AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0649200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649200 MtrunA17_Chr4g0041011 97.534 365 5 1 1 361 1 365 0.0 748
Msa0649200 MtrunA17_Chr2g0325481 75.783 351 77 1 17 359 16 366 0.0 566
Msa0649200 MtrunA17_Chr2g0283581 59.322 354 139 4 10 360 8 359 5.92e-154 437
Msa0649200 MtrunA17_Chr4g0045951 59.748 318 127 1 43 359 45 362 1.60e-142 408
Msa0649200 MtrunA17_Chr4g0045941 58.255 321 133 1 40 359 30 350 7.51e-140 401
Msa0649200 MtrunA17_Chr3g0097891 55.937 320 138 2 43 359 31 350 3.08e-135 389
Msa0649200 MtrunA17_Chr2g0314801 56.289 318 135 3 43 356 33 350 9.60e-132 380
Msa0649200 MtrunA17_Chr5g0413851 51.532 359 159 4 4 359 13 359 1.42e-130 378
Msa0649200 MtrunA17_Chr3g0085071 51.351 333 155 2 30 361 39 365 1.01e-128 373
Msa0649200 MtrunA17_Chr3g0091031 50.000 332 159 2 31 361 25 350 8.15e-125 363
Msa0649200 MtrunA17_Chr3g0085081 49.699 332 160 2 31 361 25 350 9.58e-124 360
Msa0649200 MtrunA17_Chr5g0430371 46.499 357 166 5 28 359 43 399 2.76e-117 345
Msa0649200 MtrunA17_Chr3g0105301 49.254 335 153 4 42 359 42 376 1.31e-116 343
Msa0649200 MtrunA17_Chr2g0314791 47.401 327 152 6 43 359 29 345 3.09e-105 313
Msa0649200 MtrunA17_Chr1g0175671 38.859 368 198 6 16 359 145 509 1.46e-88 276
Msa0649200 MtrunA17_Chr1g0171171 39.881 336 180 7 38 359 48 375 5.99e-88 270
Msa0649200 MtrunA17_Chr7g0258851 40.643 342 176 7 43 359 248 587 4.65e-86 271
Msa0649200 MtrunA17_Chr1g0210771 36.842 361 194 10 23 359 32 382 1.02e-83 259
Msa0649200 MtrunA17_Chr4g0068111 37.901 343 186 8 42 359 113 453 4.33e-80 252
Msa0649200 MtrunA17_Chr5g0437291 38.329 347 184 9 43 359 165 511 5.13e-80 253
Msa0649200 MtrunA17_Chr4g0071391 33.242 364 219 7 18 359 85 446 8.39e-80 251
Msa0649200 MtrunA17_Chr3g0113671 38.372 344 185 9 43 359 106 449 1.67e-79 250
Msa0649200 MtrunA17_Chr1g0213281 36.782 348 192 7 38 359 170 515 1.96e-79 252
Msa0649200 MtrunA17_Chr7g0269991 36.905 336 188 8 43 359 137 467 3.36e-78 248
Msa0649200 MtrunA17_Chr3g0114101 37.318 343 188 9 43 359 89 430 6.12e-76 241
Msa0649200 MtrunA17_Chr5g0437601 36.182 351 199 7 34 359 74 424 6.62e-75 238
Msa0649200 MtrunA17_Chr4g0006991 34.795 342 198 7 43 359 86 427 6.23e-74 235
Msa0649200 MtrunA17_Chr8g0360521 36.000 350 188 10 39 359 67 409 8.48e-74 234
Msa0649200 MtrunA17_Chr5g0413271 32.665 349 218 4 27 359 129 476 1.25e-72 233
Msa0649200 MtrunA17_Chr8g0368461 33.705 359 202 7 36 359 171 528 1.85e-70 229
Msa0649200 MtrunA17_Chr4g0005491 31.854 383 231 9 8 361 28 409 3.98e-69 222
Msa0649200 MtrunA17_Chr3g0126021 37.609 343 189 8 37 359 122 459 2.17e-68 222
Msa0649200 MtrunA17_Chr7g0259711 35.756 344 192 9 43 359 91 432 2.42e-68 221
Msa0649200 MtrunA17_Chr7g0243301 31.620 389 232 11 1 359 25 409 6.42e-68 219
Msa0649200 MtrunA17_Chr1g0209921 48.035 229 112 6 40 264 41 266 6.92e-68 214
Msa0649200 MtrunA17_Chr2g0287901 34.694 343 198 7 40 357 94 435 1.66e-67 219
Msa0649200 MtrunA17_Chr4g0005481 34.795 342 197 8 42 359 107 446 8.11e-67 217
Msa0649200 MtrunA17_Chr7g0242701 35.965 342 194 7 43 359 86 427 1.64e-66 216
Msa0649200 MtrunA17_Chr8g0384151 32.344 337 198 9 43 359 90 416 1.60e-57 192
Msa0649200 MtrunA17_Chr1g0178081 30.831 373 171 12 12 359 31 341 5.91e-47 163
Msa0649200 MtrunA17_Chr4g0049421 29.395 347 205 13 43 355 48 388 3.38e-38 140
Msa0649200 MtrunA17_Chr6g0455901 30.352 369 218 12 27 360 53 417 1.91e-37 139
Msa0649200 MtrunA17_Chr6g0476041 27.869 366 209 11 37 359 161 514 1.45e-36 138
Msa0649200 MtrunA17_Chr1g0188191 29.577 355 197 14 43 355 234 577 4.42e-35 135
Msa0649200 MtrunA17_Chr8g0384421 29.752 363 216 15 28 359 118 472 1.03e-34 132
Msa0649200 MtrunA17_Chr5g0414051 30.899 356 197 16 43 359 75 420 6.79e-34 130
Msa0649200 MtrunA17_Chr6g0456691 27.500 400 239 13 1 359 30 419 9.88e-33 126
Msa0649200 MtrunA17_Chr5g0414061 29.143 350 210 13 43 359 94 438 5.95e-32 124
Msa0649200 MtrunA17_Chr5g0414091 29.429 350 213 12 42 359 84 431 9.23e-32 124
Msa0649200 MtrunA17_Chr7g0226991 27.851 377 231 13 17 359 33 402 1.47e-30 120
Msa0649200 MtrunA17_Chr6g0456681 26.781 351 217 10 43 359 64 408 1.88e-30 120
Msa0649200 MtrunA17_Chr8g0391481 27.920 351 218 10 43 361 27 374 1.20e-29 117
Msa0649200 MtrunA17_Chr5g0414041 28.329 353 213 11 42 359 86 433 2.27e-29 117
Msa0649200 MtrunA17_Chr4g0070341 26.882 372 211 14 27 359 122 471 2.52e-29 117
Msa0649200 MtrunA17_Chr2g0283851 27.350 351 223 9 36 355 47 396 3.89e-29 116
Msa0649200 MtrunA17_Chr8g0347321 26.972 393 220 16 15 359 66 439 7.65e-29 116
Msa0649200 MtrunA17_Chr3g0085101 42.982 114 64 1 227 339 1 114 1.32e-26 102
Msa0649200 MtrunA17_Chr3g0140371 28.814 354 204 15 43 359 18 360 2.22e-26 108
Msa0649200 MtrunA17_Chr6g0451321 27.066 351 215 10 42 359 115 457 8.72e-26 107
Msa0649200 MtrunA17_Chr8g0387921 24.438 356 218 9 40 355 71 415 9.52e-24 101
