Msa0878860:CDS | 25.0% |
| !!! | TAGGAACATTTTTTATGTGT+GGG | - | chr6_1:20326746-20326765 | Msa0878860:CDS | 25.0% |
| ! | AACTACAAAATGGATCTAAA+TGG | + | chr6_1:20327036-20327055 | None:intergenic | 25.0% |
| ! | TGGTTAAAGTAACTACAAAA+TGG | + | chr6_1:20327046-20327065 | None:intergenic | 25.0% |
| ! | CAAAATTGTACATGGAAATT+AGG | - | chr6_1:20327088-20327107 | Msa0878860:intron | 25.0% |
| !! | TTTGATTTAATCTGATGTGT+TGG | - | chr6_1:20327167-20327186 | Msa0878860:intron | 25.0% |
| ! | TTGATTTAATCTGATGTGTT+GGG | - | chr6_1:20327168-20327187 | Msa0878860:intron | 25.0% |
| ! | CAATATAATAATCCAACCTA+TGG | + | chr6_1:20327315-20327334 | None:intergenic | 25.0% |
| ! | TAAAGAAATCAGCAGTTTAT+TGG | - | chr6_1:20327367-20327386 | Msa0878860:intron | 25.0% |
| !!! | AATGATCAAGTTGAAAGTTT+TGG | - | chr6_1:20327435-20327454 | Msa0878860:intron | 25.0% |
| !!! | ATGATCAAGTTGAAAGTTTT+GGG | - | chr6_1:20327436-20327455 | Msa0878860:intron | 25.0% |
| ! | TTAATTCAAACATGTTGAGT+TGG | - | chr6_1:20327815-20327834 | Msa0878860:intron | 25.0% |
| ! | TAATTCAAACATGTTGAGTT+GGG | - | chr6_1:20327816-20327835 | Msa0878860:intron | 25.0% |
| ! | TGGTGAAGAAATTAAGATTT+CGG | - | chr6_1:20327914-20327933 | Msa0878860:intron | 25.0% |
| ! | GAAAATAAAACAAAACTCCA+AGG | + | chr6_1:20328038-20328057 | None:intergenic | 25.0% |
| !! | TTGACCAAATTGAACTTTTT+GGG | - | chr6_1:20328283-20328302 | Msa0878860:CDS | 25.0% |
| ! | TACTAATTCGTATCATAGTT+TGG | + | chr6_1:20328329-20328348 | None:intergenic | 25.0% |
| ! | TGGTGAAGAAATTAAGATTT+AGG | - | chr6_1:20327914-20327933 | Msa0878860:intron | 25.0% |
| ! | GGTGAAGAAATTAAGATTTA+GGG | - | chr6_1:20328395-20328414 | Msa0878860:intron | 25.0% |
| !!! | TATTCTATTTTTGGACGAAT+TGG | - | chr6_1:20328504-20328523 | Msa0878860:CDS | 25.0% |
| !!! | AATGATATGTTTGCTGTATT+GGG | - | chr6_1:20328532-20328551 | Msa0878860:CDS | 25.0% |
| !!! | TTTTGGTTGATTTATTGTGT+TGG | - | chr6_1:20328711-20328730 | Msa0878860:CDS | 25.0% |
| !!! | TGACAATTTTTTTTGTTCAC+AGG | - | chr6_1:20328912-20328931 | Msa0878860:intron | 25.0% |
| ! | ATTTATGAGTTGTTCTGTTA+TGG | - | chr6_1:20329088-20329107 | Msa0878860:intron | 25.0% |
| ! | AAAGCAAATTAACCAACATT+TGG | + | chr6_1:20329136-20329155 | None:intergenic | 25.0% |
| !! | ATGGATTATACGATTCAAAA+AGG | - | chr6_1:20329207-20329226 | Msa0878860:intron | 25.0% |
| !! | TGGTTAGTGAAAATATTTTC+AGG | - | chr6_1:20329257-20329276 | Msa0878860:intron | 25.0% |
| !! | ACATTTTTCATAATCATTGC+AGG | + | chr6_1:20329309-20329328 | None:intergenic | 25.0% |
| ! | TGAATATTCTATCATTGACA+TGG | + | chr6_1:20329493-20329512 | None:intergenic | 25.0% |
| ! | CTAGAATATATAAACTGGAA+TGG | + | chr6_1:20329608-20329627 | None:intergenic | 25.0% |
| !!! | ACACTCTAGAATATATAAAC+TGG | + | chr6_1:20329613-20329632 | None:intergenic | 25.0% |
| ! | ATCATAAATGAAGTAATGCA+GGG | + | chr6_1:20329639-20329658 | None:intergenic | 25.0% |
| ! | GCCTGATTTATATATTCATA+TGG | - | chr6_1:20329659-20329678 | Msa0878860:intron | 25.0% |
| ! | GCCATATGAATATATAAATC+AGG | + | chr6_1:20329663-20329682 | None:intergenic | 25.0% |
| !! | TTTTCAGTAACTTCATATAG+AGG | + | chr6_1:20329767-20329786 | None:intergenic | 25.0% |
| ! | TCAACAATCAACACAAATAA+AGG | + | chr6_1:20329890-20329909 | None:intergenic | 25.0% |
| !!! | TTATTTGTGTTGATTGTTGA+AGG | - | chr6_1:20329890-20329909 | Msa0878860:intron | 25.0% |
| !! | TTTGGGAAAATGTTTTTCTA+TGG | + | chr6_1:20329960-20329979 | None:intergenic | 25.0% |
| !! | AATAGTCTAGTTTCTAAACT+GGG | + | chr6_1:20330221-20330240 | None:intergenic | 25.0% |
| ! | ATAAAAAAGGAAAACTGTCA+TGG | - | chr6_1:20330424-20330443 | Msa0878860:intron | 25.0% |
| ! | AACTTAAAAACAGAGCAAAA+AGG | + | chr6_1:20330515-20330534 | None:intergenic | 25.0% |
