Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0608700 | XP_003607565.1 | 97.534 | 365 | 5 | 1 | 1 | 361 | 1 | 365 | 0.0 | 748 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0608700 | sp|Q9SIN2|TBL39_ARATH | 63.855 | 332 | 119 | 1 | 29 | 359 | 33 | 364 | 1.77e-165 | 469 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0608700 | G7JV22 | 97.534 | 365 | 5 | 1 | 1 | 361 | 1 | 365 | 0.0 | 748 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0029380 | Msa0608700 | 0.822323 | 2.518530e-53 | -8.615850e-47 |
Msa0077340 | Msa0608700 | 0.812076 | 5.085204e-51 | -8.615850e-47 |
Msa0077560 | Msa0608700 | 0.830793 | 2.404552e-55 | -8.615850e-47 |
Msa0089980 | Msa0608700 | 0.810616 | 1.055223e-50 | -8.615850e-47 |
Msa0090010 | Msa0608700 | 0.808995 | 2.354016e-50 | -8.615850e-47 |
Msa0608700 | Msa0624900 | 0.815450 | 9.186096e-52 | -8.615850e-47 |
Msa0608700 | Msa0626270 | 0.800046 | 1.732019e-48 | -8.615850e-47 |
Msa0608700 | Msa0626460 | 0.819368 | 1.204894e-52 | -8.615850e-47 |
Msa0608700 | Msa0641990 | 0.807365 | 5.237812e-50 | -8.615850e-47 |
Msa0608700 | Msa0649200 | 0.988113 | 9.221330e-173 | -8.615850e-47 |
Msa0608700 | Msa0664540 | 0.801056 | 1.078000e-48 | -8.615850e-47 |
Msa0608700 | Msa0703950 | 0.837279 | 5.709869e-57 | -8.615850e-47 |
Msa0608700 | Msa0721020 | 0.826682 | 2.372737e-54 | -8.615850e-47 |
Msa0608700 | Msa0769300 | 0.810477 | 1.130386e-50 | -8.615850e-47 |
Msa0608700 | Msa0804250 | 0.826342 | 2.859453e-54 | -8.615850e-47 |
Msa0608700 | Msa0815970 | 0.827379 | 1.616405e-54 | -8.615850e-47 |
Msa0608700 | Msa0833530 | 0.818940 | 1.507530e-52 | -8.615850e-47 |
Msa0608700 | Msa0878280 | 0.807665 | 4.523828e-50 | -8.615850e-47 |
Msa0608700 | Msa0907710 | 0.828733 | 7.629413e-55 | -8.615850e-47 |
Msa0608700 | Msa0940560 | 0.813113 | 3.016000e-51 | -8.615850e-47 |
Msa0608700 | Msa0977100 | 0.807401 | 5.147461e-50 | -8.615850e-47 |
Msa0608700 | Msa1002350 | 0.834056 | 3.737836e-56 | -8.615850e-47 |
Msa0608700 | Msa1045230 | 0.805998 | 1.018472e-49 | -8.615850e-47 |
Msa0608700 | Msa1074900 | 0.803733 | 3.028558e-49 | -8.615850e-47 |
Msa0608700 | Msa1145300 | 0.815661 | 8.245643e-52 | -8.615850e-47 |
Msa0608700 | Msa1165090 | 0.808035 | 3.774188e-50 | -8.615850e-47 |
Msa0608700 | Msa1171290 | 0.803503 | 3.379107e-49 | -8.615850e-47 |
Msa0608700 | Msa1207330 | 0.822257 | 2.608839e-53 | -8.615850e-47 |
Msa0608700 | Msa1321550 | 0.816581 | 5.137381e-52 | -8.615850e-47 |
Msa0608700 | Msa1341840 | 0.814959 | 1.181352e-51 | -8.615850e-47 |
Msa0608700 | Msa1345670 | 0.820125 | 8.092634e-53 | -8.615850e-47 |
Msa0608700 | Msa1387440 | 0.800564 | 1.358761e-48 | -8.615850e-47 |
Msa0608700 | Msa1391500 | 0.801356 | 9.360948e-49 | -8.615850e-47 |
Msa0608700 | Msa1398810 | 0.811459 | 6.926737e-51 | -8.615850e-47 |
Msa0608700 | Msa1403710 | 0.803116 | 4.065213e-49 | -8.615850e-47 |
Msa0608700 | Msa1407840 | 0.809187 | 2.142315e-50 | -8.615850e-47 |
Msa0608700 | Msa1412000 | 0.817820 | 2.703778e-52 | -8.615850e-47 |
Msa0608700 | Msa1437810 | 0.805061 | 1.600981e-49 | -8.615850e-47 |
Msa0608700 | Msa1439410 | 0.808624 | 2.825975e-50 | -8.615850e-47 |
Msa0608700 | Msa1454500 | 0.802605 | 5.182647e-49 | -8.615850e-47 |
Msa0608700 | Msa1461370 | 0.810429 | 1.157884e-50 | -8.615850e-47 |
Msa0124910 | Msa0608700 | 0.835183 | 1.946062e-56 | -8.615850e-47 |
Msa0142430 | Msa0608700 | 0.801327 | 9.487457e-49 | -8.615850e-47 |
Msa0169410 | Msa0608700 | 0.834448 | 2.980461e-56 | -8.615850e-47 |
Msa0184500 | Msa0608700 | 0.810857 | 9.356183e-51 | -8.615850e-47 |
Msa0225480 | Msa0608700 | 0.825096 | 5.647458e-54 | -8.615850e-47 |
Msa0408380 | Msa0608700 | 0.808661 | 2.775474e-50 | -8.615850e-47 |
Msa0412790 | Msa0608700 | 0.825285 | 5.096112e-54 | -8.615850e-47 |
Msa0414880 | Msa0608700 | 0.809231 | 2.095403e-50 | -8.615850e-47 |
Msa0269210 | Msa0608700 | 0.814252 | 1.693772e-51 | -8.615850e-47 |
Msa0279850 | Msa0608700 | 0.801146 | 1.033187e-48 | -8.615850e-47 |
Msa0307270 | Msa0608700 | 0.809180 | 2.148965e-50 | -8.615850e-47 |
Msa0361910 | Msa0608700 | 0.825541 | 4.430689e-54 | -8.615850e-47 |
Msa0500650 | Msa0608700 | 0.803210 | 3.885498e-49 | -8.615850e-47 |
Msa0502510 | Msa0608700 | 0.805541 | 1.270169e-49 | -8.615850e-47 |
Msa0555190 | Msa0608700 | 0.869755 | 2.440495e-66 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0608700 | MtrunA17_Chr4g0041011 | 97.534 | 365 | 5 | 1 | 1 | 361 | 1 | 365 | 0.0 | 748 |
Msa0608700 | MtrunA17_Chr2g0325481 | 75.783 | 351 | 77 | 1 | 17 | 359 | 16 | 366 | 0.0 | 566 |
Msa0608700 | MtrunA17_Chr2g0283581 | 59.322 | 354 | 139 | 4 | 10 | 360 | 8 | 359 | 5.92e-154 | 437 |
Msa0608700 | MtrunA17_Chr4g0045951 | 59.748 | 318 | 127 | 1 | 43 | 359 | 45 | 362 | 1.60e-142 | 408 |
Msa0608700 | MtrunA17_Chr4g0045941 | 58.255 | 321 | 133 | 1 | 40 | 359 | 30 | 350 | 7.51e-140 | 401 |
Msa0608700 | MtrunA17_Chr3g0097891 | 55.937 | 320 | 138 | 2 | 43 | 359 | 31 | 350 | 3.08e-135 | 389 |
Msa0608700 | MtrunA17_Chr2g0314801 | 56.289 | 318 | 135 | 3 | 43 | 356 | 33 | 350 | 9.60e-132 | 380 |
Msa0608700 | MtrunA17_Chr5g0413851 | 51.532 | 359 | 159 | 4 | 4 | 359 | 13 | 359 | 1.42e-130 | 378 |
Msa0608700 | MtrunA17_Chr3g0085071 | 51.351 | 333 | 155 | 2 | 30 | 361 | 39 | 365 | 1.01e-128 | 373 |
Msa0608700 | MtrunA17_Chr3g0091031 | 50.000 | 332 | 159 | 2 | 31 | 361 | 25 | 350 | 8.15e-125 | 363 |
Msa0608700 | MtrunA17_Chr3g0085081 | 49.699 | 332 | 160 | 2 | 31 | 361 | 25 | 350 | 9.58e-124 | 360 |
Msa0608700 | MtrunA17_Chr5g0430371 | 46.499 | 357 | 166 | 5 | 28 | 359 | 43 | 399 | 2.76e-117 | 345 |
