AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0468320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0468320 MtrunA17_Chr3g0130561 99.539 217 1 0 1 217 1 217 1.56e-150 417
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0468320 AT5G09260.1 78.082 219 43 3 1 217 1 216 3.39e-115 327
Msa0468320 AT5G63880.1 73.636 220 54 2 1 217 1 219 2.87e-110 315
Msa0468320 AT5G63880.2 66.393 244 54 3 1 217 1 243 1.48e-104 301

Find 63 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAAGATGAGAATTGAAAT+TGG 0.195549 3_3:+69980578 None:intergenic
AGAAGATGAAGAGGAGATTT+TGG 0.201044 3_3:-69978777 Msa0468320:CDS
GGCTGTCTTTGAAAGTTTAA+AGG 0.219717 3_3:-69979167 Msa0468320:CDS
CTGTTGCCTCATGCAGTTAC+TGG 0.256201 3_3:-69976930 Msa0468320:three_prime_UTR
ACTGAGCAAGTTTGCGTCTC+TGG 0.262924 3_3:+69980449 None:intergenic
GTAAAATTGTTTCACTCCTT+TGG 0.289606 3_3:+69976787 None:intergenic
AATGTTTATCTCACTTTGTA+TGG 0.301517 3_3:+69979123 None:intergenic
AAATATGTGAGGGACAAATA+AGG 0.309245 3_3:+69980685 None:intergenic
TGAAGATGTTCAGAAACTTA+TGG 0.330454 3_3:-69979101 Msa0468320:CDS
GGAACTGTGCTAGGAGCTTC+AGG 0.332559 3_3:+69977263 None:intergenic
AAAAGATGAGAATTGAAATT+GGG 0.381225 3_3:+69980579 None:intergenic
TTTGGCAGAGTTTGAGAACT+TGG 0.390056 3_3:-69978759 Msa0468320:CDS
CTTTCCATTTCTATTTGATA+AGG 0.391434 3_3:-69976843 Msa0468320:three_prime_UTR
GTCGTTTCCAACAGCAGTTT+CGG 0.399899 3_3:+69980630 None:intergenic
GAAGAAAGATAGGGCCTTGT+TGG 0.403435 3_3:-69979651 Msa0468320:CDS
AAGGAAATTAATGCAATACT+TGG 0.407288 3_3:-69978815 Msa0468320:CDS
CAAAGCAGTTAACTGTGTTT+CGG 0.412465 3_3:+69977005 None:intergenic
CGATCTACGTCCGTTACCTT+AGG 0.414802 3_3:+69980493 None:intergenic
GCATCACTCGTAGTGGTAAC+TGG 0.415859 3_3:+69977191 None:intergenic
GAAACCTTATCAAATAGAAA+TGG 0.429916 3_3:+69976839 None:intergenic
ATGCACACACTATTTATTTG+AGG 0.444815 3_3:-69976693 Msa0468320:three_prime_UTR
AATATGTGAGGGACAAATAA+GGG 0.468508 3_3:+69980686 None:intergenic
AGGAAATTAATGCAATACTT+GGG 0.470100 3_3:-69978814 Msa0468320:CDS
TTGCTCAACATTTATAAGCC+AGG 0.478759 3_3:+69979580 None:intergenic
CTGAGCAAGTTTGCGTCTCT+GGG 0.482606 3_3:+69980450 None:intergenic
GAGGTATAATGACTTGAGAA+TGG 0.487312 3_3:-69976721 Msa0468320:three_prime_UTR
GTCTTTGAAAGTTTAAAGGC+TGG 0.504167 3_3:-69979163 Msa0468320:CDS
AACAGTTATGGAGGAACCAT+TGG 0.511723 3_3:-69977048 Msa0468320:intron
GCAAACCAAAGTGTAGCATC+TGG 0.514076 3_3:-69976983 Msa0468320:three_prime_UTR
ATTGTTATAAATGTATAATG+AGG 0.515076 3_3:-69976740 Msa0468320:three_prime_UTR
CGTAGTGGTAACTGGTGCCT+TGG 0.515200 3_3:+69977199 None:intergenic
ATTTACAAATCGAAATCGAT+GGG 0.515535 3_3:-69980535 Msa0468320:exon
TTCGTGAAAAGAAGAAAGAT+AGG 0.520278 3_3:-69979661 Msa0468320:CDS
GGGTATTTGTGTAAAGTGAC+AGG 0.521083 3_3:-69980812 None:intergenic
TGACAAGGTTGACGAAAAGT+TGG 0.521454 3_3:-69977240 Msa0468320:CDS
ACTTGCTCAGTATCAACAAA+AGG 0.527227 3_3:-69980437 Msa0468320:intron
ATTATCAGCAGAAGATGAAG+AGG 0.529769 3_3:-69978786 Msa0468320:CDS
AAACAGACCGAAACTGCTGT+TGG 0.545151 3_3:-69980637 Msa0468320:five_prime_UTR
GTGGTAACTGGTGCCTTGGT+TGG 0.551235 3_3:+69977203 None:intergenic
AGTGACAGGAAACAACTCTC+TGG 0.553316 3_3:-69980798 Msa0468320:five_prime_UTR
AGAAAGAGAGAAATATGTGA+GGG 0.553808 3_3:+69980675 None:intergenic
