Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899990 | XP_003620614.2 | 93.617 | 94 | 6 | 0 | 46 | 139 | 34 | 127 | 5.08e-60 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899990 | sp|O02414|DYL1_HELCR | 44.444 | 90 | 48 | 1 | 47 | 136 | 1 | 88 | 7.15e-21 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899990 | A0A396HHX3 | 93.617 | 94 | 6 | 0 | 46 | 139 | 34 | 127 | 2.43e-60 | 191 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015140 | Msa0899990 | 0.815349 | 9.676461e-52 | -8.615850e-47 |
| Msa0042550 | Msa0899990 | 0.815693 | 8.110944e-52 | -8.615850e-47 |
| Msa0043500 | Msa0899990 | 0.800929 | 1.144120e-48 | -8.615850e-47 |
| Msa0057590 | Msa0899990 | 0.805440 | 1.333479e-49 | -8.615850e-47 |
| Msa0178510 | Msa0899990 | 0.818773 | 1.645675e-52 | -8.615850e-47 |
| Msa0205010 | Msa0899990 | 0.804211 | 2.408667e-49 | -8.615850e-47 |
| Msa0468320 | Msa0899990 | 0.801357 | 9.355542e-49 | -8.615850e-47 |
| Msa0518440 | Msa0899990 | 0.811301 | 7.498964e-51 | -8.615850e-47 |
| Msa0521670 | Msa0899990 | 0.808859 | 2.517738e-50 | -8.615850e-47 |
| Msa0899990 | Msa0965370 | 0.962780 | 2.752857e-121 | -8.615850e-47 |
| Msa0899990 | Msa0999860 | 0.937649 | 2.456080e-98 | -8.615850e-47 |
| Msa0899990 | Msa1001990 | 0.946684 | 2.881853e-105 | -8.615850e-47 |
| Msa0899990 | Msa1064250 | 0.802828 | 4.660384e-49 | -8.615850e-47 |
| Msa0899990 | Msa1163540 | 0.817114 | 3.901003e-52 | -8.615850e-47 |
| Msa0899990 | Msa1286550 | 0.801560 | 8.501023e-49 | -8.615850e-47 |
| Msa0899990 | Msa1372150 | 0.806115 | 9.619315e-50 | -8.615850e-47 |
| Msa0899990 | Msa1381480 | 0.805089 | 1.579614e-49 | -8.615850e-47 |
| Msa0899990 | Msa1388960 | 0.914825 | 1.216636e-84 | -8.615850e-47 |
| Msa0899990 | Msa1407190 | 0.819581 | 1.077286e-52 | -8.615850e-47 |
| Msa0899990 | Msa1432130 | 0.816560 | 5.192106e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899990 | MtrunA17_Chr6g0485891 | 93.617 | 94 | 6 | 0 | 46 | 139 | 34 | 127 | 4.67e-64 | 191 |
| Msa0899990 | MtrunA17_Chr2g0331651 | 74.444 | 90 | 23 | 0 | 47 | 136 | 1 | 90 | 9.27e-50 | 154 |
| Msa0899990 | MtrunA17_Chr8g0360861 | 51.087 | 92 | 45 | 0 | 47 | 138 | 1 | 92 | 4.46e-30 | 104 |
| Msa0899990 | MtrunA17_Chr4g0063491 | 45.570 | 79 | 43 | 0 | 57 | 135 | 159 | 237 | 1.15e-19 | 81.6 |
| Msa0899990 | MtrunA17_Chr4g0059791 | 44.444 | 81 | 44 | 1 | 58 | 137 | 222 | 302 | 1.06e-16 | 74.7 |
| Msa0899990 | MtrunA17_Chr8g0391451 | 36.905 | 84 | 51 | 1 | 54 | 135 | 56 | 139 | 2.69e-16 | 70.9 |
| Msa0899990 | MtrunA17_Chr4g0067531 | 36.471 | 85 | 52 | 1 | 51 | 135 | 46 | 128 | 3.01e-16 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0899990 | AT1G52245.1 | 76.344 | 93 | 22 | 0 | 47 | 139 | 1 | 93 | 9.47e-52 | 159 |
| Msa0899990 | AT3G16120.2 | 72.826 | 92 | 25 | 0 | 47 | 138 | 1 | 92 | 3.47e-47 | 148 |
| Msa0899990 | AT3G16120.1 | 72.826 | 92 | 25 | 0 | 47 | 138 | 1 | 92 | 3.47e-47 | 148 |
| Msa0899990 | AT4G27360.1 | 53.846 | 91 | 42 | 0 | 47 | 137 | 1 | 91 | 1.26e-31 | 108 |
| Msa0899990 | AT5G20110.1 | 46.154 | 78 | 42 | 0 | 58 | 135 | 123 | 200 | 3.12e-18 | 77.4 |
| Msa0899990 | AT4G15930.1 | 38.824 | 85 | 50 | 1 | 51 | 135 | 39 | 121 | 1.93e-17 | 73.6 |
| Msa0899990 | AT1G23220.1 | 36.471 | 85 | 53 | 1 | 54 | 137 | 38 | 122 | 2.68e-17 | 73.2 |
Find 23 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTATAGATTAGAAAATTA+AGG | 0.208962 | 6_1:+95392463 | None:intergenic |
| CAGGAGTTTGATAAGAATTA+TGG | 0.245035 | 6_1:-95392573 | Msa0899990:CDS |
| TGTGTAGTAGGTTCCAATTT+TGG | 0.285821 | 6_1:-95392537 | Msa0899990:CDS |
| CTTATAGATTAGAAAATTAA+GGG | 0.370499 | 6_1:+95392464 | None:intergenic |
| TGTGATTGTAGATCAATTGC+TGG | 0.417111 | 6_1:-95393161 | Msa0899990:CDS |
| TGTGATTGTAGATCAATTGC+TGG | 0.453871 | 6_1:-95398146 | Msa0899990:CDS |
| TTGATAAGAATTATGGAAGT+GGG | 0.454204 | 6_1:-95392566 | Msa0899990:CDS |
| ATATAAAGGTCCCTGGTGTA+TGG | 0.455885 | 6_1:+95392502 | None:intergenic |
| CTAAAGATGTTGGAAGGAAA+AGG | 0.470654 | 6_1:-95398254 | None:intergenic |
| CTCAAGATGTTGGAAGGAAA+AGG | 0.486434 | 6_1:-95393269 | Msa0899990:intron |
| TTTGATAAGAATTATGGAAG+TGG | 0.490477 | 6_1:-95392567 | Msa0899990:CDS |