Msa0608700 | MtrunA17_Chr3g0105301 | 49.254 | 335 | 153 | 4 | 42 | 359 | 42 | 376 | 1.31e-116 | 343 |
Msa0608700 | MtrunA17_Chr2g0314791 | 47.401 | 327 | 152 | 6 | 43 | 359 | 29 | 345 | 3.09e-105 | 313 |
Msa0608700 | MtrunA17_Chr1g0175671 | 38.859 | 368 | 198 | 6 | 16 | 359 | 145 | 509 | 1.46e-88 | 276 |
Msa0608700 | MtrunA17_Chr1g0171171 | 39.881 | 336 | 180 | 7 | 38 | 359 | 48 | 375 | 5.99e-88 | 270 |
Msa0608700 | MtrunA17_Chr7g0258851 | 40.643 | 342 | 176 | 7 | 43 | 359 | 248 | 587 | 4.65e-86 | 271 |
Msa0608700 | MtrunA17_Chr1g0210771 | 36.842 | 361 | 194 | 10 | 23 | 359 | 32 | 382 | 1.02e-83 | 259 |
Msa0608700 | MtrunA17_Chr4g0068111 | 37.901 | 343 | 186 | 8 | 42 | 359 | 113 | 453 | 4.33e-80 | 252 |
Msa0608700 | MtrunA17_Chr5g0437291 | 38.329 | 347 | 184 | 9 | 43 | 359 | 165 | 511 | 5.13e-80 | 253 |
Msa0608700 | MtrunA17_Chr4g0071391 | 33.242 | 364 | 219 | 7 | 18 | 359 | 85 | 446 | 8.39e-80 | 251 |
Msa0608700 | MtrunA17_Chr3g0113671 | 38.372 | 344 | 185 | 9 | 43 | 359 | 106 | 449 | 1.67e-79 | 250 |
Msa0608700 | MtrunA17_Chr1g0213281 | 36.782 | 348 | 192 | 7 | 38 | 359 | 170 | 515 | 1.96e-79 | 252 |
Msa0608700 | MtrunA17_Chr7g0269991 | 36.905 | 336 | 188 | 8 | 43 | 359 | 137 | 467 | 3.36e-78 | 248 |
Msa0608700 | MtrunA17_Chr3g0114101 | 37.318 | 343 | 188 | 9 | 43 | 359 | 89 | 430 | 6.12e-76 | 241 |
Msa0608700 | MtrunA17_Chr5g0437601 | 36.182 | 351 | 199 | 7 | 34 | 359 | 74 | 424 | 6.62e-75 | 238 |
Msa0608700 | MtrunA17_Chr4g0006991 | 34.795 | 342 | 198 | 7 | 43 | 359 | 86 | 427 | 6.23e-74 | 235 |
Msa0608700 | MtrunA17_Chr8g0360521 | 36.000 | 350 | 188 | 10 | 39 | 359 | 67 | 409 | 8.48e-74 | 234 |
Msa0608700 | MtrunA17_Chr5g0413271 | 32.665 | 349 | 218 | 4 | 27 | 359 | 129 | 476 | 1.25e-72 | 233 |
Msa0608700 | MtrunA17_Chr8g0368461 | 33.705 | 359 | 202 | 7 | 36 | 359 | 171 | 528 | 1.85e-70 | 229 |
Msa0608700 | MtrunA17_Chr4g0005491 | 31.854 | 383 | 231 | 9 | 8 | 361 | 28 | 409 | 3.98e-69 | 222 |
Msa0608700 | MtrunA17_Chr3g0126021 | 37.609 | 343 | 189 | 8 | 37 | 359 | 122 | 459 | 2.17e-68 | 222 |
Msa0608700 | MtrunA17_Chr7g0259711 | 35.756 | 344 | 192 | 9 | 43 | 359 | 91 | 432 | 2.42e-68 | 221 |
Msa0608700 | MtrunA17_Chr7g0243301 | 31.620 | 389 | 232 | 11 | 1 | 359 | 25 | 409 | 6.42e-68 | 219 |
Msa0608700 | MtrunA17_Chr1g0209921 | 48.035 | 229 | 112 | 6 | 40 | 264 | 41 | 266 | 6.92e-68 | 214 |
Msa0608700 | MtrunA17_Chr2g0287901 | 34.694 | 343 | 198 | 7 | 40 | 357 | 94 | 435 | 1.66e-67 | 219 |
Msa0608700 | MtrunA17_Chr4g0005481 | 34.795 | 342 | 197 | 8 | 42 | 359 | 107 | 446 | 8.11e-67 | 217 |
Msa0608700 | MtrunA17_Chr7g0242701 | 35.965 | 342 | 194 | 7 | 43 | 359 | 86 | 427 | 1.64e-66 | 216 |
Msa0608700 | MtrunA17_Chr8g0384151 | 32.344 | 337 | 198 | 9 | 43 | 359 | 90 | 416 | 1.60e-57 | 192 |
Msa0608700 | MtrunA17_Chr1g0178081 | 30.831 | 373 | 171 | 12 | 12 | 359 | 31 | 341 | 5.91e-47 | 163 |
Msa0608700 | MtrunA17_Chr4g0049421 | 29.395 | 347 | 205 | 13 | 43 | 355 | 48 | 388 | 3.38e-38 | 140 |
Msa0608700 | MtrunA17_Chr6g0455901 | 30.352 | 369 | 218 | 12 | 27 | 360 | 53 | 417 | 1.91e-37 | 139 |
Msa0608700 | MtrunA17_Chr6g0476041 | 27.869 | 366 | 209 | 11 | 37 | 359 | 161 | 514 | 1.45e-36 | 138 |
Msa0608700 | MtrunA17_Chr1g0188191 | 29.577 | 355 | 197 | 14 | 43 | 355 | 234 | 577 | 4.42e-35 | 135 |
Msa0608700 | MtrunA17_Chr8g0384421 | 29.752 | 363 | 216 | 15 | 28 | 359 | 118 | 472 | 1.03e-34 | 132 |
Msa0608700 | MtrunA17_Chr5g0414051 | 30.899 | 356 | 197 | 16 | 43 | 359 | 75 | 420 | 6.79e-34 | 130 |
Msa0608700 | MtrunA17_Chr6g0456691 | 27.500 | 400 | 239 | 13 | 1 | 359 | 30 | 419 | 9.88e-33 | 126 |
Msa0608700 | MtrunA17_Chr5g0414061 | 29.143 | 350 | 210 | 13 | 43 | 359 | 94 | 438 | 5.95e-32 | 124 |
Msa0608700 | MtrunA17_Chr5g0414091 | 29.429 | 350 | 213 | 12 | 42 | 359 | 84 | 431 | 9.23e-32 | 124 |
Msa0608700 | MtrunA17_Chr7g0226991 | 27.851 | 377 | 231 | 13 | 17 | 359 | 33 | 402 | 1.47e-30 | 120 |
Msa0608700 | MtrunA17_Chr6g0456681 | 26.781 | 351 | 217 | 10 | 43 | 359 | 64 | 408 | 1.88e-30 | 120 |
Msa0608700 | MtrunA17_Chr8g0391481 | 27.920 | 351 | 218 | 10 | 43 | 361 | 27 | 374 | 1.20e-29 | 117 |
Msa0608700 | MtrunA17_Chr5g0414041 | 28.329 | 353 | 213 | 11 | 42 | 359 | 86 | 433 | 2.27e-29 | 117 |
Msa0608700 | MtrunA17_Chr4g0070341 | 26.882 | 372 | 211 | 14 | 27 | 359 | 122 | 471 | 2.52e-29 | 117 |
Msa0608700 | MtrunA17_Chr2g0283851 | 27.350 | 351 | 223 | 9 | 36 | 355 | 47 | 396 | 3.89e-29 | 116 |
Msa0608700 | MtrunA17_Chr8g0347321 | 26.972 | 393 | 220 | 16 | 15 | 359 | 66 | 439 | 7.65e-29 | 116 |
Msa0608700 | MtrunA17_Chr3g0085101 | 42.982 | 114 | 64 | 1 | 227 | 339 | 1 | 114 | 1.32e-26 | 102 |
Msa0608700 | MtrunA17_Chr3g0140371 | 28.814 | 354 | 204 | 15 | 43 | 359 | 18 | 360 | 2.22e-26 | 108 |
Msa0608700 | MtrunA17_Chr6g0451321 | 27.066 | 351 | 215 | 10 | 42 | 359 | 115 | 457 | 8.72e-26 | 107 |
Msa0608700 | MtrunA17_Chr8g0387921 | 24.438 | 356 | 218 | 9 | 40 | 355 | 71 | 415 | 9.52e-24 | 101 |
Msa0608700 | MtrunA17_Chr7g0221291 | 40.196 | 102 | 61 | 0 | 30 | 131 | 66 | 167 | 2.34e-19 | 84.3 |
Msa0608700 | MtrunA17_Chr7g0221271 | 32.857 | 140 | 94 | 0 | 30 | 169 | 66 | 205 | 3.58e-19 | 84.7 |
Msa0608700 | MtrunA17_Chr1g0209931 | 44.944 | 89 | 40 | 3 | 275 | 359 | 9 | 92 | 1.26e-16 | 74.7 |
Msa0608700 | MtrunA17_Chr5g0429211 | 47.368 | 76 | 40 | 0 | 97 | 172 | 194 | 269 | 1.51e-15 | 76.3 |
Msa0608700 | MtrunA17_Chr2g0287911 | 45.763 | 59 | 25 | 1 | 40 | 98 | 58 | 109 | 2.26e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0608700 | AT2G42570.1 | 63.855 | 332 | 119 | 1 | 29 | 359 | 33 | 364 | 1.80e-166 | 469 |