AATTTACAAATCGAAATCGA+TGG 0.565183 3_3:-69980536 Msa0468320:exon
GAAGACCAGATGCTACACTT+TGG 0.566982 3_3:+69976978 None:intergenic
AATGTTCTTCAAGCTGCCAA+TGG 0.568542 3_3:+69977032 None:intergenic
TATTGAAGCAAGTTGACACC+TGG 0.572175 3_3:-69979598 Msa0468320:CDS
ACCTTGTCAGGAACTGTGCT+AGG 0.576734 3_3:+69977254 None:intergenic
GGAAATTAATGCAATACTTG+GGG 0.576994 3_3:-69978813 Msa0468320:CDS
TATATTCGTGAAGAAACCTA+AGG 0.587486 3_3:-69980509 Msa0468320:CDS
AAGAAAGAGAGAAATATGTG+AGG 0.591113 3_3:+69980674 None:intergenic
TCGTGAAAAGAAGAAAGATA+GGG 0.592708 3_3:-69979660 Msa0468320:CDS
TTTCTTCTTTAACGCCAACA+AGG 0.596260 3_3:+69979637 None:intergenic
TGAACTGACAAGCAAGCAGA+AGG 0.603490 3_3:-69979188 Msa0468320:CDS
TTCGATTTGTAAATTCGATG+AGG 0.607402 3_3:+69980544 None:intergenic
TCCTAGCACAGTTCCTGACA+AGG 0.608316 3_3:-69977255 Msa0468320:CDS
TGAGGCAACAGAATTGATAG+TGG 0.610237 3_3:+69976942 None:intergenic
GTTTGAGAACTTGGAAACCC+AGG 0.622553 3_3:-69978750 Msa0468320:intron
CGTGAAGAAACCTAAGGTAA+CGG 0.639718 3_3:-69980503 Msa0468320:CDS
TACTTCAGCATCACTCGTAG+TGG 0.642788 3_3:+69977184 None:intergenic
AAAACTCCAGTAACTGCATG+AGG 0.644252 3_3:+69976924 None:intergenic
CCTTCTTGATGTTCCAACCA+AGG 0.644842 3_3:-69977216 Msa0468320:CDS
CCTTGGTTGGAACATCAAGA+AGG 0.649857 3_3:+69977216 None:intergenic
TGATGTTGCAACAGTTATGG+AGG 0.695628 3_3:-69977057 Msa0468320:intron
TTTACAAATCGAAATCGATG+GGG 0.717126 3_3:-69980534 Msa0468320:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTGAAATTTTTCAAT+CGG + chr3_3:69979317-69979336 None:intergenic 10.0%
!!! CTTTTTTATTTTATTTTCTT+TGG + chr3_3:69980396-69980415 None:intergenic 10.0%
!!! TTTTCTGATAATTACTTATT+AGG - chr3_3:69977144-69977163 Msa0468320:intron 15.0%
!! TTTCTGATAATTACTTATTA+GGG - chr3_3:69977145-69977164 Msa0468320:intron 15.0%
!!! ACATTTTGTTACTAAATAAA+TGG + chr3_3:69977475-69977494 None:intergenic 15.0%
!! TTTATATTCATGTTAAAAGA+GGG + chr3_3:69978233-69978252 None:intergenic 15.0%
!! ATTTATATTCATGTTAAAAG+AGG + chr3_3:69978234-69978253 None:intergenic 15.0%
!!! CTATTTTTACAATTTTCAAT+CGG + chr3_3:69979261-69979280 None:intergenic 15.0%
!! AAATTAGGAATATGATATAA+AGG - chr3_3:69980113-69980132 Msa0468320:intron 15.0%
!! ATTGTTATAAATGTATAATG+AGG - chr3_3:69980757-69980776 Msa0468320:five_prime_UTR 15.0%
!!! TTTTTTAGTTTTTTCTGTTG+AGG + chr3_3:69976898-69976917 None:intergenic 20.0%
!! AAAAGATGAGAATTGAAATT+GGG + chr3_3:69976921-69976940 None:intergenic 20.0%
!! AATAACAGATATGAAATTGA+GGG + chr3_3:69977101-69977120 None:intergenic 20.0%
!! ATGGACTTATATGTATAAAT+AGG - chr3_3:69977281-69977300 Msa0468320:CDS 20.0%
!! TCAAGAACTGTAATAAATAT+CGG - chr3_3:69977395-69977414 Msa0468320:intron 20.0%
!!! TAATATAGCGTTTTAGATTT+TGG - chr3_3:69977686-69977705 Msa0468320:intron 20.0%
!!! AAAAGTCTACTTATTTGTTT+TGG - chr3_3:69977987-69978006 Msa0468320:intron 20.0%
!!! TAAATGTAAGTATCTCTTTT+AGG + chr3_3:69978264-69978283 None:intergenic 20.0%
!!! GATACTTACATTTATTTTGT+TGG - chr3_3:69978270-69978289 Msa0468320:intron 20.0%
!! TTTAATCATAGTATATGGAA+AGG - chr3_3:69978847-69978866 Msa0468320:intron 20.0%
!! AACCTTTAGATTAAAATAGA+TGG - chr3_3:69978997-69979016 Msa0468320:intron 20.0%
!! TAACAATGAAAATAAAGATC+TGG + chr3_3:69979149-69979168 None:intergenic 20.0%
!! TAACATTAAAACAAGATGAA+GGG - chr3_3:69979230-69979249 Msa0468320:intron 20.0%