| !!! | GAAATGTAATTTTAATCCAC+AGG | + | chr6_1:20330617-20330636 | None:intergenic | 25.0% |
| !! | ACATTTCTGTTGTTTATTGT+TGG | - | chr6_1:20330630-20330649 | Msa0878860:intron | 25.0% |
| ! | AAAAACCAGAAATGTTATGA+AGG | + | chr6_1:20330873-20330892 | None:intergenic | 25.0% |
| ! | ATAGTATACAATAGCATCAA+GGG | + | chr6_1:20331060-20331079 | None:intergenic | 25.0% |
| ! | AATGCATTAATTCTTGAATG+TGG | - | chr6_1:20331347-20331366 | Msa0878860:five_prime_UTR | 25.0% |
| !!! | TTTTGGTTCGTTGAGTTTTT+TGG | + | chr6_1:20326130-20326149 | None:intergenic | 30.0% |
| AAAAACTCAACGAACCAAAA+AGG | - | chr6_1:20326130-20326149 | Msa0878860:three_prime_UTR | 30.0% | |
| AAAACTCAACGAACCAAAAA+GGG | - | chr6_1:20326131-20326150 | Msa0878860:three_prime_UTR | 30.0% | |
| ! | GGTTTTCAAACAAACAACAA+TGG | - | chr6_1:20326160-20326179 | Msa0878860:three_prime_UTR | 30.0% |
| ATTCTTAAAAGTTGGGAAGT+AGG | - | chr6_1:20326727-20326746 | Msa0878860:CDS | 30.0% | |
| !!! | GTAGGAACATTTTTTATGTG+TGG | - | chr6_1:20326745-20326764 | Msa0878860:CDS | 30.0% |
| !!! | AGGAACATTTTTTATGTGTG+GGG | - | chr6_1:20326747-20326766 | Msa0878860:CDS | 30.0% |
| TGCTATGAAACTTAATGTGT+TGG | - | chr6_1:20326920-20326939 | Msa0878860:intron | 30.0% | |
| GCTATGAAACTTAATGTGTT+GGG | - | chr6_1:20326921-20326940 | Msa0878860:intron | 30.0% | |
| CTATGAAACTTAATGTGTTG+GGG | - | chr6_1:20326922-20326941 | Msa0878860:intron | 30.0% | |
| AACCATAGATCAGATTTAAC+AGG | - | chr6_1:20327061-20327080 | Msa0878860:intron | 30.0% | |
| ACCATAGATCAGATTTAACA+GGG | - | chr6_1:20327062-20327081 | Msa0878860:intron | 30.0% | |
| TGATTTAATCTGATGTGTTG+GGG | - | chr6_1:20327169-20327188 | Msa0878860:intron | 30.0% | |
| TGGTGAAAGAAACTACAAAA+TGG | + | chr6_1:20327295-20327314 | None:intergenic | 30.0% | |
| TTTGTAGTTTCTTTCACCAT+AGG | - | chr6_1:20327296-20327315 | Msa0878860:intron | 30.0% | |
| ATTAACTCATTGACATGTTG+AGG | - | chr6_1:20327404-20327423 | Msa0878860:intron | 30.0% | |
| CTTTGTGTGAAAAGAAAGTT+CGG | - | chr6_1:20327603-20327622 | Msa0878860:intron | 30.0% | |
| GATTATGTAACTACATGAGT+CGG | + | chr6_1:20327732-20327751 | None:intergenic | 30.0% | |
| ! | AATGACCACATTGTATGTTT+TGG | - | chr6_1:20327843-20327862 | Msa0878860:intron | 30.0% |
| ! | ATGACCACATTGTATGTTTT+GGG | - | chr6_1:20327844-20327863 | Msa0878860:intron | 30.0% |
| ! | AACTTATTGCTCTTTGAAGA+TGG | - | chr6_1:20327894-20327913 | Msa0878860:intron | 30.0% |
| GGTGAAGAAATTAAGATTTC+GGG | - | chr6_1:20327915-20327934 | Msa0878860:intron | 30.0% | |
| AAGGTAACAATCAACTTCAA+AGG | + | chr6_1:20328019-20328038 | None:intergenic | 30.0% | |
| ! | TTTGAAGTTGATTGTTACCT+TGG | - | chr6_1:20328018-20328037 | Msa0878860:intron | 30.0% |
| TCAAACATATGAGATTTGAG+TGG | - | chr6_1:20328085-20328104 | Msa0878860:intron | 30.0% | |
| CAAACATATGAGATTTGAGT+GGG | - | chr6_1:20328086-20328105 | Msa0878860:intron | 30.0% | |
| ! | GATTTAGATCCACATTTTAG+CGG | - | chr6_1:20328147-20328166 | Msa0878860:intron | 30.0% |
| ATTAACTCATTGACATGTTG+AGG | - | chr6_1:20327404-20327423 | Msa0878860:intron | 30.0% | |
| ! | GTTGACCAAATTGAACTTTT+TGG | - | chr6_1:20328282-20328301 | Msa0878860:CDS | 30.0% |
| !!! | ATTTAGGGTTGTTTTTGTTG+AGG | - | chr6_1:20328410-20328429 | Msa0878860:intron | 30.0% |
| ! | TCAAATTGAAGAATTTTGGG+AGG | + | chr6_1:20328474-20328493 | None:intergenic | 30.0% |
| !! | GAATGATATGTTTGCTGTAT+TGG | - | chr6_1:20328531-20328550 | Msa0878860:CDS | 30.0% |
| ! | AATGTTTGAATAGTATTGGG+AGG | - | chr6_1:20328601-20328620 | Msa0878860:intron | 30.0% |
| !! | CTCAGTGAATTTTGACATTT+TGG | - | chr6_1:20328694-20328713 | Msa0878860:CDS | 30.0% |
| GAAGATTGTTGAATTCAGTA+CGG | - | chr6_1:20328821-20328840 | Msa0878860:intron | 30.0% | |
| !!! | TTTTTTTGTTCACAGGTTGA+AGG | - | chr6_1:20328919-20328938 | Msa0878860:intron | 30.0% |