Msa0608700 | AT2G31110.2 | 58.659 | 358 | 144 | 3 | 6 | 360 | 7 | 363 | 3.00e-163 | 461 |
Msa0608700 | AT1G29050.1 | 61.491 | 322 | 123 | 1 | 40 | 360 | 58 | 379 | 2.01e-155 | 442 |
Msa0608700 | AT2G34070.1 | 61.250 | 320 | 122 | 2 | 43 | 360 | 65 | 384 | 1.01e-149 | 427 |
Msa0608700 | AT3G14850.2 | 57.009 | 321 | 134 | 3 | 40 | 356 | 31 | 351 | 1.47e-133 | 385 |
Msa0608700 | AT1G78710.1 | 50.440 | 341 | 162 | 5 | 23 | 359 | 19 | 356 | 1.27e-124 | 363 |
Msa0608700 | AT2G30900.1 | 50.769 | 325 | 154 | 4 | 43 | 361 | 43 | 367 | 3.01e-120 | 352 |
Msa0608700 | AT2G34070.2 | 61.200 | 250 | 95 | 2 | 113 | 360 | 1 | 250 | 1.91e-113 | 330 |
Msa0608700 | AT5G58600.1 | 48.214 | 336 | 156 | 5 | 42 | 359 | 65 | 400 | 8.46e-110 | 327 |
Msa0608700 | AT2G31110.3 | 56.693 | 254 | 107 | 2 | 6 | 257 | 7 | 259 | 2.19e-106 | 313 |
Msa0608700 | AT2G30010.1 | 42.328 | 378 | 194 | 5 | 6 | 359 | 19 | 396 | 1.93e-103 | 310 |
Msa0608700 | AT2G30010.2 | 42.328 | 378 | 194 | 5 | 6 | 359 | 62 | 439 | 4.41e-103 | 311 |
Msa0608700 | AT2G31110.1 | 63.462 | 208 | 75 | 1 | 154 | 360 | 8 | 215 | 3.57e-102 | 300 |
Msa0608700 | AT3G14850.1 | 56.048 | 248 | 105 | 3 | 113 | 356 | 1 | 248 | 3.44e-96 | 286 |
Msa0608700 | AT1G78710.2 | 41.944 | 360 | 141 | 7 | 4 | 359 | 1 | 296 | 3.05e-93 | 281 |
Msa0608700 | AT5G06700.1 | 41.096 | 365 | 190 | 6 | 19 | 359 | 231 | 594 | 2.13e-90 | 283 |
Msa0608700 | AT3G54260.1 | 39.940 | 333 | 175 | 6 | 43 | 359 | 51 | 374 | 8.12e-86 | 265 |
Msa0608700 | AT3G12060.1 | 39.474 | 342 | 182 | 5 | 42 | 359 | 195 | 535 | 1.65e-85 | 269 |
Msa0608700 | AT2G30900.2 | 52.511 | 219 | 102 | 2 | 43 | 259 | 43 | 261 | 9.61e-84 | 256 |
Msa0608700 | AT3G62390.1 | 38.166 | 338 | 188 | 6 | 43 | 361 | 138 | 473 | 3.53e-81 | 256 |
Msa0608700 | AT5G58600.2 | 50.667 | 225 | 109 | 2 | 42 | 264 | 65 | 289 | 5.52e-79 | 244 |
Msa0608700 | AT5G49340.1 | 36.544 | 353 | 181 | 7 | 41 | 359 | 98 | 441 | 6.18e-79 | 249 |
Msa0608700 | AT3G55990.1 | 35.792 | 366 | 206 | 9 | 21 | 359 | 120 | 483 | 5.02e-78 | 248 |
Msa0608700 | AT5G20590.1 | 35.882 | 340 | 194 | 7 | 43 | 359 | 141 | 479 | 1.24e-77 | 247 |
Msa0608700 | AT1G73140.1 | 37.209 | 344 | 186 | 10 | 42 | 359 | 66 | 405 | 1.93e-75 | 239 |
Msa0608700 | AT2G40160.2 | 35.714 | 350 | 193 | 9 | 43 | 361 | 77 | 425 | 2.50e-75 | 239 |
Msa0608700 | AT2G40160.1 | 35.756 | 344 | 189 | 9 | 43 | 355 | 77 | 419 | 8.03e-75 | 238 |
Msa0608700 | AT1G60790.1 | 36.047 | 344 | 192 | 7 | 43 | 359 | 190 | 532 | 2.39e-74 | 240 |
Msa0608700 | AT2G40150.1 | 34.571 | 350 | 196 | 8 | 43 | 359 | 71 | 420 | 6.61e-74 | 235 |
Msa0608700 | AT3G11030.1 | 35.694 | 353 | 199 | 9 | 34 | 359 | 97 | 448 | 2.51e-72 | 232 |
Msa0608700 | AT5G01620.2 | 34.571 | 350 | 202 | 8 | 35 | 359 | 102 | 449 | 8.61e-72 | 231 |
Msa0608700 | AT5G01620.1 | 34.571 | 350 | 202 | 8 | 35 | 359 | 102 | 449 | 8.61e-72 | 231 |
Msa0608700 | AT5G01620.3 | 34.571 | 350 | 202 | 8 | 35 | 359 | 110 | 457 | 1.20e-71 | 230 |
Msa0608700 | AT2G40320.1 | 34.521 | 365 | 214 | 8 | 20 | 359 | 58 | 422 | 2.60e-71 | 229 |
Msa0608700 | AT5G01360.2 | 34.985 | 343 | 197 | 8 | 43 | 359 | 36 | 378 | 1.44e-70 | 225 |
Msa0608700 | AT5G01360.1 | 34.985 | 343 | 197 | 8 | 43 | 359 | 92 | 434 | 5.62e-70 | 225 |
Msa0608700 | AT2G38320.1 | 32.216 | 388 | 233 | 9 | 1 | 359 | 18 | 404 | 7.49e-70 | 224 |
Msa0608700 | AT5G19160.1 | 34.109 | 387 | 203 | 10 | 19 | 357 | 60 | 442 | 1.14e-69 | 226 |
Msa0608700 | AT3G06080.2 | 35.380 | 342 | 193 | 8 | 43 | 357 | 103 | 443 | 7.82e-68 | 221 |
Msa0608700 | AT1G48880.1 | 35.310 | 371 | 215 | 9 | 1 | 355 | 74 | 435 | 2.64e-66 | 216 |
Msa0608700 | AT5G06230.2 | 36.000 | 350 | 193 | 10 | 39 | 359 | 17 | 364 | 7.95e-66 | 213 |
Msa0608700 | AT5G06230.1 | 36.000 | 350 | 193 | 10 | 39 | 359 | 58 | 405 | 2.28e-65 | 213 |
Msa0608700 | AT3G11570.1 | 36.223 | 323 | 183 | 6 | 59 | 359 | 98 | 419 | 2.27e-64 | 211 |
Msa0608700 | AT2G38320.2 | 31.761 | 318 | 189 | 7 | 70 | 359 | 4 | 321 | 3.88e-56 | 186 |
Msa0608700 | AT3G62390.2 | 36.709 | 237 | 138 | 3 | 43 | 267 | 138 | 374 | 6.45e-55 | 186 |
Msa0608700 | AT2G40160.3 | 37.179 | 234 | 135 | 5 | 43 | 264 | 77 | 310 | 2.97e-52 | 176 |
Msa0608700 | AT5G20590.2 | 35.294 | 238 | 140 | 5 | 43 | 266 | 141 | 378 | 2.90e-51 | 175 |
Msa0608700 | AT5G19160.2 | 33.935 | 277 | 154 | 5 | 19 | 266 | 60 | 336 | 3.81e-49 | 169 |
Msa0608700 | AT3G06080.1 | 35.714 | 238 | 139 | 4 | 43 | 266 | 103 | 340 | 1.80e-46 | 162 |
Msa0608700 | AT5G06230.3 | 35.081 | 248 | 141 | 5 | 39 | 266 | 58 | 305 | 2.05e-44 | 155 |
Msa0608700 | AT2G14530.1 | 29.973 | 367 | 215 | 10 | 28 | 359 | 47 | 406 | 5.73e-42 | 151 |
Msa0608700 | AT5G64470.3 | 29.799 | 349 | 212 | 12 | 36 | 355 | 46 | 390 | 6.31e-40 | 145 |
Msa0608700 | AT5G64470.2 | 29.775 | 356 | 209 | 14 | 36 | 355 | 46 | 396 | 4.56e-38 | 141 |
Msa0608700 | AT1G70230.1 | 29.412 | 340 | 210 | 10 | 43 | 359 | 79 | 411 | 5.50e-38 | 141 |
Msa0608700 | AT5G51640.1 | 27.249 | 389 | 227 | 12 | 16 | 359 | 111 | 488 | 3.00e-36 | 137 |
Msa0608700 | AT4G25360.1 | 27.632 | 380 | 222 | 13 | 20 | 355 | 150 | 520 | 9.19e-36 | 137 |
Msa0608700 | AT4G25360.2 | 27.632 | 380 | 222 | 13 | 20 | 355 | 150 | 520 | 9.19e-36 | 137 |
Msa0608700 | AT5G64020.1 | 29.444 | 360 | 205 | 15 | 42 | 359 | 56 | 408 | 3.94e-34 | 130 |
Msa0608700 | AT2G37720.1 | 29.640 | 361 | 191 | 15 | 42 | 359 | 142 | 482 | 2.06e-32 | 127 |
Msa0608700 | AT5G15900.1 | 25.862 | 406 | 242 | 14 | 1 | 359 | 16 | 409 | 3.24e-32 | 125 |
Msa0608700 | AT5G15900.2 | 25.862 | 406 | 242 | 14 | 1 | 359 | 35 | 428 | 4.49e-32 | 125 |
Msa0608700 | AT3G28150.1 | 27.577 | 388 | 244 | 13 | 5 | 361 | 31 | 412 | 2.49e-31 | 123 |