Msa0649200 MtrunA17_Chr7g0221291 40.196 102 61 0 30 131 66 167 2.34e-19 84.3
Msa0649200 MtrunA17_Chr7g0221271 32.857 140 94 0 30 169 66 205 3.58e-19 84.7
Msa0649200 MtrunA17_Chr1g0209931 44.944 89 40 3 275 359 9 92 1.26e-16 74.7
Msa0649200 MtrunA17_Chr5g0429211 47.368 76 40 0 97 172 194 269 1.51e-15 76.3
Msa0649200 MtrunA17_Chr2g0287911 45.763 59 25 1 40 98 58 109 2.26e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649200 AT2G42570.1 63.855 332 119 1 29 359 33 364 1.80e-166 469
Msa0649200 AT2G31110.2 58.659 358 144 3 6 360 7 363 3.00e-163 461
Msa0649200 AT1G29050.1 61.491 322 123 1 40 360 58 379 2.01e-155 442
Msa0649200 AT2G34070.1 61.250 320 122 2 43 360 65 384 1.01e-149 427
Msa0649200 AT3G14850.2 57.009 321 134 3 40 356 31 351 1.47e-133 385
Msa0649200 AT1G78710.1 50.440 341 162 5 23 359 19 356 1.27e-124 363
Msa0649200 AT2G30900.1 50.769 325 154 4 43 361 43 367 3.01e-120 352
Msa0649200 AT2G34070.2 61.200 250 95 2 113 360 1 250 1.91e-113 330
Msa0649200 AT5G58600.1 48.214 336 156 5 42 359 65 400 8.46e-110 327
Msa0649200 AT2G31110.3 56.693 254 107 2 6 257 7 259 2.19e-106 313
Msa0649200 AT2G30010.1 42.328 378 194 5 6 359 19 396 1.93e-103 310
Msa0649200 AT2G30010.2 42.328 378 194 5 6 359 62 439 4.41e-103 311
Msa0649200 AT2G31110.1 63.462 208 75 1 154 360 8 215 3.57e-102 300
Msa0649200 AT3G14850.1 56.048 248 105 3 113 356 1 248 3.44e-96 286
Msa0649200 AT1G78710.2 41.944 360 141 7 4 359 1 296 3.05e-93 281
Msa0649200 AT5G06700.1 41.096 365 190 6 19 359 231 594 2.13e-90 283
Msa0649200 AT3G54260.1 39.940 333 175 6 43 359 51 374 8.12e-86 265
Msa0649200 AT3G12060.1 39.474 342 182 5 42 359 195 535 1.65e-85 269
Msa0649200 AT2G30900.2 52.511 219 102 2 43 259 43 261 9.61e-84 256
Msa0649200 AT3G62390.1 38.166 338 188 6 43 361 138 473 3.53e-81 256
Msa0649200 AT5G58600.2 50.667 225 109 2 42 264 65 289 5.52e-79 244
Msa0649200 AT5G49340.1 36.544 353 181 7 41 359 98 441 6.18e-79 249
Msa0649200 AT3G55990.1 35.792 366 206 9 21 359 120 483 5.02e-78 248
Msa0649200 AT5G20590.1 35.882 340 194 7 43 359 141 479 1.24e-77 247
Msa0649200 AT1G73140.1 37.209 344 186 10 42 359 66 405 1.93e-75 239
Msa0649200 AT2G40160.2 35.714 350 193 9 43 361 77 425 2.50e-75 239
Msa0649200 AT2G40160.1 35.756 344 189 9 43 355 77 419 8.03e-75 238
Msa0649200 AT1G60790.1 36.047 344 192 7 43 359 190 532 2.39e-74 240
Msa0649200 AT2G40150.1 34.571 350 196 8 43 359 71 420 6.61e-74 235
Msa0649200 AT3G11030.1 35.694 353 199 9 34 359 97 448 2.51e-72 232
Msa0649200 AT5G01620.2 34.571 350 202 8 35 359 102 449 8.61e-72 231
Msa0649200 AT5G01620.1 34.571 350 202 8 35 359 102 449 8.61e-72 231
Msa0649200 AT5G01620.3 34.571 350 202 8 35 359 110 457 1.20e-71 230
Msa0649200 AT2G40320.1 34.521 365 214 8 20 359 58 422 2.60e-71 229
Msa0649200 AT5G01360.2 34.985 343 197 8 43 359 36 378 1.44e-70 225
Msa0649200 AT5G01360.1 34.985 343 197 8 43 359 92 434 5.62e-70 225
Msa0649200 AT2G38320.1 32.216 388 233 9 1 359 18 404 7.49e-70 224
Msa0649200 AT5G19160.1 34.109 387 203 10 19 357 60 442 1.14e-69 226
Msa0649200 AT3G06080.2 35.380 342 193 8 43 357 103 443 7.82e-68 221
Msa0649200 AT1G48880.1 35.310 371 215 9 1 355 74 435 2.64e-66 216
Msa0649200 AT5G06230.2 36.000 350 193 10 39 359 17 364 7.95e-66 213
Msa0649200 AT5G06230.1 36.000 350 193 10 39 359 58 405 2.28e-65 213
Msa0649200 AT3G11570.1 36.223 323 183 6 59 359 98 419 2.27e-64 211
Msa0649200 AT2G38320.2 31.761 318 189 7 70 359 4 321 3.88e-56 186
Msa0649200 AT3G62390.2 36.709 237 138 3 43 267 138 374 6.45e-55 186
Msa0649200 AT2G40160.3 37.179 234 135 5 43 264 77 310 2.97e-52 176
Msa0649200 AT5G20590.2 35.294 238 140 5 43 266 141 378 2.90e-51 175
Msa0649200 AT5G19160.2 33.935 277 154 5 19 266 60 336 3.81e-49 169
Msa0649200 AT3G06080.1 35.714 238 139 4 43 266 103 340 1.80e-46 162
Msa0649200 AT5G06230.3 35.081 248 141 5 39 266 58 305 2.05e-44 155
Msa0649200 AT2G14530.1 29.973 367 215 10 28 359 47 406 5.73e-42 151
Msa0649200 AT5G64470.3 29.799 349 212 12 36 355 46 390 6.31e-40 145
Msa0649200 AT5G64470.2 29.775 356 209 14 36 355 46 396 4.56e-38 141
Msa0649200 AT1G70230.1 29.412 340 210 10 43 359 79 411 5.50e-38 141
Msa0649200 AT5G51640.1 27.249 389 227 12 16 359 111 488 3.00e-36 137
Msa0649200 AT4G25360.1 27.632 380 222 13 20 355 150 520 9.19e-36 137
Msa0649200 AT4G25360.2 27.632 380 222 13 20 355 150 520 9.19e-36 137
Msa0649200 AT5G64020.1 29.444 360 205 15 42 359 56 408 3.94e-34 130
Msa0649200 AT2G37720.1 29.640 361 191 15 42 359 142 482 2.06e-32 127
Msa0649200 AT5G15900.1 25.862 406 242 14 1 359 16 409 3.24e-32 125
Msa0649200 AT5G15900.2 25.862 406 242 14 1 359 35 428 4.49e-32 125
Msa0649200 AT3G28150.1 27.577 388 244 13 5 361 31 412 2.49e-31 123
Msa0649200 AT1G01430.1 25.532 376 236 11 22 359 78 447 3.52e-30 120
Msa0649200 AT5G20680.6 27.855 359 198 15 43 359 118 457 7.05e-30 119