!! TAAAATCAATTCAACACTAA+CGG - chr3_3:69979345-69979364 Msa0468320:intron 20.0%
!! TTCAAATTTGTGATTTCAAT+CGG + chr3_3:69979375-69979394 None:intergenic 20.0%
!! AAACATTGAATTCAATTGTT+TGG - chr3_3:69980030-69980049 Msa0468320:intron 20.0%
!! GAGGTTATAAATTCAAAATT+AGG - chr3_3:69980098-69980117 Msa0468320:intron 20.0%
!!! GAAGTATCTATAAAAAGAAA+AGG - chr3_3:69980330-69980349 Msa0468320:intron 20.0%
! CAAAAGATGAGAATTGAAAT+TGG + chr3_3:69976922-69976941 None:intergenic 25.0%
! AATTTACAAATCGAAATCGA+TGG - chr3_3:69976961-69976980 Msa0468320:three_prime_UTR 25.0%
! ATTTACAAATCGAAATCGAT+GGG - chr3_3:69976962-69976981 Msa0468320:three_prime_UTR 25.0%
! GAATAACAGATATGAAATTG+AGG + chr3_3:69977102-69977121 None:intergenic 25.0%
! TGAACAATTGAACTAAAGTT+TGG - chr3_3:69977179-69977198 Msa0468320:CDS 25.0%
!!! CACTTTTTTGGTTATTAACT+GGG - chr3_3:69977662-69977681 Msa0468320:intron 25.0%
!!! TCTACTTATTTGTTTTGGTT+TGG - chr3_3:69977992-69978011 Msa0468320:intron 25.0%
! AATGTTTATCTCACTTTGTA+TGG + chr3_3:69978377-69978396 None:intergenic 25.0%
!!! CATGATTTTGCTTAATTTGA+AGG - chr3_3:69978663-69978682 Msa0468320:intron 25.0%
! AAGGAAATTAATGCAATACT+TGG - chr3_3:69978682-69978701 Msa0468320:intron 25.0%
! AGGAAATTAATGCAATACTT+GGG - chr3_3:69978683-69978702 Msa0468320:intron 25.0%
!! TATGAATGGATTTATAAGTC+AGG + chr3_3:69978804-69978823 None:intergenic 25.0%
!!! AGCCATCTATTTTAATCTAA+AGG + chr3_3:69979002-69979021 None:intergenic 25.0%
!! AATTTTATTGGGAGTGAAAA+AGG + chr3_3:69979058-69979077 None:intergenic 25.0%
! GTAACATTAAAACAAGATGA+AGG - chr3_3:69979229-69979248 Msa0468320:intron 25.0%
! AACATTAAAACAAGATGAAG+GGG - chr3_3:69979231-69979250 Msa0468320:intron 25.0%
! ATTGTAAAAATAGTGCAACT+AGG - chr3_3:69979268-69979287 Msa0468320:intron 25.0%
!! ATTTGAAATTCATTCGAAAC+AGG - chr3_3:69979388-69979407 Msa0468320:intron 25.0%
!! TTATGTTTGAGATGTGAATT+GGG + chr3_3:69979454-69979473 None:intergenic 25.0%
!! TTTATGTTTGAGATGTGAAT+TGG + chr3_3:69979455-69979474 None:intergenic 25.0%
! AACATAAAAAGACGTTGTTT+AGG - chr3_3:69979467-69979486 Msa0468320:intron 25.0%
! ACCATCAGATCAAAAATAAA+CGG + chr3_3:69979644-69979663 None:intergenic 25.0%
! ATGACATCTAGCATAAAAAA+TGG - chr3_3:69979954-69979973 Msa0468320:intron 25.0%
! ATTGAATTCAATGTTTCGAT+TGG + chr3_3:69980026-69980045 None:intergenic 25.0%
! CTTTCCATTTCTATTTGATA+AGG - chr3_3:69980654-69980673 Msa0468320:five_prime_UTR 25.0%
! GAAACCTTATCAAATAGAAA+TGG + chr3_3:69980661-69980680 None:intergenic 25.0%
! AAAAAACAATAGATGACCAA+AGG - chr3_3:69980694-69980713 Msa0468320:five_prime_UTR 25.0%
!! CAATTTTACTGAACTGTTTT+TGG - chr3_3:69980724-69980743 Msa0468320:five_prime_UTR 25.0%
AATATGTGAGGGACAAATAA+GGG + chr3_3:69976814-69976833 None:intergenic 30.0%
AAATATGTGAGGGACAAATA+AGG + chr3_3:69976815-69976834 None:intergenic 30.0%
AGAAAGAGAGAAATATGTGA+GGG + chr3_3:69976825-69976844 None:intergenic 30.0%
AAGAAAGAGAGAAATATGTG+AGG + chr3_3:69976826-69976845 None:intergenic 30.0%
!!! AGTTTTTTCTGTTGAGGTTT+TGG + chr3_3:69976892-69976911 None:intergenic 30.0%
! TTCGATTTGTAAATTCGATG+AGG + chr3_3:69976956-69976975 None:intergenic 30.0%
TTTACAAATCGAAATCGATG+GGG - chr3_3:69976963-69976982 Msa0468320:three_prime_UTR 30.0%