Msa0608700 | AT1G01430.1 | 25.532 | 376 | 236 | 11 | 22 | 359 | 78 | 447 | 3.52e-30 | 120 |
Msa0608700 | AT5G20680.6 | 27.855 | 359 | 198 | 15 | 43 | 359 | 118 | 457 | 7.05e-30 | 119 |
Msa0608700 | AT5G20680.2 | 27.577 | 359 | 199 | 14 | 43 | 359 | 194 | 533 | 1.16e-29 | 119 |
Msa0608700 | AT5G20680.4 | 27.577 | 359 | 199 | 14 | 43 | 359 | 212 | 551 | 1.17e-29 | 120 |
Msa0608700 | AT5G20680.1 | 27.577 | 359 | 199 | 14 | 43 | 359 | 212 | 551 | 1.17e-29 | 120 |
Msa0608700 | AT5G20680.3 | 27.577 | 359 | 199 | 14 | 43 | 359 | 212 | 551 | 1.17e-29 | 120 |
Msa0608700 | AT5G20680.5 | 27.577 | 359 | 199 | 14 | 43 | 359 | 212 | 551 | 1.17e-29 | 120 |
Msa0608700 | AT3G02440.2 | 24.928 | 349 | 223 | 10 | 43 | 359 | 135 | 476 | 7.13e-29 | 117 |
Msa0608700 | AT3G02440.1 | 24.928 | 349 | 223 | 10 | 43 | 359 | 127 | 468 | 7.25e-29 | 117 |
Msa0608700 | AT5G15890.1 | 26.724 | 348 | 204 | 12 | 43 | 355 | 187 | 518 | 6.16e-27 | 112 |
Msa0608700 | AT5G64470.4 | 29.213 | 267 | 164 | 10 | 36 | 281 | 46 | 308 | 2.78e-24 | 101 |
Msa0608700 | AT5G64470.1 | 29.213 | 267 | 164 | 10 | 36 | 281 | 46 | 308 | 4.19e-24 | 101 |
Msa0608700 | AT4G01080.1 | 25.143 | 350 | 217 | 12 | 40 | 355 | 88 | 426 | 8.45e-24 | 102 |
Msa0608700 | AT4G11090.1 | 24.866 | 374 | 223 | 13 | 30 | 359 | 66 | 425 | 1.49e-23 | 101 |
Msa0608700 | AT4G23790.1 | 24.929 | 353 | 225 | 11 | 43 | 359 | 79 | 427 | 1.59e-21 | 95.5 |
Find 98 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTCAAATTGAAAACATATT+TGG | 0.172908 | 4_2:+55898357 | None:intergenic |
CTGAATGTGCTTCTAGAATT+TGG | 0.184720 | 4_2:+55901019 | None:intergenic |
AACATATTTGGTACAATTAA+AGG | 0.190331 | 4_2:+55898369 | None:intergenic |
CAAACCAAAGTCTTCTTCTT+AGG | 0.227258 | 4_2:-55899004 | Msa0608700:CDS |
ATGGCATCCACCTATATTTC+TGG | 0.239401 | 4_2:+55901255 | None:intergenic |
AAATATTTAATTTGATGTTT+TGG | 0.255647 | 4_2:-55898469 | Msa0608700:three_prime_UTR |
TGTAGCCACTGGTGTCTTCC+TGG | 0.277598 | 4_2:-55898629 | Msa0608700:CDS |
AGTGAGAAAGTGCCATATTT+TGG | 0.279871 | 4_2:-55898809 | Msa0608700:CDS |
TTCTTGTAATTGGGCAATAA+AGG | 0.292541 | 4_2:-55898446 | Msa0608700:three_prime_UTR |
CTTGGCATGTTACAAGAAAA+TGG | 0.318130 | 4_2:+55901236 | None:intergenic |
AGAAGCTGATTCCAAGTATC+AGG | 0.322948 | 4_2:+55898602 | None:intergenic |
CAAGCACTGAAACCATTTCT+TGG | 0.325936 | 4_2:+55901510 | None:intergenic |
GGGTATTTCAAACCAAAATA+TGG | 0.332479 | 4_2:+55898797 | None:intergenic |
GACAAATTAATTTGTTTGTA+AGG | 0.347307 | 4_2:-55898535 | Msa0608700:three_prime_UTR |
ATTGTAAATGTTCATTGTTT+AGG | 0.354264 | 4_2:-55898402 | Msa0608700:three_prime_UTR |
TGACAGATGGGATTATATTC+AGG | 0.367092 | 4_2:-55899125 | Msa0608700:intron |
TTCCTGGACTTCCTGATACT+TGG | 0.369841 | 4_2:-55898613 | Msa0608700:CDS |
TCACTCATGCATGACTTTGT+TGG | 0.371357 | 4_2:+55898827 | None:intergenic |
TAGTATATCTTGGAAGGATT+TGG | 0.383203 | 4_2:-55898335 | Msa0608700:three_prime_UTR |
ATAAGCTTTACCAGAAATAT+AGG | 0.384304 | 4_2:-55901265 | Msa0608700:CDS |
TCAATTTGAATAGTATATCT+TGG | 0.396256 | 4_2:-55898345 | Msa0608700:three_prime_UTR |
GTCACATCTAAGAAATAAAC+TGG | 0.411760 | 4_2:+55898716 | None:intergenic |
AAGCACTGAAACCATTTCTT+GGG | 0.414434 | 4_2:+55901511 | None:intergenic |
AAGAAGACTTTGGTTTGTGC+TGG | 0.422122 | 4_2:+55899010 | None:intergenic |
GGGAAGAAGATTATGTTTGT+TGG | 0.424391 | 4_2:-55901100 | Msa0608700:CDS |
CAAGCCATTGGTGTCCCTCC+AGG | 0.427641 | 4_2:+55898776 | None:intergenic |
TTTGAAGTCAGTAACATTGC+AGG | 0.428295 | 4_2:-55901404 | Msa0608700:CDS |
AACTTTCTGAAGGGTAATAG+AGG | 0.429506 | 4_2:-55901121 | Msa0608700:CDS |
TCTATACCGCACAGCATACT+TGG | 0.433438 | 4_2:-55899371 | Msa0608700:CDS |
TGAAGGTTATAGTGGTGTTA+TGG | 0.434673 | 4_2:-55898660 | Msa0608700:CDS |
GTAACTTGTTCCGTGGCAAA+TGG | 0.439848 | 4_2:-55901376 | Msa0608700:CDS |
TATCTCTTCAGTCACATTTG+AGG | 0.440220 | 4_2:-55900984 | Msa0608700:intron |
GTCCTTCTTTATCATGATCA+AGG | 0.442671 | 4_2:+55899344 | None:intergenic |
TCTACAAAGGACTACAAACT+TGG | 0.453097 | 4_2:-55899060 | Msa0608700:CDS |
TGGGAACAAAACCCAAGAAA+TGG | 0.453731 | 4_2:-55901522 | Msa0608700:exon |
TACAAGCTAACGAATTGAAC+TGG | 0.455479 | 4_2:+55901059 | None:intergenic |
TGTAATTGGGCAATAAAGGT+TGG | 0.457607 | 4_2:-55898442 | Msa0608700:three_prime_UTR |
TATTATATAAGAACATGATT+AGG | 0.460279 | 4_2:-55901600 | Msa0608700:five_prime_UTR |
AAATTGTTTCGCAGGTTCAA+TGG | 0.460433 | 4_2:-55901148 | Msa0608700:intron |
AATTCCTAAGAAGAAGACTT+TGG | 0.470232 | 4_2:+55899000 | None:intergenic |
TTTCCTAAATTTGAAAACAA+TGG | 0.479773 | 4_2:+55898489 | None:intergenic |
CAAATCAAAAGCTTTAGAAA+AGG | 0.480949 | 4_2:+55898278 | None:intergenic |
AATGTTACTGACTTCAAAGT+TGG | 0.485805 | 4_2:+55901409 | None:intergenic |
AAAGATGTAGAGAGAGAAAG+AGG | 0.494136 | 4_2:+55901633 | None:intergenic |
CAATCAAGAGTGGTGAAGCT+TGG | 0.495413 | 4_2:-55899303 | Msa0608700:CDS |
AGGGACACCAATGGCTTGGA+TGG | 0.502776 | 4_2:-55898771 | Msa0608700:CDS |
TTTGAATAGTATATCTTGGA+AGG | 0.504986 | 4_2:-55898341 | Msa0608700:three_prime_UTR |
TCTTCAACACGTGGCATTGG+TGG | 0.505890 | 4_2:-55899261 | Msa0608700:CDS |
TAACTTGTTCCGTGGCAAAT+GGG | 0.506637 | 4_2:-55901375 | Msa0608700:CDS |
GCACATCCTGAAGGTTATAG+TGG | 0.507023 | 4_2:-55898668 | Msa0608700:CDS |
ATGTAGAGAGAGAAAGAGGA+GGG | 0.509507 | 4_2:+55901637 | None:intergenic |
CAATGGTTTGAACTTTCTGA+AGG | 0.510925 | 4_2:-55901131 | Msa0608700:CDS |
ATAACACCACTATAACCTTC+AGG | 0.516042 | 4_2:+55898662 | None:intergenic |
CGGTTGTGAGCTTCCAGTGT+GGG | 0.524560 | 4_2:+55899237 | None:intergenic |
TTGGTTTGAAATACCCTGGA+GGG | 0.527368 | 4_2:-55898790 | Msa0608700:CDS |
