Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999860 | XP_003620614.2 | 93.617 | 94 | 6 | 0 | 46 | 139 | 34 | 127 | 5.08e-60 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999860 | sp|O02414|DYL1_HELCR | 44.444 | 90 | 48 | 1 | 47 | 136 | 1 | 88 | 7.15e-21 | 83.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999860 | A0A396HHX3 | 93.617 | 94 | 6 | 0 | 46 | 139 | 34 | 127 | 2.43e-60 | 191 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015140 | Msa0999860 | 0.807811 | 4.212773e-50 | -8.615850e-47 |
| Msa0042550 | Msa0999860 | 0.803687 | 3.095150e-49 | -8.615850e-47 |
| Msa0043500 | Msa0999860 | 0.817053 | 4.026242e-52 | -8.615850e-47 |
| Msa0043650 | Msa0999860 | 0.803471 | 3.431499e-49 | -8.615850e-47 |
| Msa0054820 | Msa0999860 | 0.804250 | 2.364204e-49 | -8.615850e-47 |
| Msa0057590 | Msa0999860 | 0.801540 | 8.581725e-49 | -8.615850e-47 |
| Msa0080830 | Msa0999860 | 0.808222 | 3.443354e-50 | -8.615850e-47 |
| Msa0096580 | Msa0999860 | 0.802895 | 4.515483e-49 | -8.615850e-47 |
| Msa0100160 | Msa0999860 | 0.808013 | 3.814618e-50 | -8.615850e-47 |
| Msa0103250 | Msa0999860 | 0.800365 | 1.491509e-48 | -8.615850e-47 |
| Msa0106620 | Msa0999860 | 0.813281 | 2.771021e-51 | -8.615850e-47 |
| Msa0106710 | Msa0999860 | 0.800722 | 1.261070e-48 | -8.615850e-47 |
| Msa0628420 | Msa0999860 | 0.804231 | 2.385461e-49 | -8.615850e-47 |
| Msa0652690 | Msa0999860 | 0.804219 | 2.399225e-49 | -8.615850e-47 |
| Msa0712560 | Msa0999860 | 0.803984 | 2.684727e-49 | -8.615850e-47 |
| Msa0750250 | Msa0999860 | 0.810775 | 9.746437e-51 | -8.615850e-47 |
| Msa0178510 | Msa0999860 | 0.808619 | 2.833983e-50 | -8.615850e-47 |
| Msa0192640 | Msa0999860 | 0.812391 | 4.341947e-51 | -8.615850e-47 |
| Msa0205010 | Msa0999860 | 0.805569 | 1.253176e-49 | -8.615850e-47 |
| Msa0378970 | Msa0999860 | 0.805438 | 1.334820e-49 | -8.615850e-47 |
| Msa0384670 | Msa0999860 | 0.804239 | 2.376328e-49 | -8.615850e-47 |
| Msa0392200 | Msa0999860 | 0.800034 | 1.741307e-48 | -8.615850e-47 |
| Msa0394690 | Msa0999860 | 0.814103 | 1.827213e-51 | -8.615850e-47 |
| Msa0468320 | Msa0999860 | 0.800369 | 1.488596e-48 | -8.615850e-47 |
| Msa0473330 | Msa0999860 | 0.814468 | 1.517409e-51 | -8.615850e-47 |
| Msa0480780 | Msa0999860 | 0.805211 | 1.489095e-49 | -8.615850e-47 |
| Msa0999860 | Msa1001990 | 0.992319 | 1.390336e-192 | -8.615850e-47 |
| Msa0999860 | Msa1034500 | 0.802177 | 6.347858e-49 | -8.615850e-47 |
| Msa0999860 | Msa1121260 | 0.806065 | 9.855948e-50 | -8.615850e-47 |
| Msa0999860 | Msa1129690 | 0.800299 | 1.538564e-48 | -8.615850e-47 |
| Msa0999860 | Msa1130530 | 0.803198 | 3.909377e-49 | -8.615850e-47 |
| Msa0999860 | Msa1163540 | 0.818870 | 1.564368e-52 | -8.615850e-47 |
| Msa0999860 | Msa1206650 | 0.800774 | 1.230623e-48 | -8.615850e-47 |
| Msa0999860 | Msa1264420 | 0.801375 | 9.277432e-49 | -8.615850e-47 |
| Msa0999860 | Msa1286550 | 0.815608 | 8.472014e-52 | -8.615850e-47 |
| Msa0999860 | Msa1357080 | 0.805187 | 1.506998e-49 | -8.615850e-47 |
| Msa0999860 | Msa1359560 | 0.816753 | 4.701732e-52 | -8.615850e-47 |
| Msa0999860 | Msa1381480 | 0.811651 | 6.291787e-51 | -8.615850e-47 |
| Msa0999860 | Msa1388960 | 0.967761 | 1.003112e-127 | -8.615850e-47 |
| Msa0999860 | Msa1407190 | 0.812120 | 4.974851e-51 | -8.615850e-47 |
| Msa0999860 | Msa1416370 | 0.819153 | 1.348922e-52 | -8.615850e-47 |
| Msa0999860 | Msa1424350 | 0.804281 | 2.328925e-49 | -8.615850e-47 |
| Msa0999860 | Msa1426570 | 0.801336 | 9.448168e-49 | -8.615850e-47 |
| Msa0999860 | Msa1432130 | 0.808856 | 2.521292e-50 | -8.615850e-47 |
| Msa0999860 | Msa1447180 | 0.805554 | 1.262088e-49 | -8.615850e-47 |
| Msa0312910 | Msa0999860 | 0.800142 | 1.655480e-48 | -8.615850e-47 |
| Msa0517640 | Msa0999860 | 0.804364 | 2.238019e-49 | -8.615850e-47 |
| Msa0518440 | Msa0999860 | 0.804534 | 2.062963e-49 | -8.615850e-47 |
| Msa0521670 | Msa0999860 | 0.815399 | 9.431663e-52 | -8.615850e-47 |
| Msa0532980 | Msa0999860 | 0.805961 | 1.036704e-49 | -8.615850e-47 |
| Msa0583500 | Msa0999860 | 0.808685 | 2.742307e-50 | -8.615850e-47 |
| Msa0866400 | Msa0999860 | 0.815697 | 8.096359e-52 | -8.615850e-47 |
| Msa0899990 | Msa0999860 | 0.937649 | 2.456080e-98 | -8.615850e-47 |
| Msa0945240 | Msa0999860 | 0.803945 | 2.736303e-49 | -8.615850e-47 |
| Msa0965370 | Msa0999860 | 0.941596 | 3.157563e-101 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999860 | MtrunA17_Chr6g0485891 | 93.617 | 94 | 6 | 0 | 46 | 139 | 34 | 127 | 4.67e-64 | 191 |
