Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001990 | XP_003620614.2 | 93.617 | 94 | 6 | 0 | 46 | 139 | 34 | 127 | 5.08e-60 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001990 | sp|O02414|DYL1_HELCR | 44.444 | 90 | 48 | 1 | 47 | 136 | 1 | 88 | 7.15e-21 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001990 | A0A396HHX3 | 93.617 | 94 | 6 | 0 | 46 | 139 | 34 | 127 | 2.43e-60 | 191 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015140 | Msa1001990 | 0.824335 | 8.532486e-54 | -8.615850e-47 |
| Msa0042550 | Msa1001990 | 0.806022 | 1.006533e-49 | -8.615850e-47 |
| Msa0043500 | Msa1001990 | 0.816404 | 5.626502e-52 | -8.615850e-47 |
| Msa0043650 | Msa1001990 | 0.803315 | 3.696679e-49 | -8.615850e-47 |
| Msa0100160 | Msa1001990 | 0.801524 | 8.646183e-49 | -8.615850e-47 |
| Msa0106620 | Msa1001990 | 0.800944 | 1.136422e-48 | -8.615850e-47 |
| Msa0712560 | Msa1001990 | 0.804265 | 2.347634e-49 | -8.615850e-47 |
| Msa0750250 | Msa1001990 | 0.800048 | 1.730133e-48 | -8.615850e-47 |
| Msa0178510 | Msa1001990 | 0.810943 | 8.962479e-51 | -8.615850e-47 |
| Msa0192640 | Msa1001990 | 0.801960 | 7.037252e-49 | -8.615850e-47 |
| Msa0205010 | Msa1001990 | 0.800025 | 1.748931e-48 | -8.615850e-47 |
| Msa0394690 | Msa1001990 | 0.809403 | 1.925235e-50 | -8.615850e-47 |
| Msa0468320 | Msa1001990 | 0.800956 | 1.130023e-48 | -8.615850e-47 |
| Msa0473330 | Msa1001990 | 0.806179 | 9.325810e-50 | -8.615850e-47 |
| Msa0999860 | Msa1001990 | 0.992319 | 1.390336e-192 | -8.615850e-47 |
| Msa1001990 | Msa1121260 | 0.804362 | 2.240534e-49 | -8.615850e-47 |
| Msa1001990 | Msa1129690 | 0.805188 | 1.505759e-49 | -8.615850e-47 |
| Msa1001990 | Msa1158660 | 0.803396 | 3.555991e-49 | -8.615850e-47 |
| Msa1001990 | Msa1163540 | 0.822347 | 2.486945e-53 | -8.615850e-47 |
| Msa1001990 | Msa1286550 | 0.814009 | 1.915956e-51 | -8.615850e-47 |
| Msa1001990 | Msa1357080 | 0.802791 | 4.744443e-49 | -8.615850e-47 |
| Msa1001990 | Msa1359560 | 0.810183 | 1.308244e-50 | -8.615850e-47 |
| Msa1001990 | Msa1381480 | 0.815530 | 8.820767e-52 | -8.615850e-47 |
| Msa1001990 | Msa1388960 | 0.965831 | 4.068580e-125 | -8.615850e-47 |
| Msa1001990 | Msa1407190 | 0.807736 | 4.369042e-50 | -8.615850e-47 |
| Msa1001990 | Msa1416370 | 0.806229 | 9.105686e-50 | -8.615850e-47 |
| Msa1001990 | Msa1432130 | 0.804619 | 1.980097e-49 | -8.615850e-47 |
| Msa0518440 | Msa1001990 | 0.803847 | 2.867119e-49 | -8.615850e-47 |
| Msa0521670 | Msa1001990 | 0.813985 | 1.939456e-51 | -8.615850e-47 |
| Msa0532980 | Msa1001990 | 0.802904 | 4.495475e-49 | -8.615850e-47 |
| Msa0583500 | Msa1001990 | 0.805889 | 1.073484e-49 | -8.615850e-47 |
| Msa0866400 | Msa1001990 | 0.811215 | 7.825490e-51 | -8.615850e-47 |
| Msa0899990 | Msa1001990 | 0.946684 | 2.881853e-105 | -8.615850e-47 |
| Msa0965370 | Msa1001990 | 0.943134 | 2.079440e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001990 | MtrunA17_Chr6g0485891 | 93.617 | 94 | 6 | 0 | 46 | 139 | 34 | 127 | 4.67e-64 | 191 |
| Msa1001990 | MtrunA17_Chr2g0331651 | 74.444 | 90 | 23 | 0 | 47 | 136 | 1 | 90 | 9.27e-50 | 154 |
| Msa1001990 | MtrunA17_Chr8g0360861 | 51.087 | 92 | 45 | 0 | 47 | 138 | 1 | 92 | 4.46e-30 | 104 |
| Msa1001990 | MtrunA17_Chr4g0063491 | 45.570 | 79 | 43 | 0 | 57 | 135 | 159 | 237 | 1.15e-19 | 81.6 |
| Msa1001990 | MtrunA17_Chr4g0059791 | 44.444 | 81 | 44 | 1 | 58 | 137 | 222 | 302 | 1.06e-16 | 74.7 |
| Msa1001990 | MtrunA17_Chr8g0391451 | 36.905 | 84 | 51 | 1 | 54 | 135 | 56 | 139 | 2.69e-16 | 70.9 |
| Msa1001990 | MtrunA17_Chr4g0067531 | 36.471 | 85 | 52 | 1 | 51 | 135 | 46 | 128 | 3.01e-16 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001990 | AT1G52245.1 | 76.344 | 93 | 22 | 0 | 47 | 139 | 1 | 93 | 9.47e-52 | 159 |
| Msa1001990 | AT3G16120.2 | 72.826 | 92 | 25 | 0 | 47 | 138 | 1 | 92 | 3.47e-47 | 148 |
| Msa1001990 | AT3G16120.1 | 72.826 | 92 | 25 | 0 | 47 | 138 | 1 | 92 | 3.47e-47 | 148 |
| Msa1001990 | AT4G27360.1 | 53.846 | 91 | 42 | 0 | 47 | 137 | 1 | 91 | 1.26e-31 | 108 |
| Msa1001990 | AT5G20110.1 | 46.154 | 78 | 42 | 0 | 58 | 135 | 123 | 200 | 3.12e-18 | 77.4 |
| Msa1001990 | AT4G15930.1 | 38.824 | 85 | 50 | 1 | 51 | 135 | 39 | 121 | 1.93e-17 | 73.6 |
| Msa1001990 | AT1G23220.1 | 36.471 | 85 | 53 | 1 | 54 | 137 | 38 | 122 | 2.68e-17 | 73.2 |