TATATTCGTGAAGAAACCTA+AGG - chr3_3:69976988-69977007 Msa0468320:three_prime_UTR 30.0%
!! GAAATTGAGGGTATTGAAAA+AGG + chr3_3:69977089-69977108 None:intergenic 30.0%
! CACTACTTCTCATTTTCATA+TGG - chr3_3:69977262-69977281 Msa0468320:CDS 30.0%
AACAACAGTAATCAATACAG+TGG + chr3_3:69977308-69977327 None:intergenic 30.0%
! TAACTCAGTGTTGTTAATCT+CGG + chr3_3:69977575-69977594 None:intergenic 30.0%
!!! GCACTTTTTTGGTTATTAAC+TGG - chr3_3:69977661-69977680 Msa0468320:intron 30.0%
GAAAGGAAAAAACTCAAGTA+AGG + chr3_3:69977751-69977770 None:intergenic 30.0%
GGAAAATAAAGAACACAGAA+AGG + chr3_3:69977768-69977787 None:intergenic 30.0%
TTCGTGAAAAGAAGAAAGAT+AGG - chr3_3:69977836-69977855 Msa0468320:intron 30.0%
TCGTGAAAAGAAGAAAGATA+GGG - chr3_3:69977837-69977856 Msa0468320:intron 30.0%
AGAGAGTGAGTCATTATTAT+TGG + chr3_3:69978019-69978038 None:intergenic 30.0%
TACCTGTTAGTATCTTTCTA+TGG - chr3_3:69978038-69978057 Msa0468320:intron 30.0%
TGAAGATGTTCAGAAACTTA+TGG - chr3_3:69978396-69978415 Msa0468320:intron 30.0%
AAGTTCAATGAATCTAGATG+TGG + chr3_3:69978507-69978526 None:intergenic 30.0%
! ATTGAGATTTTTGTTCCGTT+GGG - chr3_3:69978578-69978597 Msa0468320:intron 30.0%
CAAATATATTAACAGCCCAA+CGG + chr3_3:69978596-69978615 None:intergenic 30.0%
GGAAATTAATGCAATACTTG+GGG - chr3_3:69978684-69978703 Msa0468320:intron 30.0%
!! CTGGCTTTAATCATAGTATA+TGG - chr3_3:69978842-69978861 Msa0468320:intron 30.0%
!! GAAGGCGTGAAAATTTTATT+GGG + chr3_3:69979069-69979088 None:intergenic 30.0%
!! AGAAGGCGTGAAAATTTTAT+TGG + chr3_3:69979070-69979089 None:intergenic 30.0%
AAAGATCTGGTCATTAACAT+TGG + chr3_3:69979136-69979155 None:intergenic 30.0%
! TATGTTTGAGATGTGAATTG+GGG + chr3_3:69979453-69979472 None:intergenic 30.0%
! TAATGGAGGTTCTTTATTTG+TGG - chr3_3:69979875-69979894 Msa0468320:intron 30.0%
! AATGGAGGTTCTTTATTTGT+GGG - chr3_3:69979876-69979895 Msa0468320:intron 30.0%
CATGCAATAAGAATTTATGG+GGG + chr3_3:69980164-69980183 None:intergenic 30.0%
CCATGCAATAAGAATTTATG+GGG + chr3_3:69980165-69980184 None:intergenic 30.0%
GCCATGCAATAAGAATTTAT+GGG + chr3_3:69980166-69980185 None:intergenic 30.0%
TGCCATGCAATAAGAATTTA+TGG + chr3_3:69980167-69980186 None:intergenic 30.0%
!! TTTATTTTCTTTGGGAGAGA+GGG + chr3_3:69980387-69980406 None:intergenic 30.0%
!!! TTTTATTTTCTTTGGGAGAG+AGG + chr3_3:69980388-69980407 None:intergenic 30.0%
TATAGAAGTTGACTAACTGA+TGG - chr3_3:69980416-69980435 Msa0468320:intron 30.0%
GTAAAATTGTTTCACTCCTT+TGG + chr3_3:69980713-69980732 None:intergenic 30.0%
ATGCACACACTATTTATTTG+AGG - chr3_3:69980804-69980823 Msa0468320:five_prime_UTR 30.0%
ACTTGCTCAGTATCAACAAA+AGG - chr3_3:69977060-69977079 Msa0468320:intron 35.0%
CTAAATTTCCTCTATGCTAC+AGG + chr3_3:69977427-69977446 None:intergenic 35.0%
GGCATATCGTAGAACAATAT+AGG + chr3_3:69977454-69977473 None:intergenic 35.0%
ACACCAGATACAATCAAAGA+CGG + chr3_3:69977606-69977625 None:intergenic 35.0%
CTTTGATTGTATCTGGTGTA+TGG - chr3_3:69977607-69977626 Msa0468320:intron 35.0%
TGTATCTGGTGTATGGAAAA+TGG - chr3_3:69977614-69977633 Msa0468320:intron 35.0%
!! TGTATGGAAAATGGATTAGC+TGG - chr3_3:69977623-69977642 Msa0468320:intron 35.0%
!!! TGGTGATGATTGCACTTTTT+TGG - chr3_3:69977650-69977669 Msa0468320:intron 35.0%
TTTCTTCTTTAACGCCAACA+AGG + chr3_3:69977863-69977882 None:intergenic 35.0%