| AGTGGGTGGCAATGTGTAGT+AGG | 0.509524 | 6_1:-95392549 | Msa0899990:CDS |
| GCTTGAATTTGCATCTTCAA+AGG | 0.513495 | 6_1:+95393224 | None:intergenic |
| GCTTGAATTTGCATCTTCAA+AGG | 0.513495 | 6_1:+95398209 | Msa0900000:intron |
| GAGCAACTCAAGATGTTGGA+AGG | 0.579416 | 6_1:-95393275 | Msa0899990:intron |
| AAGCAACTAAAGATGTTGGA+AGG | 0.603964 | 6_1:-95398260 | None:intergenic |
| AATTGCTGGTAATATCAAGA+AGG | 0.615321 | 6_1:-95398132 | Msa0899990:intron |
| ATAAGAATTATGGAAGTGGG+TGG | 0.626217 | 6_1:-95392563 | Msa0899990:CDS |
| AGCTTGAGAAGCAAATGACA+TGG | 0.664039 | 6_1:+95393202 | None:intergenic |
| AGCTTGAGAAGCAAATGACA+TGG | 0.664039 | 6_1:+95398187 | Msa0900000:intron |
| GCTCAAGGAGAACAATCAAG+AGG | 0.668274 | 6_1:+95392434 | None:intergenic |
| GATGTTGGAAGGAAAAGGTG+TGG | 0.730714 | 6_1:-95398249 | Msa0899990:CDS |
| GATGTTGGAAGGAAAAGGTG+TGG | 0.758385 | 6_1:-95393264 | Msa0899990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTATTTTTTATTTAAT+AGG | - | chr6_1:95397947-95397966 | Msa0899990:intron | 0.0% |
| !! | AATAATTAGCATAAATTAAA+AGG | + | chr6_1:95392981-95393000 | None:intergenic | 10.0% |
| !!! | GTCAATAAAAATAAAAATTT+TGG | - | chr6_1:95393073-95393092 | Msa0899990:intron | 10.0% |
| !!! | CAATAAAAATAAAAATTTTG+GGG | - | chr6_1:95393075-95393094 | Msa0899990:intron | 10.0% |
| !! | TTTATATTAGCATATAAAAT+TGG | + | chr6_1:95396012-95396031 | Msa0900000:intron | 10.0% |
| !! | TATGTGAAAAAAAATAAAAA+TGG | + | chr6_1:95396351-95396370 | Msa0900000:intron | 10.0% |
| !! | GTTTATAAATACAAATAAAA+TGG | + | chr6_1:95396453-95396472 | Msa0900000:intron | 10.0% |
| !! | TTCCAATTAATAATTAAATA+AGG | - | chr6_1:95398085-95398104 | Msa0899990:intron | 10.0% |
| !!! | AACCTTATTTAATTATTAAT+TGG | + | chr6_1:95398090-95398109 | Msa0900000:intron | 10.0% |
| !! | TGAAAATATTAGAATGAATT+TGG | + | chr6_1:95392670-95392689 | None:intergenic | 15.0% |
| !! | CTAAACAAATTATTTGTATT+TGG | + | chr6_1:95392821-95392840 | None:intergenic | 15.0% |
| !!! | CAAATACAAATAATTTGTTT+AGG | - | chr6_1:95392819-95392838 | Msa0899990:intron | 15.0% |
| !! | TAATTATTTGCAAATGAATT+TGG | - | chr6_1:95392993-95393012 | Msa0899990:intron | 15.0% |
| !! | GTAGCTAAAAAAATATTATT+GGG | - | chr6_1:95393021-95393040 | Msa0899990:intron | 15.0% |
| !! | TAGCTAAAAAAATATTATTG+GGG | - | chr6_1:95393022-95393041 | Msa0899990:intron | 15.0% |
| !!! | TTTATTTTTATTGACTCATT+AGG | + | chr6_1:95393068-95393087 | None:intergenic | 15.0% |
| !! | ATTAAACTATATCATATCTA+AGG | - | chr6_1:95394656-95394675 | Msa0899990:intron | 15.0% |
| !! | GTGAAAAATTGTAATATATT+TGG | - | chr6_1:95394743-95394762 | Msa0899990:intron | 15.0% |
| !!! | AAACTAAAAACTTTTTTTAG+AGG | - | chr6_1:95395964-95395983 | Msa0899990:intron | 15.0% |
| !! | TGAAAAAAAATAAAAATGGT+TGG | + | chr6_1:95396347-95396366 | Msa0900000:intron | 15.0% |
| !! | TTATTCAAGAATAACAAAAT+TGG | - | chr6_1:95396661-95396680 | Msa0899990:intron | 15.0% |
| !! | TATATCCTTATCAAAAAATT+CGG | - | chr6_1:95397226-95397245 | Msa0899990:intron | 15.0% |
| !! | AATATTTAAATTGAACTTTG+CGG | + | chr6_1:95397837-95397856 | Msa0900000:intron | 15.0% |
| !! | AATTTAAATATTCCAAAACA+TGG | - | chr6_1:95397845-95397864 | Msa0899990:intron | 15.0% |
| !! | ATTTAAATATTCCAAAACAT+GGG | - | chr6_1:95397846-95397865 | Msa0899990:intron | 15.0% |
| !!! | TTTTTTATTTAATAGGATGA+AGG | - | chr6_1:95397954-95397973 | Msa0899990:intron | 15.0% |
| !!! | TTTTTATTTAATAGGATGAA+GGG | - | chr6_1:95397955-95397974 | Msa0899990:intron | 15.0% |
| !! | CTTATAGATTAGAAAATTAA+GGG | + | chr6_1:95398236-95398255 | Msa0900000:intron | 15.0% |
| !!! | CTTAATTTTCTAATCTATAA+GGG | - | chr6_1:95398235-95398254 | Msa0899990:CDS | 15.0% |
| !!! | GAAAATCACTCAATTTTTTT+GGG | + | chr6_1:95392631-95392650 | None:intergenic | 20.0% |
| !! | AATGTACAATTAGTATAAAC+AGG | + | chr6_1:95392754-95392773 | None:intergenic | 20.0% |
| !! | GGTAGCTAAAAAAATATTAT+TGG | - | chr6_1:95393020-95393039 | Msa0899990:intron | 20.0% |
| !!! | TTTAACTAATAATTTTGTCC+TGG | - | chr6_1:95393346-95393365 | Msa0899990:intron | 20.0% |
| !! | ATTTGAATAGAATGGATAAA+TGG | - | chr6_1:95393408-95393427 | Msa0899990:intron | 20.0% |