Find 23 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTATAGATTAGAAAATTA+AGG | 0.208962 | 6_4:-86436543 | None:intergenic |
| CAGGAGTTTGATAAGAATTA+TGG | 0.245035 | 6_4:+86436433 | Msa1001990:intron |
| TGTGTAGTAGGTTCCAATTT+TGG | 0.285821 | 6_4:+86436469 | Msa1001990:CDS |
| CTTATAGATTAGAAAATTAA+GGG | 0.370499 | 6_4:-86436542 | None:intergenic |
| TGTGATTGTAGATCAATTGC+TGG | 0.417111 | 6_4:+86435845 | Msa1001990:CDS |
| TGTGATTGTAGATCAATTGC+TGG | 0.453871 | 6_4:+86430861 | Msa1001990:CDS |
| TTGATAAGAATTATGGAAGT+GGG | 0.454204 | 6_4:+86436440 | Msa1001990:CDS |
| ATATAAAGGTCCCTGGTGTA+TGG | 0.455885 | 6_4:-86436504 | None:intergenic |
| CTAAAGATGTTGGAAGGAAA+AGG | 0.470654 | 6_4:+86430753 | None:intergenic |
| CTCAAGATGTTGGAAGGAAA+AGG | 0.486434 | 6_4:+86435737 | Msa1001990:intron |
| TTTGATAAGAATTATGGAAG+TGG | 0.490477 | 6_4:+86436439 | Msa1001990:CDS |
| AGTGGGTGGCAATGTGTAGT+AGG | 0.509524 | 6_4:+86436457 | Msa1001990:CDS |
| GCTTGAATTTGCATCTTCAA+AGG | 0.513495 | 6_4:-86430798 | None:intergenic |
| GCTTGAATTTGCATCTTCAA+AGG | 0.513495 | 6_4:-86435782 | None:intergenic |
| GAGCAACTCAAGATGTTGGA+AGG | 0.579416 | 6_4:+86435731 | Msa1001990:intron |
| AAGCAACTAAAGATGTTGGA+AGG | 0.603964 | 6_4:+86430747 | None:intergenic |
| AATTGCTGGTAATATCAAGA+AGG | 0.615321 | 6_4:+86430875 | Msa1001990:CDS |
| ATAAGAATTATGGAAGTGGG+TGG | 0.626217 | 6_4:+86436443 | Msa1001990:CDS |
| AGCTTGAGAAGCAAATGACA+TGG | 0.664039 | 6_4:-86430820 | None:intergenic |
| AGCTTGAGAAGCAAATGACA+TGG | 0.664039 | 6_4:-86435804 | None:intergenic |
| GCTCAAGGAGAACAATCAAG+AGG | 0.668274 | 6_4:-86436572 | None:intergenic |
| GATGTTGGAAGGAAAAGGTG+TGG | 0.730714 | 6_4:+86430758 | None:intergenic |
| GATGTTGGAAGGAAAAGGTG+TGG | 0.758385 | 6_4:+86435742 | Msa1001990:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTATTTTTTATTTAAT+AGG | + | chr6_4:86436256-86436275 | Msa1001990:intron | 0.0% |
| !! | AATAATTAGCATAAATTAAA+AGG | - | chr6_4:86431291-86431310 | None:intergenic | 10.0% |
| !!! | GTCAATAAAAATAAAAATTT+TGG | + | chr6_4:86431383-86431402 | Msa1001990:intron | 10.0% |
| !!! | CAATAAAAATAAAAATTTTG+GGG | + | chr6_4:86431385-86431404 | Msa1001990:intron | 10.0% |
| !! | TTTATATTAGCATATAAAAT+TGG | - | chr6_4:86434321-86434340 | None:intergenic | 10.0% |
| !! | TATGTGAAAAAAAATAAAAA+TGG | - | chr6_4:86434660-86434679 | None:intergenic | 10.0% |
| !! | GTTTATAAATACAAATAAAA+TGG | - | chr6_4:86434762-86434781 | None:intergenic | 10.0% |
| !! | TTCCAATTAATAATTAAATA+AGG | + | chr6_4:86436394-86436413 | Msa1001990:intron | 10.0% |
| !!! | AACCTTATTTAATTATTAAT+TGG | - | chr6_4:86436399-86436418 | None:intergenic | 10.0% |
| !! | TGAAAATATTAGAATGAATT+TGG | - | chr6_4:86430980-86430999 | None:intergenic | 15.0% |
| !! | CTAAACAAATTATTTGTATT+TGG | - | chr6_4:86431131-86431150 | None:intergenic | 15.0% |
| !!! | CAAATACAAATAATTTGTTT+AGG | + | chr6_4:86431129-86431148 | Msa1001990:intron | 15.0% |
| !! | TAATTATTTGCAAATGAATT+TGG | + | chr6_4:86431303-86431322 | Msa1001990:intron | 15.0% |
| !! | GTAGCTAAAAAAATATTATT+GGG | + | chr6_4:86431331-86431350 | Msa1001990:intron | 15.0% |
| !! | TAGCTAAAAAAATATTATTG+GGG | + | chr6_4:86431332-86431351 | Msa1001990:intron | 15.0% |
| !!! | TTTATTTTTATTGACTCATT+AGG | - | chr6_4:86431378-86431397 | None:intergenic | 15.0% |
| !! | ATTAAACTATATCATATCTA+AGG | + | chr6_4:86432966-86432985 | Msa1001990:intron | 15.0% |
| !! | GTGAAAAATTGTAATATATT+TGG | + | chr6_4:86433053-86433072 | Msa1001990:intron | 15.0% |
| !! | TGAAAAAAAATAAAAATGGT+TGG | - | chr6_4:86434656-86434675 | None:intergenic | 15.0% |
| !! | TTATTCAAGAATAACAAAAT+TGG | + | chr6_4:86434970-86434989 | Msa1001990:intron | 15.0% |
| !! | TATATCCTTATCAAAAAATT+CGG | + | chr6_4:86435535-86435554 | Msa1001990:intron | 15.0% |
| !! | AATATTTAAATTGAACTTTG+CGG | - | chr6_4:86436146-86436165 | None:intergenic | 15.0% |
| !! | AATTTAAATATTCCAAAACA+TGG | + | chr6_4:86436154-86436173 | Msa1001990:intron | 15.0% |
| !! | ATTTAAATATTCCAAAACAT+GGG | + | chr6_4:86436155-86436174 | Msa1001990:intron | 15.0% |
| !!! | TTTTTTATTTAATAGGATGA+AGG | + | chr6_4:86436263-86436282 | Msa1001990:intron | 15.0% |
| !!! | TTTTTATTTAATAGGATGAA+GGG | + | chr6_4:86436264-86436283 | Msa1001990:intron | 15.0% |