TTGCTCAACATTTATAAGCC+AGG + chr3_3:69977920-69977939 None:intergenic 35.0%
AGCCATAGAAAGATACTAAC+AGG + chr3_3:69978043-69978062 None:intergenic 35.0%
TGCTAACAGGTAGAGATTAT+CGG + chr3_3:69978112-69978131 None:intergenic 35.0%
TACCTGTTAGCATCTTTCTA+TGG - chr3_3:69978120-69978139 Msa0468320:intron 35.0%
ATCTCTTCTGAACAGGATAT+CGG + chr3_3:69978192-69978211 None:intergenic 35.0%
CTCAATTATCTCTTCTGAAC+AGG + chr3_3:69978199-69978218 None:intergenic 35.0%
! GGCTGTCTTTGAAAGTTTAA+AGG - chr3_3:69978330-69978349 Msa0468320:intron 35.0%
! GTCTTTGAAAGTTTAAAGGC+TGG - chr3_3:69978334-69978353 Msa0468320:intron 35.0%
! TTGATAAGCTTTTGCTTCAG+CGG + chr3_3:69978428-69978447 None:intergenic 35.0%
! TGAACTTGAGTGTACCTTTT+TGG - chr3_3:69978520-69978539 Msa0468320:intron 35.0%
! GAACTTGAGTGTACCTTTTT+GGG - chr3_3:69978521-69978540 Msa0468320:intron 35.0%
! AACTTGAGTGTACCTTTTTG+GGG - chr3_3:69978522-69978541 Msa0468320:intron 35.0%
! GATTGAGATTTTTGTTCCGT+TGG - chr3_3:69978577-69978596 Msa0468320:intron 35.0%
CGTTGGGCTGTTAATATATT+TGG - chr3_3:69978594-69978613 Msa0468320:intron 35.0%
! AATTCTCATCTACTTGCTGA+TGG - chr3_3:69978636-69978655 Msa0468320:intron 35.0%
ATTATCAGCAGAAGATGAAG+AGG - chr3_3:69978711-69978730 Msa0468320:intron 35.0%
! AGAAGATGAAGAGGAGATTT+TGG - chr3_3:69978720-69978739 Msa0468320:intron 35.0%
ACTGAAAAATCCATGTACCT+GGG + chr3_3:69978767-69978786 None:intergenic 35.0%
AACTGAAAAATCCATGTACC+TGG + chr3_3:69978768-69978787 None:intergenic 35.0%
ACAGCTGGAACAAATATGAA+TGG + chr3_3:69978818-69978837 None:intergenic 35.0%
AAAGCTGCAGAAAATCTGAA+TGG - chr3_3:69979558-69979577 Msa0468320:intron 35.0%
AAGCTGCAGAAAATCTGAAT+GGG - chr3_3:69979559-69979578 Msa0468320:intron 35.0%
!!! GCCGTTTATTTTTGATCTGA+TGG - chr3_3:69979640-69979659 Msa0468320:CDS 35.0%
TATCAGCCGAGACTAATTAA+TGG - chr3_3:69979858-69979877 Msa0468320:intron 35.0%
! GAACCTCCATTAATTAGTCT+CGG + chr3_3:69979867-69979886 None:intergenic 35.0%
ACTCATACCACAAGTAACTT+GGG + chr3_3:69979934-69979953 None:intergenic 35.0%
TACTCATACCACAAGTAACT+TGG + chr3_3:69979935-69979954 None:intergenic 35.0%
AACATTGCTTAGAGAAGAGA+TGG + chr3_3:69980057-69980076 None:intergenic 35.0%
CAATAAGAATTTATGGGGGA+AGG + chr3_3:69980160-69980179 None:intergenic 35.0%
CCCCATAAATTCTTATTGCA+TGG - chr3_3:69980162-69980181 Msa0468320:intron 35.0%
CAAAGCAGTTAACTGTGTTT+CGG + chr3_3:69980495-69980514 None:intergenic 35.0%
GAGGTATAATGACTTGAGAA+TGG - chr3_3:69980776-69980795 Msa0468320:five_prime_UTR 35.0%
CGAAGAAACCAAAAAGCAGT+GGG - chr3_3:69976731-69976750 Msa0468320:three_prime_UTR 40.0%
GAAGAAACCAAAAAGCAGTG+GGG - chr3_3:69976732-69976751 Msa0468320:three_prime_UTR 40.0%
CGTGAAGAAACCTAAGGTAA+CGG - chr3_3:69976994-69977013 Msa0468320:three_prime_UTR 40.0%
TTTGACGTGCACAATGAGAA+TGG + chr3_3:69977124-69977143 None:intergenic 40.0%
TCTATGCTACAGTGCTATAG+AGG + chr3_3:69977520-69977539 None:intergenic 40.0%
TCTATAGCACTGTAGCATAG+AGG - chr3_3:69977519-69977538 Msa0468320:intron 40.0%
AGACCGTCTTTGATTGTATC+TGG - chr3_3:69977600-69977619 Msa0468320:intron 40.0%
!! AAAATGGATTAGCTGGACGT+TGG - chr3_3:69977630-69977649 Msa0468320:intron 40.0%
CTTCAATAACAGCATCAAGC+TGG + chr3_3:69977789-69977808 None:intergenic 40.0%
! TATTGAAGCAAGTTGACACC+TGG - chr3_3:69977899-69977918 Msa0468320:intron 40.0%