| !!! | TTCATGTTTTACTTGAATTT+GGG | + | chr6_1:95393598-95393617 | None:intergenic | 20.0% |
| !!! | TTTCATGTTTTACTTGAATT+TGG | + | chr6_1:95393599-95393618 | None:intergenic | 20.0% |
| !! | AGTAGATAATGAAAAGTAAA+TGG | - | chr6_1:95393634-95393653 | Msa0899990:intron | 20.0% |
| !! | TATTATTCGTTATAATCTAG+TGG | + | chr6_1:95394091-95394110 | None:intergenic | 20.0% |
| !! | TGAATAAAAATCTTTGTCAT+TGG | + | chr6_1:95394413-95394432 | Msa0900000:intron | 20.0% |
| !!! | TGATTGAAGTTTGTATATTT+TGG | + | chr6_1:95394848-95394867 | Msa0900000:intron | 20.0% |
| !!! | TTTTTAACTGAAACATGAAT+TGG | + | chr6_1:95395015-95395034 | Msa0900000:intron | 20.0% |
| !! | AAGCTGAAAATAAACTATAA+AGG | - | chr6_1:95395100-95395119 | Msa0899990:intron | 20.0% |
| !!! | CCACAAATTATATTTTTTAG+AGG | + | chr6_1:95395773-95395792 | Msa0900000:intron | 20.0% |
| !!! | CCTCTAAAAAATATAATTTG+TGG | - | chr6_1:95395770-95395789 | Msa0899990:intron | 20.0% |
| !! | TGCTTATGAAAAATAATTGA+AGG | - | chr6_1:95395883-95395902 | Msa0899990:intron | 20.0% |
| !! | TAATATAAATTAACCCATCT+GGG | - | chr6_1:95396023-95396042 | Msa0899990:intron | 20.0% |
| !!! | TAGTAATTGACTTAAGATTT+TGG | - | chr6_1:95396052-95396071 | Msa0899990:intron | 20.0% |
| !!! | GATTCATGACTATATTTTAA+TGG | - | chr6_1:95396425-95396444 | Msa0899990:intron | 20.0% |
| !!! | TTTGAAAAGGTATGTAATAA+GGG | + | chr6_1:95396555-95396574 | Msa0900000:CDS | 20.0% |
| !!! | TTTTGAAAAGGTATGTAATA+AGG | + | chr6_1:95396556-95396575 | Msa0900000:CDS | 20.0% |
| !!! | ATCACACTAAAATTTTGAAA+AGG | + | chr6_1:95396568-95396587 | Msa0900000:CDS | 20.0% |
| !! | TGTTATTCTTGAATAAACTT+TGG | + | chr6_1:95396657-95396676 | Msa0900000:intron | 20.0% |
| !!! | ATTTTTTTTTCTCTTCAAAG+TGG | + | chr6_1:95397126-95397145 | Msa0900000:intron | 20.0% |
| !! | ATATCCTTATCAAAAAATTC+GGG | - | chr6_1:95397227-95397246 | Msa0899990:intron | 20.0% |
| !! | TTGAATTGAATGAATGATTA+AGG | + | chr6_1:95397284-95397303 | Msa0900000:intron | 20.0% |
| !! | ATCATTCATTCAATTCAAAA+TGG | - | chr6_1:95397286-95397305 | Msa0899990:intron | 20.0% |
| !! | GGAAAATAACTCAAATTTAA+GGG | + | chr6_1:95397612-95397631 | Msa0900000:intron | 20.0% |
| !! | TGGAAAATAACTCAAATTTA+AGG | + | chr6_1:95397613-95397632 | Msa0900000:intron | 20.0% |
| !! | GAAAATATTAGAGATGAATT+TGG | + | chr6_1:95397650-95397669 | Msa0900000:intron | 20.0% |
| !!! | TATTTTATGAGTTTGAAGTT+TGG | - | chr6_1:95398056-95398075 | Msa0899990:intron | 20.0% |
| !! | TAATTAAATAAGGTTGTGTT+TGG | - | chr6_1:95398095-95398114 | Msa0899990:intron | 20.0% |
| !! | CTCAAGAGAAAAATATATAA+AGG | + | chr6_1:95398212-95398231 | Msa0900000:intron | 20.0% |
| !! | CCTTATAGATTAGAAAATTA+AGG | + | chr6_1:95398237-95398256 | Msa0900000:intron | 20.0% |
| !!! | CCTTAATTTTCTAATCTATA+AGG | - | chr6_1:95398234-95398253 | Msa0899990:CDS | 20.0% |
| !!! | GGAAAATCACTCAATTTTTT+TGG | + | chr6_1:95392632-95392651 | None:intergenic | 25.0% |
| ! | TGAATTTGGATTTATGAGAT+TGG | + | chr6_1:95392656-95392675 | None:intergenic | 25.0% |
| ! | ACTAATTGTACATTTCTTTG+TGG | - | chr6_1:95392760-95392779 | Msa0899990:intron | 25.0% |
| ! | AAATTGTGTTGTGAGTAAAT+AGG | + | chr6_1:95393205-95393224 | None:intergenic | 25.0% |
| ! | TTTCTATTCAATAAAGCAAG+AGG | - | chr6_1:95393321-95393340 | Msa0899990:intron | 25.0% |
| ! | ATTCTATTCAAATGAACAAG+AGG | + | chr6_1:95393401-95393420 | None:intergenic | 25.0% |
| ! | TCTTGTTCATTTGAATAGAA+TGG | - | chr6_1:95393400-95393419 | Msa0899990:intron | 25.0% |
| ! | TCTTGTTCATTTGAATAGAA+CGG | - | chr6_1:95393400-95393419 | Msa0899990:intron | 25.0% |
| ! | AAAGTAAAAGGTGATTTACT+AGG | + | chr6_1:95393511-95393530 | None:intergenic | 25.0% |
| !! | AGTAAATCACCTTTTACTTT+AGG | - | chr6_1:95393511-95393530 | Msa0899990:intron | 25.0% |
| !! | TCATGTTTTACTTGAATTTG+GGG | + | chr6_1:95393597-95393616 | None:intergenic | 25.0% |
| ! | TAAATGGCTCAGAAAATAAT+GGG | - | chr6_1:95393650-95393669 | Msa0899990:intron | 25.0% |
| ! | AAAATCATCATACAAGAAGT+TGG | - | chr6_1:95393816-95393835 | Msa0899990:intron | 25.0% |
| !!! | ATGATGTTATTTTCCTTCTT+TGG | + | chr6_1:95393851-95393870 | None:intergenic | 25.0% |
| ! | CAATGTATCATCATATTCAT+TGG | - | chr6_1:95393919-95393938 | Msa0899990:intron | 25.0% |