| TTGAAAAGATGCAAATCTGT+TGG | + | chr6_1:20328994-20329013 | None:intergenic | 30.0% | |
| ! | GATTTGCATCTTTTCAAAGA+AGG | - | chr6_1:20328997-20329016 | Msa0878860:intron | 30.0% |
| TGGCTTATGTTTCAATTTCA+TGG | - | chr6_1:20329057-20329076 | Msa0878860:intron | 30.0% | |
| TTTGTCTTCGGTTTCAATTA+TGG | + | chr6_1:20329569-20329588 | None:intergenic | 30.0% | |
| CATCATAAATGAAGTAATGC+AGG | + | chr6_1:20329640-20329659 | None:intergenic | 30.0% | |
| !! | TGTTGATTGTTGAAGGTTTT+TGG | - | chr6_1:20329897-20329916 | Msa0878860:intron | 30.0% |
| ! | GTTGATTGTTGAAGGTTTTT+GGG | - | chr6_1:20329898-20329917 | Msa0878860:intron | 30.0% |
| ! | TTGATTGTTGAAGGTTTTTG+GGG | - | chr6_1:20329899-20329918 | Msa0878860:intron | 30.0% |
| GTGAAGAGGAAATATTTGTA+TGG | + | chr6_1:20329997-20330016 | None:intergenic | 30.0% | |
| !! | ACTCGCAATTTTGACAAAAA+TGG | + | chr6_1:20330033-20330052 | None:intergenic | 30.0% |
| ATCCTAAGCACTAATTCAAT+AGG | + | chr6_1:20330099-20330118 | None:intergenic | 30.0% | |
| TGCTTAGGATTTCTATGTAT+AGG | - | chr6_1:20330109-20330128 | Msa0878860:intron | 30.0% | |
| CTTCACTAATGACTAAACAA+CGG | + | chr6_1:20330153-20330172 | None:intergenic | 30.0% | |
| ! | GAATAGTCTAGTTTCTAAAC+TGG | + | chr6_1:20330222-20330241 | None:intergenic | 30.0% |
| AACAACTTCTAACTGCTTAT+TGG | - | chr6_1:20330338-20330357 | Msa0878860:intron | 30.0% | |
| ! | TAGTTTTTACATTTCCTGTG+TGG | - | chr6_1:20330375-20330394 | Msa0878860:intron | 30.0% |
| TATGTTAACTTCCAAAGAAC+CGG | + | chr6_1:20330407-20330426 | None:intergenic | 30.0% | |
| AGAGATTCCAAATGGTAATT+TGG | + | chr6_1:20330564-20330583 | None:intergenic | 30.0% | |
| TATTATTACATGCCAAATGC+AGG | - | chr6_1:20330670-20330689 | Msa0878860:intron | 30.0% | |
| TGTTATCACCATAATCCAAT+TGG | + | chr6_1:20330715-20330734 | None:intergenic | 30.0% | |
| GATTATGGTGATAACATTTG+TGG | - | chr6_1:20330719-20330738 | Msa0878860:intron | 30.0% | |
| TAGTATACAATAGCATCAAG+GGG | + | chr6_1:20331059-20331078 | None:intergenic | 30.0% | |
| GATAGTATACAATAGCATCA+AGG | + | chr6_1:20331061-20331080 | None:intergenic | 30.0% | |
| CTTAAACACCCAATAACATT+AGG | + | chr6_1:20331119-20331138 | None:intergenic | 30.0% | |
| CTAATGTTATTGGGTGTTTA+AGG | - | chr6_1:20331117-20331136 | Msa0878860:intron | 30.0% | |
| TATGTTAATTTCGTTACTCG+AGG | - | chr6_1:20331191-20331210 | Msa0878860:CDS | 30.0% | |
| AAACTCAACGAACCAAAAAG+GGG | - | chr6_1:20326132-20326151 | Msa0878860:three_prime_UTR | 35.0% | |
| !! | GACAATTTGGTGAGTGTTTT+CGG | + | chr6_1:20326234-20326253 | None:intergenic | 35.0% |
| AATCAGAGGAATCGACAATT+TGG | + | chr6_1:20326247-20326266 | None:intergenic | 35.0% | |
| TTTGACGTTGTAAGAATCAG+AGG | + | chr6_1:20326261-20326280 | None:intergenic | 35.0% | |
| GTGTTTGAAGAACCTTAAGA+GGG | + | chr6_1:20326328-20326347 | None:intergenic | 35.0% | |
| TGTGTTTGAAGAACCTTAAG+AGG | + | chr6_1:20326329-20326348 | None:intergenic | 35.0% | |
| ATTTGAACCTGTTGATGTGA+TGG | - | chr6_1:20326494-20326513 | Msa0878860:CDS | 35.0% | |
| TTTGAACCTGTTGATGTGAT+GGG | - | chr6_1:20326495-20326514 | Msa0878860:CDS | 35.0% | |
| !! | ATGAATCAGTTGGTAACTGT+AGG | - | chr6_1:20326539-20326558 | Msa0878860:CDS | 35.0% |
| !! | TGAATCAGTTGGTAACTGTA+GGG | - | chr6_1:20326540-20326559 | Msa0878860:CDS | 35.0% |
| ! | TAGGGACATTTTTGATGTGT+TGG | - | chr6_1:20326558-20326577 | Msa0878860:CDS | 35.0% |
| ! | AGGGACATTTTTGATGTGTT+GGG | - | chr6_1:20326559-20326578 | Msa0878860:CDS | 35.0% |
| !!! | ATTTTTTATGTGTGGGGACT+TGG | - | chr6_1:20326753-20326772 | Msa0878860:CDS | 35.0% |
| !!! | TTTTTTATGTGTGGGGACTT+GGG | - | chr6_1:20326754-20326773 | Msa0878860:CDS | 35.0% |
| GTACTTGCAGAACAAATCTT+CGG | + | chr6_1:20326878-20326897 | None:intergenic | 35.0% | |
| TCCTGACTTATTCACATGTA+AGG | - | chr6_1:20326965-20326984 | Msa0878860:intron | 35.0% | |