CAGGTAGAGATTATCGGAAA+GGG + chr3_3:69978106-69978125 None:intergenic 40.0%
ACAGGTAGAGATTATCGGAA+AGG + chr3_3:69978107-69978126 None:intergenic 40.0%
AGCCATAGAAAGATGCTAAC+AGG + chr3_3:69978125-69978144 None:intergenic 40.0%
ACTCAATGGCTCAATAGACA+AGG + chr3_3:69978158-69978177 None:intergenic 40.0%
CGGAAAGGGAAAATACTCAA+TGG + chr3_3:69978172-69978191 None:intergenic 40.0%
TCTGAACAGGATATCGGAAA+GGG + chr3_3:69978186-69978205 None:intergenic 40.0%
TTCTGAACAGGATATCGGAA+AGG + chr3_3:69978187-69978206 None:intergenic 40.0%
TTTCAGAAGCAGCAAGAGTA+AGG + chr3_3:69978476-69978495 None:intergenic 40.0%
! ACTTGAGTGTACCTTTTTGG+GGG - chr3_3:69978523-69978542 Msa0468320:intron 40.0%
!! GTTAGGCATTGAAGTTGTAC+TGG - chr3_3:69978551-69978570 Msa0468320:intron 40.0%
TTTGGCAGAGTTTGAGAACT+TGG - chr3_3:69978738-69978757 Msa0468320:intron 40.0%
ATTTGTTCCAGCTGTACTAC+TGG - chr3_3:69978823-69978842 Msa0468320:intron 40.0%
ATTAAAGCCAGTAGTACAGC+TGG + chr3_3:69978833-69978852 None:intergenic 40.0%
GATCTGGTCATTAACATTGG+TGG + chr3_3:69979133-69979152 None:intergenic 40.0%
GCAGAAAATCTGAATGGGTA+TGG - chr3_3:69979564-69979583 Msa0468320:intron 40.0%
GAAAATCTGAATGGGTATGG+TGG - chr3_3:69979567-69979586 Msa0468320:intron 40.0%
!! TATGGTGGATAGACTAAGTG+AGG - chr3_3:69979582-69979601 Msa0468320:CDS 40.0%
ATAGACTAAGTGAGGCACAT+GGG - chr3_3:69979590-69979609 Msa0468320:CDS 40.0%
TACCACAAGTAACTTGGGTT+CGG + chr3_3:69979929-69979948 None:intergenic 40.0%
GAGCTAGTGATTGACTATAG+AGG - chr3_3:69980079-69980098 Msa0468320:intron 40.0%
! AACTTTTCGTCAACCTTGTC+AGG + chr3_3:69980258-69980277 None:intergenic 40.0%
TGACAAGGTTGACGAAAAGT+TGG - chr3_3:69980257-69980276 Msa0468320:intron 40.0%
TGATGTTGCAACAGTTATGG+AGG - chr3_3:69980440-69980459 Msa0468320:CDS 40.0%
AACAGTTATGGAGGAACCAT+TGG - chr3_3:69980449-69980468 Msa0468320:CDS 40.0%
AATGTTCTTCAAGCTGCCAA+TGG + chr3_3:69980468-69980487 None:intergenic 40.0%
TGAGGCAACAGAATTGATAG+TGG + chr3_3:69980558-69980577 None:intergenic 40.0%
AAAACTCCAGTAACTGCATG+AGG + chr3_3:69980576-69980595 None:intergenic 40.0%
!!! GCAGTTACTGGAGTTTTGAA+TGG - chr3_3:69980579-69980598 Msa0468320:five_prime_UTR 40.0%
AGTGACAGGAAACAACTCTC+TGG - chr3_3:69976699-69976718 Msa0468320:three_prime_UTR 45.0%
!!! CTGCTTTTTGGTTTCTTCGC+TGG + chr3_3:69976730-69976749 None:intergenic 45.0%
GCGAAGAAACCAAAAAGCAG+TGG - chr3_3:69976730-69976749 Msa0468320:three_prime_UTR 45.0%
!! CTATGAACCCCACTGCTTTT+TGG + chr3_3:69976742-69976761 None:intergenic 45.0%
CAAAAAGCAGTGGGGTTCAT+AGG - chr3_3:69976740-69976759 Msa0468320:three_prime_UTR 45.0%
AAACAGACCGAAACTGCTGT+TGG - chr3_3:69976860-69976879 Msa0468320:three_prime_UTR 45.0%
GTCGTTTCCAACAGCAGTTT+CGG + chr3_3:69976870-69976889 None:intergenic 45.0%
! GAAGAAAGATAGGGCCTTGT+TGG - chr3_3:69977846-69977865 Msa0468320:intron 45.0%
!! CGGAAAGGGAAAGTACTCAA+TGG + chr3_3:69978092-69978111 None:intergenic 45.0%
TGAACTGACAAGCAAGCAGA+AGG - chr3_3:69978309-69978328 Msa0468320:intron 45.0%
GTTTGAGAACTTGGAAACCC+AGG - chr3_3:69978747-69978766 Msa0468320:intron 45.0%
AACTTGGAAACCCAGGTACA+TGG - chr3_3:69978754-69978773 Msa0468320:CDS 45.0%
GAATTGGAGGTTGGAGAAGA+AGG + chr3_3:69979087-69979106 None:intergenic 45.0%
TGAAAATGGGGGAGTGGAAT+TGG + chr3_3:69979103-69979122 None:intergenic 45.0%