| !! | CTTATAGATTAGAAAATTAA+GGG | - | chr6_4:86436545-86436564 | None:intergenic | 15.0% |
| !!! | CTTAATTTTCTAATCTATAA+GGG | + | chr6_4:86436544-86436563 | Msa1001990:CDS | 15.0% |
| !!! | GAAAATCACTCAATTTTTTT+GGG | - | chr6_4:86430941-86430960 | None:intergenic | 20.0% |
| !! | AATGTACAATTAGTATAAAC+AGG | - | chr6_4:86431064-86431083 | None:intergenic | 20.0% |
| !! | GGTAGCTAAAAAAATATTAT+TGG | + | chr6_4:86431330-86431349 | Msa1001990:intron | 20.0% |
| !!! | TTTAACTAATAATTTTGTCC+TGG | + | chr6_4:86431656-86431675 | Msa1001990:intron | 20.0% |
| !! | ATTTGAATAGAATGGATAAA+TGG | + | chr6_4:86431718-86431737 | Msa1001990:intron | 20.0% |
| !!! | TTCATGTTTTACTTGAATTT+GGG | - | chr6_4:86431908-86431927 | None:intergenic | 20.0% |
| !!! | TTTCATGTTTTACTTGAATT+TGG | - | chr6_4:86431909-86431928 | None:intergenic | 20.0% |
| !! | AGTAGATAATGAAAAGTAAA+TGG | + | chr6_4:86431944-86431963 | Msa1001990:intron | 20.0% |
| !! | TATTATTCGTTATAATCTAG+TGG | - | chr6_4:86432401-86432420 | None:intergenic | 20.0% |
| !! | TGAATAAAAATCTTTGTCAT+TGG | - | chr6_4:86432723-86432742 | None:intergenic | 20.0% |
| !!! | TGATTGAAGTTTGTATATTT+TGG | - | chr6_4:86433158-86433177 | None:intergenic | 20.0% |
| !!! | TTTTTAACTGAAACATGAAT+TGG | - | chr6_4:86433325-86433344 | None:intergenic | 20.0% |
| !! | AAGCTGAAAATAAACTATAA+AGG | + | chr6_4:86433410-86433429 | Msa1001990:intron | 20.0% |
| !!! | CCACAAATTATATTTTTTAG+AGG | - | chr6_4:86434083-86434102 | None:intergenic | 20.0% |
| !!! | CCTCTAAAAAATATAATTTG+TGG | + | chr6_4:86434080-86434099 | Msa1001990:intron | 20.0% |
| !! | TGCTTATGAAAAATAATTGA+AGG | + | chr6_4:86434193-86434212 | Msa1001990:intron | 20.0% |
| !!! | GAAACTAAAAACTTTTTTAG+AGG | + | chr6_4:86434273-86434292 | Msa1001990:intron | 20.0% |
| !! | TAATATAAATTAACCCATCT+GGG | + | chr6_4:86434332-86434351 | Msa1001990:intron | 20.0% |
| !!! | TAGTAATTGACTTAAGATTT+TGG | + | chr6_4:86434361-86434380 | Msa1001990:intron | 20.0% |
| !!! | GATTCATGACTATATTTTAA+TGG | + | chr6_4:86434734-86434753 | Msa1001990:intron | 20.0% |
| !!! | TTTGAAAAGGTATGTAATAA+GGG | - | chr6_4:86434864-86434883 | None:intergenic | 20.0% |
| !!! | TTTTGAAAAGGTATGTAATA+AGG | - | chr6_4:86434865-86434884 | None:intergenic | 20.0% |
| !!! | ATCACACTAAAATTTTGAAA+AGG | - | chr6_4:86434877-86434896 | None:intergenic | 20.0% |
| !! | TGTTATTCTTGAATAAACTT+TGG | - | chr6_4:86434966-86434985 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTCTCTTCAAAG+TGG | - | chr6_4:86435435-86435454 | None:intergenic | 20.0% |
| !! | ATATCCTTATCAAAAAATTC+GGG | + | chr6_4:86435536-86435555 | Msa1001990:intron | 20.0% |
| !! | TTGAATTGAATGAATGATTA+AGG | - | chr6_4:86435593-86435612 | None:intergenic | 20.0% |
| !! | ATCATTCATTCAATTCAAAA+TGG | + | chr6_4:86435595-86435614 | Msa1001990:intron | 20.0% |
| !! | GGAAAATAACTCAAATTTAA+GGG | - | chr6_4:86435921-86435940 | None:intergenic | 20.0% |
| !! | TGGAAAATAACTCAAATTTA+AGG | - | chr6_4:86435922-86435941 | None:intergenic | 20.0% |
| !! | GAAAATATTAGAGATGAATT+TGG | - | chr6_4:86435959-86435978 | None:intergenic | 20.0% |
| !!! | TATTTTATGAGTTTGAAGTT+TGG | + | chr6_4:86436365-86436384 | Msa1001990:intron | 20.0% |
| !! | TAATTAAATAAGGTTGTGTT+TGG | + | chr6_4:86436404-86436423 | Msa1001990:intron | 20.0% |
| !! | CTCAAGAGAAAAATATATAA+AGG | - | chr6_4:86436521-86436540 | None:intergenic | 20.0% |
| !! | CCTTATAGATTAGAAAATTA+AGG | - | chr6_4:86436546-86436565 | None:intergenic | 20.0% |
| !!! | CCTTAATTTTCTAATCTATA+AGG | + | chr6_4:86436543-86436562 | Msa1001990:CDS | 20.0% |
| !!! | GGAAAATCACTCAATTTTTT+TGG | - | chr6_4:86430942-86430961 | None:intergenic | 25.0% |
| ! | TGAATTTGGATTTATGAGAT+TGG | - | chr6_4:86430966-86430985 | None:intergenic | 25.0% |
| ! | ACTAATTGTACATTTCTTTG+TGG | + | chr6_4:86431070-86431089 | Msa1001990:intron | 25.0% |
| ! | AAATTGTGTTGTGAGTAAAT+AGG | - | chr6_4:86431515-86431534 | None:intergenic | 25.0% |
| ! | TTTCTATTCAATAAAGCAAG+AGG | + | chr6_4:86431631-86431650 | Msa1001990:intron | 25.0% |
| ! | ATTCTATTCAAATGAACAAG+AGG | - | chr6_4:86431711-86431730 | None:intergenic | 25.0% |
| ! | TCTTGTTCATTTGAATAGAA+TGG | + | chr6_4:86431710-86431729 | Msa1001990:intron | 25.0% |
| ! | TCTTGTTCATTTGAATAGAA+CGG | + | chr6_4:86431710-86431729 | Msa1001990:intron | 25.0% |