Msa0649200 AT5G20680.2 27.577 359 199 14 43 359 194 533 1.16e-29 119
Msa0649200 AT5G20680.4 27.577 359 199 14 43 359 212 551 1.17e-29 120
Msa0649200 AT5G20680.1 27.577 359 199 14 43 359 212 551 1.17e-29 120
Msa0649200 AT5G20680.3 27.577 359 199 14 43 359 212 551 1.17e-29 120
Msa0649200 AT5G20680.5 27.577 359 199 14 43 359 212 551 1.17e-29 120
Msa0649200 AT3G02440.2 24.928 349 223 10 43 359 135 476 7.13e-29 117
Msa0649200 AT3G02440.1 24.928 349 223 10 43 359 127 468 7.25e-29 117
Msa0649200 AT5G15890.1 26.724 348 204 12 43 355 187 518 6.16e-27 112
Msa0649200 AT5G64470.4 29.213 267 164 10 36 281 46 308 2.78e-24 101
Msa0649200 AT5G64470.1 29.213 267 164 10 36 281 46 308 4.19e-24 101
Msa0649200 AT4G01080.1 25.143 350 217 12 40 355 88 426 8.45e-24 102
Msa0649200 AT4G11090.1 24.866 374 223 13 30 359 66 425 1.49e-23 101
Msa0649200 AT4G23790.1 24.929 353 225 11 43 359 79 427 1.59e-21 95.5

Find 101 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAAATTGAAAACATATT+TGG 0.172908 4_3:-55798420 None:intergenic
CTGAATGTGCTTCTAGAATT+TGG 0.184720 4_3:-55795437 None:intergenic
AACATATTTGGTACAATTAA+AGG 0.190331 4_3:-55798408 None:intergenic
CAAACCAAAGTCTTCTTCTT+AGG 0.227258 4_3:+55797773 Msa0649200:CDS
ATGGCATCCACCTATATTTC+TGG 0.239401 4_3:-55795201 None:intergenic
GATGTTTCGGTTCTTGTAAT+TGG 0.248803 4_3:+55798321 Msa0649200:three_prime_UTR
TGTAGCCACTGGTGTCTTCC+TGG 0.277598 4_3:+55798148 Msa0649200:CDS
AGTGAGAAAGTGCCATATTT+TGG 0.279871 4_3:+55797968 Msa0649200:CDS
TTCTTGTAATTGGGCAATAA+AGG 0.288308 4_3:+55798331 Msa0649200:three_prime_UTR
CTTGGCATGTTACAAGAAAA+TGG 0.318130 4_3:-55795220 None:intergenic
AGAAGCTGATTCCAAGTATC+AGG 0.322948 4_3:-55798175 None:intergenic
CAAGCACTGAAACCATTTCT+TGG 0.325936 4_3:-55794946 None:intergenic
GGGTATTTCAAACCAAAATA+TGG 0.332479 4_3:-55797980 None:intergenic
GACAAATTAATTTGTTTGTA+AGG 0.347307 4_3:+55798242 Msa0649200:three_prime_UTR
ATGTTTCGGTTCTTGTAATT+GGG 0.353987 4_3:+55798322 Msa0649200:three_prime_UTR
ATTGTAAATGTTCATTGTTT+AGG 0.354264 4_3:+55798375 Msa0649200:three_prime_UTR
TGACAGATGGGATTATATTC+AGG 0.367092 4_3:+55797652 Msa0649200:intron
TTCCTGGACTTCCTGATACT+TGG 0.369841 4_3:+55798164 Msa0649200:CDS
TCACTCATGCATGACTTTGT+TGG 0.371357 4_3:-55797950 None:intergenic
TAGTATATCTTGGAAGGATT+TGG 0.383203 4_3:+55798442 Msa0649200:three_prime_UTR
ATAAGCTTTACCAGAAATAT+AGG 0.384304 4_3:+55795191 Msa0649200:CDS
AAATATTTGATTTGATGTTT+CGG 0.386273 4_3:+55798308 Msa0649200:three_prime_UTR
TCAATTTGAATAGTATATCT+TGG 0.396256 4_3:+55798432 Msa0649200:three_prime_UTR
GTCACATCTAAGAAATAAAC+TGG 0.411760 4_3:-55798061 None:intergenic
AAGCACTGAAACCATTTCTT+GGG 0.414434 4_3:-55794945 None:intergenic
AAGAAGACTTTGGTTTGTGC+TGG 0.422122 4_3:-55797767 None:intergenic
GGGAAGAAGATTATGTTTGT+TGG 0.424391 4_3:+55795356 Msa0649200:CDS
CAAGCCATTGGTGTCCCTCC+AGG 0.427641 4_3:-55798001 None:intergenic
TTTGAAGTCAGTAACATTGC+AGG 0.428295 4_3:+55795052 Msa0649200:CDS
AACTTTCTGAAGGGTAATAG+AGG 0.429506 4_3:+55795335 Msa0649200:CDS
TCTATACCGCACAGCATACT+TGG 0.433438 4_3:+55797406 Msa0649200:CDS
TGAAGGTTATAGTGGTGTTA+TGG 0.434673 4_3:+55798117 Msa0649200:CDS
GTAACTTGTTCCGTGGCAAA+TGG 0.439848 4_3:+55795080 Msa0649200:CDS
TATCTCTTCAGTCACATTTG+AGG 0.440220 4_3:+55795472 Msa0649200:CDS
GTCCTTCTTTATCATGATCA+AGG 0.442671 4_3:-55797433 None:intergenic
TCTACAAAGGACTACAAACT+TGG 0.453097 4_3:+55797717 Msa0649200:CDS
TGGGAACAAAACCCAAGAAA+TGG 0.453731 4_3:+55794934 Msa0649200:exon
TACAAGCTAACGAATTGAAC+TGG 0.455479 4_3:-55795397 None:intergenic
TGTAATTGGGCAATAAAGGT+TGG 0.457607 4_3:+55798335 Msa0649200:three_prime_UTR
AAATTGTTTCGCAGGTTCAA+TGG 0.460433 4_3:+55795308 Msa0649200:intron
AATTCCTAAGAAGAAGACTT+TGG 0.470232 4_3:-55797777 None:intergenic
TATTATATAAGAACATGATT+AGG 0.472698 4_3:+55794856 Msa0649200:five_prime_UTR
CAAATCAAAAGCTTTAGAAA+AGG 0.480949 4_3:-55798499 None:intergenic
AATGTTACTGACTTCAAAGT+TGG 0.485805 4_3:-55795047 None:intergenic
AAAGATGTAGAGAGAGAAAG+AGG 0.494136 4_3:-55794823 None:intergenic
CAATCAAGAGTGGTGAAGCT+TGG 0.495413 4_3:+55797474 Msa0649200:CDS
AGGGACACCAATGGCTTGGA+TGG 0.502776 4_3:+55798006 Msa0649200:CDS
TTTGAATAGTATATCTTGGA+AGG 0.504986 4_3:+55798436 Msa0649200:three_prime_UTR
TCTTCAACACGTGGCATTGG+TGG 0.505890 4_3:+55797516 Msa0649200:CDS
TAACTTGTTCCGTGGCAAAT+GGG 0.506637 4_3:+55795081 Msa0649200:CDS
GCACATCCTGAAGGTTATAG+TGG 0.507023 4_3:+55798109 Msa0649200:CDS
ATGTAGAGAGAGAAAGAGGA+GGG 0.509507 4_3:-55794819 None:intergenic
CAATGGTTTGAACTTTCTGA+AGG 0.510925 4_3:+55795325 Msa0649200:CDS
ATAACACCACTATAACCTTC+AGG 0.516042 4_3:-55798115 None:intergenic
TTTCCTAAATTAGAAAACAA+TGG 0.522042 4_3:-55798288 None:intergenic
CGGTTGTGAGCTTCCAGTGT+GGG 0.524560 4_3:-55797540 None:intergenic
ACAAACAAATTAATTTGTCA+AGG 0.527207 4_3:-55798238 None:intergenic
TTGGTTTGAAATACCCTGGA+GGG 0.527368 4_3:+55797987 Msa0649200:CDS