| Msa0999860 | MtrunA17_Chr2g0331651 | 74.444 | 90 | 23 | 0 | 47 | 136 | 1 | 90 | 9.27e-50 | 154 |
| Msa0999860 | MtrunA17_Chr8g0360861 | 51.087 | 92 | 45 | 0 | 47 | 138 | 1 | 92 | 4.46e-30 | 104 |
| Msa0999860 | MtrunA17_Chr4g0063491 | 45.570 | 79 | 43 | 0 | 57 | 135 | 159 | 237 | 1.15e-19 | 81.6 |
| Msa0999860 | MtrunA17_Chr4g0059791 | 44.444 | 81 | 44 | 1 | 58 | 137 | 222 | 302 | 1.06e-16 | 74.7 |
| Msa0999860 | MtrunA17_Chr8g0391451 | 36.905 | 84 | 51 | 1 | 54 | 135 | 56 | 139 | 2.69e-16 | 70.9 |
| Msa0999860 | MtrunA17_Chr4g0067531 | 36.471 | 85 | 52 | 1 | 51 | 135 | 46 | 128 | 3.01e-16 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0999860 | AT1G52245.1 | 76.344 | 93 | 22 | 0 | 47 | 139 | 1 | 93 | 9.47e-52 | 159 |
| Msa0999860 | AT3G16120.2 | 72.826 | 92 | 25 | 0 | 47 | 138 | 1 | 92 | 3.47e-47 | 148 |
| Msa0999860 | AT3G16120.1 | 72.826 | 92 | 25 | 0 | 47 | 138 | 1 | 92 | 3.47e-47 | 148 |
| Msa0999860 | AT4G27360.1 | 53.846 | 91 | 42 | 0 | 47 | 137 | 1 | 91 | 1.26e-31 | 108 |
| Msa0999860 | AT5G20110.1 | 46.154 | 78 | 42 | 0 | 58 | 135 | 123 | 200 | 3.12e-18 | 77.4 |
| Msa0999860 | AT4G15930.1 | 38.824 | 85 | 50 | 1 | 51 | 135 | 39 | 121 | 1.93e-17 | 73.6 |
| Msa0999860 | AT1G23220.1 | 36.471 | 85 | 53 | 1 | 54 | 137 | 38 | 122 | 2.68e-17 | 73.2 |
Find 23 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTATAGATTAGAAAATTA+AGG | 0.208962 | 6_4:-82328864 | None:intergenic |
| CAGGAGTTTGATAAGAATTA+TGG | 0.245035 | 6_4:+82328754 | Msa0999860:intron |
| TGTGTAGTAGGTTCCAATTT+TGG | 0.285821 | 6_4:+82328790 | Msa0999860:CDS |
| CTTATAGATTAGAAAATTAA+GGG | 0.370499 | 6_4:-82328863 | None:intergenic |
| TGTGATTGTAGATCAATTGC+TGG | 0.417111 | 6_4:+82328166 | Msa0999860:CDS |
| TGTGATTGTAGATCAATTGC+TGG | 0.453871 | 6_4:+82323182 | Msa0999860:CDS |
| TTGATAAGAATTATGGAAGT+GGG | 0.454204 | 6_4:+82328761 | Msa0999860:CDS |
| ATATAAAGGTCCCTGGTGTA+TGG | 0.455885 | 6_4:-82328825 | None:intergenic |
| CTAAAGATGTTGGAAGGAAA+AGG | 0.470654 | 6_4:+82323074 | None:intergenic |
| CTCAAGATGTTGGAAGGAAA+AGG | 0.486434 | 6_4:+82328058 | Msa0999860:intron |
| TTTGATAAGAATTATGGAAG+TGG | 0.490477 | 6_4:+82328760 | Msa0999860:CDS |
| AGTGGGTGGCAATGTGTAGT+AGG | 0.509524 | 6_4:+82328778 | Msa0999860:CDS |
| GCTTGAATTTGCATCTTCAA+AGG | 0.513495 | 6_4:-82323119 | None:intergenic |
| GCTTGAATTTGCATCTTCAA+AGG | 0.513495 | 6_4:-82328103 | None:intergenic |
| GAGCAACTCAAGATGTTGGA+AGG | 0.579416 | 6_4:+82328052 | Msa0999860:intron |
| AAGCAACTAAAGATGTTGGA+AGG | 0.603964 | 6_4:+82323068 | None:intergenic |
| AATTGCTGGTAATATCAAGA+AGG | 0.615321 | 6_4:+82323196 | Msa0999860:CDS |
| ATAAGAATTATGGAAGTGGG+TGG | 0.626217 | 6_4:+82328764 | Msa0999860:CDS |
| AGCTTGAGAAGCAAATGACA+TGG | 0.664039 | 6_4:-82323141 | None:intergenic |
| AGCTTGAGAAGCAAATGACA+TGG | 0.664039 | 6_4:-82328125 | None:intergenic |
| GCTCAAGGAGAACAATCAAG+AGG | 0.668274 | 6_4:-82328893 | None:intergenic |
| GATGTTGGAAGGAAAAGGTG+TGG | 0.730714 | 6_4:+82323079 | None:intergenic |
| GATGTTGGAAGGAAAAGGTG+TGG | 0.758385 | 6_4:+82328063 | Msa0999860:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTATTTTTTATTTAAT+AGG | + | chr6_4:82328577-82328596 | Msa0999860:intron | 0.0% |
| !! | AATAATTAGCATAAATTAAA+AGG | - | chr6_4:82323612-82323631 | None:intergenic | 10.0% |
| !!! | GTCAATAAAAATAAAAATTT+TGG | + | chr6_4:82323704-82323723 | Msa0999860:intron | 10.0% |
| !!! | CAATAAAAATAAAAATTTTG+GGG | + | chr6_4:82323706-82323725 | Msa0999860:intron | 10.0% |
| !! | TTTATATTAGCATATAAAAT+TGG | - | chr6_4:82326643-82326662 | None:intergenic | 10.0% |
| !! | TATGTGAAAAAAAATAAAAA+TGG | - | chr6_4:82326982-82327001 | None:intergenic | 10.0% |
| !! | GTTTATAAATACAAATAAAA+TGG | - | chr6_4:82327084-82327103 | None:intergenic | 10.0% |
| !! | TTCCAATTAATAATTAAATA+AGG | + | chr6_4:82328715-82328734 | Msa0999860:intron | 10.0% |
| !!! | AACCTTATTTAATTATTAAT+TGG | - | chr6_4:82328720-82328739 | None:intergenic | 10.0% |
| !! | TGAAAATATTAGAATGAATT+TGG | - | chr6_4:82323301-82323320 | None:intergenic | 15.0% |
| !! | CTAAACAAATTATTTGTATT+TGG | - | chr6_4:82323452-82323471 | None:intergenic | 15.0% |
| !!! | CAAATACAAATAATTTGTTT+AGG | + | chr6_4:82323450-82323469 | Msa0999860:intron | 15.0% |
| !! | TAATTATTTGCAAATGAATT+TGG | + | chr6_4:82323624-82323643 | Msa0999860:intron | 15.0% |
| !! | GTAGCTAAAAAAATATTATT+GGG | + | chr6_4:82323652-82323671 | Msa0999860:intron | 15.0% |