| ! | AAAGTAAAAGGTGATTTACT+AGG | - | chr6_4:86431821-86431840 | None:intergenic | 25.0% |
| !! | AGTAAATCACCTTTTACTTT+AGG | + | chr6_4:86431821-86431840 | Msa1001990:intron | 25.0% |
| !! | TCATGTTTTACTTGAATTTG+GGG | - | chr6_4:86431907-86431926 | None:intergenic | 25.0% |
| ! | TAAATGGCTCAGAAAATAAT+GGG | + | chr6_4:86431960-86431979 | Msa1001990:intron | 25.0% |
| ! | AAAATCATCATACAAGAAGT+TGG | + | chr6_4:86432126-86432145 | Msa1001990:intron | 25.0% |
| !!! | ATGATGTTATTTTCCTTCTT+TGG | - | chr6_4:86432161-86432180 | None:intergenic | 25.0% |
| ! | CAATGTATCATCATATTCAT+TGG | + | chr6_4:86432229-86432248 | Msa1001990:intron | 25.0% |
| ! | CATATTCATTGGATAATTAC+AGG | + | chr6_4:86432240-86432259 | Msa1001990:intron | 25.0% |
| !! | TGGTTTGTATAATGTATCAA+TGG | - | chr6_4:86432374-86432393 | None:intergenic | 25.0% |
| ! | AGCCTTAAATTTATCATCAT+CGG | + | chr6_4:86432536-86432555 | Msa1001990:intron | 25.0% |
| !! | ATGTGTTTTGTGTCAAATTT+TGG | - | chr6_4:86432948-86432967 | None:intergenic | 25.0% |
| ! | ACTATAAAGGTAAAATCAAG+AGG | + | chr6_4:86433423-86433442 | Msa1001990:intron | 25.0% |
| ! | TATTCTTCAATTACCATCTT+AGG | - | chr6_4:86433459-86433478 | None:intergenic | 25.0% |
| ! | AAGATGGTAATTGAAGAATA+TGG | + | chr6_4:86433459-86433478 | Msa1001990:intron | 25.0% |
| !! | TAGAATTATTGGTGTTTGAT+AGG | - | chr6_4:86433546-86433565 | None:intergenic | 25.0% |
| ! | ACCAATAATTCTACGAAATT+AGG | + | chr6_4:86433553-86433572 | Msa1001990:intron | 25.0% |
| ! | TCCTAATTTCGTAGAATTAT+TGG | - | chr6_4:86433557-86433576 | None:intergenic | 25.0% |
| ! | GATTTATAGAGTTGAGTTTA+GGG | + | chr6_4:86433623-86433642 | Msa1001990:intron | 25.0% |
| ! | GAACAAAATTTAACTGTCAT+TGG | + | chr6_4:86433914-86433933 | Msa1001990:intron | 25.0% |
| ! | CTAATATAAATTAACCCATC+TGG | + | chr6_4:86434331-86434350 | Msa1001990:intron | 25.0% |
| ! | AAAACTATAGACTATGTGTA+CGG | - | chr6_4:86434528-86434547 | None:intergenic | 25.0% |
| ! | CTAAGAATAATCATTTGAGT+TGG | - | chr6_4:86434800-86434819 | None:intergenic | 25.0% |
| ! | TTCTTGAATAAACTTTGGAT+CGG | - | chr6_4:86434961-86434980 | None:intergenic | 25.0% |
| !! | TTGATCATGTTTTACTAAGA+GGG | - | chr6_4:86435167-86435186 | None:intergenic | 25.0% |
| !! | TTTGATCATGTTTTACTAAG+AGG | - | chr6_4:86435168-86435187 | None:intergenic | 25.0% |
| ! | GAAAAGGTAACATCAATATT+TGG | + | chr6_4:86435249-86435268 | Msa1001990:intron | 25.0% |
| ! | GAATGAATGATTAAGGAATT+TGG | - | chr6_4:86435586-86435605 | None:intergenic | 25.0% |
| ! | CAATAACAATAGAGAGAATT+TGG | + | chr6_4:86435678-86435697 | Msa1001990:intron | 25.0% |
| ! | TGAATTTGGATTTATGAGAT+TGG | - | chr6_4:86430966-86430985 | None:intergenic | 25.0% |
| !! | TTGAATTTATACCCATGTTT+TGG | - | chr6_4:86436169-86436188 | None:intergenic | 25.0% |
| !!! | CTATTTTTAGTATGACGAAT+CGG | + | chr6_4:86436208-86436227 | Msa1001990:intron | 25.0% |
| ! | ATTATCCTAACATTTGACTA+TGG | + | chr6_4:86436327-86436346 | Msa1001990:intron | 25.0% |
| ! | AAAAACCATAGTCAAATGTT+AGG | - | chr6_4:86436335-86436354 | None:intergenic | 25.0% |
| ! | TTTGATAAGAATTATGGAAG+TGG | + | chr6_4:86436439-86436458 | Msa1001990:CDS | 25.0% |
| ! | TTGATAAGAATTATGGAAGT+GGG | + | chr6_4:86436440-86436459 | Msa1001990:CDS | 25.0% |
| AATTGCTGGTAATATCAAGA+AGG | + | chr6_4:86430875-86430894 | Msa1001990:CDS | 30.0% | |
| ATTTGGATTTATGAGATTGG+TGG | - | chr6_4:86430963-86430982 | None:intergenic | 30.0% | |
| ! | AAGCTAGAGAAATTTTTACG+AGG | + | chr6_4:86431102-86431121 | Msa1001990:intron | 30.0% |
| ! | AGCTAGAGAAATTTTTACGA+GGG | + | chr6_4:86431103-86431122 | Msa1001990:intron | 30.0% |
| TTTGCAAATGAATTTGGTTG+AGG | + | chr6_4:86431309-86431328 | Msa1001990:intron | 30.0% | |
| GAATATTACGAAGATTCTTG+AGG | - | chr6_4:86431462-86431481 | None:intergenic | 30.0% | |
| ! | ACAATCCTTTGTTTCTCATA+TGG | + | chr6_4:86431540-86431559 | Msa1001990:intron | 30.0% |
| ! | CAATCCTTTGTTTCTCATAT+GGG | + | chr6_4:86431541-86431560 | Msa1001990:intron | 30.0% |
| TTCTTAATCTACCTTCTCAT+TGG | + | chr6_4:86431775-86431794 | Msa1001990:intron | 30.0% | |
| GTAAATGGCTCAGAAAATAA+TGG | + | chr6_4:86431959-86431978 | Msa1001990:intron | 30.0% | |
| TTCACTGAAATTGTGCATAT+CGG | + | chr6_4:86432289-86432308 | Msa1001990:intron | 30.0% | |