TGGTGAAGCTTGGAGAGGAA+TGG 0.527447 4_3:+55797484 Msa0649200:CDS
CTGGAGGGACACCAATGGCT+TGG 0.529625 4_3:+55798002 Msa0649200:CDS
TTCACCACCATCCAAGCCAT+TGG 0.532920 4_3:-55798013 None:intergenic
TCTATGAAAGGACAAGTTGA+AGG 0.533615 4_3:-55795133 None:intergenic
ATAACTTACTGGTAATGTAC+AGG 0.538647 4_3:-55797803 None:intergenic
TGATCTTCAACACGTGGCAT+TGG 0.541024 4_3:+55797513 Msa0649200:CDS
TCATGCATGACTTTGTTGGT+TGG 0.542003 4_3:-55797946 None:intergenic
CAAGTTGAAGGGTTATAGAG+AGG 0.546976 4_3:-55795121 None:intergenic
TTCCAAGTATCAGGAAGTCC+AGG 0.548161 4_3:-55798166 None:intergenic
TAGAATTTGGTACAGCAGCA+TGG 0.554694 4_3:-55795424 None:intergenic
TTCCCACCAAACAAAATCAG+AGG 0.559578 4_3:+55795000 Msa0649200:CDS
GACCTTGATCATGATAAAGA+AGG 0.566545 4_3:+55797431 Msa0649200:CDS
GACTACAAACTTGGGCTAGG+TGG 0.570817 4_3:+55797726 Msa0649200:CDS
ACTACAAACTTGGGCTAGGT+GGG 0.578379 4_3:+55797727 Msa0649200:CDS
AAGCCATTGGTGTCCCTCCA+GGG 0.581911 4_3:-55798000 None:intergenic
CTACAAAGGACTACAAACTT+GGG 0.582833 4_3:+55797718 Msa0649200:CDS
TGGCATTGGTGGACCCACAC+TGG 0.584418 4_3:+55797527 Msa0649200:CDS
ATACCGCACAGCATACTTGG+TGG 0.586879 4_3:+55797409 Msa0649200:CDS
TTGAACTGTGGATCTATGAA+AGG 0.589879 4_3:-55795145 None:intergenic
GGCTTGGATGGTGGTGAACA+AGG 0.591402 4_3:+55798018 Msa0649200:CDS
ATTGGGCAATAAAGGTTGGA+TGG 0.593271 4_3:+55798339 Msa0649200:three_prime_UTR
AATGGTTTGAACTTTCTGAA+GGG 0.597673 4_3:+55795326 Msa0649200:CDS
AGAAAAGATGCACATCCTGA+AGG 0.597997 4_3:+55798100 Msa0649200:CDS
GATGTAGAGAGAGAAAGAGG+AGG 0.602883 4_3:-55794820 None:intergenic
AAGGACTACAAACTTGGGCT+AGG 0.603384 4_3:+55797723 Msa0649200:CDS
GACACCAATGGCTTGGATGG+TGG 0.610440 4_3:+55798009 Msa0649200:CDS
CAGTTCAATTGTCAGAAACA+TGG 0.617132 4_3:+55795160 Msa0649200:CDS
ACTTTCTGAAGGGTAATAGA+GGG 0.617389 4_3:+55795336 Msa0649200:CDS
TGGCAACTGATTGTAGCCAC+TGG 0.618075 4_3:+55798137 Msa0649200:CDS
CTATGAAAGGACAAGTTGAA+GGG 0.623253 4_3:-55795132 None:intergenic
TGGTGAACAAGGTGTTGAGA+AGG 0.632793 4_3:+55798029 Msa0649200:CDS
ATACCCTGGAGGGACACCAA+TGG 0.646199 4_3:+55797997 Msa0649200:CDS
AGCTTTACCAGAAATATAGG+TGG 0.648575 4_3:+55795194 Msa0649200:CDS
ACGGTTGTGAGCTTCCAGTG+TGG 0.657143 4_3:-55797541 None:intergenic
AAGCTTGACTCAATCAAGAG+TGG 0.662012 4_3:+55797464 Msa0649200:CDS
CGTCGTAGACCCATTTGCCA+CGG 0.673142 4_3:-55795090 None:intergenic
AAGAGTGGTGAAGCTTGGAG+AGG 0.679537 4_3:+55797479 Msa0649200:CDS
GGAACATGTAACTTGTTCCG+TGG 0.681608 4_3:+55795073 Msa0649200:CDS
TGTTTCTGACAATTGAACTG+TGG 0.711026 4_3:-55795157 None:intergenic
TTTGGTTTGAAATACCCTGG+AGG 0.715369 4_3:+55797986 Msa0649200:CDS
GAAGTCCAGGAAGACACCAG+TGG 0.726350 4_3:-55798153 None:intergenic
ATGTGTTGATCTTCAACACG+TGG 0.756788 4_3:+55797507 Msa0649200:CDS
GGTCCACCAAGTATGCTGTG+CGG 0.774384 4_3:-55797412 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTTATTTTGAG+AGG - chr4_3:55796672-55796691 None:intergenic 10.0%
!!! AAAAAAATATTAGGATTTTT+TGG - chr4_3:55796943-55796962 None:intergenic 10.0%
!! TATTATATAAGAACATGATT+AGG + chr4_3:55794856-55794875 Msa0649200:five_prime_UTR 15.0%
!!! GATTTTTTTTGAATGAAAAA+AGG - chr4_3:55794908-55794927 None:intergenic 15.0%
!! ATAATTCAATGTAATTACAA+GGG - chr4_3:55795610-55795629 None:intergenic 15.0%
!!! ATTTTATTTATGATGAAAAG+TGG + chr4_3:55796249-55796268 Msa0649200:intron 15.0%
!!! TATTTTTTTTGTTAAACATC+CGG + chr4_3:55796773-55796792 Msa0649200:intron 15.0%
!!! TAAATGTTATTGTTGTTTTT+AGG + chr4_3:55797364-55797383 Msa0649200:intron 15.0%
!! ATTAGATATTAATAACTTAC+TGG - chr4_3:55797817-55797836 None:intergenic 15.0%
!!! TTAAGCTCTAAAAATATATA+TGG + chr4_3:55797895-55797914 Msa0649200:intron 15.0%
!!! AAATATTTGATTTGATGTTT+CGG + chr4_3:55798308-55798327 Msa0649200:three_prime_UTR 15.0%
!! ATTCAAATTGAAAACATATT+TGG - chr4_3:55798423-55798442 None:intergenic 15.0%
!!! TTTTCATTCAAAAAAAATCG+TGG + chr4_3:55794909-55794928 Msa0649200:five_prime_UTR 20.0%
!! TTTCATTCAAAAAAAATCGT+GGG + chr4_3:55794910-55794929 Msa0649200:five_prime_UTR 20.0%
!! CATAATTCAATGTAATTACA+AGG - chr4_3:55795611-55795630 None:intergenic 20.0%
!!! ACCAATAGTGTTTTTTTAAT+TGG + chr4_3:55795733-55795752 Msa0649200:intron 20.0%
!! ACCAATTAAAAAAACACTAT+TGG - chr4_3:55795737-55795756 None:intergenic 20.0%
!! ATCAACAAAGAGAAAATAAA+CGG + chr4_3:55796116-55796135 Msa0649200:intron 20.0%
!! TAAAATACGTAATGAATTTG+TGG - chr4_3:55796235-55796254 None:intergenic 20.0%
!!! TTTTGAAAATGAAGTAACAA+GGG - chr4_3:55796575-55796594 None:intergenic 20.0%
!!! TTTATTTGACAACGTTTTAT+AGG - chr4_3:55796733-55796752 None:intergenic 20.0%
!!! CAAAGTGTTAATATAAAAAC+CGG - chr4_3:55796795-55796814 None:intergenic 20.0%
!! TTAAATACCAACAAAACTTT+AGG - chr4_3:55796821-55796840 None:intergenic 20.0%
!!! TTTTTTGGAATCCTAAAATT+CGG - chr4_3:55796928-55796947 None:intergenic 20.0%
!! AACATTGAACATTAAGATAA+CGG + chr4_3:55797253-55797272 Msa0649200:intron 20.0%