| !! | TAGCTAAAAAAATATTATTG+GGG | + | chr6_4:82323653-82323672 | Msa0999860:intron | 15.0% |
| !!! | TTTATTTTTATTGACTCATT+AGG | - | chr6_4:82323699-82323718 | None:intergenic | 15.0% |
| !! | ATTAAACTATATCATATCTA+AGG | + | chr6_4:82325287-82325306 | Msa0999860:intron | 15.0% |
| !! | GTGAAAAATTGTAATATATT+TGG | + | chr6_4:82325374-82325393 | Msa0999860:intron | 15.0% |
| !!! | AAACTAAAAACTTTTTTTAG+AGG | + | chr6_4:82326595-82326614 | Msa0999860:intron | 15.0% |
| !! | TGAAAAAAAATAAAAATGGT+TGG | - | chr6_4:82326978-82326997 | None:intergenic | 15.0% |
| !! | TTATTCAAGAATAACAAAAT+TGG | + | chr6_4:82327292-82327311 | Msa0999860:intron | 15.0% |
| !! | TATATCCTTATCAAAAAATT+CGG | + | chr6_4:82327856-82327875 | Msa0999860:intron | 15.0% |
| !! | AATATTTAAATTGAACTTTG+CGG | - | chr6_4:82328467-82328486 | None:intergenic | 15.0% |
| !! | AATTTAAATATTCCAAAACA+TGG | + | chr6_4:82328475-82328494 | Msa0999860:intron | 15.0% |
| !! | ATTTAAATATTCCAAAACAT+GGG | + | chr6_4:82328476-82328495 | Msa0999860:intron | 15.0% |
| !!! | TTTTTTATTTAATAGGATGA+AGG | + | chr6_4:82328584-82328603 | Msa0999860:intron | 15.0% |
| !!! | TTTTTATTTAATAGGATGAA+GGG | + | chr6_4:82328585-82328604 | Msa0999860:intron | 15.0% |
| !! | CTTATAGATTAGAAAATTAA+GGG | - | chr6_4:82328866-82328885 | None:intergenic | 15.0% |
| !!! | CTTAATTTTCTAATCTATAA+GGG | + | chr6_4:82328865-82328884 | Msa0999860:CDS | 15.0% |
| !!! | GAAAATCACTCAATTTTTTT+GGG | - | chr6_4:82323262-82323281 | None:intergenic | 20.0% |
| !! | AATGTACAATTAGTATAAAC+AGG | - | chr6_4:82323385-82323404 | None:intergenic | 20.0% |
| !! | GGTAGCTAAAAAAATATTAT+TGG | + | chr6_4:82323651-82323670 | Msa0999860:intron | 20.0% |
| !!! | TTTAACTAATAATTTTGTCC+TGG | + | chr6_4:82323977-82323996 | Msa0999860:intron | 20.0% |
| !! | ATTTGAATAGAATGGATAAA+TGG | + | chr6_4:82324039-82324058 | Msa0999860:intron | 20.0% |
| !!! | TTCATGTTTTACTTGAATTT+GGG | - | chr6_4:82324229-82324248 | None:intergenic | 20.0% |
| !!! | TTTCATGTTTTACTTGAATT+TGG | - | chr6_4:82324230-82324249 | None:intergenic | 20.0% |
| !! | AGTAGATAATGAAAAGTAAA+TGG | + | chr6_4:82324265-82324284 | Msa0999860:intron | 20.0% |
| !! | TATTATTCGTTATAATCTAG+TGG | - | chr6_4:82324722-82324741 | None:intergenic | 20.0% |
| !! | TGAATAAAAATCTTTGTCAT+TGG | - | chr6_4:82325044-82325063 | None:intergenic | 20.0% |
| !!! | TGATTGAAGTTTGTATATTT+TGG | - | chr6_4:82325479-82325498 | None:intergenic | 20.0% |
| !!! | TTTTTAACTGAAACATGAAT+TGG | - | chr6_4:82325646-82325665 | None:intergenic | 20.0% |
| !! | AAGCTGAAAATAAACTATAA+AGG | + | chr6_4:82325731-82325750 | Msa0999860:intron | 20.0% |
| !!! | CCACAAATTATATTTTTTAG+AGG | - | chr6_4:82326404-82326423 | None:intergenic | 20.0% |
| !!! | CCTCTAAAAAATATAATTTG+TGG | + | chr6_4:82326401-82326420 | Msa0999860:intron | 20.0% |
| !! | TGCTTATGAAAAATAATTGA+AGG | + | chr6_4:82326514-82326533 | Msa0999860:intron | 20.0% |
| !! | TAATATAAATTAACCCATCT+GGG | + | chr6_4:82326654-82326673 | Msa0999860:intron | 20.0% |
| !!! | TAGTAATTGACTTAAGATTT+TGG | + | chr6_4:82326683-82326702 | Msa0999860:intron | 20.0% |
| !!! | GATTCATGACTATATTTTAA+TGG | + | chr6_4:82327056-82327075 | Msa0999860:intron | 20.0% |
| !!! | TTTGAAAAGGTATGTAATAA+GGG | - | chr6_4:82327186-82327205 | None:intergenic | 20.0% |
| !!! | TTTTGAAAAGGTATGTAATA+AGG | - | chr6_4:82327187-82327206 | None:intergenic | 20.0% |
| !!! | ATCACACTAAAATTTTGAAA+AGG | - | chr6_4:82327199-82327218 | None:intergenic | 20.0% |
| !! | TGTTATTCTTGAATAAACTT+TGG | - | chr6_4:82327288-82327307 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTCTCTTCAAAG+TGG | - | chr6_4:82327757-82327776 | None:intergenic | 20.0% |
| !! | ATATCCTTATCAAAAAATTC+GGG | + | chr6_4:82327857-82327876 | Msa0999860:intron | 20.0% |
| !! | TTGAATTGAATGAATGATTA+AGG | - | chr6_4:82327914-82327933 | None:intergenic | 20.0% |
| !! | ATCATTCATTCAATTCAAAA+TGG | + | chr6_4:82327916-82327935 | Msa0999860:intron | 20.0% |
| !! | GGAAAATAACTCAAATTTAA+GGG | - | chr6_4:82328242-82328261 | None:intergenic | 20.0% |
| !! | TGGAAAATAACTCAAATTTA+AGG | - | chr6_4:82328243-82328262 | None:intergenic | 20.0% |
| !! | GAAAATATTAGAGATGAATT+TGG | - | chr6_4:82328280-82328299 | None:intergenic | 20.0% |
| !!! | TATTTTATGAGTTTGAAGTT+TGG | + | chr6_4:82328686-82328705 | Msa0999860:intron | 20.0% |
| !! | TAATTAAATAAGGTTGTGTT+TGG | + | chr6_4:82328725-82328744 | Msa0999860:intron | 20.0% |