| ACCTTACATGTGAATAAGTC+AGG | + | chr6_1:20326969-20326988 | None:intergenic | 35.0% | |
| ACCCTGTTAAATCTGATCTA+TGG | + | chr6_1:20327066-20327085 | None:intergenic | 35.0% | |
| CAGGGTAACAAAATTGTACA+TGG | - | chr6_1:20327080-20327099 | Msa0878860:intron | 35.0% | |
| ACCAACTATGCTGTACTTAA+GGG | + | chr6_1:20327134-20327153 | None:intergenic | 35.0% | |
| TACCAACTATGCTGTACTTA+AGG | + | chr6_1:20327135-20327154 | None:intergenic | 35.0% | |
| ACCTTAATTGTGGATAAGTG+GGG | + | chr6_1:20327216-20327235 | None:intergenic | 35.0% | |
| CACCTTAATTGTGGATAAGT+GGG | + | chr6_1:20327217-20327236 | None:intergenic | 35.0% | |
| ACACCTTAATTGTGGATAAG+TGG | + | chr6_1:20327218-20327237 | None:intergenic | 35.0% | |
| AGAATCACACACCTTAATTG+TGG | + | chr6_1:20327226-20327245 | None:intergenic | 35.0% | |
| TAGTTTCTTTCACCATAGGT+TGG | - | chr6_1:20327300-20327319 | Msa0878860:intron | 35.0% | |
| GCACATCATCACACAAAAAA+TGG | + | chr6_1:20327582-20327601 | None:intergenic | 35.0% | |
| GAAAGTTCGGTACAGTTTAT+TGG | - | chr6_1:20327616-20327635 | Msa0878860:intron | 35.0% | |
| GCATCAACACTTCAAATTGA+AGG | - | chr6_1:20327663-20327682 | Msa0878860:intron | 35.0% | |
| TATGACATGCATGTTAGACT+TGG | - | chr6_1:20327697-20327716 | Msa0878860:intron | 35.0% | |
| ! | GGGGTGATAATTTGAGATAA+TGG | + | chr6_1:20327759-20327778 | None:intergenic | 35.0% |
| TGTCTGTATCTATGCTTCAT+AGG | - | chr6_1:20327790-20327809 | Msa0878860:intron | 35.0% | |
| ACAACCCAAAACATACAATG+TGG | + | chr6_1:20327851-20327870 | None:intergenic | 35.0% | |
| !!! | ACATTGTATGTTTTGGGTTG+TGG | - | chr6_1:20327850-20327869 | Msa0878860:intron | 35.0% |
| !!! | CATTGTATGTTTTGGGTTGT+GGG | - | chr6_1:20327851-20327870 | Msa0878860:intron | 35.0% |
| !!! | GCTGTTTTTGACTTTTGTTG+AGG | - | chr6_1:20327937-20327956 | Msa0878860:intron | 35.0% |
| ! | AGGTCAGATGGAAAGATTTT+GGG | + | chr6_1:20327999-20328018 | None:intergenic | 35.0% |
| ! | AAGGTCAGATGGAAAGATTT+TGG | + | chr6_1:20328000-20328019 | None:intergenic | 35.0% |
| AATCAACTTCAAAGGTCAGA+TGG | + | chr6_1:20328011-20328030 | None:intergenic | 35.0% | |
| AGAGATACAGCAAAGTTTAG+TGG | - | chr6_1:20328216-20328235 | Msa0878860:intron | 35.0% | |
| GAGATACAGCAAAGTTTAGT+GGG | - | chr6_1:20328217-20328236 | Msa0878860:intron | 35.0% | |
| GCAACCCAAAAAGTTCAATT+TGG | + | chr6_1:20328290-20328309 | None:intergenic | 35.0% | |
| ! | AACTTAGTGCTCTTTGAAGA+TGG | - | chr6_1:20328374-20328393 | Msa0878860:intron | 35.0% |
| ! | ACCAGAGCAAATTTGTGTTT+TGG | - | chr6_1:20328745-20328764 | Msa0878860:intron | 35.0% |
| ! | ACCAAAACACAAATTTGCTC+TGG | + | chr6_1:20328749-20328768 | None:intergenic | 35.0% |
| !! | TATGATTGGTTTCGAATTCC+AGG | + | chr6_1:20328786-20328805 | None:intergenic | 35.0% |
| AATTCGAAACCAATCATACG+AGG | - | chr6_1:20328788-20328807 | Msa0878860:intron | 35.0% | |
| TGATGTTATCCTCGTATGAT+TGG | + | chr6_1:20328800-20328819 | None:intergenic | 35.0% | |
| AGATGTTTGATGTATCGTGT+TGG | - | chr6_1:20328846-20328865 | Msa0878860:intron | 35.0% | |
| TGATGTATCGTGTTGGATTT+AGG | - | chr6_1:20328853-20328872 | Msa0878860:intron | 35.0% | |
| !! | TTCACAGGTTGAAGGATTTT+GGG | - | chr6_1:20328927-20328946 | Msa0878860:intron | 35.0% |
| AGATGCAAATCTGTTGGAAT+AGG | + | chr6_1:20328988-20329007 | None:intergenic | 35.0% | |
| AAGAAGGAATTCGTCCTTTA+TGG | - | chr6_1:20329013-20329032 | Msa0878860:intron | 35.0% | |
| AGAAGGAATTCGTCCTTTAT+GGG | - | chr6_1:20329014-20329033 | Msa0878860:intron | 35.0% | |
| TAAGTATCTACCTCCCATAA+AGG | + | chr6_1:20329030-20329049 | None:intergenic | 35.0% | |
| TATGGGAGGTAGATACTTAA+TGG | - | chr6_1:20329031-20329050 | Msa0878860:intron | 35.0% | |
| AGGTAGATACTTAATGGCTT+TGG | - | chr6_1:20329037-20329056 | Msa0878860:intron | 35.0% | |