!! TTAGCATCATTAATTAATCA+TGG - chr4_3:55797608-55797627 None:intergenic 20.0%
!! CTAAAAATATATATGGTGTA+TGG + chr4_3:55797902-55797921 Msa0649200:intron 20.0%
!!! ACAAACAAATTAATTTGTCA+AGG - chr4_3:55798241-55798260 None:intergenic 20.0%
!!! GACAAATTAATTTGTTTGTA+AGG + chr4_3:55798242-55798261 Msa0649200:three_prime_UTR 20.0%
!!! AATCCATTGTTTTCTAATTT+AGG + chr4_3:55798285-55798304 Msa0649200:three_prime_UTR 20.0%
!! TTTCCTAAATTAGAAAACAA+TGG - chr4_3:55798291-55798310 None:intergenic 20.0%
!!! ACATTTACAATTTTAGACAT+TGG - chr4_3:55798366-55798385 None:intergenic 20.0%
!! ATTGTAAATGTTCATTGTTT+AGG + chr4_3:55798375-55798394 Msa0649200:three_prime_UTR 20.0%
!! AACATATTTGGTACAATTAA+AGG - chr4_3:55798411-55798430 None:intergenic 20.0%
!! TCAATTTGAATAGTATATCT+TGG + chr4_3:55798432-55798451 Msa0649200:three_prime_UTR 20.0%
!! TAAAATCCTCTGATTTTGTT+TGG - chr4_3:55795009-55795028 None:intergenic 25.0%
! ATAAGCTTTACCAGAAATAT+AGG + chr4_3:55795191-55795210 Msa0649200:CDS 25.0%
!!! TGTTCTTTTGTTGGTTTTTA+TGG + chr4_3:55795266-55795285 Msa0649200:intron 25.0%
! AAAACAATGAAAGTGAATCA+CGG - chr4_3:55795698-55795717 None:intergenic 25.0%
! CAATAAAGAATTGATGTGAT+TGG + chr4_3:55795945-55795964 Msa0649200:intron 25.0%
! TAAAAAATTGCCACAAAAGT+GGG - chr4_3:55796051-55796070 None:intergenic 25.0%
!!! CTACTCTTTATTTTTTTGAG+AGG + chr4_3:55796147-55796166 Msa0649200:intron 25.0%
! GTTTGAGAAACAATAAAGAA+TGG - chr4_3:55796179-55796198 None:intergenic 25.0%
!!! CTTTTTTATTAGAACAGACA+TGG + chr4_3:55796198-55796217 Msa0649200:intron 25.0%
! ATTTATGATGAAAAGTGGAA+TGG + chr4_3:55796254-55796273 Msa0649200:intron 25.0%
! TTTATGATGAAAAGTGGAAT+GGG + chr4_3:55796255-55796274 Msa0649200:intron 25.0%
!!! GTTTTGAAAATGAAGTAACA+AGG - chr4_3:55796576-55796595 None:intergenic 25.0%
!! GTTTTATAGGATAAAGTTCA+AGG - chr4_3:55796720-55796739 None:intergenic 25.0%
! AATTAATCAGATTTACTGGT+AGG - chr4_3:55797121-55797140 None:intergenic 25.0%
! AAGCAATTAATCAGATTTAC+TGG - chr4_3:55797125-55797144 None:intergenic 25.0%
! AATGTGACTGGTATAATTAT+TGG + chr4_3:55797190-55797209 Msa0649200:intron 25.0%
!!! TATTGTTGTTTTTAGGAGTA+TGG + chr4_3:55797371-55797390 Msa0649200:intron 25.0%
!!! ATTGTTGTTTTTAGGAGTAT+GGG + chr4_3:55797372-55797391 Msa0649200:intron 25.0%
! TTGAAAAATTCATGACAGAT+GGG + chr4_3:55797640-55797659 Msa0649200:intron 25.0%
! TATATATGGTGTATGGTATT+AGG + chr4_3:55797909-55797928 Msa0649200:intron 25.0%
! ATATATGGTGTATGGTATTA+GGG + chr4_3:55797910-55797929 Msa0649200:intron 25.0%
!!! TAAGGTTCTACTTATTTTAG+AGG + chr4_3:55798260-55798279 Msa0649200:three_prime_UTR 25.0%
! TTTGAATAGTATATCTTGGA+AGG + chr4_3:55798436-55798455 Msa0649200:three_prime_UTR 25.0%
!!! CAAATCAAAAGCTTTAGAAA+AGG - chr4_3:55798502-55798521 None:intergenic 25.0%
ATTCAAAAAAAATCGTGGGT+TGG + chr4_3:55794914-55794933 Msa0649200:five_prime_UTR 30.0%
TTCAAAAAAAATCGTGGGTT+GGG + chr4_3:55794915-55794934 Msa0649200:five_prime_UTR 30.0%
!! AATGTTACTGACTTCAAAGT+TGG - chr4_3:55795050-55795069 None:intergenic 30.0%
TGGTAACAAAAATTGTACCT+TGG - chr4_3:55795241-55795260 None:intergenic 30.0%
! ACCATTTTGTGTTCTTTTGT+TGG + chr4_3:55795257-55795276 Msa0649200:intron 30.0%
ACCAACAAAAGAACACAAAA+TGG - chr4_3:55795261-55795280 None:intergenic 30.0%
AATGGTTTGAACTTTCTGAA+GGG + chr4_3:55795326-55795345 Msa0649200:CDS 30.0%
TTCAATGTAATTACAAGGGT+CGG - chr4_3:55795606-55795625 None:intergenic 30.0%
AAAGAATTGATGTGATTGGT+TGG + chr4_3:55795949-55795968 Msa0649200:intron 30.0%
GTAAAAAATTGCCACAAAAG+TGG - chr4_3:55796052-55796071 None:intergenic 30.0%
TTATGATGAAAAGTGGAATG+GGG + chr4_3:55796256-55796275 Msa0649200:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG - chr4_3:55796329-55796348 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG - chr4_3:55796330-55796349 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG + chr4_3:55796450-55796469 Msa0649200:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG + chr4_3:55796478-55796497 Msa0649200:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG + chr4_3:55796479-55796498 Msa0649200:intron 30.0%
CTAGACAAGAAAATGAACTT+TGG + chr4_3:55796645-55796664 Msa0649200:intron 30.0%
!! TTTGACACCTAAAGTTTTGT+TGG + chr4_3:55796811-55796830 Msa0649200:intron 30.0%
! TGAGTAATCAACCGAATTTT+AGG + chr4_3:55796914-55796933 Msa0649200:intron 30.0%
!!! ACGAAACCCTTTTTTTTTCA+TGG + chr4_3:55797026-55797045 Msa0649200:intron 30.0%
ATGGGACCATGAAAAAAAAA+GGG - chr4_3:55797035-55797054 None:intergenic 30.0%
! TTCATTACATTTGCTGAAAC+AGG - chr4_3:55797061-55797080 None:intergenic 30.0%
! TGCTATTTATACAATGTGAC+TGG + chr4_3:55797178-55797197 Msa0649200:intron 30.0%
CTTGAAAAATTCATGACAGA+TGG + chr4_3:55797639-55797658 Msa0649200:intron 30.0%
AATTCCTAAGAAGAAGACTT+TGG - chr4_3:55797780-55797799 None:intergenic 30.0%