TGGTGAAGCTTGGAGAGGAA+TGG | 0.527447 | 4_2:-55899293 | Msa0608700:CDS |
CTGGAGGGACACCAATGGCT+TGG | 0.529625 | 4_2:-55898775 | Msa0608700:CDS |
TTCACCACCATCCAAGCCAT+TGG | 0.532920 | 4_2:+55898764 | None:intergenic |
TCTATGAAAGGACAAGTTGA+AGG | 0.533615 | 4_2:+55901323 | None:intergenic |
ATAACTTACTGGTAATGTAC+AGG | 0.538647 | 4_2:+55898974 | None:intergenic |
TGATCTTCAACACGTGGCAT+TGG | 0.541024 | 4_2:-55899264 | Msa0608700:CDS |
TCATGCATGACTTTGTTGGT+TGG | 0.542003 | 4_2:+55898831 | None:intergenic |
CAAGTTGAAGGGTTATAGAG+AGG | 0.546976 | 4_2:+55901335 | None:intergenic |
TTCCAAGTATCAGGAAGTCC+AGG | 0.548161 | 4_2:+55898611 | None:intergenic |
TAGAATTTGGTACAGCAGCA+TGG | 0.554694 | 4_2:+55901032 | None:intergenic |
TTCCCACCAAACAAAATCAG+AGG | 0.559578 | 4_2:-55901456 | Msa0608700:CDS |
GACCTTGATCATGATAAAGA+AGG | 0.566545 | 4_2:-55899346 | Msa0608700:CDS |
GACTACAAACTTGGGCTAGG+TGG | 0.570817 | 4_2:-55899051 | Msa0608700:CDS |
ACTACAAACTTGGGCTAGGT+GGG | 0.578379 | 4_2:-55899050 | Msa0608700:CDS |
AAGCCATTGGTGTCCCTCCA+GGG | 0.581911 | 4_2:+55898777 | None:intergenic |
CTACAAAGGACTACAAACTT+GGG | 0.582833 | 4_2:-55899059 | Msa0608700:CDS |
TGGCATTGGTGGACCCACAC+TGG | 0.584418 | 4_2:-55899250 | Msa0608700:CDS |
ATACCGCACAGCATACTTGG+TGG | 0.586879 | 4_2:-55899368 | Msa0608700:CDS |
TTGAACTGTGGATCTATGAA+AGG | 0.589879 | 4_2:+55901311 | None:intergenic |
GGCTTGGATGGTGGTGAACA+AGG | 0.591402 | 4_2:-55898759 | Msa0608700:CDS |
ATTGGGCAATAAAGGTTGGA+TGG | 0.593271 | 4_2:-55898438 | Msa0608700:three_prime_UTR |
AATGGTTTGAACTTTCTGAA+GGG | 0.597673 | 4_2:-55901130 | Msa0608700:CDS |
AGAAAAGATGCACATCCTGA+AGG | 0.597997 | 4_2:-55898677 | Msa0608700:CDS |
GATGTAGAGAGAGAAAGAGG+AGG | 0.602883 | 4_2:+55901636 | None:intergenic |
AAGGACTACAAACTTGGGCT+AGG | 0.603384 | 4_2:-55899054 | Msa0608700:CDS |
GACACCAATGGCTTGGATGG+TGG | 0.610440 | 4_2:-55898768 | Msa0608700:CDS |
CAGTTCAATTGTCAGAAACA+TGG | 0.617132 | 4_2:-55901296 | Msa0608700:CDS |
ACTTTCTGAAGGGTAATAGA+GGG | 0.617389 | 4_2:-55901120 | Msa0608700:CDS |
TGGCAACTGATTGTAGCCAC+TGG | 0.618075 | 4_2:-55898640 | Msa0608700:CDS |
CTATGAAAGGACAAGTTGAA+GGG | 0.623253 | 4_2:+55901324 | None:intergenic |
TGGTGAACAAGGTGTTGAGA+AGG | 0.632793 | 4_2:-55898748 | Msa0608700:CDS |
ATACCCTGGAGGGACACCAA+TGG | 0.646199 | 4_2:-55898780 | Msa0608700:CDS |
AGCTTTACCAGAAATATAGG+TGG | 0.648575 | 4_2:-55901262 | Msa0608700:CDS |
ACGGTTGTGAGCTTCCAGTG+TGG | 0.657143 | 4_2:+55899236 | None:intergenic |
AAGCTTGACTCAATCAAGAG+TGG | 0.662012 | 4_2:-55899313 | Msa0608700:CDS |
CGTCGTAGACCCATTTGCCA+CGG | 0.673142 | 4_2:+55901366 | None:intergenic |
AAGAGTGGTGAAGCTTGGAG+AGG | 0.679537 | 4_2:-55899298 | Msa0608700:CDS |
GGAACATGTAACTTGTTCCG+TGG | 0.681608 | 4_2:-55901383 | Msa0608700:CDS |
TGTTTCTGACAATTGAACTG+TGG | 0.711026 | 4_2:+55901299 | None:intergenic |
TTTGGTTTGAAATACCCTGG+AGG | 0.715369 | 4_2:-55898791 | Msa0608700:CDS |
GAAGTCCAGGAAGACACCAG+TGG | 0.726350 | 4_2:+55898624 | None:intergenic |
ATGTGTTGATCTTCAACACG+TGG | 0.756788 | 4_2:-55899270 | Msa0608700:CDS |
GGTCCACCAAGTATGCTGTG+CGG | 0.774384 | 4_2:+55899365 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTATTTTTATTTTGAG+AGG | + | chr4_2:55899794-55899813 | None:intergenic | 10.0% |
!!! | AAAAAAATATTAGGATTTTT+TGG | + | chr4_2:55900065-55900084 | None:intergenic | 10.0% |
!!! | AAATATTTAATTTGATGTTT+TGG | - | chr4_2:55901426-55901445 | Msa0608700:CDS | 10.0% |
!! | TATTATATAAGAACATGATT+AGG | - | chr4_2:55898295-55898314 | Msa0608700:three_prime_UTR | 15.0% |
!!! | GATTTTTTTTGAATGAAAAA+AGG | + | chr4_2:55898347-55898366 | None:intergenic | 15.0% |
!! | AAACAATTAAAAAACACTAT+TGG | + | chr4_2:55899157-55899176 | None:intergenic | 15.0% |
!!! | ATTTTATTTATGATGAAAAG+TGG | - | chr4_2:55899659-55899678 | Msa0608700:intron | 15.0% |
!!! | TATTTTTTTTGTTAAACATC+CGG | - | chr4_2:55899895-55899914 | Msa0608700:intron | 15.0% |
!!! | TAAATGTTATTGTTGTTTTT+AGG | - | chr4_2:55900482-55900501 | Msa0608700:intron | 15.0% |
!!! | TTAAGCTCTAAAAATATATA+TGG | - | chr4_2:55901013-55901032 | Msa0608700:CDS | 15.0% |
!! | ATTCAAATTGAAAACATATT+TGG | + | chr4_2:55901541-55901560 | None:intergenic | 15.0% |
!!! | TTTTCATTCAAAAAAAATCG+TGG | - | chr4_2:55898348-55898367 | Msa0608700:three_prime_UTR | 20.0% |
!! | TTTCATTCAAAAAAAATCGT+GGG | - | chr4_2:55898349-55898368 | Msa0608700:three_prime_UTR | 20.0% |
!! | TTCAATGTAATTACAAATGT+CGG | + | chr4_2:55899022-55899041 | None:intergenic | 20.0% |
!!! | TTTTAAAACAATGAAAGTGA+AGG | + | chr4_2:55899122-55899141 | None:intergenic | 20.0% |
!!! | TTGTTTGTTTTAATGATGTT+AGG | - | chr4_2:55899179-55899198 | Msa0608700:intron | 20.0% |
!! | TAAAATACGTAATGAATTTG+TGG | + | chr4_2:55899645-55899664 | None:intergenic | 20.0% |
!!! | TTTTGAAAATGAAGTAACAA+GGG | + | chr4_2:55899697-55899716 | None:intergenic | 20.0% |
!!! | TTTATTTGACAACGTTTTAT+AGG | + | chr4_2:55899855-55899874 | None:intergenic | 20.0% |
!!! | CAAAGTGTTAATATAAAAAC+CGG | + | chr4_2:55899917-55899936 | None:intergenic | 20.0% |
!! | TTAAATACCAACAAAACTTT+AGG | + | chr4_2:55899943-55899962 | None:intergenic | 20.0% |
!!! | TTTTTTGGAATCCTAAAATT+CGG | + | chr4_2:55900050-55900069 | None:intergenic | 20.0% |
!! | AACATTGAACATTAAGATAA+CGG | - | chr4_2:55900375-55900394 | Msa0608700:intron | 20.0% |
!! | TTAGCATCATTAATTAATCA+TGG | + | chr4_2:55900726-55900745 | None:intergenic | 20.0% |
!! | ATTAGATATTCATAACTTAC+TGG | + | chr4_2:55900935-55900954 | None:intergenic | 20.0% |
!!! | GACAAATTAATTTGTTTGTA+AGG | - | chr4_2:55901360-55901379 | Msa0608700:CDS | 20.0% |