| ! | CATATTCATTGGATAATTAC+AGG | - | chr6_1:95393930-95393949 | Msa0899990:intron | 25.0% |
| !! | TGGTTTGTATAATGTATCAA+TGG | + | chr6_1:95394064-95394083 | None:intergenic | 25.0% |
| ! | AGCCTTAAATTTATCATCAT+CGG | - | chr6_1:95394226-95394245 | Msa0899990:intron | 25.0% |
| !! | ATGTGTTTTGTGTCAAATTT+TGG | + | chr6_1:95394638-95394657 | Msa0900000:intron | 25.0% |
| ! | ACTATAAAGGTAAAATCAAG+AGG | - | chr6_1:95395113-95395132 | Msa0899990:intron | 25.0% |
| ! | TATTCTTCAATTACCATCTT+AGG | + | chr6_1:95395149-95395168 | Msa0900000:intron | 25.0% |
| ! | AAGATGGTAATTGAAGAATA+TGG | - | chr6_1:95395149-95395168 | Msa0899990:intron | 25.0% |
| !! | TAGAATTATTGGTGTTTGAT+AGG | + | chr6_1:95395236-95395255 | Msa0900000:intron | 25.0% |
| ! | ACCAATAATTCTACGAAATT+AGG | - | chr6_1:95395243-95395262 | Msa0899990:intron | 25.0% |
| ! | TCCTAATTTCGTAGAATTAT+TGG | + | chr6_1:95395247-95395266 | Msa0900000:intron | 25.0% |
| ! | GATTTATAGAGTTGAGTTTA+GGG | - | chr6_1:95395313-95395332 | Msa0899990:intron | 25.0% |
| ! | GAACAAAATTTAACTGTCAT+TGG | - | chr6_1:95395604-95395623 | Msa0899990:intron | 25.0% |
| ! | CTAATATAAATTAACCCATC+TGG | - | chr6_1:95396022-95396041 | Msa0899990:intron | 25.0% |
| ! | AAAACTATAGACTATGTGTA+CGG | + | chr6_1:95396219-95396238 | Msa0900000:intron | 25.0% |
| ! | CTAAGAATAATCATTTGAGT+TGG | + | chr6_1:95396491-95396510 | Msa0900000:CDS | 25.0% |
| ! | TTCTTGAATAAACTTTGGAT+CGG | + | chr6_1:95396652-95396671 | Msa0900000:intron | 25.0% |
| !! | TTGATCATGTTTTACTAAGA+GGG | + | chr6_1:95396858-95396877 | Msa0900000:intron | 25.0% |
| !! | TTTGATCATGTTTTACTAAG+AGG | + | chr6_1:95396859-95396878 | Msa0900000:intron | 25.0% |
| ! | GAAAAGGTAACATCAATATT+TGG | - | chr6_1:95396940-95396959 | Msa0899990:intron | 25.0% |
| ! | GAATGAATGATTAAGGAATT+TGG | + | chr6_1:95397277-95397296 | Msa0900000:intron | 25.0% |
| ! | CAATAACAATAGAGAGAATT+TGG | - | chr6_1:95397369-95397388 | Msa0899990:intron | 25.0% |
| ! | TGAATTTGGATTTATGAGAT+TGG | + | chr6_1:95392656-95392675 | None:intergenic | 25.0% |
| !! | TTGAATTTATACCCATGTTT+TGG | + | chr6_1:95397860-95397879 | Msa0900000:intron | 25.0% |
| !!! | CTATTTTTAGTATGACGAAT+CGG | - | chr6_1:95397899-95397918 | Msa0899990:intron | 25.0% |
| ! | ATTATCCTAACATTTGACTA+TGG | - | chr6_1:95398018-95398037 | Msa0899990:intron | 25.0% |
| ! | AAAAACCATAGTCAAATGTT+AGG | + | chr6_1:95398026-95398045 | Msa0900000:intron | 25.0% |
| ! | TTTGATAAGAATTATGGAAG+TGG | - | chr6_1:95398130-95398149 | Msa0899990:intron | 25.0% |
| ! | TTGATAAGAATTATGGAAGT+GGG | - | chr6_1:95398131-95398150 | Msa0899990:intron | 25.0% |
| AATTGCTGGTAATATCAAGA+AGG | - | chr6_1:95392565-95392584 | Msa0899990:CDS | 30.0% | |
| ATTTGGATTTATGAGATTGG+TGG | + | chr6_1:95392653-95392672 | None:intergenic | 30.0% | |
| ! | AAGCTAGAGAAATTTTTACG+AGG | - | chr6_1:95392792-95392811 | Msa0899990:intron | 30.0% |
| ! | AGCTAGAGAAATTTTTACGA+GGG | - | chr6_1:95392793-95392812 | Msa0899990:intron | 30.0% |
| TTTGCAAATGAATTTGGTTG+AGG | - | chr6_1:95392999-95393018 | Msa0899990:intron | 30.0% | |
| GAATATTACGAAGATTCTTG+AGG | + | chr6_1:95393152-95393171 | None:intergenic | 30.0% | |
| ! | ACAATCCTTTGTTTCTCATA+TGG | - | chr6_1:95393230-95393249 | Msa0899990:CDS | 30.0% |
| ! | CAATCCTTTGTTTCTCATAT+GGG | - | chr6_1:95393231-95393250 | Msa0899990:CDS | 30.0% |
| TTCTTAATCTACCTTCTCAT+TGG | - | chr6_1:95393465-95393484 | Msa0899990:intron | 30.0% | |
| GTAAATGGCTCAGAAAATAA+TGG | - | chr6_1:95393649-95393668 | Msa0899990:intron | 30.0% | |
| TTCACTGAAATTGTGCATAT+CGG | - | chr6_1:95393979-95393998 | Msa0899990:intron | 30.0% | |
| ACATACATAAGACACTAGAT+TGG | - | chr6_1:95394019-95394038 | Msa0899990:intron | 30.0% | |
| GACCGATGATGATAAATTTA+AGG | + | chr6_1:95394231-95394250 | None:intergenic | 30.0% | |
| CTAATCTAATCTTCTCAATG+AGG | + | chr6_1:95394769-95394788 | Msa0900000:intron | 30.0% | |
| ACCAACAATGAAAAATCAAG+AGG | - | chr6_1:95394892-95394911 | Msa0899990:intron | 30.0% | |
| ! | TCCTCTTGATTTTTCATTGT+TGG | + | chr6_1:95394896-95394915 | Msa0900000:intron | 30.0% |
| ! | ACATTGATGATATCTGTGAT+AGG | + | chr6_1:95394992-95395011 | Msa0900000:intron | 30.0% |