!! TGGTGGTGGTGGTTGAAAAT+GGG + chr3_3:69979116-69979135 None:intergenic 45.0%
!! TTGGTGGTGGTGGTTGAAAA+TGG + chr3_3:69979117-69979136 None:intergenic 45.0%
!! GTCATTAACATTGGTGGTGG+TGG + chr3_3:69979127-69979146 None:intergenic 45.0%
CTGGTCATTAACATTGGTGG+TGG + chr3_3:69979130-69979149 None:intergenic 45.0%
GATAGACTAAGTGAGGCACA+TGG - chr3_3:69979589-69979608 Msa0468320:CDS 45.0%
! GTGTCATTCCTCTAGCAACA+AGG + chr3_3:69979834-69979853 None:intergenic 45.0%
CAGCCGAGACTAATTAATGG+AGG - chr3_3:69979861-69979880 Msa0468320:intron 45.0%
GATCTTCGACTGCAAACTGT+TGG + chr3_3:69980212-69980231 None:intergenic 45.0%
CCTTGGTTGGAACATCAAGA+AGG + chr3_3:69980284-69980303 None:intergenic 45.0%
CCTTCTTGATGTTCCAACCA+AGG - chr3_3:69980281-69980300 Msa0468320:intron 45.0%
TACTTCAGCATCACTCGTAG+TGG + chr3_3:69980316-69980335 None:intergenic 45.0%
!! TTTTCTTTGGGAGAGAGGGA+CGG + chr3_3:69980383-69980402 None:intergenic 45.0%
GGCTGATGTTGCAACAGTTA+TGG - chr3_3:69980437-69980456 Msa0468320:intron 45.0%
GCAAACCAAAGTGTAGCATC+TGG - chr3_3:69980514-69980533 Msa0468320:CDS 45.0%
GAAGACCAGATGCTACACTT+TGG + chr3_3:69980522-69980541 None:intergenic 45.0%
!! ATATATATATATATATATAG+AGG + chr3_3:69978925-69978944 None:intergenic 5.0%
!!! TTTTTTATTTTATTTTCTTT+GGG + chr3_3:69980395-69980414 None:intergenic 5.0%
CGATCTACGTCCGTTACCTT+AGG + chr3_3:69977007-69977026 None:intergenic 50.0%
CTGAGCAAGTTTGCGTCTCT+GGG + chr3_3:69977050-69977069 None:intergenic 50.0%
ACTGAGCAAGTTTGCGTCTC+TGG + chr3_3:69977051-69977070 None:intergenic 50.0%
!! GAGTGTACCTTTTTGGGGGA+CGG - chr3_3:69978527-69978546 Msa0468320:intron 50.0%
!! AGTGTACCTTTTTGGGGGAC+GGG - chr3_3:69978528-69978547 Msa0468320:intron 50.0%
AAATGGGGGAGTGGAATTGG+AGG + chr3_3:69979100-69979119 None:intergenic 50.0%
!! GTGGTGGTGGTTGAAAATGG+GGG + chr3_3:69979114-69979133 None:intergenic 50.0%
!! GGTGGTGGTGGTTGAAAATG+GGG + chr3_3:69979115-69979134 None:intergenic 50.0%
GAGAGAGACCTTGTTGCTAG+AGG - chr3_3:69979823-69979842 Msa0468320:intron 50.0%
CACCGAACCCAAGTTACTTG+TGG - chr3_3:69979924-69979943 Msa0468320:intron 50.0%
AGCTGCATAATGTGACTGCC+TGG - chr3_3:69979989-69980008 Msa0468320:intron 50.0%
CGATTGGCAGCATAACTACC+AGG + chr3_3:69980010-69980029 None:intergenic 50.0%
TCCTAGCACAGTTCCTGACA+AGG - chr3_3:69980242-69980261 Msa0468320:intron 50.0%
ACCTTGTCAGGAACTGTGCT+AGG + chr3_3:69980246-69980265 None:intergenic 50.0%
GCATCACTCGTAGTGGTAAC+TGG + chr3_3:69980309-69980328 None:intergenic 50.0%
! TTTCTTTGGGAGAGAGGGAC+GGG + chr3_3:69980382-69980401 None:intergenic 50.0%
CTGTTGCCTCATGCAGTTAC+TGG - chr3_3:69980567-69980586 Msa0468320:five_prime_UTR 50.0%
GGCTGTAGCCTGTAGCATAG+AGG - chr3_3:69977416-69977435 Msa0468320:intron 55.0%
! GTGCTATAGAGGTGCAGCAG+CGG + chr3_3:69977509-69977528 None:intergenic 55.0%
!! GTGTACCTTTTTGGGGGACG+GGG - chr3_3:69978529-69978548 Msa0468320:intron 55.0%
GGTGGTTGAAAATGGGGGAG+TGG + chr3_3:69979109-69979128 None:intergenic 55.0%
GGAACTGTGCTAGGAGCTTC+AGG + chr3_3:69980237-69980256 None:intergenic 55.0%
GTGGTAACTGGTGCCTTGGT+TGG + chr3_3:69980297-69980316 None:intergenic 55.0%
CGTAGTGGTAACTGGTGCCT+TGG + chr3_3:69980301-69980320 None:intergenic 55.0%
! TTCTTTGGGAGAGAGGGACG+GGG + chr3_3:69980381-69980400 None:intergenic 55.0%
! TATAGAGGTGCAGCAGCGGC+TGG + chr3_3:69977505-69977524 None:intergenic 60.0%