| ACATACATAAGACACTAGAT+TGG | + | chr6_4:86432329-86432348 | Msa1001990:intron | 30.0% | |
| GACCGATGATGATAAATTTA+AGG | - | chr6_4:86432541-86432560 | None:intergenic | 30.0% | |
| CTAATCTAATCTTCTCAATG+AGG | - | chr6_4:86433079-86433098 | None:intergenic | 30.0% | |
| ACCAACAATGAAAAATCAAG+AGG | + | chr6_4:86433202-86433221 | Msa1001990:intron | 30.0% | |
| ! | TCCTCTTGATTTTTCATTGT+TGG | - | chr6_4:86433206-86433225 | None:intergenic | 30.0% |
| ! | ACATTGATGATATCTGTGAT+AGG | - | chr6_4:86433302-86433321 | None:intergenic | 30.0% |
| AGGAATTGAAAAACCTAAGA+TGG | + | chr6_4:86433443-86433462 | Msa1001990:intron | 30.0% | |
| CATATCATATTGATGCGAAT+TGG | - | chr6_4:86433504-86433523 | None:intergenic | 30.0% | |
| GGATTTATAGAGTTGAGTTT+AGG | + | chr6_4:86433622-86433641 | Msa1001990:intron | 30.0% | |
| ! | GATTTCAAGAGTATAGTAAC+CGG | + | chr6_4:86433697-86433716 | Msa1001990:intron | 30.0% |
| ! | ATTTCAAGAGTATAGTAACC+GGG | + | chr6_4:86433698-86433717 | Msa1001990:intron | 30.0% |
| !!! | CCACTAACGTTTTTTCTTTT+GGG | - | chr6_4:86433734-86433753 | None:intergenic | 30.0% |
| !!! | ACCACTAACGTTTTTTCTTT+TGG | - | chr6_4:86433735-86433754 | None:intergenic | 30.0% |
| AAGAAAAAACGTTAGTGGTA+AGG | + | chr6_4:86433736-86433755 | Msa1001990:intron | 30.0% | |
| AGAAAAAACGTTAGTGGTAA+GGG | + | chr6_4:86433737-86433756 | Msa1001990:intron | 30.0% | |
| ! | TTTTGCTCTGACTTTTAACA+GGG | + | chr6_4:86434418-86434437 | Msa1001990:intron | 30.0% |
| AGATTCATCAGTGTTTGAAT+CGG | + | chr6_4:86434468-86434487 | Msa1001990:intron | 30.0% | |
| TAATTCTATACCATGTGACA+TGG | + | chr6_4:86434681-86434700 | Msa1001990:intron | 30.0% | |
| !! | GAATAATCATTTGAGTTGGA+GGG | - | chr6_4:86434796-86434815 | None:intergenic | 30.0% |
| !! | AGAATAATCATTTGAGTTGG+AGG | - | chr6_4:86434797-86434816 | None:intergenic | 30.0% |
| ! | ACAAAATTGGTTAGAAGTAC+TGG | + | chr6_4:86434983-86435002 | Msa1001990:intron | 30.0% |
| ATCTATCAACTTGTCTAAAG+TGG | - | chr6_4:86435103-86435122 | None:intergenic | 30.0% | |
| TCATAGACAAAAGAATTGAC+CGG | - | chr6_4:86435296-86435315 | None:intergenic | 30.0% | |
| !!! | GTAACCCGAATTTTTTGATA+AGG | - | chr6_4:86435543-86435562 | None:intergenic | 30.0% |
| !!! | AATTGCTGGTTTTATCAAGA+AGG | + | chr6_4:86435859-86435878 | Msa1001990:CDS | 30.0% |
| ATTTGGATTTATGAGATTGG+TGG | - | chr6_4:86430963-86430982 | None:intergenic | 30.0% | |
| TGTTGAAATTTCAACGAGTT+CGG | - | chr6_4:86436002-86436021 | None:intergenic | 30.0% | |
| CGATTCGTCATACTAAAAAT+AGG | - | chr6_4:86436210-86436229 | None:intergenic | 30.0% | |
| TAATAGGATGAAGGGTAATT+AGG | + | chr6_4:86436272-86436291 | Msa1001990:intron | 30.0% | |
| AATAGGATGAAGGGTAATTA+GGG | + | chr6_4:86436273-86436292 | Msa1001990:intron | 30.0% | |
| ! | TATGAGTTTGAAGTTTGGTT+TGG | + | chr6_4:86436370-86436389 | Msa1001990:intron | 30.0% |
| CAGGAGTTTGATAAGAATTA+TGG | + | chr6_4:86436433-86436452 | Msa1001990:intron | 30.0% | |
| GAAAAATATATAAAGGTCCC+TGG | - | chr6_4:86436514-86436533 | None:intergenic | 30.0% | |
| GCTTGAATTTGCATCTTCAA+AGG | - | chr6_4:86430801-86430820 | None:intergenic | 35.0% | |
| TGTGATTGTAGATCAATTGC+TGG | + | chr6_4:86430861-86430880 | Msa1001990:CDS | 35.0% | |
| CCATGGATACAAAAGTTTGT+TGG | - | chr6_4:86431037-86431056 | None:intergenic | 35.0% | |
| ! | CCAACAAACTTTTGTATCCA+TGG | + | chr6_4:86431034-86431053 | Msa1001990:intron | 35.0% |
| TAGTATAAACAGGAGATCCA+TGG | - | chr6_4:86431054-86431073 | None:intergenic | 35.0% | |
| ! | GCTAGAGAAATTTTTACGAG+GGG | + | chr6_4:86431104-86431123 | Msa1001990:intron | 35.0% |
| ! | CTAGAGAAATTTTTACGAGG+GGG | + | chr6_4:86431105-86431124 | Msa1001990:intron | 35.0% |
| GTAACCCATATGAGAAACAA+AGG | - | chr6_4:86431548-86431567 | None:intergenic | 35.0% | |
| ATAACGAATAGAATGACCAG+AGG | - | chr6_4:86431574-86431593 | None:intergenic | 35.0% | |
| ! | TCACCTTTTACTTTAGGCTT+TGG | + | chr6_4:86431827-86431846 | Msa1001990:intron | 35.0% |
| CATCCAAAGCCTAAAGTAAA+AGG | - | chr6_4:86431833-86431852 | None:intergenic | 35.0% | |
| TTGGCATTAACATCCAAAGA+AGG | + | chr6_4:86432145-86432164 | Msa1001990:intron | 35.0% | |
| CGTTATAATCTAGTGGCTTA+TGG | - | chr6_4:86432394-86432413 | None:intergenic | 35.0% | |
| !!! | TATGCTGTTTTATCCTTCCT+TGG | - | chr6_4:86432807-86432826 | None:intergenic | 35.0% |