| !! | CTCAAGAGAAAAATATATAA+AGG | - | chr6_4:82328842-82328861 | None:intergenic | 20.0% |
| !! | CCTTATAGATTAGAAAATTA+AGG | - | chr6_4:82328867-82328886 | None:intergenic | 20.0% |
| !!! | CCTTAATTTTCTAATCTATA+AGG | + | chr6_4:82328864-82328883 | Msa0999860:CDS | 20.0% |
| !!! | GGAAAATCACTCAATTTTTT+TGG | - | chr6_4:82323263-82323282 | None:intergenic | 25.0% |
| ! | TGAATTTGGATTTATGAGAT+TGG | - | chr6_4:82323287-82323306 | None:intergenic | 25.0% |
| ! | ACTAATTGTACATTTCTTTG+TGG | + | chr6_4:82323391-82323410 | Msa0999860:intron | 25.0% |
| ! | AAATTGTGTTGTGAGTAAAT+AGG | - | chr6_4:82323836-82323855 | None:intergenic | 25.0% |
| ! | TTTCTATTCAATAAAGCAAG+AGG | + | chr6_4:82323952-82323971 | Msa0999860:intron | 25.0% |
| ! | ATTCTATTCAAATGAACAAG+AGG | - | chr6_4:82324032-82324051 | None:intergenic | 25.0% |
| ! | TCTTGTTCATTTGAATAGAA+TGG | + | chr6_4:82324031-82324050 | Msa0999860:intron | 25.0% |
| ! | TCTTGTTCATTTGAATAGAA+CGG | + | chr6_4:82324031-82324050 | Msa0999860:intron | 25.0% |
| ! | AAAGTAAAAGGTGATTTACT+AGG | - | chr6_4:82324142-82324161 | None:intergenic | 25.0% |
| !! | AGTAAATCACCTTTTACTTT+AGG | + | chr6_4:82324142-82324161 | Msa0999860:intron | 25.0% |
| !! | TCATGTTTTACTTGAATTTG+GGG | - | chr6_4:82324228-82324247 | None:intergenic | 25.0% |
| ! | TAAATGGCTCAGAAAATAAT+GGG | + | chr6_4:82324281-82324300 | Msa0999860:intron | 25.0% |
| ! | AAAATCATCATACAAGAAGT+TGG | + | chr6_4:82324447-82324466 | Msa0999860:intron | 25.0% |
| !!! | ATGATGTTATTTTCCTTCTT+TGG | - | chr6_4:82324482-82324501 | None:intergenic | 25.0% |
| ! | CAATGTATCATCATATTCAT+TGG | + | chr6_4:82324550-82324569 | Msa0999860:intron | 25.0% |
| ! | CATATTCATTGGATAATTAC+AGG | + | chr6_4:82324561-82324580 | Msa0999860:intron | 25.0% |
| !! | TGGTTTGTATAATGTATCAA+TGG | - | chr6_4:82324695-82324714 | None:intergenic | 25.0% |
| ! | AGCCTTAAATTTATCATCAT+CGG | + | chr6_4:82324857-82324876 | Msa0999860:intron | 25.0% |
| !! | ATGTGTTTTGTGTCAAATTT+TGG | - | chr6_4:82325269-82325288 | None:intergenic | 25.0% |
| ! | ACTATAAAGGTAAAATCAAG+AGG | + | chr6_4:82325744-82325763 | Msa0999860:intron | 25.0% |
| ! | TATTCTTCAATTACCATCTT+AGG | - | chr6_4:82325780-82325799 | None:intergenic | 25.0% |
| ! | AAGATGGTAATTGAAGAATA+TGG | + | chr6_4:82325780-82325799 | Msa0999860:intron | 25.0% |
| !! | TAGAATTATTGGTGTTTGAT+AGG | - | chr6_4:82325867-82325886 | None:intergenic | 25.0% |
| ! | ACCAATAATTCTACGAAATT+AGG | + | chr6_4:82325874-82325893 | Msa0999860:intron | 25.0% |
| ! | TCCTAATTTCGTAGAATTAT+TGG | - | chr6_4:82325878-82325897 | None:intergenic | 25.0% |
| ! | GATTTATAGAGTTGAGTTTA+GGG | + | chr6_4:82325944-82325963 | Msa0999860:intron | 25.0% |
| ! | GAACAAAATTTAACTGTCAT+TGG | + | chr6_4:82326235-82326254 | Msa0999860:intron | 25.0% |
| ! | CTAATATAAATTAACCCATC+TGG | + | chr6_4:82326653-82326672 | Msa0999860:intron | 25.0% |
| ! | AAAACTATAGACTATGTGTA+CGG | - | chr6_4:82326850-82326869 | None:intergenic | 25.0% |
| ! | CTAAGAATAATCATTTGAGT+TGG | - | chr6_4:82327122-82327141 | None:intergenic | 25.0% |
| ! | TTCTTGAATAAACTTTGGAT+CGG | - | chr6_4:82327283-82327302 | None:intergenic | 25.0% |
| !! | TTGATCATGTTTTACTAAGA+GGG | - | chr6_4:82327489-82327508 | None:intergenic | 25.0% |
| !! | TTTGATCATGTTTTACTAAG+AGG | - | chr6_4:82327490-82327509 | None:intergenic | 25.0% |
| ! | GAAAAGGTAACATCAATATT+TGG | + | chr6_4:82327571-82327590 | Msa0999860:intron | 25.0% |
| ! | GAATGAATGATTAAGGAATT+TGG | - | chr6_4:82327907-82327926 | None:intergenic | 25.0% |
| ! | CAATAACAATAGAGAGAATT+TGG | + | chr6_4:82327999-82328018 | Msa0999860:intron | 25.0% |
| ! | TGAATTTGGATTTATGAGAT+TGG | - | chr6_4:82323287-82323306 | None:intergenic | 25.0% |
| !! | TTGAATTTATACCCATGTTT+TGG | - | chr6_4:82328490-82328509 | None:intergenic | 25.0% |
| !!! | CTATTTTTAGTATGACGAAT+CGG | + | chr6_4:82328529-82328548 | Msa0999860:intron | 25.0% |
| ! | ATTATCCTAACATTTGACTA+TGG | + | chr6_4:82328648-82328667 | Msa0999860:intron | 25.0% |
| ! | AAAAACCATAGTCAAATGTT+AGG | - | chr6_4:82328656-82328675 | None:intergenic | 25.0% |
| ! | TTTGATAAGAATTATGGAAG+TGG | + | chr6_4:82328760-82328779 | Msa0999860:CDS | 25.0% |
| ! | TTGATAAGAATTATGGAAGT+GGG | + | chr6_4:82328761-82328780 | Msa0999860:CDS | 25.0% |
| AATTGCTGGTAATATCAAGA+AGG | + | chr6_4:82323196-82323215 | Msa0999860:CDS | 30.0% | |
| ATTTGGATTTATGAGATTGG+TGG | - | chr6_4:82323284-82323303 | None:intergenic | 30.0% | |
| ! | AAGCTAGAGAAATTTTTACG+AGG | + | chr6_4:82323423-82323442 | Msa0999860:intron | 30.0% |