! ATAACTTACTGGTAATGTAC+AGG - chr4_3:55797806-55797825 None:intergenic 30.0%
TATATGGTGTATGGTATTAG+GGG + chr4_3:55797911-55797930 Msa0649200:intron 30.0%
GGGTATTTCAAACCAAAATA+TGG - chr4_3:55797983-55798002 None:intergenic 30.0%
!!! TATTTTGGTTTGAAATACCC+TGG + chr4_3:55797983-55798002 Msa0649200:CDS 30.0%
GTCACATCTAAGAAATAAAC+TGG - chr4_3:55798064-55798083 None:intergenic 30.0%
ATGTTTCGGTTCTTGTAATT+GGG + chr4_3:55798322-55798341 Msa0649200:three_prime_UTR 30.0%
TTCTTGTAATTGGGCAATAA+AGG + chr4_3:55798331-55798350 Msa0649200:three_prime_UTR 30.0%
TAGTATATCTTGGAAGGATT+TGG + chr4_3:55798442-55798461 Msa0649200:three_prime_UTR 30.0%
AAAGATGTAGAGAGAGAAAG+AGG - chr4_3:55794826-55794845 None:intergenic 35.0%
!! AAGCACTGAAACCATTTCTT+GGG - chr4_3:55794948-55794967 None:intergenic 35.0%
!! ATCCTCTGATTTTGTTTGGT+GGG - chr4_3:55795005-55795024 None:intergenic 35.0%
!! AATCCTCTGATTTTGTTTGG+TGG - chr4_3:55795006-55795025 None:intergenic 35.0%
! TTTGAAGTCAGTAACATTGC+AGG + chr4_3:55795052-55795071 Msa0649200:CDS 35.0%
! CTATGAAAGGACAAGTTGAA+GGG - chr4_3:55795135-55795154 None:intergenic 35.0%
! TCTATGAAAGGACAAGTTGA+AGG - chr4_3:55795136-55795155 None:intergenic 35.0%
TTGAACTGTGGATCTATGAA+AGG - chr4_3:55795148-55795167 None:intergenic 35.0%
! TGTTTCTGACAATTGAACTG+TGG - chr4_3:55795160-55795179 None:intergenic 35.0%
CAGTTCAATTGTCAGAAACA+TGG + chr4_3:55795160-55795179 Msa0649200:CDS 35.0%
AGCTTTACCAGAAATATAGG+TGG + chr4_3:55795194-55795213 Msa0649200:CDS 35.0%
CTTGGCATGTTACAAGAAAA+TGG - chr4_3:55795223-55795242 None:intergenic 35.0%
! CATTTTCTTGTAACATGCCA+AGG + chr4_3:55795221-55795240 Msa0649200:CDS 35.0%
GTTGTGATAAATTGTTTCGC+AGG + chr4_3:55795300-55795319 Msa0649200:intron 35.0%
AAATTGTTTCGCAGGTTCAA+TGG + chr4_3:55795308-55795327 Msa0649200:intron 35.0%
CAATGGTTTGAACTTTCTGA+AGG + chr4_3:55795325-55795344 Msa0649200:CDS 35.0%
! AACTTTCTGAAGGGTAATAG+AGG + chr4_3:55795335-55795354 Msa0649200:CDS 35.0%
! ACTTTCTGAAGGGTAATAGA+GGG + chr4_3:55795336-55795355 Msa0649200:CDS 35.0%
GGGAAGAAGATTATGTTTGT+TGG + chr4_3:55795356-55795375 Msa0649200:CDS 35.0%
TACAAGCTAACGAATTGAAC+TGG - chr4_3:55795400-55795419 None:intergenic 35.0%
!! CTGAATGTGCTTCTAGAATT+TGG - chr4_3:55795440-55795459 None:intergenic 35.0%
TATCTCTTCAGTCACATTTG+AGG + chr4_3:55795472-55795491 Msa0649200:CDS 35.0%
! CACAAAAGGCATAAAAGTGA+AGG - chr4_3:55795513-55795532 None:intergenic 35.0%
TTCGTGCTTCATTACACAAA+AGG - chr4_3:55795527-55795546 None:intergenic 35.0%
ATGAAAGTGAATCACGGTTA+CGG - chr4_3:55795692-55795711 None:intergenic 35.0%
TTTGAGTATTACAAGCCTTG+AGG + chr4_3:55795875-55795894 Msa0649200:intron 35.0%
CATTATGTGCATGTTTGAGT+TGG - chr4_3:55796074-55796093 None:intergenic 35.0%
ACTAACGAAGTTTGCATTCA+GGG + chr4_3:55796418-55796437 Msa0649200:intron 35.0%
GACTAACAAAGTCTACATTC+AGG + chr4_3:55796449-55796468 Msa0649200:intron 35.0%
AAAGAAACAATTCCACTCTG+GGG - chr4_3:55796552-55796571 None:intergenic 35.0%
GAAAGAAACAATTCCACTCT+GGG - chr4_3:55796553-55796572 None:intergenic 35.0%
!!! CTTGTCTAGTTCTTTTGCAT+AGG - chr4_3:55796634-55796653 None:intergenic 35.0%
CATGGGACCATGAAAAAAAA+AGG - chr4_3:55797036-55797055 None:intergenic 35.0%
!!! CTTTTTTTTTCATGGTCCCA+TGG + chr4_3:55797034-55797053 Msa0649200:intron 35.0%
TAATCAGATTTACTGGTAGG+TGG - chr4_3:55797118-55797137 None:intergenic 35.0%
TGGTCATAAGTGTATCAAAC+TGG + chr4_3:55797210-55797229 Msa0649200:intron 35.0%
GACCTTGATCATGATAAAGA+AGG + chr4_3:55797431-55797450 Msa0649200:CDS 35.0%
GTCCTTCTTTATCATGATCA+AGG - chr4_3:55797436-55797455 None:intergenic 35.0%
AATGTGAGAGAATGATCCTA+CGG - chr4_3:55797563-55797582 None:intergenic 35.0%
TGACAGATGGGATTATATTC+AGG + chr4_3:55797652-55797671 Msa0649200:intron 35.0%
!! CGTTTTGTTGCATTCTACAA+AGG + chr4_3:55797704-55797723 Msa0649200:CDS 35.0%
TCTACAAAGGACTACAAACT+TGG + chr4_3:55797717-55797736 Msa0649200:CDS 35.0%
CTACAAAGGACTACAAACTT+GGG + chr4_3:55797718-55797737 Msa0649200:CDS 35.0%
CAAACCAAAGTCTTCTTCTT+AGG + chr4_3:55797773-55797792 Msa0649200:CDS 35.0%
ATATGGTGTATGGTATTAGG+GGG + chr4_3:55797912-55797931 Msa0649200:intron 35.0%
!!! AGTGAGAAAGTGCCATATTT+TGG + chr4_3:55797968-55797987 Msa0649200:CDS 35.0%
ATAACACCACTATAACCTTC+AGG - chr4_3:55798118-55798137 None:intergenic 35.0%
! TGAAGGTTATAGTGGTGTTA+TGG + chr4_3:55798117-55798136 Msa0649200:CDS 35.0%
GATGTTTCGGTTCTTGTAAT+TGG + chr4_3:55798321-55798340 Msa0649200:three_prime_UTR 35.0%
TGTAATTGGGCAATAAAGGT+TGG + chr4_3:55798335-55798354 Msa0649200:three_prime_UTR 35.0%
ATGTAGAGAGAGAAAGAGGA+GGG - chr4_3:55794822-55794841 None:intergenic 40.0%
TGGGAACAAAACCCAAGAAA+TGG + chr4_3:55794934-55794953 Msa0649200:exon 40.0%
!! CAAGCACTGAAACCATTTCT+TGG - chr4_3:55794949-55794968 None:intergenic 40.0%
TTCCCACCAAACAAAATCAG+AGG + chr4_3:55795000-55795019 Msa0649200:CDS 40.0%
!! TAACTTGTTCCGTGGCAAAT+GGG + chr4_3:55795081-55795100 Msa0649200:CDS 40.0%