| GTAGAAGTTTGTCCAAATGT+TGG | - | chr6_1:20329121-20329140 | Msa0878860:intron | 35.0% | |
| TTAGCAGAGTCCTTCAAAAA+AGG | + | chr6_1:20329172-20329191 | None:intergenic | 35.0% | |
| GTTTATCAGCAGACAAAACA+AGG | + | chr6_1:20329285-20329304 | None:intergenic | 35.0% | |
| ! | TATTTGAAATCCTCGTCCAT+AGG | - | chr6_1:20329515-20329534 | Msa0878860:intron | 35.0% |
| AGACAAACATTTCAGACCTA+TGG | + | chr6_1:20329534-20329553 | None:intergenic | 35.0% | |
| ! | TCAGTTGAACAGTTCAAGTT+TGG | - | chr6_1:20329717-20329736 | Msa0878860:intron | 35.0% |
| ! | CAGTTGAACAGTTCAAGTTT+GGG | - | chr6_1:20329718-20329737 | Msa0878860:intron | 35.0% |
| ! | AGTTGAACAGTTCAAGTTTG+GGG | - | chr6_1:20329719-20329738 | Msa0878860:intron | 35.0% |
| CAGTAACTTCATATAGAGGA+GGG | + | chr6_1:20329763-20329782 | None:intergenic | 35.0% | |
| TCAGTAACTTCATATAGAGG+AGG | + | chr6_1:20329764-20329783 | None:intergenic | 35.0% | |
| CAAAAATGGCTTACATCATG+TGG | + | chr6_1:20330019-20330038 | None:intergenic | 35.0% | |
| ACTAATTCAATAGGCAGAAG+GGG | + | chr6_1:20330090-20330109 | None:intergenic | 35.0% | |
| CACTAATTCAATAGGCAGAA+GGG | + | chr6_1:20330091-20330110 | None:intergenic | 35.0% | |
| TGCCTATTGAATTAGTGCTT+AGG | - | chr6_1:20330094-20330113 | Msa0878860:intron | 35.0% | |
| TTCACTGCATAATATGCACT+AGG | - | chr6_1:20330175-20330194 | Msa0878860:intron | 35.0% | |
| ! | TCTAGTTTCTAAACTGGGAA+AGG | + | chr6_1:20330216-20330235 | None:intergenic | 35.0% |
| GACTATTCTACTCGATGTAT+AGG | - | chr6_1:20330234-20330253 | Msa0878860:intron | 35.0% | |
| ! | CACTGTTCTAAACAAAGAGA+GGG | + | chr6_1:20330295-20330314 | None:intergenic | 35.0% |
| ! | ACACTGTTCTAAACAAAGAG+AGG | + | chr6_1:20330296-20330315 | None:intergenic | 35.0% |
| ATTTCCTGTGTGGATAATAC+CGG | - | chr6_1:20330385-20330404 | Msa0878860:intron | 35.0% | |
| ATCACGTGGAAACCAAATAA+AGG | + | chr6_1:20330476-20330495 | None:intergenic | 35.0% | |
| TTGAGATCAACAAAATCACG+TGG | + | chr6_1:20330490-20330509 | None:intergenic | 35.0% | |
| ATATAACGCACACACGTATA+GGG | + | chr6_1:20330832-20330851 | None:intergenic | 35.0% | |
| TATATAACGCACACACGTAT+AGG | + | chr6_1:20330833-20330852 | None:intergenic | 35.0% | |
| !!! | ACATTTCTGGTTTTTCACAC+AGG | - | chr6_1:20330878-20330897 | Msa0878860:intron | 35.0% |
| TTCGAGACAATTCATCTTAC+AGG | - | chr6_1:20330988-20331007 | Msa0878860:intron | 35.0% | |
| ATTCATCTTACAGGAACACT+TGG | - | chr6_1:20330997-20331016 | Msa0878860:intron | 35.0% | |
| TACAAGAGCAATCTGTCATA+AGG | + | chr6_1:20331312-20331331 | None:intergenic | 35.0% | |
| GGACTAGAATGAAAGAGAGA+GGG | + | chr6_1:20326109-20326128 | None:intergenic | 40.0% | |
| ! | TGGACTAGAATGAAAGAGAG+AGG | + | chr6_1:20326110-20326129 | None:intergenic | 40.0% |
| AACGAACCAAAAAGGGGATT+AGG | - | chr6_1:20326138-20326157 | Msa0878860:three_prime_UTR | 40.0% | |
| ACGAACCAAAAAGGGGATTA+GGG | - | chr6_1:20326139-20326158 | Msa0878860:three_prime_UTR | 40.0% | |
| ! | GAAAACCCTAATCCCCTTTT+TGG | + | chr6_1:20326147-20326166 | None:intergenic | 40.0% |
| TTCACGAGATTGTCGTTCTT+CGG | + | chr6_1:20326288-20326307 | None:intergenic | 40.0% | |
| TCTATTCCCATCACATCAAC+AGG | + | chr6_1:20326504-20326523 | None:intergenic | 40.0% | |
| ACGAGTTGTCATGAATCAGT+TGG | - | chr6_1:20326529-20326548 | Msa0878860:CDS | 40.0% | |
| ! | GGGACATTTTTGATGTGTTG+GGG | - | chr6_1:20326560-20326579 | Msa0878860:CDS | 40.0% |
| ! | GGACATTTTTGATGTGTTGG+GGG | - | chr6_1:20326561-20326580 | Msa0878860:CDS | 40.0% |
| AGCTTCCTAAATTCAAACCC+AGG | + | chr6_1:20326588-20326607 | None:intergenic | 40.0% | |
| TCATGTAAGTACAGCTCAGT+TGG | - | chr6_1:20326694-20326713 | Msa0878860:CDS | 40.0% | |
| TTCTGCAAGTACAACTCAGT+TGG | - | chr6_1:20326886-20326905 | Msa0878860:intron | 40.0% | |
| !! | AGTACAACTCAGTTGGTAGT+CGG | - | chr6_1:20326893-20326912 | Msa0878860:intron | 40.0% |