!!! | AATCCATTGTTTTCAAATTT+AGG | - | chr4_2:55901403-55901422 | Msa0608700:CDS | 20.0% |
!! | TTTCCTAAATTTGAAAACAA+TGG | + | chr4_2:55901409-55901428 | None:intergenic | 20.0% |
!!! | ACATTTACAATTTTAGACAT+TGG | + | chr4_2:55901484-55901503 | None:intergenic | 20.0% |
!! | ATTGTAAATGTTCATTGTTT+AGG | - | chr4_2:55901493-55901512 | Msa0608700:CDS | 20.0% |
!! | AACATATTTGGTACAATTAA+AGG | + | chr4_2:55901529-55901548 | None:intergenic | 20.0% |
!! | TCAATTTGAATAGTATATCT+TGG | - | chr4_2:55901550-55901569 | Msa0608700:five_prime_UTR | 20.0% |
!! | TAAAATCCTCTGATTTTGTT+TGG | + | chr4_2:55898448-55898467 | None:intergenic | 25.0% |
! | ATAAGCTTTACCAGAAATAT+AGG | - | chr4_2:55898630-55898649 | Msa0608700:CDS | 25.0% |
!!! | TGTTCTTTTGTTGGTTTTTA+TGG | - | chr4_2:55898705-55898724 | Msa0608700:CDS | 25.0% |
! | CAATAAAGAATTGATGTGAT+TGG | - | chr4_2:55899369-55899388 | Msa0608700:CDS | 25.0% |
! | AAAAAATTTGCCACAAAAGT+GGG | + | chr4_2:55899477-55899496 | None:intergenic | 25.0% |
! | TAAAAAATTTGCCACAAAAG+TGG | + | chr4_2:55899478-55899497 | None:intergenic | 25.0% |
!!! | CTACTCTTTATTTTTTTGAG+AGG | - | chr4_2:55899557-55899576 | Msa0608700:intron | 25.0% |
! | GTTTGAGAAACAATAAAGAA+TGG | + | chr4_2:55899589-55899608 | None:intergenic | 25.0% |
!!! | GTTTTGAAAATGAAGTAACA+AGG | + | chr4_2:55899698-55899717 | None:intergenic | 25.0% |
!! | GTTTTATAGGATAAAGTTCA+AGG | + | chr4_2:55899842-55899861 | None:intergenic | 25.0% |
! | AATTAATCAGATTTACTGGT+AGG | + | chr4_2:55900243-55900262 | None:intergenic | 25.0% |
! | AAGCAATTAATCAGATTTAC+TGG | + | chr4_2:55900247-55900266 | None:intergenic | 25.0% |
! | AATGTGACTGGTATAATTAT+TGG | - | chr4_2:55900312-55900331 | Msa0608700:intron | 25.0% |
!!! | TATTGTTGTTTTTAGGAGTA+TGG | - | chr4_2:55900489-55900508 | Msa0608700:intron | 25.0% |
!!! | ATTGTTGTTTTTAGGAGTAT+GGG | - | chr4_2:55900490-55900509 | Msa0608700:intron | 25.0% |
! | TTGAAAAATTCATGACAGAT+GGG | - | chr4_2:55900758-55900777 | Msa0608700:intron | 25.0% |
! | CTAAAAATATATATGGTGTG+TGG | - | chr4_2:55901020-55901039 | Msa0608700:CDS | 25.0% |
!!! | TAAGGTTCTACTTATTTTAG+AGG | - | chr4_2:55901378-55901397 | Msa0608700:CDS | 25.0% |
!!! | ATGTTTTGGTTCTTGTAATT+GGG | - | chr4_2:55901440-55901459 | Msa0608700:CDS | 25.0% |
! | TTTGAATAGTATATCTTGGA+AGG | - | chr4_2:55901554-55901573 | Msa0608700:five_prime_UTR | 25.0% |
!!! | CAAATCAAAAGCTTTAGAAA+AGG | + | chr4_2:55901620-55901639 | None:intergenic | 25.0% |
ATTCAAAAAAAATCGTGGGT+TGG | - | chr4_2:55898353-55898372 | Msa0608700:three_prime_UTR | 30.0% | |
TTCAAAAAAAATCGTGGGTT+GGG | - | chr4_2:55898354-55898373 | Msa0608700:three_prime_UTR | 30.0% | |
!! | AATGTTACTGACTTCAAAGT+TGG | + | chr4_2:55898489-55898508 | None:intergenic | 30.0% |
TGGTAACAAAAATTGTACCT+TGG | + | chr4_2:55898680-55898699 | None:intergenic | 30.0% | |
! | ACCATTTTGTGTTCTTTTGT+TGG | - | chr4_2:55898696-55898715 | Msa0608700:CDS | 30.0% |
ACCAACAAAAGAACACAAAA+TGG | + | chr4_2:55898700-55898719 | None:intergenic | 30.0% | |
AATGGTTTGAACTTTCTGAA+GGG | - | chr4_2:55898765-55898784 | Msa0608700:CDS | 30.0% | |
CACAAAAGTCATAAAAGTGA+AGG | + | chr4_2:55898952-55898971 | None:intergenic | 30.0% | |
TTTGAGTATTACAAACCTTG+AGG | - | chr4_2:55899299-55899318 | Msa0608700:CDS | 30.0% | |
AAAGAATTGATGTGATTGGT+TGG | - | chr4_2:55899373-55899392 | Msa0608700:CDS | 30.0% | |
!!! | CTTTTTTATTAGAACAGACG+TGG | - | chr4_2:55899608-55899627 | Msa0608700:intron | 30.0% |
CTAGACAAGATAATGAACTT+TGG | - | chr4_2:55899767-55899786 | Msa0608700:intron | 30.0% | |
!! | TTTGACACCTAAAGTTTTGT+TGG | - | chr4_2:55899933-55899952 | Msa0608700:intron | 30.0% |
! | TGAGTAATCAACCGAATTTT+AGG | - | chr4_2:55900036-55900055 | Msa0608700:intron | 30.0% |
!!! | ACGAAACCCTTTTTTTTTCA+TGG | - | chr4_2:55900148-55900167 | Msa0608700:intron | 30.0% |
ATGGGACCATGAAAAAAAAA+GGG | + | chr4_2:55900157-55900176 | None:intergenic | 30.0% | |
! | TTCATTACATTTGCTGAAAC+AGG | + | chr4_2:55900183-55900202 | None:intergenic | 30.0% |
! | TGCTATTTATACAATGTGAC+TGG | - | chr4_2:55900300-55900319 | Msa0608700:intron | 30.0% |
CTTGAAAAATTCATGACAGA+TGG | - | chr4_2:55900757-55900776 | Msa0608700:intron | 30.0% | |
AATTCCTAAGAAGAAGACTT+TGG | + | chr4_2:55900898-55900917 | None:intergenic | 30.0% | |
! | ATAACTTACTGGTAATGTAC+AGG | + | chr4_2:55900924-55900943 | None:intergenic | 30.0% |
TATATATGGTGTGTGGTATT+AGG | - | chr4_2:55901027-55901046 | Msa0608700:CDS | 30.0% | |
ATATATGGTGTGTGGTATTA+GGG | - | chr4_2:55901028-55901047 | Msa0608700:CDS | 30.0% | |
GGGTATTTCAAACCAAAATA+TGG | + | chr4_2:55901101-55901120 | None:intergenic | 30.0% | |
!!! | TATTTTGGTTTGAAATACCC+TGG | - | chr4_2:55901101-55901120 | Msa0608700:CDS | 30.0% |
GTCACATCTAAGAAATAAAC+TGG | + | chr4_2:55901182-55901201 | None:intergenic | 30.0% | |
!!! | GATGTTTTGGTTCTTGTAAT+TGG | - | chr4_2:55901439-55901458 | Msa0608700:CDS | 30.0% |
TTCTTGTAATTGGGCAATAA+AGG | - | chr4_2:55901449-55901468 | Msa0608700:CDS | 30.0% | |
TAGTATATCTTGGAAGGATT+TGG | - | chr4_2:55901560-55901579 | Msa0608700:five_prime_UTR | 30.0% | |
AAAGATGTAGAGAGAGAAAG+AGG | + | chr4_2:55898265-55898284 | None:intergenic | 35.0% | |
!! | AAGCACTGAAACCATTTCTT+GGG | + | chr4_2:55898387-55898406 | None:intergenic | 35.0% |
!! | ATCCTCTGATTTTGTTTGGT+GGG | + | chr4_2:55898444-55898463 | None:intergenic | 35.0% |
!! | AATCCTCTGATTTTGTTTGG+TGG | + | chr4_2:55898445-55898464 | None:intergenic | 35.0% |
! | TTTGAAGTCAGTAACATTGC+AGG | - | chr4_2:55898491-55898510 | Msa0608700:three_prime_UTR | 35.0% |
! | CTATGAAAGGACAAGTTGAA+GGG | + | chr4_2:55898574-55898593 | None:intergenic | 35.0% |