| ! | AGCTAGAGAAATTTTTACGA+GGG | + | chr6_4:82323424-82323443 | Msa0999860:intron | 30.0% |
| TTTGCAAATGAATTTGGTTG+AGG | + | chr6_4:82323630-82323649 | Msa0999860:intron | 30.0% | |
| GAATATTACGAAGATTCTTG+AGG | - | chr6_4:82323783-82323802 | None:intergenic | 30.0% | |
| ! | ACAATCCTTTGTTTCTCATA+TGG | + | chr6_4:82323861-82323880 | Msa0999860:intron | 30.0% |
| ! | CAATCCTTTGTTTCTCATAT+GGG | + | chr6_4:82323862-82323881 | Msa0999860:intron | 30.0% |
| TTCTTAATCTACCTTCTCAT+TGG | + | chr6_4:82324096-82324115 | Msa0999860:intron | 30.0% | |
| GTAAATGGCTCAGAAAATAA+TGG | + | chr6_4:82324280-82324299 | Msa0999860:intron | 30.0% | |
| TTCACTGAAATTGTGCATAT+CGG | + | chr6_4:82324610-82324629 | Msa0999860:intron | 30.0% | |
| ACATACATAAGACACTAGAT+TGG | + | chr6_4:82324650-82324669 | Msa0999860:intron | 30.0% | |
| GACCGATGATGATAAATTTA+AGG | - | chr6_4:82324862-82324881 | None:intergenic | 30.0% | |
| CTAATCTAATCTTCTCAATG+AGG | - | chr6_4:82325400-82325419 | None:intergenic | 30.0% | |
| ACCAACAATGAAAAATCAAG+AGG | + | chr6_4:82325523-82325542 | Msa0999860:intron | 30.0% | |
| ! | TCCTCTTGATTTTTCATTGT+TGG | - | chr6_4:82325527-82325546 | None:intergenic | 30.0% |
| ! | ACATTGATGATATCTGTGAT+AGG | - | chr6_4:82325623-82325642 | None:intergenic | 30.0% |
| AGGAATTGAAAAACCTAAGA+TGG | + | chr6_4:82325764-82325783 | Msa0999860:intron | 30.0% | |
| CATATCATATTGATGCGAAT+TGG | - | chr6_4:82325825-82325844 | None:intergenic | 30.0% | |
| GGATTTATAGAGTTGAGTTT+AGG | + | chr6_4:82325943-82325962 | Msa0999860:intron | 30.0% | |
| ! | GATTTCAAGAGTATAGTAAC+CGG | + | chr6_4:82326018-82326037 | Msa0999860:intron | 30.0% |
| ! | ATTTCAAGAGTATAGTAACC+GGG | + | chr6_4:82326019-82326038 | Msa0999860:intron | 30.0% |
| !!! | CCACTAACGTTTTTTCTTTT+GGG | - | chr6_4:82326055-82326074 | None:intergenic | 30.0% |
| !!! | ACCACTAACGTTTTTTCTTT+TGG | - | chr6_4:82326056-82326075 | None:intergenic | 30.0% |
| AAGAAAAAACGTTAGTGGTA+AGG | + | chr6_4:82326057-82326076 | Msa0999860:intron | 30.0% | |
| AGAAAAAACGTTAGTGGTAA+GGG | + | chr6_4:82326058-82326077 | Msa0999860:intron | 30.0% | |
| ! | TTTTGCTCTGACTTTTAACA+GGG | + | chr6_4:82326740-82326759 | Msa0999860:intron | 30.0% |
| AGATTCATCAGTGTTTGAAT+CGG | + | chr6_4:82326790-82326809 | Msa0999860:intron | 30.0% | |
| TAATTCTATACCATGTGACA+TGG | + | chr6_4:82327003-82327022 | Msa0999860:intron | 30.0% | |
| !! | GAATAATCATTTGAGTTGGA+GGG | - | chr6_4:82327118-82327137 | None:intergenic | 30.0% |
| !! | AGAATAATCATTTGAGTTGG+AGG | - | chr6_4:82327119-82327138 | None:intergenic | 30.0% |
| ! | ACAAAATTGGTTAGAAGTAC+TGG | + | chr6_4:82327305-82327324 | Msa0999860:intron | 30.0% |
| ATCTATCAACTTGTCTAAAG+TGG | - | chr6_4:82327425-82327444 | None:intergenic | 30.0% | |
| TCATAGACAAAAGAATTGAC+CGG | - | chr6_4:82327618-82327637 | None:intergenic | 30.0% | |
| !!! | GTAACCCGAATTTTTTGATA+AGG | - | chr6_4:82327864-82327883 | None:intergenic | 30.0% |
| !!! | AATTGCTGGTTTTATCAAGA+AGG | + | chr6_4:82328180-82328199 | Msa0999860:CDS | 30.0% |
| ATTTGGATTTATGAGATTGG+TGG | - | chr6_4:82323284-82323303 | None:intergenic | 30.0% | |
| TGTTGAAATTTCAACGAGTT+CGG | - | chr6_4:82328323-82328342 | None:intergenic | 30.0% | |
| CGATTCGTCATACTAAAAAT+AGG | - | chr6_4:82328531-82328550 | None:intergenic | 30.0% | |
| TAATAGGATGAAGGGTAATT+AGG | + | chr6_4:82328593-82328612 | Msa0999860:intron | 30.0% | |
| AATAGGATGAAGGGTAATTA+GGG | + | chr6_4:82328594-82328613 | Msa0999860:intron | 30.0% | |
| ! | TATGAGTTTGAAGTTTGGTT+TGG | + | chr6_4:82328691-82328710 | Msa0999860:intron | 30.0% |
| CAGGAGTTTGATAAGAATTA+TGG | + | chr6_4:82328754-82328773 | Msa0999860:intron | 30.0% | |
| GAAAAATATATAAAGGTCCC+TGG | - | chr6_4:82328835-82328854 | None:intergenic | 30.0% | |
| GCTTGAATTTGCATCTTCAA+AGG | - | chr6_4:82323122-82323141 | None:intergenic | 35.0% | |
| TGTGATTGTAGATCAATTGC+TGG | + | chr6_4:82323182-82323201 | Msa0999860:CDS | 35.0% | |
| CCATGGATACAAAAGTTTGT+TGG | - | chr6_4:82323358-82323377 | None:intergenic | 35.0% | |
| ! | CCAACAAACTTTTGTATCCA+TGG | + | chr6_4:82323355-82323374 | Msa0999860:intron | 35.0% |
| TAGTATAAACAGGAGATCCA+TGG | - | chr6_4:82323375-82323394 | None:intergenic | 35.0% | |
| ! | GCTAGAGAAATTTTTACGAG+GGG | + | chr6_4:82323425-82323444 | Msa0999860:intron | 35.0% |
| ! | CTAGAGAAATTTTTACGAGG+GGG | + | chr6_4:82323426-82323445 | Msa0999860:intron | 35.0% |
| GTAACCCATATGAGAAACAA+AGG | - | chr6_4:82323869-82323888 | None:intergenic | 35.0% | |