| TGTCTGTGATGATATCTTGA+AGG | - | chr6_4:86432894-86432913 | None:intergenic | 35.0% | |
| AATCAAGAGGACTCAGAATA+TGG | + | chr6_4:86433215-86433234 | Msa1001990:intron | 35.0% | |
| ATCAAGAGGACTCAGAATAT+GGG | + | chr6_4:86433216-86433235 | Msa1001990:intron | 35.0% | |
| TGGTGATATAACAGAATGGT+CGG | + | chr6_4:86433239-86433258 | Msa1001990:intron | 35.0% | |
| CCCAAAAGAAAAAACGTTAG+TGG | + | chr6_4:86433731-86433750 | Msa1001990:intron | 35.0% | |
| ATAAATTAACCCATCTGGGT+TGG | + | chr6_4:86434336-86434355 | Msa1001990:intron | 35.0% | |
| ! | GTTTTGCTCTGACTTTTAAC+AGG | + | chr6_4:86434417-86434436 | Msa1001990:intron | 35.0% |
| ! | TTTGCTCTGACTTTTAACAG+GGG | + | chr6_4:86434419-86434438 | Msa1001990:intron | 35.0% |
| !! | CATAGTCTATAGTTTTGCCT+TGG | + | chr6_4:86434532-86434551 | Msa1001990:intron | 35.0% |
| !! | CAAATAAGATTAGCTCTAGC+AGG | - | chr6_4:86434596-86434615 | None:intergenic | 35.0% |
| TCTGCTTAACCCACTAAAAA+TGG | + | chr6_4:86435043-86435062 | Msa1001990:intron | 35.0% | |
| !!! | CTCATCGTTCCATTTTTAGT+GGG | - | chr6_4:86435055-86435074 | None:intergenic | 35.0% |
| !! | TCTCATCGTTCCATTTTTAG+TGG | - | chr6_4:86435056-86435075 | None:intergenic | 35.0% |
| ACTTGTACCAGGATAAGAAA+AGG | + | chr6_4:86435233-86435252 | Msa1001990:intron | 35.0% | |
| ! | GATGTTACCTTTTCTTATCC+TGG | - | chr6_4:86435243-86435262 | None:intergenic | 35.0% |
| CATAGACAAAAGAATTGACC+GGG | - | chr6_4:86435295-86435314 | None:intergenic | 35.0% | |
| !!! | TTATTTTGACCAGTGGAGAA+AGG | - | chr6_4:86435403-86435422 | None:intergenic | 35.0% |
| TTAAGGAATTTGGCAGCTTA+TGG | - | chr6_4:86435576-86435595 | None:intergenic | 35.0% | |
| GCTTGAATTTGCATCTTCAA+AGG | - | chr6_4:86430801-86430820 | None:intergenic | 35.0% | |
| TGTGATTGTAGATCAATTGC+TGG | + | chr6_4:86430861-86430880 | Msa1001990:CDS | 35.0% | |
| TAGCAAAGTTGAATTTGAGC+TGG | - | chr6_4:86436108-86436127 | None:intergenic | 35.0% | |
| AGGGTAATTAGGGAAATTCA+TGG | + | chr6_4:86436283-86436302 | Msa1001990:intron | 35.0% | |
| ! | AGGGAAATTCATGGTTTTTG+TGG | + | chr6_4:86436292-86436311 | Msa1001990:intron | 35.0% |
| ! | ATTCATGGTTTTTGTGGTGT+AGG | + | chr6_4:86436298-86436317 | Msa1001990:intron | 35.0% |
| !!! | AGGTTGTGTTTGGTTTTTTC+AGG | + | chr6_4:86436414-86436433 | Msa1001990:intron | 35.0% |
| ATAAGAATTATGGAAGTGGG+TGG | + | chr6_4:86436443-86436462 | Msa1001990:CDS | 35.0% | |
| ! | TGTGTAGTAGGTTCCAATTT+TGG | + | chr6_4:86436469-86436488 | Msa1001990:CDS | 35.0% |
| ! | GTGTAGTAGGTTCCAATTTT+GGG | + | chr6_4:86436470-86436489 | Msa1001990:CDS | 35.0% |
| !! | GCTAAAAAAGCACCCAAAAT+TGG | - | chr6_4:86436485-86436504 | None:intergenic | 35.0% |
| AGCTTGAGAAGCAAATGACA+TGG | - | chr6_4:86430823-86430842 | None:intergenic | 40.0% | |
| GTACATTTCTTTGTGGACAG+CGG | + | chr6_4:86431077-86431096 | Msa1001990:intron | 40.0% | |
| ! | TCATATGGGTTACAAACCTC+TGG | + | chr6_4:86431555-86431574 | Msa1001990:intron | 40.0% |
| AATTAGACCTCAGACATCCA+AGG | + | chr6_4:86432433-86432452 | Msa1001990:intron | 40.0% | |
| AATGCTGCTATATCCTTCCT+TGG | - | chr6_4:86432453-86432472 | None:intergenic | 40.0% | |
| GTTTCTCAAAACATTCGCAG+TGG | - | chr6_4:86432515-86432534 | None:intergenic | 40.0% | |
| GTTTCTCAAAACATTCGCAG+TGG | - | chr6_4:86432515-86432534 | None:intergenic | 40.0% | |
| TGGGTGGTGATATAACAGAA+TGG | + | chr6_4:86433235-86433254 | Msa1001990:intron | 40.0% | |
| ATATAACAGAATGGTCGGCA+AGG | + | chr6_4:86433244-86433263 | Msa1001990:intron | 40.0% | |
| TGAGTGAATTTGTGAAGGTG+AGG | + | chr6_4:86433595-86433614 | Msa1001990:intron | 40.0% | |
| GAGTGAATTTGTGAAGGTGA+GGG | + | chr6_4:86433596-86433615 | Msa1001990:intron | 40.0% | |
| AATTTGTGAAGGTGAGGGTT+AGG | + | chr6_4:86433601-86433620 | Msa1001990:intron | 40.0% | |
| ! | TATAGTAACCGGGTTGAGTT+TGG | + | chr6_4:86433708-86433727 | Msa1001990:intron | 40.0% |
| GTAAGGGCTTTCTCATATGT+GGG | + | chr6_4:86433753-86433772 | Msa1001990:intron | 40.0% | |
| GAACAGCGTTTAACTGTCAT+TGG | - | chr6_4:86433870-86433889 | None:intergenic | 40.0% | |
| ATTACTAGTCCAACCCAGAT+GGG | - | chr6_4:86434348-86434367 | None:intergenic | 40.0% | |
| AATTACTAGTCCAACCCAGA+TGG | - | chr6_4:86434349-86434368 | None:intergenic | 40.0% | |
| !! | GTCTATAGTTTTGCCTTGGT+TGG | + | chr6_4:86434536-86434555 | Msa1001990:intron | 40.0% |