| AAACTTAATGTGTTGGGGTC+TGG | - | chr6_1:20326927-20326946 | Msa0878860:intron | 40.0% | |
| AACTTAATGTGTTGGGGTCT+GGG | - | chr6_1:20326928-20326947 | Msa0878860:intron | 40.0% | |
| TCCCTTAAGTACAGCATAGT+TGG | - | chr6_1:20327130-20327149 | Msa0878860:intron | 40.0% | |
| TCCCCACTTATCCACAATTA+AGG | - | chr6_1:20327212-20327231 | Msa0878860:intron | 40.0% | |
| GGTGTGTGATTCTTGTAACT+AGG | - | chr6_1:20327233-20327252 | Msa0878860:intron | 40.0% | |
| AATTATCACCCCTGTTAGTG+TGG | - | chr6_1:20327767-20327786 | Msa0878860:intron | 40.0% | |
| ATACAGACACCACACTAACA+GGG | + | chr6_1:20327779-20327798 | None:intergenic | 40.0% | |
| TCTCTCTCTCTCATCTTGTT+GGG | - | chr6_1:20328666-20328685 | Msa0878860:CDS | 40.0% | |
| ! | ACACAAATTTGCTCTGGTCA+AGG | + | chr6_1:20328743-20328762 | None:intergenic | 40.0% |
| !!! | TTGTGTTTTGGTACACTCGT+CGG | - | chr6_1:20328757-20328776 | Msa0878860:intron | 40.0% |
| !! | GTTCACAGGTTGAAGGATTT+TGG | - | chr6_1:20328926-20328945 | Msa0878860:intron | 40.0% |
| CAAATCTGTTGGAATAGGCA+AGG | + | chr6_1:20328983-20329002 | None:intergenic | 40.0% | |
| GTTCTGTTATGGAGAGAGAA+AGG | - | chr6_1:20329099-20329118 | Msa0878860:intron | 40.0% | |
| !!! | TTACCGTGTGCCTTTTTTGA+AGG | - | chr6_1:20329159-20329178 | Msa0878860:intron | 40.0% |
| ! | AGTCCTTCAAAAAAGGCACA+CGG | + | chr6_1:20329165-20329184 | None:intergenic | 40.0% |
| ! | CTAACTGCAATGGTGGAAAA+TGG | - | chr6_1:20329188-20329207 | Msa0878860:intron | 40.0% |
| CAAGACTCATCCTACTAGAT+GGG | + | chr6_1:20329439-20329458 | None:intergenic | 40.0% | |
| TGGGGTGGTGAAAAGTTTAA+AGG | - | chr6_1:20329737-20329756 | Msa0878860:intron | 40.0% | |
| CATGTGAATCCGATGTCAAT+TGG | - | chr6_1:20329854-20329873 | Msa0878860:intron | 40.0% | |
| CTAGCTGTTCCAATTGACAT+CGG | + | chr6_1:20329866-20329885 | None:intergenic | 40.0% | |
| GCACTAATTCAATAGGCAGA+AGG | + | chr6_1:20330092-20330111 | None:intergenic | 40.0% | |
| !! | TGTGGATAATACCGGTTCTT+TGG | - | chr6_1:20330393-20330412 | Msa0878860:intron | 40.0% |
| GGATCAGCCAAATTACCATT+TGG | - | chr6_1:20330554-20330573 | Msa0878860:intron | 40.0% | |
| CAAGCAAGAGAGATTCCAAA+TGG | + | chr6_1:20330572-20330591 | None:intergenic | 40.0% | |
| ! | CATTTGGAATCTCTCTTGCT+TGG | - | chr6_1:20330570-20330589 | Msa0878860:intron | 40.0% |
| ACTAAGCATTCGTTTCAACG+AGG | - | chr6_1:20330748-20330767 | Msa0878860:intron | 40.0% | |
| CCAGAAATGTTATGAAGGAC+AGG | + | chr6_1:20330868-20330887 | None:intergenic | 40.0% | |
| CCTGTCCTTCATAACATTTC+TGG | - | chr6_1:20330865-20330884 | Msa0878860:intron | 40.0% | |
| ! | GTTTTTCACACAGGCTGTAA+TGG | - | chr6_1:20330887-20330906 | Msa0878860:intron | 40.0% |
| ! | TGACACTGCCTTTTGAACAT+TGG | - | chr6_1:20331087-20331106 | Msa0878860:intron | 40.0% |
| ! | CACCCAATAACATTAGGTTG+CGG | + | chr6_1:20331113-20331132 | None:intergenic | 40.0% |
| TATGATCCTTTCCTTCAGCA+AGG | + | chr6_1:20331278-20331297 | None:intergenic | 40.0% | |
| CAATCTCGTGAACTCAAAGC+TGG | - | chr6_1:20326296-20326315 | Msa0878860:three_prime_UTR | 45.0% | |
| TACAGACACCACACTAACAG+GGG | + | chr6_1:20327778-20327797 | None:intergenic | 45.0% | |
| GATACAGACACCACACTAAC+AGG | + | chr6_1:20327780-20327799 | None:intergenic | 45.0% | |
| CTCTCTCTCTCTCATCTTGT+TGG | - | chr6_1:20328665-20328684 | Msa0878860:CDS | 45.0% | |
| TCTCTCTCATCTTGTTGGGA+AGG | - | chr6_1:20328670-20328689 | Msa0878860:CDS | 45.0% | |
| CTCTCTCATCTTGTTGGGAA+GGG | - | chr6_1:20328671-20328690 | Msa0878860:CDS | 45.0% | |
| !!! | TGTGTTTTGGTACACTCGTC+GGG | - | chr6_1:20328758-20328777 | Msa0878860:intron | 45.0% |
| GTTGGAATAGGCAAGGAAGA+AGG | + | chr6_1:20328976-20328995 | None:intergenic | 45.0% | |
| AGGAATTCGTCCTTTATGGG+AGG | - | chr6_1:20329017-20329036 | Msa0878860:intron | 45.0% | |