! CAAGTTGAAGGGTTATAGAG+AGG - chr4_3:55795124-55795143 None:intergenic 40.0%
ATGGCATCCACCTATATTTC+TGG - chr4_3:55795204-55795223 None:intergenic 40.0%
TAGAATTTGGTACAGCAGCA+TGG - chr4_3:55795427-55795446 None:intergenic 40.0%
! TCTTCAGTCACATTTGAGGT+TGG + chr4_3:55795476-55795495 Msa0649200:intron 40.0%
TCCTTGGATTATGTGTGTCT+CGG + chr4_3:55795550-55795569 Msa0649200:intron 40.0%
ACCATCATGTTCTAACCTCA+AGG - chr4_3:55795893-55795912 None:intergenic 40.0%
! GAATTGATGTGATTGGTTGG+AGG + chr4_3:55795952-55795971 Msa0649200:intron 40.0%
AGAAAATGTCCCCAACACAA+AGG - chr4_3:55795982-55796001 None:intergenic 40.0%
!! GATACTTAGACCCACTTTTG+TGG + chr4_3:55796038-55796057 Msa0649200:intron 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG + chr4_3:55796282-55796301 Msa0649200:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG + chr4_3:55796283-55796302 Msa0649200:intron 40.0%
TCAGGGACTAAAGTGACTAA+CGG + chr4_3:55796371-55796390 Msa0649200:intron 40.0%
ACTAACGGAGTCTACATTCA+GGG + chr4_3:55796386-55796405 Msa0649200:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG + chr4_3:55796417-55796436 Msa0649200:intron 40.0%
TGACAAATCCCTTCTGATTC+AGG + chr4_3:55796509-55796528 Msa0649200:intron 40.0%
GACAAATCCCTTCTGATTCA+GGG + chr4_3:55796510-55796529 Msa0649200:intron 40.0%
CTTTAGTCCCTGAATCAGAA+GGG - chr4_3:55796520-55796539 None:intergenic 40.0%
ACTTTAGTCCCTGAATCAGA+AGG - chr4_3:55796521-55796540 None:intergenic 40.0%
GGAAAGAAACAATTCCACTC+TGG - chr4_3:55796554-55796573 None:intergenic 40.0%
! ATTTGCTGAAACAGGACCAT+GGG - chr4_3:55797053-55797072 None:intergenic 40.0%
AAGCTTGACTCAATCAAGAG+TGG + chr4_3:55797464-55797483 Msa0649200:CDS 40.0%
! ATGTGTTGATCTTCAACACG+TGG + chr4_3:55797507-55797526 Msa0649200:CDS 40.0%
!! AAGAAGACTTTGGTTTGTGC+TGG - chr4_3:55797770-55797789 None:intergenic 40.0%
TCATGCATGACTTTGTTGGT+TGG - chr4_3:55797949-55797968 None:intergenic 40.0%
TCACTCATGCATGACTTTGT+TGG - chr4_3:55797953-55797972 None:intergenic 40.0%
!! TTTGGTTTGAAATACCCTGG+AGG + chr4_3:55797986-55798005 Msa0649200:CDS 40.0%
! TTGGTTTGAAATACCCTGGA+GGG + chr4_3:55797987-55798006 Msa0649200:CDS 40.0%
AGAAAAGATGCACATCCTGA+AGG + chr4_3:55798100-55798119 Msa0649200:CDS 40.0%
! AGAAGCTGATTCCAAGTATC+AGG - chr4_3:55798178-55798197 None:intergenic 40.0%
ATTGGGCAATAAAGGTTGGA+TGG + chr4_3:55798339-55798358 Msa0649200:three_prime_UTR 40.0%
GATGTAGAGAGAGAAAGAGG+AGG - chr4_3:55794823-55794842 None:intergenic 45.0%
!! GGAACATGTAACTTGTTCCG+TGG + chr4_3:55795073-55795092 Msa0649200:CDS 45.0%
!! GTAACTTGTTCCGTGGCAAA+TGG + chr4_3:55795080-55795099 Msa0649200:CDS 45.0%
AATGAAGCACGAACACTCCT+TGG + chr4_3:55795534-55795553 Msa0649200:intron 45.0%
ACCGAGACACACATAATCCA+AGG - chr4_3:55795554-55795573 None:intergenic 45.0%
! GATTATGTGTGTCTCGGTGT+CGG + chr4_3:55795556-55795575 Msa0649200:intron 45.0%
GCCTTGAGGTTAGAACATGA+TGG + chr4_3:55795889-55795908 Msa0649200:intron 45.0%
TTGGAGGCTTTCCTTTGTGT+TGG + chr4_3:55795968-55795987 Msa0649200:intron 45.0%
TGGAGGCTTTCCTTTGTGTT+GGG + chr4_3:55795969-55795988 Msa0649200:intron 45.0%
ATTGCAAAACAGTCCCTGCA+TGG + chr4_3:55796342-55796361 Msa0649200:intron 45.0%
TCCCTGCATGGTCAATTTCA+GGG + chr4_3:55796354-55796373 Msa0649200:intron 45.0%
TCCCTGAAATTGACCATGCA+GGG - chr4_3:55796358-55796377 None:intergenic 45.0%
GACTAACGGAGTCTACATTC+AGG + chr4_3:55796385-55796404 Msa0649200:intron 45.0%
AAGTGACTAATTCCCCAGAG+TGG + chr4_3:55796537-55796556 Msa0649200:intron 45.0%
! CATTTGCTGAAACAGGACCA+TGG - chr4_3:55797054-55797073 None:intergenic 45.0%
CAGATTTACTGGTAGGTGGT+AGG - chr4_3:55797114-55797133 None:intergenic 45.0%
TCTATACCGCACAGCATACT+TGG + chr4_3:55797406-55797425 Msa0649200:CDS 45.0%
CAATCAAGAGTGGTGAAGCT+TGG + chr4_3:55797474-55797493 Msa0649200:CDS 45.0%
TGATCTTCAACACGTGGCAT+TGG + chr4_3:55797513-55797532 Msa0649200:CDS 45.0%
AAGGACTACAAACTTGGGCT+AGG + chr4_3:55797723-55797742 Msa0649200:CDS 45.0%
! ACTACAAACTTGGGCTAGGT+GGG + chr4_3:55797727-55797746 Msa0649200:CDS 45.0%
ATGGTATTAGGGGGAGAGAT+TGG + chr4_3:55797921-55797940 Msa0649200:intron 45.0%
!! TGGTGAACAAGGTGTTGAGA+AGG + chr4_3:55798029-55798048 Msa0649200:CDS 45.0%
GCACATCCTGAAGGTTATAG+TGG + chr4_3:55798109-55798128 Msa0649200:CDS 45.0%
TTCCTGGACTTCCTGATACT+TGG + chr4_3:55798164-55798183 Msa0649200:CDS 45.0%
TTCCAAGTATCAGGAAGTCC+AGG - chr4_3:55798169-55798188 None:intergenic 45.0%
!! TAATGAATTAAAAAAATATT+AGG - chr4_3:55796952-55796971 None:intergenic 5.0%
!! TACAAGGGTCGGTGTCGTAT+CGG - chr4_3:55795595-55795614 None:intergenic 50.0%
TGAATCACGGTTACGGACAC+TGG - chr4_3:55795685-55795704 None:intergenic 50.0%
GGAGGCTTTCCTTTGTGTTG+GGG + chr4_3:55795970-55795989 Msa0649200:intron 50.0%
CTTTAGTCCCTGAATGGGAG+AGG + chr4_3:55796288-55796307 Msa0649200:intron 50.0%
GACGAATCCTCTCCCATTCA+GGG - chr4_3:55796298-55796317 None:intergenic 50.0%