! | TCTATGAAAGGACAAGTTGA+AGG | + | chr4_2:55898575-55898594 | None:intergenic | 35.0% |
TTGAACTGTGGATCTATGAA+AGG | + | chr4_2:55898587-55898606 | None:intergenic | 35.0% | |
! | TGTTTCTGACAATTGAACTG+TGG | + | chr4_2:55898599-55898618 | None:intergenic | 35.0% |
CAGTTCAATTGTCAGAAACA+TGG | - | chr4_2:55898599-55898618 | Msa0608700:CDS | 35.0% | |
AGCTTTACCAGAAATATAGG+TGG | - | chr4_2:55898633-55898652 | Msa0608700:CDS | 35.0% | |
CTTGGCATGTTACAAGAAAA+TGG | + | chr4_2:55898662-55898681 | None:intergenic | 35.0% | |
! | CATTTTCTTGTAACATGCCA+AGG | - | chr4_2:55898660-55898679 | Msa0608700:CDS | 35.0% |
GTTGTGATAAATTGTTTCGC+AGG | - | chr4_2:55898739-55898758 | Msa0608700:CDS | 35.0% | |
AAATTGTTTCGCAGGTTCAA+TGG | - | chr4_2:55898747-55898766 | Msa0608700:CDS | 35.0% | |
CAATGGTTTGAACTTTCTGA+AGG | - | chr4_2:55898764-55898783 | Msa0608700:CDS | 35.0% | |
! | AACTTTCTGAAGGGTAATAG+AGG | - | chr4_2:55898774-55898793 | Msa0608700:CDS | 35.0% |
! | ACTTTCTGAAGGGTAATAGA+GGG | - | chr4_2:55898775-55898794 | Msa0608700:CDS | 35.0% |
GGGAAGAAGATTATGTTTGT+TGG | - | chr4_2:55898795-55898814 | Msa0608700:CDS | 35.0% | |
TACAAGCTAACGAATTGAAC+TGG | + | chr4_2:55898839-55898858 | None:intergenic | 35.0% | |
!! | CTGAATGTGCTTCTAGAATT+TGG | + | chr4_2:55898879-55898898 | None:intergenic | 35.0% |
TATCTCTTCAGTCACATTTG+AGG | - | chr4_2:55898911-55898930 | Msa0608700:intron | 35.0% | |
! | GACTTTTGTGTAATGAAGCA+CGG | - | chr4_2:55898962-55898981 | Msa0608700:intron | 35.0% |
TATTATCTGTGTTAGCGTGT+CGG | - | chr4_2:55899061-55899080 | Msa0608700:CDS | 35.0% | |
!! | TATACTTAGACCCACTTTTG+TGG | - | chr4_2:55899464-55899483 | Msa0608700:intron | 35.0% |
CATTATGTGCATGTTTGAGT+TGG | + | chr4_2:55899501-55899520 | None:intergenic | 35.0% | |
!! | CTTGTCTAGTTGTTTTGCAT+AGG | + | chr4_2:55899756-55899775 | None:intergenic | 35.0% |
CATGGGACCATGAAAAAAAA+AGG | + | chr4_2:55900158-55900177 | None:intergenic | 35.0% | |
!!! | CTTTTTTTTTCATGGTCCCA+TGG | - | chr4_2:55900156-55900175 | Msa0608700:intron | 35.0% |
TAATCAGATTTACTGGTAGG+TGG | + | chr4_2:55900240-55900259 | None:intergenic | 35.0% | |
TGGTCATAAGTGTATCAAAC+TGG | - | chr4_2:55900332-55900351 | Msa0608700:intron | 35.0% | |
GACCTTGATCATGATAAAGA+AGG | - | chr4_2:55900549-55900568 | Msa0608700:intron | 35.0% | |
GTCCTTCTTTATCATGATCA+AGG | + | chr4_2:55900554-55900573 | None:intergenic | 35.0% | |
AATGTGAGAGAATGATCCTA+CGG | + | chr4_2:55900681-55900700 | None:intergenic | 35.0% | |
TGACAGATGGGATTATATTC+AGG | - | chr4_2:55900770-55900789 | Msa0608700:intron | 35.0% | |
!! | CGTTTTGTTGCATTCTACAA+AGG | - | chr4_2:55900822-55900841 | Msa0608700:intron | 35.0% |
TCTACAAAGGACTACAAACT+TGG | - | chr4_2:55900835-55900854 | Msa0608700:intron | 35.0% | |
CTACAAAGGACTACAAACTT+GGG | - | chr4_2:55900836-55900855 | Msa0608700:intron | 35.0% | |
CAAACCAAAGTCTTCTTCTT+AGG | - | chr4_2:55900891-55900910 | Msa0608700:intron | 35.0% | |
TATATGGTGTGTGGTATTAG+GGG | - | chr4_2:55901029-55901048 | Msa0608700:CDS | 35.0% | |
!!! | AGTGAGAAAGTGCCATATTT+TGG | - | chr4_2:55901086-55901105 | Msa0608700:CDS | 35.0% |
ATAACACCACTATAACCTTC+AGG | + | chr4_2:55901236-55901255 | None:intergenic | 35.0% | |
! | TGAAGGTTATAGTGGTGTTA+TGG | - | chr4_2:55901235-55901254 | Msa0608700:intron | 35.0% |
TGTAATTGGGCAATAAAGGT+TGG | - | chr4_2:55901453-55901472 | Msa0608700:CDS | 35.0% | |
ATGTAGAGAGAGAAAGAGGA+GGG | + | chr4_2:55898261-55898280 | None:intergenic | 40.0% | |
TGGGAACAAAACCCAAGAAA+TGG | - | chr4_2:55898373-55898392 | Msa0608700:three_prime_UTR | 40.0% | |
!! | CAAGCACTGAAACCATTTCT+TGG | + | chr4_2:55898388-55898407 | None:intergenic | 40.0% |
TTCCCACCAAACAAAATCAG+AGG | - | chr4_2:55898439-55898458 | Msa0608700:three_prime_UTR | 40.0% | |
!! | TAACTTGTTCCGTGGCAAAT+GGG | - | chr4_2:55898520-55898539 | Msa0608700:three_prime_UTR | 40.0% |
! | CAAGTTGAAGGGTTATAGAG+AGG | + | chr4_2:55898563-55898582 | None:intergenic | 40.0% |
ATGGCATCCACCTATATTTC+TGG | + | chr4_2:55898643-55898662 | None:intergenic | 40.0% | |
TAGAATTTGGTACAGCAGCA+TGG | + | chr4_2:55898866-55898885 | None:intergenic | 40.0% | |
! | TCTTCAGTCACATTTGAGGT+TGG | - | chr4_2:55898915-55898934 | Msa0608700:intron | 40.0% |
!! | TACAAATGTCGGTGTTGTGT+CGG | + | chr4_2:55899011-55899030 | None:intergenic | 40.0% |
ACCTTGAGGTTAGAACATGA+TGG | - | chr4_2:55899313-55899332 | Msa0608700:CDS | 40.0% | |
ACCATCATGTTCTAACCTCA+AGG | + | chr4_2:55899317-55899336 | None:intergenic | 40.0% | |
! | GAATTGATGTGATTGGTTGG+AGG | - | chr4_2:55899376-55899395 | Msa0608700:CDS | 40.0% |
AGAAAATGTCCCCAACACAA+AGG | + | chr4_2:55899406-55899425 | None:intergenic | 40.0% | |
! | ATTTGCTGAAACAGGACCAT+GGG | + | chr4_2:55900175-55900194 | None:intergenic | 40.0% |
AAGCTTGACTCAATCAAGAG+TGG | - | chr4_2:55900582-55900601 | Msa0608700:intron | 40.0% | |
! | ATGTGTTGATCTTCAACACG+TGG | - | chr4_2:55900625-55900644 | Msa0608700:intron | 40.0% |
!! | AAGAAGACTTTGGTTTGTGC+TGG | + | chr4_2:55900888-55900907 | None:intergenic | 40.0% |
ATATGGTGTGTGGTATTAGG+GGG | - | chr4_2:55901030-55901049 | Msa0608700:CDS | 40.0% | |
TCATGCATGACTTTGTTGGT+TGG | + | chr4_2:55901067-55901086 | None:intergenic | 40.0% | |
TCACTCATGCATGACTTTGT+TGG | + | chr4_2:55901071-55901090 | None:intergenic | 40.0% | |
!! | TTTGGTTTGAAATACCCTGG+AGG | - | chr4_2:55901104-55901123 | Msa0608700:CDS | 40.0% |
! | TTGGTTTGAAATACCCTGGA+GGG | - | chr4_2:55901105-55901124 | Msa0608700:CDS | 40.0% |
AGAAAAGATGCACATCCTGA+AGG | - | chr4_2:55901218-55901237 | Msa0608700:intron | 40.0% | |
! | AGAAGCTGATTCCAAGTATC+AGG | + | chr4_2:55901296-55901315 | None:intergenic | 40.0% |