| CTCTAACACCTGAGTTCTTA+AGG | - | chr6_4:86434563-86434582 | None:intergenic | 40.0% | |
| !! | ATAAGATTAGCTCTAGCAGG+AGG | - | chr6_4:86434593-86434612 | None:intergenic | 40.0% |
| CAGATCAACTTGAGTGGTAA+TGG | - | chr6_4:86435022-86435041 | None:intergenic | 40.0% | |
| GTGGAAAGAGCAAACTAGAT+AGG | - | chr6_4:86435084-86435103 | None:intergenic | 40.0% | |
| TCCAAATTCACACTTGTACC+AGG | + | chr6_4:86435222-86435241 | Msa1001990:intron | 40.0% | |
| TCCTGGTACAAGTGTGAATT+TGG | - | chr6_4:86435226-86435245 | None:intergenic | 40.0% | |
| TACCATAATCCTTTCTCCAC+TGG | + | chr6_4:86435391-86435410 | Msa1001990:intron | 40.0% | |
| !!! | CATGGTCTTATTTTGACCAG+TGG | - | chr6_4:86435410-86435429 | None:intergenic | 40.0% |
| TTTCTCTTCAAAGTGGAGCA+TGG | - | chr6_4:86435428-86435447 | None:intergenic | 40.0% | |
| AAGAGAGCAACTCAAGATGT+TGG | + | chr6_4:86435727-86435746 | Msa1001990:intron | 40.0% | |
| AGCTTGAGAAGCAAATGACA+TGG | - | chr6_4:86430823-86430842 | None:intergenic | 40.0% | |
| !!! | TGCTTTTTTAGCCATACACC+AGG | + | chr6_4:86436493-86436512 | Msa1001990:CDS | 40.0% |
| !!! | GCTTTTTTAGCCATACACCA+GGG | + | chr6_4:86436494-86436513 | Msa1001990:CDS | 40.0% |
| ATATAAAGGTCCCTGGTGTA+TGG | - | chr6_4:86436507-86436526 | None:intergenic | 40.0% | |
| TGTTGGAATCTCAGCGAGTT+CGG | - | chr6_4:86431020-86431039 | None:intergenic | 45.0% | |
| TTGAAAGGATGGGGTAGCTT+TGG | - | chr6_4:86431414-86431433 | None:intergenic | 45.0% | |
| AAGCTACCCCATCCTTTCAA+AGG | + | chr6_4:86431414-86431433 | Msa1001990:intron | 45.0% | |
| AGCTACCCCATCCTTTCAAA+GGG | + | chr6_4:86431415-86431434 | Msa1001990:intron | 45.0% | |
| ! | CGATTCCCTTTGAAAGGATG+GGG | - | chr6_4:86431423-86431442 | None:intergenic | 45.0% |
| ! | GCGATTCCCTTTGAAAGGAT+GGG | - | chr6_4:86431424-86431443 | None:intergenic | 45.0% |
| ! | TCTTGAGGTGTCCACAAACA+GGG | - | chr6_4:86431447-86431466 | None:intergenic | 45.0% |
| ! | TTCTTGAGGTGTCCACAAAC+AGG | - | chr6_4:86431448-86431467 | None:intergenic | 45.0% |
| GACATACTTTCTTCAGCACC+AGG | - | chr6_4:86431677-86431696 | None:intergenic | 45.0% | |
| ATCTACCTTCTCATTGGCGT+TGG | + | chr6_4:86431781-86431800 | Msa1001990:intron | 45.0% | |
| AAACACCAACGCCAATGAGA+AGG | - | chr6_4:86431789-86431808 | None:intergenic | 45.0% | |
| ! | TCAGCACTGAAACATCAGAG+TGG | + | chr6_4:86431996-86432015 | Msa1001990:intron | 45.0% |
| ! | ACATCATTAGCTCTCAAGCC+TGG | + | chr6_4:86432174-86432193 | Msa1001990:intron | 45.0% |
| TATCCTTCCTTGGATGTCTG+AGG | - | chr6_4:86432443-86432462 | None:intergenic | 45.0% | |
| ATCGTTGTCTCAGACATCCA+AGG | + | chr6_4:86432787-86432806 | Msa1001990:intron | 45.0% | |
| TTGTCTCAGACATCCAAGGA+AGG | + | chr6_4:86432791-86432810 | Msa1001990:intron | 45.0% | |
| ACAGCATAAACTCTCAAGCC+TGG | + | chr6_4:86432819-86432838 | Msa1001990:intron | 45.0% | |
| AAGAGGACTCAGAATATGGG+TGG | + | chr6_4:86433219-86433238 | Msa1001990:intron | 45.0% | |
| ATAGGTCTCGTTCGTCGTAA+TGG | - | chr6_4:86433284-86433303 | None:intergenic | 45.0% | |
| GCAGCTGAGTGAATTTGTGA+AGG | + | chr6_4:86433590-86433609 | Msa1001990:intron | 45.0% | |
| CATACGCGTAGGTTAATTCG+CGG | - | chr6_4:86433677-86433696 | None:intergenic | 45.0% | |
| CTCTTGAAATCCATACGCGT+AGG | - | chr6_4:86433688-86433707 | None:intergenic | 45.0% | |
| GGTAAGGGCTTTCTCATATG+TGG | + | chr6_4:86433752-86433771 | Msa1001990:intron | 45.0% | |
| GAGTTCTTAAGGACCAACCA+AGG | - | chr6_4:86434552-86434571 | None:intergenic | 45.0% | |
| ! | TGGTTGGTCCTTAAGAACTC+AGG | + | chr6_4:86434552-86434571 | Msa1001990:intron | 45.0% |
| GCAGATCAGATCAACTTGAG+TGG | - | chr6_4:86435028-86435047 | None:intergenic | 45.0% | |
| AAAAGAATTGACCGGGTGGT+TGG | - | chr6_4:86435288-86435307 | None:intergenic | 45.0% | |
| AGACAAAAGAATTGACCGGG+TGG | - | chr6_4:86435292-86435311 | None:intergenic | 45.0% | |
| GACCAGTGGAGAAAGGATTA+TGG | - | chr6_4:86435396-86435415 | None:intergenic | 45.0% | |
| GAGCAACTCAAGATGTTGGA+AGG | + | chr6_4:86435731-86435750 | Msa1001990:intron | 45.0% | |
| GTATGACGAATCGGAAGTCA+TGG | + | chr6_4:86436217-86436236 | Msa1001990:intron | 45.0% | |
| !!! | TCAATAAAAATAAAAATTTT+GGG | + | chr6_4:86431384-86431403 | Msa1001990:intron | 5.0% |
| !!! | AAAGTTAATTAAAATTTTAT+TGG | - | chr6_4:86432051-86432070 | None:intergenic | 5.0% |