TGACGAATCCTCTCCCATTC+AGG - chr4_3:55796299-55796318 None:intergenic 50.0%
GTCCCTGCATGGTCAATTTC+AGG + chr4_3:55796353-55796372 Msa0649200:intron 50.0%
GTCCCTGAAATTGACCATGC+AGG - chr4_3:55796359-55796378 None:intergenic 50.0%
ATACCGCACAGCATACTTGG+TGG + chr4_3:55797409-55797428 Msa0649200:CDS 50.0%
AAGAGTGGTGAAGCTTGGAG+AGG + chr4_3:55797479-55797498 Msa0649200:CDS 50.0%
TGGTGAAGCTTGGAGAGGAA+TGG + chr4_3:55797484-55797503 Msa0649200:CDS 50.0%
! TCTTCAACACGTGGCATTGG+TGG + chr4_3:55797516-55797535 Msa0649200:CDS 50.0%
! GACTACAAACTTGGGCTAGG+TGG + chr4_3:55797726-55797745 Msa0649200:CDS 50.0%
TTCACCACCATCCAAGCCAT+TGG - chr4_3:55798016-55798035 None:intergenic 50.0%
TGGCAACTGATTGTAGCCAC+TGG + chr4_3:55798137-55798156 Msa0649200:CDS 50.0%
CGTCGTAGACCCATTTGCCA+CGG - chr4_3:55795093-55795112 None:intergenic 55.0%
GGTCCACCAAGTATGCTGTG+CGG - chr4_3:55797415-55797434 None:intergenic 55.0%
CGGTTGTGAGCTTCCAGTGT+GGG - chr4_3:55797543-55797562 None:intergenic 55.0%
ACGGTTGTGAGCTTCCAGTG+TGG - chr4_3:55797544-55797563 None:intergenic 55.0%
CACTGGAAGCTCACAACCGT+AGG + chr4_3:55797544-55797563 Msa0649200:intron 55.0%
ATACCCTGGAGGGACACCAA+TGG + chr4_3:55797997-55798016 Msa0649200:CDS 55.0%
! AAGCCATTGGTGTCCCTCCA+GGG - chr4_3:55798003-55798022 None:intergenic 55.0%
! AGGGACACCAATGGCTTGGA+TGG + chr4_3:55798006-55798025 Msa0649200:CDS 55.0%
! GACACCAATGGCTTGGATGG+TGG + chr4_3:55798009-55798028 Msa0649200:CDS 55.0%
! GGCTTGGATGGTGGTGAACA+AGG + chr4_3:55798018-55798037 Msa0649200:CDS 55.0%
TGTAGCCACTGGTGTCTTCC+TGG + chr4_3:55798148-55798167 Msa0649200:CDS 55.0%
GAAGTCCAGGAAGACACCAG+TGG - chr4_3:55798156-55798175 None:intergenic 55.0%
!! TGGCATTGGTGGACCCACAC+TGG + chr4_3:55797527-55797546 Msa0649200:CDS 60.0%
! CAAGCCATTGGTGTCCCTCC+AGG - chr4_3:55798004-55798023 None:intergenic 60.0%
CTGGAGGGACACCAATGGCT+TGG + chr4_3:55798002-55798021 Msa0649200:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55794814 55798546 55794814 ID=Msa0649200;Name=Msa0649200
chr4_3 mRNA 55794814 55798546 55794814 ID=Msa0649200-mRNA-1;Parent=Msa0649200;Name=Msa0649200-mRNA-1;_AED=0.11;_eAED=0.11;_QI=139|1|1|1|1|1|5|327|361
chr4_3 exon 55794814 55795242 55794814 ID=Msa0649200-mRNA-1:exon:14385;Parent=Msa0649200-mRNA-1
chr4_3 exon 55795322 55795493 55795322 ID=Msa0649200-mRNA-1:exon:14386;Parent=Msa0649200-mRNA-1
chr4_3 exon 55797386 55797561 55797386 ID=Msa0649200-mRNA-1:exon:14387;Parent=Msa0649200-mRNA-1
chr4_3 exon 55797658 55797816 55797658 ID=Msa0649200-mRNA-1:exon:14388;Parent=Msa0649200-mRNA-1
chr4_3 exon 55797931 55798546 55797931 ID=Msa0649200-mRNA-1:exon:14389;Parent=Msa0649200-mRNA-1
chr4_3 five_prime_UTR 55794814 55794952 55794814 ID=Msa0649200-mRNA-1:five_prime_utr;Parent=Msa0649200-mRNA-1
chr4_3 CDS 55794953 55795242 55794953 ID=Msa0649200-mRNA-1:cds;Parent=Msa0649200-mRNA-1
chr4_3 CDS 55795322 55795493 55795322 ID=Msa0649200-mRNA-1:cds;Parent=Msa0649200-mRNA-1
chr4_3 CDS 55797386 55797561 55797386 ID=Msa0649200-mRNA-1:cds;Parent=Msa0649200-mRNA-1
chr4_3 CDS 55797658 55797816 55797658 ID=Msa0649200-mRNA-1:cds;Parent=Msa0649200-mRNA-1
chr4_3 CDS 55797931 55798219 55797931 ID=Msa0649200-mRNA-1:cds;Parent=Msa0649200-mRNA-1
chr4_3 three_prime_UTR 55798220 55798546 55798220 ID=Msa0649200-mRNA-1:three_prime_utr;Parent=Msa0649200-mRNA-1
Gene Sequence

>Msa0649200

ATGGTTTCAGTGCTTGTAAATGCTCTGCTTCTAACTCTGTTTCTGTTTTCCCACCAAACAAAATCAGAGGATTTTAACTCTTTCAGCAATGAGACCAACTTTGAAGTCAGTAACATTGCAGGAACATGTAACTTGTTCCGTGGCAAATGGGTCTACGACGCTTCATATCCTCTCTATAACCCTTCAACTTGTCCTTTCATAGATCCACAGTTCAATTGTCAGAAACATGGTCGCAAAGATAAGCTTTACCAGAAATATAGGTGGATGCCATTTTCTTGTAACATGCCAAGGTTCAATGGTTTGAACTTTCTGAAGGGTAATAGAGGGAAGAAGATTATGTTTGTTGGTGACTCTTTGAGCTTAAACCAGTTCAATTCGTTAGCTTGTATGATCCATGCTGCTGTACCAAATTCTAGAAGCACATTCAGACAAAGAGATGCTATCTCTTCAGTCACATTTGAGGAGTATGGGCTTGAGTTATTTCTATACCGCACAGCATACTTGGTGGACCTTGATCATGATAAAGAAGGACGAGTATTGAAGCTTGACTCAATCAAGAGTGGTGAAGCTTGGAGAGGAATGGATGTGTTGATCTTCAACACGTGGCATTGGTGGACCCACACTGGAAGCTCACAACCATGGGATTATATTCAGGAGAATAAAAAGTTGTATAAAGACATGAATCGTTTTGTTGCATTCTACAAAGGACTACAAACTTGGGCTAGGTGGGTTGAAATGAATGTTAATCCAGCACAAACCAAAGTCTTCTTCTTAGGAATTTCTCCTGTACATTACCAGGGGAGAGATTGGAACCAACCAACAAAGTCATGCATGAGTGAGAAAGTGCCATATTTTGGTTTGAAATACCCTGGAGGGACACCAATGGCTTGGATGGTGGTGAACAAGGTGTTGAGAAGGATGAGTAAGCCAGTTTATTTCTTAGATGTGACAACTCTTTCACAATACAGAAAAGATGCACATCCTGAAGGTTATAGTGGTGTTATGGCAACTGATTGTAGCCACTGGTGTCTTCCTGGACTTCCTGATACTTGGAATCAGCTTCTCTATGCAGCACTTTCTCATTGA
Protein sequence

>Msa0649200

MVSVLVNALLLTLFLFSHQTKSEDFNSFSNETNFEVSNIAGTCNLFRGKWVYDASYPLYNPSTCPFIDPQFNCQKHGRKDKLYQKYRWMPFSCNMPRFNGLNFLKGNRGKKIMFVGDSLSLNQFNSLACMIHAAVPNSRSTFRQRDAISSVTFEEYGLELFLYRTAYLVDLDHDKEGRVLKLDSIKSGEAWRGMDVLIFNTWHWWTHTGSSQPWDYIQENKKLYKDMNRFVAFYKGLQTWARWVEMNVNPAQTKVFFLGISPVHYQGRDWNQPTKSCMSEKVPYFGLKYPGGTPMAWMVVNKVLRRMSKPVYFLDVTTLSQYRKDAHPEGYSGVMATDCSHWCLPGLPDTWNQLLYAALSH*