| AAGGACTCTGCTAACTGCAA+TGG | - | chr6_1:20329178-20329197 | Msa0878860:intron | 45.0% | |
| CGATTCAAAAAGGCTGTCTC+AGG | - | chr6_1:20329217-20329236 | Msa0878860:intron | 45.0% | |
| ATGTACCCTTCCCATCTAGT+AGG | - | chr6_1:20329426-20329445 | Msa0878860:intron | 45.0% | |
| CTCATCCTACTAGATGGGAA+GGG | + | chr6_1:20329434-20329453 | None:intergenic | 45.0% | |
| ACTCATCCTACTAGATGGGA+AGG | + | chr6_1:20329435-20329454 | None:intergenic | 45.0% | |
| CCAAGACTCATCCTACTAGA+TGG | + | chr6_1:20329440-20329459 | None:intergenic | 45.0% | |
| CCATCTAGTAGGATGAGTCT+TGG | - | chr6_1:20329437-20329456 | Msa0878860:intron | 45.0% | |
| GTAGGATGAGTCTTGGTTGT+TGG | - | chr6_1:20329444-20329463 | Msa0878860:intron | 45.0% | |
| ACATTTCAGACCTATGGACG+AGG | + | chr6_1:20329528-20329547 | None:intergenic | 45.0% | |
| TATGGCTGTTCATAGTGCAC+TGG | - | chr6_1:20329677-20329696 | Msa0878860:intron | 45.0% | |
| !! | CATAGTGCACTGGTTGATGT+TGG | - | chr6_1:20329687-20329706 | Msa0878860:intron | 45.0% |
| ! | TGAACAGTTCAAGTTTGGGG+TGG | - | chr6_1:20329722-20329741 | Msa0878860:intron | 45.0% |
| CGATGTCAATTGGAACAGCT+AGG | - | chr6_1:20329864-20329883 | Msa0878860:intron | 45.0% | |
| GCTTACATCATGTGGTGAAG+AGG | + | chr6_1:20330011-20330030 | None:intergenic | 45.0% | |
| GTATGATTGCATGAGCAACG+AGG | + | chr6_1:20330058-20330077 | None:intergenic | 45.0% | |
| AGAACCGGTATTATCCACAC+AGG | + | chr6_1:20330392-20330411 | None:intergenic | 45.0% | |
| ATCTCATCATCTATGCCCTG+TGG | - | chr6_1:20330598-20330617 | Msa0878860:intron | 45.0% | |
| GTGGGTGACCAATTGGATTA+TGG | - | chr6_1:20330704-20330723 | Msa0878860:intron | 45.0% | |
| AATGCCTCTGATCATCAGGT+TGG | - | chr6_1:20330794-20330813 | Msa0878860:intron | 45.0% | |
| TACTCCATAACATAGCCGTG+AGG | + | chr6_1:20330948-20330967 | None:intergenic | 45.0% | |
| !! | TCTCGAAGAGAAGCATCATG+CGG | + | chr6_1:20330975-20330994 | None:intergenic | 45.0% |
| TACAGGAACACTTGGTTGAG+AGG | - | chr6_1:20331005-20331024 | Msa0878860:intron | 45.0% | |
| ACAATAGCATCAAGGGGACT+AGG | + | chr6_1:20331053-20331072 | None:intergenic | 45.0% | |
| TGGCCGCAACCTAATGTTAT+TGG | - | chr6_1:20331107-20331126 | Msa0878860:intron | 45.0% | |
| GGCCGCAACCTAATGTTATT+GGG | - | chr6_1:20331108-20331127 | Msa0878860:intron | 45.0% | |
| !!! | AAAATATTTTATTCAAAATT+GGG | - | chr6_1:20329371-20329390 | Msa0878860:intron | 5.0% |
| !! | AGCTGGTCTTCACCCTCTTA+AGG | - | chr6_1:20326313-20326332 | Msa0878860:three_prime_UTR | 50.0% |
| ! | TTTTGATGTGTTGGGGGACC+TGG | - | chr6_1:20326567-20326586 | Msa0878860:CDS | 50.0% |
| TTTGATGTGTTGGGGGACCT+GGG | - | chr6_1:20326568-20326587 | Msa0878860:CDS | 50.0% | |
| GGGGACCTGGGTTTGAATTT+AGG | - | chr6_1:20326580-20326599 | Msa0878860:intron | 50.0% | |
| TGGGGACTTGGGTTCGAATT+TGG | - | chr6_1:20326765-20326784 | Msa0878860:CDS | 50.0% | |
| GGGGACTTGGGTTCGAATTT+GGG | - | chr6_1:20326766-20326785 | Msa0878860:CDS | 50.0% | |
| GGTGTGCGATTCTCGATACT+AGG | - | chr6_1:20326986-20327005 | Msa0878860:intron | 50.0% | |
| !! | ACAGCATAGTTGGTAGCTGC+AGG | - | chr6_1:20327140-20327159 | Msa0878860:intron | 50.0% |
| !! | CAGCATAGTTGGTAGCTGCA+GGG | - | chr6_1:20327141-20327160 | Msa0878860:intron | 50.0% |
| TAATCTGATGTGTTGGGGCC+TGG | - | chr6_1:20327174-20327193 | Msa0878860:intron | 50.0% | |
| AATCTGATGTGTTGGGGCCT+GGG | - | chr6_1:20327175-20327194 | Msa0878860:intron | 50.0% | |
| GGAATCTCGAGTTCAAACCC+AGG | + | chr6_1:20327195-20327214 | None:intergenic | 50.0% | |
| GTAACTACATGAGTCGGTGC+TGG | + | chr6_1:20327726-20327745 | None:intergenic | 50.0% | |
| TGGTGCAAGCCGCTAAAATG+TGG | + | chr6_1:20328159-20328178 | None:intergenic | 50.0% | |
| AGGAAGAAGGACGAGCAAGA+TGG | + | chr6_1:20328963-20328982 | None:intergenic | 50.0% | |
| GACTCTGCTAACTGCAATGG+TGG | - | chr6_1:20329181-20329200 | Msa0878860:intron | 50.0% | |