| AGGAATTGAAAAACCTAAGA+TGG | - | chr6_1:95395133-95395152 | Msa0899990:intron | 30.0% | |
| CATATCATATTGATGCGAAT+TGG | + | chr6_1:95395194-95395213 | Msa0900000:intron | 30.0% | |
| GGATTTATAGAGTTGAGTTT+AGG | - | chr6_1:95395312-95395331 | Msa0899990:intron | 30.0% | |
| ! | GATTTCAAGAGTATAGTAAC+CGG | - | chr6_1:95395387-95395406 | Msa0899990:intron | 30.0% |
| ! | ATTTCAAGAGTATAGTAACC+GGG | - | chr6_1:95395388-95395407 | Msa0899990:intron | 30.0% |
| !!! | CCACTAACGTTTTTTCTTTT+GGG | + | chr6_1:95395424-95395443 | Msa0900000:intron | 30.0% |
| !!! | ACCACTAACGTTTTTTCTTT+TGG | + | chr6_1:95395425-95395444 | Msa0900000:intron | 30.0% |
| AAGAAAAAACGTTAGTGGTA+AGG | - | chr6_1:95395426-95395445 | Msa0899990:intron | 30.0% | |
| AGAAAAAACGTTAGTGGTAA+GGG | - | chr6_1:95395427-95395446 | Msa0899990:intron | 30.0% | |
| ! | TTTTGCTCTGACTTTTAACA+GGG | - | chr6_1:95396109-95396128 | Msa0899990:intron | 30.0% |
| AGATTCATCAGTGTTTGAAT+CGG | - | chr6_1:95396159-95396178 | Msa0899990:intron | 30.0% | |
| TAATTCTATACCATGTGACA+TGG | - | chr6_1:95396372-95396391 | Msa0899990:intron | 30.0% | |
| !! | GAATAATCATTTGAGTTGGA+GGG | + | chr6_1:95396487-95396506 | Msa0900000:intron | 30.0% |
| !! | AGAATAATCATTTGAGTTGG+AGG | + | chr6_1:95396488-95396507 | Msa0900000:intron | 30.0% |
| ! | ACAAAATTGGTTAGAAGTAC+TGG | - | chr6_1:95396674-95396693 | Msa0899990:intron | 30.0% |
| ATCTATCAACTTGTCTAAAG+TGG | + | chr6_1:95396794-95396813 | Msa0900000:intron | 30.0% | |
| TCATAGACAAAAGAATTGAC+CGG | + | chr6_1:95396987-95397006 | Msa0900000:intron | 30.0% | |
| !!! | GTAACCCGAATTTTTTGATA+AGG | + | chr6_1:95397234-95397253 | Msa0900000:intron | 30.0% |
| !!! | AATTGCTGGTTTTATCAAGA+AGG | - | chr6_1:95397550-95397569 | Msa0899990:intron | 30.0% |
| ATTTGGATTTATGAGATTGG+TGG | + | chr6_1:95392653-95392672 | None:intergenic | 30.0% | |
| TGTTGAAATTTCAACGAGTT+CGG | + | chr6_1:95397693-95397712 | Msa0900000:intron | 30.0% | |
| CGATTCGTCATACTAAAAAT+AGG | + | chr6_1:95397901-95397920 | Msa0900000:intron | 30.0% | |
| TAATAGGATGAAGGGTAATT+AGG | - | chr6_1:95397963-95397982 | Msa0899990:intron | 30.0% | |
| AATAGGATGAAGGGTAATTA+GGG | - | chr6_1:95397964-95397983 | Msa0899990:intron | 30.0% | |
| ! | TATGAGTTTGAAGTTTGGTT+TGG | - | chr6_1:95398061-95398080 | Msa0899990:intron | 30.0% |
| CAGGAGTTTGATAAGAATTA+TGG | - | chr6_1:95398124-95398143 | Msa0899990:intron | 30.0% | |
| GAAAAATATATAAAGGTCCC+TGG | + | chr6_1:95398205-95398224 | Msa0900000:intron | 30.0% | |
| GCTTGAATTTGCATCTTCAA+AGG | + | chr6_1:95392491-95392510 | None:intergenic | 35.0% | |
| TGTGATTGTAGATCAATTGC+TGG | - | chr6_1:95392551-95392570 | Msa0899990:CDS | 35.0% | |
| CCATGGATACAAAAGTTTGT+TGG | + | chr6_1:95392727-95392746 | None:intergenic | 35.0% | |
| ! | CCAACAAACTTTTGTATCCA+TGG | - | chr6_1:95392724-95392743 | Msa0899990:intron | 35.0% |
| TAGTATAAACAGGAGATCCA+TGG | + | chr6_1:95392744-95392763 | None:intergenic | 35.0% | |
| ! | GCTAGAGAAATTTTTACGAG+GGG | - | chr6_1:95392794-95392813 | Msa0899990:intron | 35.0% |
| ! | CTAGAGAAATTTTTACGAGG+GGG | - | chr6_1:95392795-95392814 | Msa0899990:intron | 35.0% |
| GTAACCCATATGAGAAACAA+AGG | + | chr6_1:95393238-95393257 | None:intergenic | 35.0% | |
| ATAACGAATAGAATGACCAG+AGG | + | chr6_1:95393264-95393283 | None:intergenic | 35.0% | |
| ! | TCACCTTTTACTTTAGGCTT+TGG | - | chr6_1:95393517-95393536 | Msa0899990:intron | 35.0% |
| CATCCAAAGCCTAAAGTAAA+AGG | + | chr6_1:95393523-95393542 | None:intergenic | 35.0% | |
| TTGGCATTAACATCCAAAGA+AGG | - | chr6_1:95393835-95393854 | Msa0899990:intron | 35.0% | |
| CGTTATAATCTAGTGGCTTA+TGG | + | chr6_1:95394084-95394103 | None:intergenic | 35.0% | |
| !!! | TATGCTGTTTTATCCTTCCT+TGG | + | chr6_1:95394497-95394516 | Msa0900000:intron | 35.0% |
| TGTCTGTGATGATATCTTGA+AGG | + | chr6_1:95394584-95394603 | Msa0900000:intron | 35.0% | |
| AATCAAGAGGACTCAGAATA+TGG | - | chr6_1:95394905-95394924 | Msa0899990:intron | 35.0% | |
| ATCAAGAGGACTCAGAATAT+GGG | - | chr6_1:95394906-95394925 | Msa0899990:intron | 35.0% | |
| TGGTGATATAACAGAATGGT+CGG | - | chr6_1:95394929-95394948 | Msa0899990:intron | 35.0% | |