ATTGGGCAATAAAGGTTGGA+TGG | - | chr4_2:55901457-55901476 | Msa0608700:CDS | 40.0% | |
GATGTAGAGAGAGAAAGAGG+AGG | + | chr4_2:55898262-55898281 | None:intergenic | 45.0% | |
!! | GGAACATGTAACTTGTTCCG+TGG | - | chr4_2:55898512-55898531 | Msa0608700:three_prime_UTR | 45.0% |
!! | GTAACTTGTTCCGTGGCAAA+TGG | - | chr4_2:55898519-55898538 | Msa0608700:three_prime_UTR | 45.0% |
GCACGGACACTCTTTGAATT+AGG | - | chr4_2:55898979-55898998 | Msa0608700:intron | 45.0% | |
!! | ACAAATGTCGGTGTTGTGTC+GGG | + | chr4_2:55899010-55899029 | None:intergenic | 45.0% |
AACGAACATCAGACACGACA+TGG | + | chr4_2:55899090-55899109 | None:intergenic | 45.0% | |
TTGGAGGCTTTCCTTTGTGT+TGG | - | chr4_2:55899392-55899411 | Msa0608700:CDS | 45.0% | |
TGGAGGCTTTCCTTTGTGTT+GGG | - | chr4_2:55899393-55899412 | Msa0608700:CDS | 45.0% | |
! | CATTTGCTGAAACAGGACCA+TGG | + | chr4_2:55900176-55900195 | None:intergenic | 45.0% |
CAGATTTACTGGTAGGTGGT+AGG | + | chr4_2:55900236-55900255 | None:intergenic | 45.0% | |
TCTATACCGCACAGCATACT+TGG | - | chr4_2:55900524-55900543 | Msa0608700:intron | 45.0% | |
CAATCAAGAGTGGTGAAGCT+TGG | - | chr4_2:55900592-55900611 | Msa0608700:intron | 45.0% | |
TGATCTTCAACACGTGGCAT+TGG | - | chr4_2:55900631-55900650 | Msa0608700:intron | 45.0% | |
AAGGACTACAAACTTGGGCT+AGG | - | chr4_2:55900841-55900860 | Msa0608700:intron | 45.0% | |
! | ACTACAAACTTGGGCTAGGT+GGG | - | chr4_2:55900845-55900864 | Msa0608700:intron | 45.0% |
!! | TGGTGAACAAGGTGTTGAGA+AGG | - | chr4_2:55901147-55901166 | Msa0608700:intron | 45.0% |
GCACATCCTGAAGGTTATAG+TGG | - | chr4_2:55901227-55901246 | Msa0608700:intron | 45.0% | |
TTCCTGGACTTCCTGATACT+TGG | - | chr4_2:55901282-55901301 | Msa0608700:CDS | 45.0% | |
TTCCAAGTATCAGGAAGTCC+AGG | + | chr4_2:55901287-55901306 | None:intergenic | 45.0% | |
!! | TAATGAATTAAAAAAATATT+AGG | + | chr4_2:55900074-55900093 | None:intergenic | 5.0% |
GGAGGCTTTCCTTTGTGTTG+GGG | - | chr4_2:55899394-55899413 | Msa0608700:CDS | 50.0% | |
ATACCGCACAGCATACTTGG+TGG | - | chr4_2:55900527-55900546 | Msa0608700:intron | 50.0% | |
AAGAGTGGTGAAGCTTGGAG+AGG | - | chr4_2:55900597-55900616 | Msa0608700:intron | 50.0% | |
TGGTGAAGCTTGGAGAGGAA+TGG | - | chr4_2:55900602-55900621 | Msa0608700:intron | 50.0% | |
! | TCTTCAACACGTGGCATTGG+TGG | - | chr4_2:55900634-55900653 | Msa0608700:intron | 50.0% |
! | GACTACAAACTTGGGCTAGG+TGG | - | chr4_2:55900844-55900863 | Msa0608700:intron | 50.0% |
GTGGTATTAGGGGGAGAGAT+TGG | - | chr4_2:55901039-55901058 | Msa0608700:CDS | 50.0% | |
TTCACCACCATCCAAGCCAT+TGG | + | chr4_2:55901134-55901153 | None:intergenic | 50.0% | |
TGGCAACTGATTGTAGCCAC+TGG | - | chr4_2:55901255-55901274 | Msa0608700:CDS | 50.0% | |
CGTCGTAGACCCATTTGCCA+CGG | + | chr4_2:55898532-55898551 | None:intergenic | 55.0% | |
GGTCCACCAAGTATGCTGTG+CGG | + | chr4_2:55900533-55900552 | None:intergenic | 55.0% | |
CGGTTGTGAGCTTCCAGTGT+GGG | + | chr4_2:55900661-55900680 | None:intergenic | 55.0% | |
ACGGTTGTGAGCTTCCAGTG+TGG | + | chr4_2:55900662-55900681 | None:intergenic | 55.0% | |
CACTGGAAGCTCACAACCGT+AGG | - | chr4_2:55900662-55900681 | Msa0608700:intron | 55.0% | |
ATACCCTGGAGGGACACCAA+TGG | - | chr4_2:55901115-55901134 | Msa0608700:CDS | 55.0% | |
! | AAGCCATTGGTGTCCCTCCA+GGG | + | chr4_2:55901121-55901140 | None:intergenic | 55.0% |
! | AGGGACACCAATGGCTTGGA+TGG | - | chr4_2:55901124-55901143 | Msa0608700:CDS | 55.0% |
! | GACACCAATGGCTTGGATGG+TGG | - | chr4_2:55901127-55901146 | Msa0608700:CDS | 55.0% |
! | GGCTTGGATGGTGGTGAACA+AGG | - | chr4_2:55901136-55901155 | Msa0608700:CDS | 55.0% |
TGTAGCCACTGGTGTCTTCC+TGG | - | chr4_2:55901266-55901285 | Msa0608700:CDS | 55.0% | |
GAAGTCCAGGAAGACACCAG+TGG | + | chr4_2:55901274-55901293 | None:intergenic | 55.0% | |
!! | TGGCATTGGTGGACCCACAC+TGG | - | chr4_2:55900645-55900664 | Msa0608700:intron | 60.0% |
! | CAAGCCATTGGTGTCCCTCC+AGG | + | chr4_2:55901122-55901141 | None:intergenic | 60.0% |
CTGGAGGGACACCAATGGCT+TGG | - | chr4_2:55901120-55901139 | Msa0608700:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_2 | gene | 55898253 | 55901664 | 55898253 | ID=Msa0608700;Name=Msa0608700 |
chr4_2 | mRNA | 55898253 | 55901664 | 55898253 | ID=Msa0608700-mRNA-1;Parent=Msa0608700;Name=Msa0608700-mRNA-1;_AED=0.09;_eAED=0.09;_QI=139|1|1|1|1|1|5|327|361 |
chr4_2 | exon | 55898253 | 55898868 | 55898253 | ID=Msa0608700-mRNA-1:exon:14349;Parent=Msa0608700-mRNA-1 |
chr4_2 | exon | 55898983 | 55899141 | 55898983 | ID=Msa0608700-mRNA-1:exon:14348;Parent=Msa0608700-mRNA-1 |
chr4_2 | exon | 55899238 | 55899413 | 55899238 | ID=Msa0608700-mRNA-1:exon:14347;Parent=Msa0608700-mRNA-1 |
chr4_2 | exon | 55900985 | 55901156 | 55900985 | ID=Msa0608700-mRNA-1:exon:14346;Parent=Msa0608700-mRNA-1 |
chr4_2 | exon | 55901236 | 55901664 | 55901236 | ID=Msa0608700-mRNA-1:exon:14345;Parent=Msa0608700-mRNA-1 |
chr4_2 | five_prime_UTR | 55901526 | 55901664 | 55901526 | ID=Msa0608700-mRNA-1:five_prime_utr;Parent=Msa0608700-mRNA-1 |
chr4_2 | CDS | 55901236 | 55901525 | 55901236 | ID=Msa0608700-mRNA-1:cds;Parent=Msa0608700-mRNA-1 |
chr4_2 | CDS | 55900985 | 55901156 | 55900985 | ID=Msa0608700-mRNA-1:cds;Parent=Msa0608700-mRNA-1 |
chr4_2 | CDS | 55899238 | 55899413 | 55899238 | ID=Msa0608700-mRNA-1:cds;Parent=Msa0608700-mRNA-1 |
chr4_2 | CDS | 55898983 | 55899141 | 55898983 | ID=Msa0608700-mRNA-1:cds;Parent=Msa0608700-mRNA-1 |
chr4_2 | CDS | 55898580 | 55898868 | 55898580 | ID=Msa0608700-mRNA-1:cds;Parent=Msa0608700-mRNA-1 |
chr4_2 | three_prime_UTR | 55898253 | 55898579 | 55898253 | ID=Msa0608700-mRNA-1:three_prime_utr;Parent=Msa0608700-mRNA-1 |
Gene Sequence |
Protein sequence |