| !! | AGGCTGTCTCAGGTCGTTTT+TGG | - | chr6_1:20329227-20329246 | Msa0878860:intron | 50.0% |
| !!! | GGCTGTCTCAGGTCGTTTTT+GGG | - | chr6_1:20329228-20329247 | Msa0878860:intron | 50.0% |
| !!! | TGTCTCAGGTCGTTTTTGGG+AGG | - | chr6_1:20329231-20329250 | Msa0878860:intron | 50.0% |
| !!! | AGGTCGTTTTTGGGAGGATC+TGG | - | chr6_1:20329237-20329256 | Msa0878860:intron | 50.0% |
| GGATGAGTCTTGGTTGTTGG+TGG | - | chr6_1:20329447-20329466 | Msa0878860:intron | 50.0% | |
| ATCCAATTGGTCACCCACCA+AGG | + | chr6_1:20330702-20330721 | None:intergenic | 50.0% | |
| ACGAGGACATAGTGAGTGTC+TGG | - | chr6_1:20330765-20330784 | Msa0878860:intron | 50.0% | |
| TCGCAATGCCTCTGATCATC+AGG | - | chr6_1:20330790-20330809 | Msa0878860:intron | 50.0% | |
| GATGCCAACCTGATGATCAG+AGG | + | chr6_1:20330801-20330820 | None:intergenic | 50.0% | |
| CGTCACCTAAAGCTTCCTCA+CGG | - | chr6_1:20330930-20330949 | Msa0878860:intron | 50.0% | |
| CATAGCCGTGAGGAAGCTTT+AGG | + | chr6_1:20330938-20330957 | None:intergenic | 50.0% | |
| GCTTCCTCACGGCTATGTTA+TGG | - | chr6_1:20330941-20330960 | Msa0878860:intron | 50.0% | |
| GGTTGCGGCCAATGTTCAAA+AGG | + | chr6_1:20331098-20331117 | None:intergenic | 50.0% | |
| TGTTGCGTTCACCTTGCTGA+AGG | - | chr6_1:20331264-20331283 | Msa0878860:CDS | 50.0% | |
| CGTTCACCTTGCTGAAGGAA+AGG | - | chr6_1:20331269-20331288 | Msa0878860:CDS | 50.0% | |
| CCAAGGCAAGCACCTGCATT+TGG | + | chr6_1:20330685-20330704 | None:intergenic | 55.0% | |
| CCAAATGCAGGTGCTTGCCT+TGG | - | chr6_1:20330682-20330701 | Msa0878860:intron | 55.0% | |
| AATGCAGGTGCTTGCCTTGG+TGG | - | chr6_1:20330685-20330704 | Msa0878860:intron | 55.0% | |
| ATGCAGGTGCTTGCCTTGGT+GGG | - | chr6_1:20330686-20330705 | Msa0878860:intron | 55.0% | |
| ! | TGCCTTGGTGGGTGACCAAT+TGG | - | chr6_1:20330697-20330716 | Msa0878860:intron | 55.0% |
| TGGTACACTCGTCGGGTACC+TGG | - | chr6_1:20328765-20328784 | Msa0878860:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 20326097 | 20331392 | 20326097 | ID=Msa0878860;Name=Msa0878860 |
| chr6_1 | mRNA | 20326097 | 20331392 | 20326097 | ID=Msa0878860-mRNA-1;Parent=Msa0878860;Name=Msa0878860-mRNA-1;_AED=0.04;_eAED=0.04;_QI=82|1|1|1|1|1|6|361|227 |
| chr6_1 | exon | 20326097 | 20326589 | 20326097 | ID=Msa0878860-mRNA-1:exon:5514;Parent=Msa0878860-mRNA-1 |
| chr6_1 | exon | 20326678 | 20326797 | 20326678 | ID=Msa0878860-mRNA-1:exon:5513;Parent=Msa0878860-mRNA-1 |
| chr6_1 | exon | 20328231 | 20328308 | 20328231 | ID=Msa0878860-mRNA-1:exon:5512;Parent=Msa0878860-mRNA-1 |
| chr6_1 | exon | 20328451 | 20328555 | 20328451 | ID=Msa0878860-mRNA-1:exon:5511;Parent=Msa0878860-mRNA-1 |
| chr6_1 | exon | 20328647 | 20328739 | 20328647 | ID=Msa0878860-mRNA-1:exon:5510;Parent=Msa0878860-mRNA-1 |
| chr6_1 | exon | 20331155 | 20331392 | 20331155 | ID=Msa0878860-mRNA-1:exon:5509;Parent=Msa0878860-mRNA-1 |
| chr6_1 | five_prime_UTR | 20331311 | 20331392 | 20331311 | ID=Msa0878860-mRNA-1:five_prime_utr;Parent=Msa0878860-mRNA-1 |
| chr6_1 | CDS | 20331155 | 20331310 | 20331155 | ID=Msa0878860-mRNA-1:cds;Parent=Msa0878860-mRNA-1 |
| chr6_1 | CDS | 20328647 | 20328739 | 20328647 | ID=Msa0878860-mRNA-1:cds;Parent=Msa0878860-mRNA-1 |
| chr6_1 | CDS | 20328451 | 20328555 | 20328451 | ID=Msa0878860-mRNA-1:cds;Parent=Msa0878860-mRNA-1 |
| chr6_1 | CDS | 20328231 | 20328308 | 20328231 | ID=Msa0878860-mRNA-1:cds;Parent=Msa0878860-mRNA-1 |
| chr6_1 | CDS | 20326678 | 20326797 | 20326678 | ID=Msa0878860-mRNA-1:cds;Parent=Msa0878860-mRNA-1 |
| chr6_1 | CDS | 20326458 | 20326589 | 20326458 | ID=Msa0878860-mRNA-1:cds;Parent=Msa0878860-mRNA-1 |
| chr6_1 | three_prime_UTR | 20326097 | 20326457 | 20326097 | ID=Msa0878860-mRNA-1:three_prime_utr;Parent=Msa0878860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