| CCCAAAAGAAAAAACGTTAG+TGG | - | chr6_1:95395421-95395440 | Msa0899990:intron | 35.0% | |
| ATAAATTAACCCATCTGGGT+TGG | - | chr6_1:95396027-95396046 | Msa0899990:intron | 35.0% | |
| ! | GTTTTGCTCTGACTTTTAAC+AGG | - | chr6_1:95396108-95396127 | Msa0899990:intron | 35.0% |
| ! | TTTGCTCTGACTTTTAACAG+GGG | - | chr6_1:95396110-95396129 | Msa0899990:intron | 35.0% |
| !! | CATAGTCTATAGTTTTGCCT+TGG | - | chr6_1:95396223-95396242 | Msa0899990:intron | 35.0% |
| !! | CAAATAAGATTAGCTCTAGC+AGG | + | chr6_1:95396287-95396306 | Msa0900000:intron | 35.0% |
| TCTGCTTAACCCACTAAAAA+TGG | - | chr6_1:95396734-95396753 | Msa0899990:intron | 35.0% | |
| !!! | CTCATCGTTCCATTTTTAGT+GGG | + | chr6_1:95396746-95396765 | Msa0900000:intron | 35.0% |
| !! | TCTCATCGTTCCATTTTTAG+TGG | + | chr6_1:95396747-95396766 | Msa0900000:intron | 35.0% |
| ACTTGTACCAGGATAAGAAA+AGG | - | chr6_1:95396924-95396943 | Msa0899990:intron | 35.0% | |
| ! | GATGTTACCTTTTCTTATCC+TGG | + | chr6_1:95396934-95396953 | Msa0900000:intron | 35.0% |
| CATAGACAAAAGAATTGACC+GGG | + | chr6_1:95396986-95397005 | Msa0900000:intron | 35.0% | |
| !!! | TTATTTTGACCAGTGGAGAA+AGG | + | chr6_1:95397094-95397113 | Msa0900000:intron | 35.0% |
| TTAAGGAATTTGGCAGCTTA+TGG | + | chr6_1:95397267-95397286 | Msa0900000:intron | 35.0% | |
| GCTTGAATTTGCATCTTCAA+AGG | + | chr6_1:95392491-95392510 | None:intergenic | 35.0% | |
| TGTGATTGTAGATCAATTGC+TGG | - | chr6_1:95392551-95392570 | Msa0899990:CDS | 35.0% | |
| TAGCAAAGTTGAATTTGAGC+TGG | + | chr6_1:95397799-95397818 | Msa0900000:intron | 35.0% | |
| AGGGTAATTAGGGAAATTCA+TGG | - | chr6_1:95397974-95397993 | Msa0899990:intron | 35.0% | |
| ! | AGGGAAATTCATGGTTTTTG+TGG | - | chr6_1:95397983-95398002 | Msa0899990:intron | 35.0% |
| ! | ATTCATGGTTTTTGTGGTGT+AGG | - | chr6_1:95397989-95398008 | Msa0899990:intron | 35.0% |
| !!! | AGGTTGTGTTTGGTTTTTTC+AGG | - | chr6_1:95398105-95398124 | Msa0899990:intron | 35.0% |
| ATAAGAATTATGGAAGTGGG+TGG | - | chr6_1:95398134-95398153 | Msa0899990:CDS | 35.0% | |
| ! | TGTGTAGTAGGTTCCAATTT+TGG | - | chr6_1:95398160-95398179 | Msa0899990:CDS | 35.0% |
| ! | GTGTAGTAGGTTCCAATTTT+GGG | - | chr6_1:95398161-95398180 | Msa0899990:CDS | 35.0% |
| !! | GCTAAAAAAGCACCCAAAAT+TGG | + | chr6_1:95398176-95398195 | Msa0900000:intron | 35.0% |
| AGCTTGAGAAGCAAATGACA+TGG | + | chr6_1:95392513-95392532 | None:intergenic | 40.0% | |
| GTACATTTCTTTGTGGACAG+CGG | - | chr6_1:95392767-95392786 | Msa0899990:intron | 40.0% | |
| ! | TCATATGGGTTACAAACCTC+TGG | - | chr6_1:95393245-95393264 | Msa0899990:CDS | 40.0% |
| AATTAGACCTCAGACATCCA+AGG | - | chr6_1:95394123-95394142 | Msa0899990:intron | 40.0% | |
| AATGCTGCTATATCCTTCCT+TGG | + | chr6_1:95394143-95394162 | None:intergenic | 40.0% | |
| GTTTCTCAAAACATTCGCAG+TGG | + | chr6_1:95394205-95394224 | None:intergenic | 40.0% | |
| GTTTCTCAAAACATTCGCAG+TGG | + | chr6_1:95394205-95394224 | None:intergenic | 40.0% | |
| TGGGTGGTGATATAACAGAA+TGG | - | chr6_1:95394925-95394944 | Msa0899990:intron | 40.0% | |
| ATATAACAGAATGGTCGGCA+AGG | - | chr6_1:95394934-95394953 | Msa0899990:intron | 40.0% | |
| TGAGTGAATTTGTGAAGGTG+AGG | - | chr6_1:95395285-95395304 | Msa0899990:intron | 40.0% | |
| GAGTGAATTTGTGAAGGTGA+GGG | - | chr6_1:95395286-95395305 | Msa0899990:intron | 40.0% | |
| AATTTGTGAAGGTGAGGGTT+AGG | - | chr6_1:95395291-95395310 | Msa0899990:intron | 40.0% | |
| ! | TATAGTAACCGGGTTGAGTT+TGG | - | chr6_1:95395398-95395417 | Msa0899990:intron | 40.0% |
| GTAAGGGCTTTCTCATATGT+GGG | - | chr6_1:95395443-95395462 | Msa0899990:intron | 40.0% | |
| GAACAGCGTTTAACTGTCAT+TGG | + | chr6_1:95395560-95395579 | Msa0900000:intron | 40.0% | |
| ATTACTAGTCCAACCCAGAT+GGG | + | chr6_1:95396039-95396058 | Msa0900000:intron | 40.0% | |
| AATTACTAGTCCAACCCAGA+TGG | + | chr6_1:95396040-95396059 | Msa0900000:intron | 40.0% | |
| !! | GTCTATAGTTTTGCCTTGGT+TGG | - | chr6_1:95396227-95396246 | Msa0899990:intron | 40.0% |
| CTCTAACACCTGAGTTCTTA+AGG | + | chr6_1:95396254-95396273 | Msa0900000:intron | 40.0% | |
| !! | ATAAGATTAGCTCTAGCAGG+AGG | + | chr6_1:95396284-95396303 | Msa0900000:intron | 40.0% |