| ATAACGAATAGAATGACCAG+AGG | - | chr6_4:82323895-82323914 | None:intergenic | 35.0% | |
| ! | TCACCTTTTACTTTAGGCTT+TGG | + | chr6_4:82324148-82324167 | Msa0999860:intron | 35.0% |
| CATCCAAAGCCTAAAGTAAA+AGG | - | chr6_4:82324154-82324173 | None:intergenic | 35.0% | |
| TTGGCATTAACATCCAAAGA+AGG | + | chr6_4:82324466-82324485 | Msa0999860:intron | 35.0% | |
| CGTTATAATCTAGTGGCTTA+TGG | - | chr6_4:82324715-82324734 | None:intergenic | 35.0% | |
| !!! | TATGCTGTTTTATCCTTCCT+TGG | - | chr6_4:82325128-82325147 | None:intergenic | 35.0% |
| TGTCTGTGATGATATCTTGA+AGG | - | chr6_4:82325215-82325234 | None:intergenic | 35.0% | |
| AATCAAGAGGACTCAGAATA+TGG | + | chr6_4:82325536-82325555 | Msa0999860:intron | 35.0% | |
| ATCAAGAGGACTCAGAATAT+GGG | + | chr6_4:82325537-82325556 | Msa0999860:intron | 35.0% | |
| TGGTGATATAACAGAATGGT+CGG | + | chr6_4:82325560-82325579 | Msa0999860:intron | 35.0% | |
| CCCAAAAGAAAAAACGTTAG+TGG | + | chr6_4:82326052-82326071 | Msa0999860:intron | 35.0% | |
| ATAAATTAACCCATCTGGGT+TGG | + | chr6_4:82326658-82326677 | Msa0999860:intron | 35.0% | |
| ! | GTTTTGCTCTGACTTTTAAC+AGG | + | chr6_4:82326739-82326758 | Msa0999860:intron | 35.0% |
| ! | TTTGCTCTGACTTTTAACAG+GGG | + | chr6_4:82326741-82326760 | Msa0999860:intron | 35.0% |
| !! | CATAGTCTATAGTTTTGCCT+TGG | + | chr6_4:82326854-82326873 | Msa0999860:intron | 35.0% |
| !! | CAAATAAGATTAGCTCTAGC+AGG | - | chr6_4:82326918-82326937 | None:intergenic | 35.0% |
| TCTGCTTAACCCACTAAAAA+TGG | + | chr6_4:82327365-82327384 | Msa0999860:intron | 35.0% | |
| !!! | CTCATCGTTCCATTTTTAGT+GGG | - | chr6_4:82327377-82327396 | None:intergenic | 35.0% |
| !! | TCTCATCGTTCCATTTTTAG+TGG | - | chr6_4:82327378-82327397 | None:intergenic | 35.0% |
| ACTTGTACCAGGATAAGAAA+AGG | + | chr6_4:82327555-82327574 | Msa0999860:intron | 35.0% | |
| ! | GATGTTACCTTTTCTTATCC+TGG | - | chr6_4:82327565-82327584 | None:intergenic | 35.0% |
| CATAGACAAAAGAATTGACC+GGG | - | chr6_4:82327617-82327636 | None:intergenic | 35.0% | |
| !!! | TTATTTTGACCAGTGGAGAA+AGG | - | chr6_4:82327725-82327744 | None:intergenic | 35.0% |
| TTAAGGAATTTGGCAGCTTA+TGG | - | chr6_4:82327897-82327916 | None:intergenic | 35.0% | |
| GCTTGAATTTGCATCTTCAA+AGG | - | chr6_4:82323122-82323141 | None:intergenic | 35.0% | |
| TGTGATTGTAGATCAATTGC+TGG | + | chr6_4:82323182-82323201 | Msa0999860:CDS | 35.0% | |
| TAGCAAAGTTGAATTTGAGC+TGG | - | chr6_4:82328429-82328448 | None:intergenic | 35.0% | |
| AGGGTAATTAGGGAAATTCA+TGG | + | chr6_4:82328604-82328623 | Msa0999860:intron | 35.0% | |
| ! | AGGGAAATTCATGGTTTTTG+TGG | + | chr6_4:82328613-82328632 | Msa0999860:intron | 35.0% |
| ! | ATTCATGGTTTTTGTGGTGT+AGG | + | chr6_4:82328619-82328638 | Msa0999860:intron | 35.0% |
| !!! | AGGTTGTGTTTGGTTTTTTC+AGG | + | chr6_4:82328735-82328754 | Msa0999860:intron | 35.0% |
| ATAAGAATTATGGAAGTGGG+TGG | + | chr6_4:82328764-82328783 | Msa0999860:CDS | 35.0% | |
| ! | TGTGTAGTAGGTTCCAATTT+TGG | + | chr6_4:82328790-82328809 | Msa0999860:CDS | 35.0% |
| ! | GTGTAGTAGGTTCCAATTTT+GGG | + | chr6_4:82328791-82328810 | Msa0999860:CDS | 35.0% |
| !! | GCTAAAAAAGCACCCAAAAT+TGG | - | chr6_4:82328806-82328825 | None:intergenic | 35.0% |
| AGCTTGAGAAGCAAATGACA+TGG | - | chr6_4:82323144-82323163 | None:intergenic | 40.0% | |
| GTACATTTCTTTGTGGACAG+CGG | + | chr6_4:82323398-82323417 | Msa0999860:intron | 40.0% | |
| ! | TCATATGGGTTACAAACCTC+TGG | + | chr6_4:82323876-82323895 | Msa0999860:intron | 40.0% |
| AATTAGACCTCAGACATCCA+AGG | + | chr6_4:82324754-82324773 | Msa0999860:intron | 40.0% | |
| AATGCTGCTATATCCTTCCT+TGG | - | chr6_4:82324774-82324793 | None:intergenic | 40.0% | |
| GTTTCTCAAAACATTCGCAG+TGG | - | chr6_4:82324836-82324855 | None:intergenic | 40.0% | |
| GTTTCTCAAAACATTCGCAG+TGG | - | chr6_4:82324836-82324855 | None:intergenic | 40.0% | |
| TGGGTGGTGATATAACAGAA+TGG | + | chr6_4:82325556-82325575 | Msa0999860:intron | 40.0% | |
| ATATAACAGAATGGTCGGCA+AGG | + | chr6_4:82325565-82325584 | Msa0999860:intron | 40.0% | |
| TGAGTGAATTTGTGAAGGTG+AGG | + | chr6_4:82325916-82325935 | Msa0999860:intron | 40.0% | |
| GAGTGAATTTGTGAAGGTGA+GGG | + | chr6_4:82325917-82325936 | Msa0999860:intron | 40.0% | |
| AATTTGTGAAGGTGAGGGTT+AGG | + | chr6_4:82325922-82325941 | Msa0999860:intron | 40.0% | |
| ! | TATAGTAACCGGGTTGAGTT+TGG | + | chr6_4:82326029-82326048 | Msa0999860:intron | 40.0% |