CCTAACCCCGTCCCCCAAAA+AGG + chr3_3:69978537-69978556 None:intergenic 60.0%
!! CCTTTTTGGGGGACGGGGTT+AGG - chr3_3:69978534-69978553 Msa0468320:intron 60.0%
GGGGGAGTGGAATTGGAGGT+TGG + chr3_3:69979096-69979115 None:intergenic 60.0%
! TCTTTGGGAGAGAGGGACGG+GGG + chr3_3:69980380-69980399 None:intergenic 60.0%
! GGGGTGGGTTCAGAGGGATG+AGG + chr3_3:69980361-69980380 None:intergenic 65.0%
! GGGACGGGGGTGGGTTCAGA+GGG + chr3_3:69980367-69980386 None:intergenic 70.0%
! AGGGACGGGGGTGGGTTCAG+AGG + chr3_3:69980368-69980387 None:intergenic 70.0%
TGGGAGAGAGGGACGGGGGT+GGG + chr3_3:69980376-69980395 None:intergenic 70.0%
TTGGGAGAGAGGGACGGGGG+TGG + chr3_3:69980377-69980396 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 69976691 69980828 69976691 ID=Msa0468320;Name=Msa0468320
chr3_3 mRNA 69976691 69980828 69976691 ID=Msa0468320-mRNA-1;Parent=Msa0468320;Name=Msa0468320-mRNA-1;_AED=0.11;_eAED=0.11;_QI=289|1|1|1|1|1|6|349|217
chr3_3 exon 69976691 69977065 69976691 ID=Msa0468320-mRNA-1:exon:16749;Parent=Msa0468320-mRNA-1
chr3_3 exon 69977168 69977303 69977168 ID=Msa0468320-mRNA-1:exon:16748;Parent=Msa0468320-mRNA-1
chr3_3 exon 69978751 69978834 69978751 ID=Msa0468320-mRNA-1:exon:16747;Parent=Msa0468320-mRNA-1
chr3_3 exon 69979069 69979221 69979069 ID=Msa0468320-mRNA-1:exon:16746;Parent=Msa0468320-mRNA-1
chr3_3 exon 69979577 69979729 69979577 ID=Msa0468320-mRNA-1:exon:16745;Parent=Msa0468320-mRNA-1
chr3_3 exon 69980438 69980828 69980438 ID=Msa0468320-mRNA-1:exon:16744;Parent=Msa0468320-mRNA-1
chr3_3 five_prime_UTR 69980540 69980828 69980540 ID=Msa0468320-mRNA-1:five_prime_utr;Parent=Msa0468320-mRNA-1
chr3_3 CDS 69980438 69980539 69980438 ID=Msa0468320-mRNA-1:cds;Parent=Msa0468320-mRNA-1
chr3_3 CDS 69979577 69979729 69979577 ID=Msa0468320-mRNA-1:cds;Parent=Msa0468320-mRNA-1
chr3_3 CDS 69979069 69979221 69979069 ID=Msa0468320-mRNA-1:cds;Parent=Msa0468320-mRNA-1
chr3_3 CDS 69978751 69978834 69978751 ID=Msa0468320-mRNA-1:cds;Parent=Msa0468320-mRNA-1
chr3_3 CDS 69977168 69977303 69977168 ID=Msa0468320-mRNA-1:cds;Parent=Msa0468320-mRNA-1
chr3_3 CDS 69977040 69977065 69977040 ID=Msa0468320-mRNA-1:cds;Parent=Msa0468320-mRNA-1
chr3_3 three_prime_UTR 69976691 69977039 69976691 ID=Msa0468320-mRNA-1:three_prime_utr;Parent=Msa0468320-mRNA-1
Gene Sequence

>Msa0468320

ATGGGGAATATATTCGTGAAGAAACCTAAGGTAACGGACGTAGATCGTGCAATTCTAGCACTCAAGACCCAGAGACGCAAACTTGCTCAGTATCAACAAAAGCTTGATGCTGTTATTGAAGCAGAAAAGCAAGCTGCACGAGACTTGATTCGTGAAAAGAAGAAAGATAGGGCCTTGTTGGCGTTAAAGAAGAAAAAGACACAAGAAGAATTATTGAAGCAAGTTGACACCTGGCTTATAAATGTTGAGCAACAATTAGCAGATATTGAACTGACAAGCAAGCAGAAGGCTGTCTTTGAAAGTTTAAAGGCTGGTAGTAAAGCAATTGAAGCCATACAAAGTGAGATAAACATTGAAGATGTTCAGAAACTTATGGATGACACCGCTGAAGCAAAAGCTTATCAAGATGAAATTAATGCAATACTTGGGGAGCAATTATCAGCAGAAGATGAAGAGGAGATTTTGGCAGAGTTTGAGAACTTGGAAACCCAGTTTGCAGTCGAAGATCTTCCTGAAGCTCCTAGCACAGTTCCTGACAAGGTTGACGAAAAGTTGGACCTTCTTGATGTTCCAACCAAGGCACCAGTTACCACTACGAGTGATGCTGAAGTATCTATAAAAAGAAAAGTTATGGAGGAACCATTGGCAGCTTGA

Protein sequence

>Msa0468320

MGNIFVKKPKVTDVDRAILALKTQRRKLAQYQQKLDAVIEAEKQAARDLIREKKKDRALLALKKKKTQEELLKQVDTWLINVEQQLADIELTSKQKAVFESLKAGSKAIEAIQSEINIEDVQKLMDDTAEAKAYQDEINAILGEQLSAEDEEEILAEFENLETQFAVEDLPEAPSTVPDKVDEKLDLLDVPTKAPVTTTSDAEVSIKRKVMEEPLAA*