| !!! | ATTTTAAATATTATAATCAT+TGG | + | chr6_4:86433132-86433151 | Msa1001990:intron | 5.0% |
| !!! | TTTTTTAAAGATTTTAAATT+CGG | - | chr6_4:86434497-86434516 | None:intergenic | 5.0% |
| ! | GGCGATTCCCTTTGAAAGGA+TGG | - | chr6_4:86431425-86431444 | None:intergenic | 50.0% |
| ! | CTTGAGGTGTCCACAAACAG+GGG | - | chr6_4:86431446-86431465 | None:intergenic | 50.0% |
| ! | TTAGCTCTCAAGCCTGGCAA+AGG | + | chr6_4:86432180-86432199 | Msa1001990:intron | 50.0% |
| CATTTGCCTTTGCCTTTGCC+AGG | - | chr6_4:86432195-86432214 | None:intergenic | 50.0% | |
| AGACCTCAGACATCCAAGGA+AGG | + | chr6_4:86432437-86432456 | Msa1001990:intron | 50.0% | |
| GCAGCATTAACTCTCAAGCC+TGG | + | chr6_4:86432465-86432484 | Msa1001990:intron | 50.0% | |
| TAACTCTCAAGCCTGGCGAA+AGG | + | chr6_4:86432472-86432491 | Msa1001990:intron | 50.0% | |
| AAGAACTTTCGCCTTTCGCC+AGG | - | chr6_4:86432486-86432505 | None:intergenic | 50.0% | |
| TGGCGAAAGGCGAAAGTTCT+TGG | + | chr6_4:86432485-86432504 | Msa1001990:intron | 50.0% | |
| GGCGAAAGGCGAAAGTTCTT+GGG | + | chr6_4:86432486-86432505 | Msa1001990:intron | 50.0% | |
| GAAAGGCGAAAGTTCTTGGG+CGG | + | chr6_4:86432489-86432508 | Msa1001990:intron | 50.0% | |
| TAAACTCTCAAGCCTGGCGA+AGG | + | chr6_4:86432825-86432844 | Msa1001990:intron | 50.0% | |
| TAAGAACTTTCGCCTTCGCC+AGG | - | chr6_4:86432840-86432859 | None:intergenic | 50.0% | |
| TGGCGAAGGCGAAAGTTCTT+AGG | + | chr6_4:86432839-86432858 | Msa1001990:intron | 50.0% | |
| CGAAGGCGAAAGTTCTTAGG+CGG | + | chr6_4:86432842-86432861 | Msa1001990:intron | 50.0% | |
| TTAATTCGCGGCGCAACTCT+TGG | - | chr6_4:86433665-86433684 | None:intergenic | 50.0% | |
| CGCGAATTAACCTACGCGTA+TGG | + | chr6_4:86433675-86433694 | Msa1001990:intron | 50.0% | |
| ! | CTTTTGGGCCAAACTCAACC+CGG | - | chr6_4:86433719-86433738 | None:intergenic | 50.0% |
| ! | TGACTTTTAACAGGGGCCCT+GGG | + | chr6_4:86434426-86434445 | Msa1001990:intron | 50.0% |
| TCAGTCAATCCTACAGCCCA+GGG | - | chr6_4:86434445-86434464 | None:intergenic | 50.0% | |
| ATCAGTCAATCCTACAGCCC+AGG | - | chr6_4:86434446-86434465 | None:intergenic | 50.0% | |
| CGTACACGAGTTCGATTACG+AGG | - | chr6_4:86435201-86435220 | None:intergenic | 50.0% | |
| AGTGGGTGGCAATGTGTAGT+AGG | + | chr6_4:86436457-86436476 | Msa1001990:CDS | 50.0% | |
| CAGGGGCGATTCCCTTTGAA+AGG | - | chr6_4:86431429-86431448 | None:intergenic | 55.0% | |
| AAGGGAATCGCCCCTGTTTG+TGG | + | chr6_4:86431433-86431452 | Msa1001990:intron | 55.0% | |
| CTCAAGCCTGGCAAAGGCAA+AGG | + | chr6_4:86432186-86432205 | Msa1001990:intron | 55.0% | |
| ! | CTGACTTTTAACAGGGGCCC+TGG | + | chr6_4:86434425-86434444 | Msa1001990:intron | 55.0% |
| ATGTGACATGGCCTCGCGAA+GGG | + | chr6_4:86434693-86434712 | Msa1001990:intron | 55.0% | |
| CTTCGCGAGGCCATGTCACA+TGG | - | chr6_4:86434694-86434713 | None:intergenic | 60.0% | |
| CATGTGACATGGCCTCGCGA+AGG | + | chr6_4:86434692-86434711 | Msa1001990:intron | 60.0% | |
| GATCCTCTGATCCCTTCGCG+AGG | - | chr6_4:86434707-86434726 | None:intergenic | 60.0% | |
| GCGCTAAGCTTCCAACCACC+CGG | + | chr6_4:86435274-86435293 | Msa1001990:intron | 60.0% | |
| TAACAGGGGCCCTGGGCTGT+AGG | + | chr6_4:86434433-86434452 | Msa1001990:intron | 65.0% | |
| TGGCCTCGCGAAGGGATCAG+AGG | + | chr6_4:86434701-86434720 | Msa1001990:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 86430759 | 86436579 | 86430759 | ID=Msa1001990;Name=Msa1001990 |
| chr6_4 | mRNA | 86430759 | 86436579 | 86430759 | ID=Msa1001990-mRNA-1;Parent=Msa1001990;Name=Msa1001990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|0.5|1|3|0|139 |
| chr6_4 | exon | 86430759 | 86430896 | 86430759 | ID=Msa1001990-mRNA-1:exon:16982;Parent=Msa1001990-mRNA-1 |
| chr6_4 | exon | 86435743 | 86435880 | 86435743 | ID=Msa1001990-mRNA-1:exon:16983;Parent=Msa1001990-mRNA-1 |
| chr6_4 | exon | 86436436 | 86436579 | 86436436 | ID=Msa1001990-mRNA-1:exon:16984;Parent=Msa1001990-mRNA-1 |
| chr6_4 | CDS | 86430759 | 86430896 | 86430759 | ID=Msa1001990-mRNA-1:cds;Parent=Msa1001990-mRNA-1 |
| chr6_4 | CDS | 86435743 | 86435880 | 86435743 | ID=Msa1001990-mRNA-1:cds;Parent=Msa1001990-mRNA-1 |
| chr6_4 | CDS | 86436436 | 86436579 | 86436436 | ID=Msa1001990-mRNA-1:cds;Parent=Msa1001990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