| GTAAGGGCTTTCTCATATGT+GGG | + | chr6_4:82326074-82326093 | Msa0999860:intron | 40.0% | |
| GAACAGCGTTTAACTGTCAT+TGG | - | chr6_4:82326191-82326210 | None:intergenic | 40.0% | |
| ATTACTAGTCCAACCCAGAT+GGG | - | chr6_4:82326670-82326689 | None:intergenic | 40.0% | |
| AATTACTAGTCCAACCCAGA+TGG | - | chr6_4:82326671-82326690 | None:intergenic | 40.0% | |
| !! | GTCTATAGTTTTGCCTTGGT+TGG | + | chr6_4:82326858-82326877 | Msa0999860:intron | 40.0% |
| CTCTAACACCTGAGTTCTTA+AGG | - | chr6_4:82326885-82326904 | None:intergenic | 40.0% | |
| !! | ATAAGATTAGCTCTAGCAGG+AGG | - | chr6_4:82326915-82326934 | None:intergenic | 40.0% |
| CAGATCAACTTGAGTGGTAA+TGG | - | chr6_4:82327344-82327363 | None:intergenic | 40.0% | |
| GTGGAAAGAGCAAACTAGAT+AGG | - | chr6_4:82327406-82327425 | None:intergenic | 40.0% | |
| TCCAAATTCACACTTGTACC+AGG | + | chr6_4:82327544-82327563 | Msa0999860:intron | 40.0% | |
| TCCTGGTACAAGTGTGAATT+TGG | - | chr6_4:82327548-82327567 | None:intergenic | 40.0% | |
| TACCATAATCCTTTCTCCAC+TGG | + | chr6_4:82327713-82327732 | Msa0999860:intron | 40.0% | |
| !!! | CATGGTCTTATTTTGACCAG+TGG | - | chr6_4:82327732-82327751 | None:intergenic | 40.0% |
| TTTCTCTTCAAAGTGGAGCA+TGG | - | chr6_4:82327750-82327769 | None:intergenic | 40.0% | |
| AAGAGAGCAACTCAAGATGT+TGG | + | chr6_4:82328048-82328067 | Msa0999860:intron | 40.0% | |
| AGCTTGAGAAGCAAATGACA+TGG | - | chr6_4:82323144-82323163 | None:intergenic | 40.0% | |
| !!! | TGCTTTTTTAGCCATACACC+AGG | + | chr6_4:82328814-82328833 | Msa0999860:CDS | 40.0% |
| !!! | GCTTTTTTAGCCATACACCA+GGG | + | chr6_4:82328815-82328834 | Msa0999860:CDS | 40.0% |
| ATATAAAGGTCCCTGGTGTA+TGG | - | chr6_4:82328828-82328847 | None:intergenic | 40.0% | |
| TGTTGGAATCTCAGCGAGTT+CGG | - | chr6_4:82323341-82323360 | None:intergenic | 45.0% | |
| TTGAAAGGATGGGGTAGCTT+TGG | - | chr6_4:82323735-82323754 | None:intergenic | 45.0% | |
| AAGCTACCCCATCCTTTCAA+AGG | + | chr6_4:82323735-82323754 | Msa0999860:intron | 45.0% | |
| AGCTACCCCATCCTTTCAAA+GGG | + | chr6_4:82323736-82323755 | Msa0999860:intron | 45.0% | |
| ! | CGATTCCCTTTGAAAGGATG+GGG | - | chr6_4:82323744-82323763 | None:intergenic | 45.0% |
| ! | GCGATTCCCTTTGAAAGGAT+GGG | - | chr6_4:82323745-82323764 | None:intergenic | 45.0% |
| ! | TCTTGAGGTGTCCACAAACA+GGG | - | chr6_4:82323768-82323787 | None:intergenic | 45.0% |
| ! | TTCTTGAGGTGTCCACAAAC+AGG | - | chr6_4:82323769-82323788 | None:intergenic | 45.0% |
| GACATACTTTCTTCAGCACC+AGG | - | chr6_4:82323998-82324017 | None:intergenic | 45.0% | |
| ATCTACCTTCTCATTGGCGT+TGG | + | chr6_4:82324102-82324121 | Msa0999860:intron | 45.0% | |
| AAACACCAACGCCAATGAGA+AGG | - | chr6_4:82324110-82324129 | None:intergenic | 45.0% | |
| ! | TCAGCACTGAAACATCAGAG+TGG | + | chr6_4:82324317-82324336 | Msa0999860:intron | 45.0% |
| ! | ACATCATTAGCTCTCAAGCC+TGG | + | chr6_4:82324495-82324514 | Msa0999860:intron | 45.0% |
| TATCCTTCCTTGGATGTCTG+AGG | - | chr6_4:82324764-82324783 | None:intergenic | 45.0% | |
| ATCGTTGTCTCAGACATCCA+AGG | + | chr6_4:82325108-82325127 | Msa0999860:intron | 45.0% | |
| TTGTCTCAGACATCCAAGGA+AGG | + | chr6_4:82325112-82325131 | Msa0999860:intron | 45.0% | |
| ACAGCATAAACTCTCAAGCC+TGG | + | chr6_4:82325140-82325159 | Msa0999860:intron | 45.0% | |
| AAGAGGACTCAGAATATGGG+TGG | + | chr6_4:82325540-82325559 | Msa0999860:intron | 45.0% | |
| ATAGGTCTCGTTCGTCGTAA+TGG | - | chr6_4:82325605-82325624 | None:intergenic | 45.0% | |
| GCAGCTGAGTGAATTTGTGA+AGG | + | chr6_4:82325911-82325930 | Msa0999860:intron | 45.0% | |
| CATACGCGTAGGTTAATTCG+CGG | - | chr6_4:82325998-82326017 | None:intergenic | 45.0% | |
| CTCTTGAAATCCATACGCGT+AGG | - | chr6_4:82326009-82326028 | None:intergenic | 45.0% | |
| GGTAAGGGCTTTCTCATATG+TGG | + | chr6_4:82326073-82326092 | Msa0999860:intron | 45.0% | |
| GAGTTCTTAAGGACCAACCA+AGG | - | chr6_4:82326874-82326893 | None:intergenic | 45.0% | |
| ! | TGGTTGGTCCTTAAGAACTC+AGG | + | chr6_4:82326874-82326893 | Msa0999860:intron | 45.0% |
| GCAGATCAGATCAACTTGAG+TGG | - | chr6_4:82327350-82327369 | None:intergenic | 45.0% | |
| AAAAGAATTGACCGGGTGGT+TGG | - | chr6_4:82327610-82327629 | None:intergenic | 45.0% | |
| AGACAAAAGAATTGACCGGG+TGG | - | chr6_4:82327614-82327633 | None:intergenic | 45.0% | |
| GACCAGTGGAGAAAGGATTA+TGG | - | chr6_4:82327718-82327737 | None:intergenic | 45.0% | |
| GAGCAACTCAAGATGTTGGA+AGG | + | chr6_4:82328052-82328071 | Msa0999860:intron | 45.0% | |
| GTATGACGAATCGGAAGTCA+TGG | + | chr6_4:82328538-82328557 | Msa0999860:intron | 45.0% | |