| CAGATCAACTTGAGTGGTAA+TGG | + | chr6_1:95396713-95396732 | Msa0900000:intron | 40.0% | |
| GTGGAAAGAGCAAACTAGAT+AGG | + | chr6_1:95396775-95396794 | Msa0900000:intron | 40.0% | |
| TCCAAATTCACACTTGTACC+AGG | - | chr6_1:95396913-95396932 | Msa0899990:intron | 40.0% | |
| TCCTGGTACAAGTGTGAATT+TGG | + | chr6_1:95396917-95396936 | Msa0900000:intron | 40.0% | |
| TACCATAATCCTTTCTCCAC+TGG | - | chr6_1:95397082-95397101 | Msa0899990:intron | 40.0% | |
| !!! | CATGGTCTTATTTTGACCAG+TGG | + | chr6_1:95397101-95397120 | Msa0900000:intron | 40.0% |
| TTTCTCTTCAAAGTGGAGCA+TGG | + | chr6_1:95397119-95397138 | Msa0900000:intron | 40.0% | |
| AAGAGAGCAACTCAAGATGT+TGG | - | chr6_1:95397418-95397437 | Msa0899990:intron | 40.0% | |
| AGCTTGAGAAGCAAATGACA+TGG | + | chr6_1:95392513-95392532 | None:intergenic | 40.0% | |
| !!! | TGCTTTTTTAGCCATACACC+AGG | - | chr6_1:95398184-95398203 | Msa0899990:CDS | 40.0% |
| !!! | GCTTTTTTAGCCATACACCA+GGG | - | chr6_1:95398185-95398204 | Msa0899990:CDS | 40.0% |
| ATATAAAGGTCCCTGGTGTA+TGG | + | chr6_1:95398198-95398217 | Msa0900000:intron | 40.0% | |
| TGTTGGAATCTCAGCGAGTT+CGG | + | chr6_1:95392710-95392729 | None:intergenic | 45.0% | |
| TTGAAAGGATGGGGTAGCTT+TGG | + | chr6_1:95393104-95393123 | None:intergenic | 45.0% | |
| AAGCTACCCCATCCTTTCAA+AGG | - | chr6_1:95393104-95393123 | Msa0899990:intron | 45.0% | |
| AGCTACCCCATCCTTTCAAA+GGG | - | chr6_1:95393105-95393124 | Msa0899990:intron | 45.0% | |
| ! | CGATTCCCTTTGAAAGGATG+GGG | + | chr6_1:95393113-95393132 | None:intergenic | 45.0% |
| ! | GCGATTCCCTTTGAAAGGAT+GGG | + | chr6_1:95393114-95393133 | None:intergenic | 45.0% |
| ! | TCTTGAGGTGTCCACAAACA+GGG | + | chr6_1:95393137-95393156 | None:intergenic | 45.0% |
| ! | TTCTTGAGGTGTCCACAAAC+AGG | + | chr6_1:95393138-95393157 | None:intergenic | 45.0% |
| GACATACTTTCTTCAGCACC+AGG | + | chr6_1:95393367-95393386 | None:intergenic | 45.0% | |
| ATCTACCTTCTCATTGGCGT+TGG | - | chr6_1:95393471-95393490 | Msa0899990:intron | 45.0% | |
| AAACACCAACGCCAATGAGA+AGG | + | chr6_1:95393479-95393498 | None:intergenic | 45.0% | |
| ! | TCAGCACTGAAACATCAGAG+TGG | - | chr6_1:95393686-95393705 | Msa0899990:intron | 45.0% |
| ! | ACATCATTAGCTCTCAAGCC+TGG | - | chr6_1:95393864-95393883 | Msa0899990:intron | 45.0% |
| TATCCTTCCTTGGATGTCTG+AGG | + | chr6_1:95394133-95394152 | None:intergenic | 45.0% | |
| ATCGTTGTCTCAGACATCCA+AGG | - | chr6_1:95394477-95394496 | Msa0899990:intron | 45.0% | |
| TTGTCTCAGACATCCAAGGA+AGG | - | chr6_1:95394481-95394500 | Msa0899990:intron | 45.0% | |
| ACAGCATAAACTCTCAAGCC+TGG | - | chr6_1:95394509-95394528 | Msa0899990:intron | 45.0% | |
| AAGAGGACTCAGAATATGGG+TGG | - | chr6_1:95394909-95394928 | Msa0899990:intron | 45.0% | |
| ATAGGTCTCGTTCGTCGTAA+TGG | + | chr6_1:95394974-95394993 | Msa0900000:intron | 45.0% | |
| GCAGCTGAGTGAATTTGTGA+AGG | - | chr6_1:95395280-95395299 | Msa0899990:intron | 45.0% | |
| CATACGCGTAGGTTAATTCG+CGG | + | chr6_1:95395367-95395386 | Msa0900000:intron | 45.0% | |
| CTCTTGAAATCCATACGCGT+AGG | + | chr6_1:95395378-95395397 | Msa0900000:intron | 45.0% | |
| GGTAAGGGCTTTCTCATATG+TGG | - | chr6_1:95395442-95395461 | Msa0899990:intron | 45.0% | |
| GAGTTCTTAAGGACCAACCA+AGG | + | chr6_1:95396243-95396262 | Msa0900000:intron | 45.0% | |
| ! | TGGTTGGTCCTTAAGAACTC+AGG | - | chr6_1:95396243-95396262 | Msa0899990:intron | 45.0% |
| GCAGATCAGATCAACTTGAG+TGG | + | chr6_1:95396719-95396738 | Msa0900000:intron | 45.0% | |
| AAAAGAATTGACCGGGTGGT+TGG | + | chr6_1:95396979-95396998 | Msa0900000:intron | 45.0% | |
| AGACAAAAGAATTGACCGGG+TGG | + | chr6_1:95396983-95397002 | Msa0900000:intron | 45.0% | |
| GACCAGTGGAGAAAGGATTA+TGG | + | chr6_1:95397087-95397106 | Msa0900000:intron | 45.0% | |
| GAGCAACTCAAGATGTTGGA+AGG | - | chr6_1:95397422-95397441 | Msa0899990:intron | 45.0% | |
| GTATGACGAATCGGAAGTCA+TGG | - | chr6_1:95397908-95397927 | Msa0899990:intron | 45.0% | |
| !!! | TCAATAAAAATAAAAATTTT+GGG | - | chr6_1:95393074-95393093 | Msa0899990:intron | 5.0% |
| !!! | AAAGTTAATTAAAATTTTAT+TGG | + | chr6_1:95393741-95393760 | None:intergenic | 5.0% |
| !!! | ATTTTAAATATTATAATCAT+TGG | - | chr6_1:95394822-95394841 | Msa0899990:intron | 5.0% |