| !!! | TCAATAAAAATAAAAATTTT+GGG | + | chr6_4:82323705-82323724 | Msa0999860:intron | 5.0% |
| !!! | AAAGTTAATTAAAATTTTAT+TGG | - | chr6_4:82324372-82324391 | None:intergenic | 5.0% |
| !!! | ATTTTAAATATTATAATCAT+TGG | + | chr6_4:82325453-82325472 | Msa0999860:intron | 5.0% |
| !!! | TTTTTTAAAGATTTTAAATT+CGG | - | chr6_4:82326819-82326838 | None:intergenic | 5.0% |
| ! | GGCGATTCCCTTTGAAAGGA+TGG | - | chr6_4:82323746-82323765 | None:intergenic | 50.0% |
| ! | CTTGAGGTGTCCACAAACAG+GGG | - | chr6_4:82323767-82323786 | None:intergenic | 50.0% |
| ! | TTAGCTCTCAAGCCTGGCAA+AGG | + | chr6_4:82324501-82324520 | Msa0999860:intron | 50.0% |
| CATTTGCCTTTGCCTTTGCC+AGG | - | chr6_4:82324516-82324535 | None:intergenic | 50.0% | |
| AGACCTCAGACATCCAAGGA+AGG | + | chr6_4:82324758-82324777 | Msa0999860:intron | 50.0% | |
| GCAGCATTAACTCTCAAGCC+TGG | + | chr6_4:82324786-82324805 | Msa0999860:intron | 50.0% | |
| TAACTCTCAAGCCTGGCGAA+AGG | + | chr6_4:82324793-82324812 | Msa0999860:intron | 50.0% | |
| AAGAACTTTCGCCTTTCGCC+AGG | - | chr6_4:82324807-82324826 | None:intergenic | 50.0% | |
| TGGCGAAAGGCGAAAGTTCT+TGG | + | chr6_4:82324806-82324825 | Msa0999860:intron | 50.0% | |
| GGCGAAAGGCGAAAGTTCTT+GGG | + | chr6_4:82324807-82324826 | Msa0999860:intron | 50.0% | |
| GAAAGGCGAAAGTTCTTGGG+CGG | + | chr6_4:82324810-82324829 | Msa0999860:intron | 50.0% | |
| TAAACTCTCAAGCCTGGCGA+AGG | + | chr6_4:82325146-82325165 | Msa0999860:intron | 50.0% | |
| TAAGAACTTTCGCCTTCGCC+AGG | - | chr6_4:82325161-82325180 | None:intergenic | 50.0% | |
| TGGCGAAGGCGAAAGTTCTT+AGG | + | chr6_4:82325160-82325179 | Msa0999860:intron | 50.0% | |
| CGAAGGCGAAAGTTCTTAGG+CGG | + | chr6_4:82325163-82325182 | Msa0999860:intron | 50.0% | |
| TTAATTCGCGGCGCAACTCT+TGG | - | chr6_4:82325986-82326005 | None:intergenic | 50.0% | |
| CGCGAATTAACCTACGCGTA+TGG | + | chr6_4:82325996-82326015 | Msa0999860:intron | 50.0% | |
| ! | CTTTTGGGCCAAACTCAACC+CGG | - | chr6_4:82326040-82326059 | None:intergenic | 50.0% |
| ! | TGACTTTTAACAGGGGCCCT+GGG | + | chr6_4:82326748-82326767 | Msa0999860:intron | 50.0% |
| TCAGTCAATCCTACAGCCCA+GGG | - | chr6_4:82326767-82326786 | None:intergenic | 50.0% | |
| ATCAGTCAATCCTACAGCCC+AGG | - | chr6_4:82326768-82326787 | None:intergenic | 50.0% | |
| CGTACTCGAGTTCGATTACG+AGG | - | chr6_4:82327523-82327542 | None:intergenic | 50.0% | |
| AGTGGGTGGCAATGTGTAGT+AGG | + | chr6_4:82328778-82328797 | Msa0999860:CDS | 50.0% | |
| CAGGGGCGATTCCCTTTGAA+AGG | - | chr6_4:82323750-82323769 | None:intergenic | 55.0% | |
| AAGGGAATCGCCCCTGTTTG+TGG | + | chr6_4:82323754-82323773 | Msa0999860:intron | 55.0% | |
| CTCAAGCCTGGCAAAGGCAA+AGG | + | chr6_4:82324507-82324526 | Msa0999860:intron | 55.0% | |
| ! | CTGACTTTTAACAGGGGCCC+TGG | + | chr6_4:82326747-82326766 | Msa0999860:intron | 55.0% |
| ATGTGACATGGCCTCGCGAA+GGG | + | chr6_4:82327015-82327034 | Msa0999860:intron | 55.0% | |
| CTTCGCGAGGCCATGTCACA+TGG | - | chr6_4:82327016-82327035 | None:intergenic | 60.0% | |
| CATGTGACATGGCCTCGCGA+AGG | + | chr6_4:82327014-82327033 | Msa0999860:intron | 60.0% | |
| GATCCTCTGATCCCTTCGCG+AGG | - | chr6_4:82327029-82327048 | None:intergenic | 60.0% | |
| GCGCTAAGCTTCCAACCACC+CGG | + | chr6_4:82327596-82327615 | Msa0999860:intron | 60.0% | |
| TAACAGGGGCCCTGGGCTGT+AGG | + | chr6_4:82326755-82326774 | Msa0999860:intron | 65.0% | |
| TGGCCTCGCGAAGGGATCAG+AGG | + | chr6_4:82327023-82327042 | Msa0999860:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 82323080 | 82328900 | 82323080 | ID=Msa0999860;Name=Msa0999860 |
| chr6_4 | mRNA | 82323080 | 82328900 | 82323080 | ID=Msa0999860-mRNA-1;Parent=Msa0999860;Name=Msa0999860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|0.5|1|3|0|139 |
| chr6_4 | exon | 82323080 | 82323217 | 82323080 | ID=Msa0999860-mRNA-1:exon:15797;Parent=Msa0999860-mRNA-1 |
| chr6_4 | exon | 82328064 | 82328201 | 82328064 | ID=Msa0999860-mRNA-1:exon:15798;Parent=Msa0999860-mRNA-1 |
| chr6_4 | exon | 82328757 | 82328900 | 82328757 | ID=Msa0999860-mRNA-1:exon:15799;Parent=Msa0999860-mRNA-1 |
| chr6_4 | CDS | 82323080 | 82323217 | 82323080 | ID=Msa0999860-mRNA-1:cds;Parent=Msa0999860-mRNA-1 |
| chr6_4 | CDS | 82328064 | 82328201 | 82328064 | ID=Msa0999860-mRNA-1:cds;Parent=Msa0999860-mRNA-1 |
| chr6_4 | CDS | 82328757 | 82328900 | 82328757 | ID=Msa0999860-mRNA-1:cds;Parent=Msa0999860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