| !!! | TTTTTTAAAGATTTTAAATT+CGG | + | chr6_1:95396188-95396207 | Msa0900000:intron | 5.0% |
| ! | GGCGATTCCCTTTGAAAGGA+TGG | + | chr6_1:95393115-95393134 | None:intergenic | 50.0% |
| ! | CTTGAGGTGTCCACAAACAG+GGG | + | chr6_1:95393136-95393155 | None:intergenic | 50.0% |
| ! | TTAGCTCTCAAGCCTGGCAA+AGG | - | chr6_1:95393870-95393889 | Msa0899990:intron | 50.0% |
| CATTTGCCTTTGCCTTTGCC+AGG | + | chr6_1:95393885-95393904 | None:intergenic | 50.0% | |
| AGACCTCAGACATCCAAGGA+AGG | - | chr6_1:95394127-95394146 | Msa0899990:intron | 50.0% | |
| GCAGCATTAACTCTCAAGCC+TGG | - | chr6_1:95394155-95394174 | Msa0899990:intron | 50.0% | |
| TAACTCTCAAGCCTGGCGAA+AGG | - | chr6_1:95394162-95394181 | Msa0899990:intron | 50.0% | |
| AAGAACTTTCGCCTTTCGCC+AGG | + | chr6_1:95394176-95394195 | None:intergenic | 50.0% | |
| TGGCGAAAGGCGAAAGTTCT+TGG | - | chr6_1:95394175-95394194 | Msa0899990:intron | 50.0% | |
| GGCGAAAGGCGAAAGTTCTT+GGG | - | chr6_1:95394176-95394195 | Msa0899990:intron | 50.0% | |
| GAAAGGCGAAAGTTCTTGGG+CGG | - | chr6_1:95394179-95394198 | Msa0899990:intron | 50.0% | |
| TAAACTCTCAAGCCTGGCGA+AGG | - | chr6_1:95394515-95394534 | Msa0899990:intron | 50.0% | |
| TAAGAACTTTCGCCTTCGCC+AGG | + | chr6_1:95394530-95394549 | Msa0900000:intron | 50.0% | |
| TGGCGAAGGCGAAAGTTCTT+AGG | - | chr6_1:95394529-95394548 | Msa0899990:intron | 50.0% | |
| CGAAGGCGAAAGTTCTTAGG+CGG | - | chr6_1:95394532-95394551 | Msa0899990:intron | 50.0% | |
| TTAATTCGCGGCGCAACTCT+TGG | + | chr6_1:95395355-95395374 | Msa0900000:intron | 50.0% | |
| CGCGAATTAACCTACGCGTA+TGG | - | chr6_1:95395365-95395384 | Msa0899990:intron | 50.0% | |
| ! | CTTTTGGGCCAAACTCAACC+CGG | + | chr6_1:95395409-95395428 | Msa0900000:intron | 50.0% |
| ! | TGACTTTTAACAGGGGCCCT+GGG | - | chr6_1:95396117-95396136 | Msa0899990:intron | 50.0% |
| TCAGTCAATCCTACAGCCCA+GGG | + | chr6_1:95396136-95396155 | Msa0900000:intron | 50.0% | |
| ATCAGTCAATCCTACAGCCC+AGG | + | chr6_1:95396137-95396156 | Msa0900000:intron | 50.0% | |
| CGTACTCGAGTTCGATTACG+AGG | + | chr6_1:95396892-95396911 | Msa0900000:intron | 50.0% | |
| AGTGGGTGGCAATGTGTAGT+AGG | - | chr6_1:95398148-95398167 | Msa0899990:CDS | 50.0% | |
| CAGGGGCGATTCCCTTTGAA+AGG | + | chr6_1:95393119-95393138 | None:intergenic | 55.0% | |
| AAGGGAATCGCCCCTGTTTG+TGG | - | chr6_1:95393123-95393142 | Msa0899990:intron | 55.0% | |
| CTCAAGCCTGGCAAAGGCAA+AGG | - | chr6_1:95393876-95393895 | Msa0899990:intron | 55.0% | |
| ! | CTGACTTTTAACAGGGGCCC+TGG | - | chr6_1:95396116-95396135 | Msa0899990:intron | 55.0% |
| ATGTGACATGGCCTCGCGAA+GGG | - | chr6_1:95396384-95396403 | Msa0899990:intron | 55.0% | |
| CTTCGCGAGGCCATGTCACA+TGG | + | chr6_1:95396385-95396404 | Msa0900000:intron | 60.0% | |
| CATGTGACATGGCCTCGCGA+AGG | - | chr6_1:95396383-95396402 | Msa0899990:intron | 60.0% | |
| GATCCTCTGATCCCTTCGCG+AGG | + | chr6_1:95396398-95396417 | Msa0900000:intron | 60.0% | |
| GCGCTAAGCTTCCAACCACC+CGG | - | chr6_1:95396965-95396984 | Msa0899990:intron | 60.0% | |
| TAACAGGGGCCCTGGGCTGT+AGG | - | chr6_1:95396124-95396143 | Msa0899990:intron | 65.0% | |
| TGGCCTCGCGAAGGGATCAG+AGG | - | chr6_1:95396392-95396411 | Msa0899990:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 95392449 | 95398270 | 95392449 | ID=Msa0899990;Name=Msa0899990 |
| chr6_1 | mRNA | 95392449 | 95398270 | 95392449 | ID=Msa0899990-mRNA-1;Parent=Msa0899990;Name=Msa0899990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|0.5|1|3|0|139 |
| chr6_1 | exon | 95398133 | 95398270 | 95398133 | ID=Msa0899990-mRNA-1:exon:16480;Parent=Msa0899990-mRNA-1 |
| chr6_1 | exon | 95393148 | 95393285 | 95393148 | ID=Msa0899990-mRNA-1:exon:16479;Parent=Msa0899990-mRNA-1 |
| chr6_1 | exon | 95392449 | 95392592 | 95392449 | ID=Msa0899990-mRNA-1:exon:16478;Parent=Msa0899990-mRNA-1 |
| chr6_1 | CDS | 95398133 | 95398270 | 95398133 | ID=Msa0899990-mRNA-1:cds;Parent=Msa0899990-mRNA-1 |
| chr6_1 | CDS | 95393148 | 95393285 | 95393148 | ID=Msa0899990-mRNA-1:cds;Parent=Msa0899990-mRNA-1 |
| chr6_1 | CDS | 95392449 | 95392592 | 95392449 | ID=Msa0899990-mRNA-1:cds;Parent=Msa0899990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
