AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0087550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087550 MtrunA17_Chr1g0204471 95.420 262 10 1 1 260 1 262 7.09e-177 487
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0087550 AT5G51680.1 30.294 340 148 9 4 260 10 343 6.02e-23 96.3

Find 58 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTCAATTCCTTTCATT+TGG 0.224391 1_2:-68524799 Msa0087550:CDS
AAGAAAGGAAGAAACATATT+AGG 0.233439 1_2:-68524826 Msa0087550:CDS
TTGCCTCAATTCCCTTTGTT+TGG 0.279099 1_2:-68524691 Msa0087550:CDS
TGAAAAGTTAAGTTCAAGTT+TGG 0.340393 1_2:-68524333 Msa0087550:CDS
ACCTTCAATTCCTTTCATTT+GGG 0.345813 1_2:-68524798 Msa0087550:CDS
TATCAAAACTAAATGATTCT+AGG 0.360427 1_2:+68524597 None:intergenic
ACCGGAAGGTCAAGTTTAAC+TGG 0.368754 1_2:-68524431 Msa0087550:CDS
ACCACGAGAAAGCAAGCTTT+TGG 0.370273 1_2:-68523864 Msa0087550:CDS
TGCCTCAATTCCCTTTGTTT+GGG 0.372035 1_2:-68524690 Msa0087550:CDS
CCTTTGTTTCCACCAAAGTC+TGG 0.375252 1_2:-68524383 Msa0087550:CDS
AAGCAACTCAAATGAACAAA+TGG 0.378323 1_2:-68524196 Msa0087550:CDS
TTCAAGTTTGGTGGAACTAA+AGG 0.388380 1_2:-68524321 Msa0087550:CDS
AACTGAGTTAAATGATTCAT+TGG 0.396407 1_2:+68524574 None:intergenic
AAACTAGGGAGGGGTATTCC+AGG 0.409764 1_2:+68524659 None:intergenic
TTCTAGGTCCAAGCTAGTTA+TGG 0.418005 1_2:+68524613 None:intergenic
AGAAAGGAAGAAACATATTA+GGG 0.423493 1_2:-68524825 Msa0087550:CDS
ATGGAACAAGTTACCTTTGG+TGG 0.430078 1_2:+68524170 None:intergenic
TCAAGTTTGGTGGAACTAAA+GGG 0.439502 1_2:-68524320 Msa0087550:CDS
ACCAGTTAAACTTGACCTTC+CGG 0.442504 1_2:+68524430 None:intergenic
CAGGCATTCCTATAAAAGAT+TGG 0.447195 1_2:-68524766 Msa0087550:CDS
AAAGTTAAGTTCAAGTTTGG+TGG 0.448826 1_2:-68524330 Msa0087550:CDS
CTCTCCAGCTTCGTCGGAGA+TGG 0.451790 1_2:-68524477 Msa0087550:CDS
CTTTCAAGAAAACCAGACTT+TGG 0.465296 1_2:+68524371 None:intergenic
TTCCCAAACAAAGGGAATTG+AGG 0.478406 1_2:+68524688 None:intergenic
CTTTAGACTAGTTTCAGCCT+AGG 0.480571 1_2:+68523780 None:intergenic
AGAGAGTTTGCAAGTAAAGA+AGG 0.480592 1_2:+68524551 None:intergenic
CTATCCATCTCCGACGAAGC+TGG 0.483008 1_2:+68524473 None:intergenic
TTTAGACTAGTTTCAGCCTA+GGG 0.498911 1_2:+68523781 None:intergenic
TCCCAAATGAAAGGAATTGA+AGG 0.504204 1_2:+68524797 None:intergenic
AGCAACTCAAATGAACAAAT+GGG 0.509084 1_2:-68524195 Msa0087550:CDS
TCATCAACATGTGAGAAACT+AGG 0.514045 1_2:+68524644 None:intergenic
TCAAGAAAACCAGACTTTGG+TGG 0.518874 1_2:+68524374 None:intergenic
ACAAGCAGCAGTATCATTGA+AGG 0.522761 1_2:-68523825 Msa0087550:CDS
TCCGACGAAGCTGGAGAGGA+TGG 0.522845 1_2:+68524482 None:intergenic
ATAATTAACTCTCCAAGTGT+TGG 0.527351 1_2:+68524248 None:intergenic
GAGGATGGAGTTTGCTGTAG+TGG 0.531543 1_2:+68524497 None:intergenic
TCCATCCTCTCCAGCTTCGT+CGG 0.537624 1_2:-68524483 Msa0087550:CDS
TTCATTTGGGAAACAAAACC+AGG 0.538522 1_2:-68524785 Msa0087550:CDS
TCAAGGAAGCAACCAACACT+TGG 0.542435 1_2:-68524260 Msa0087550:CDS
TTGCTTCCTTGACATATCAC+AGG 0.543111 1_2:+68524271 None:intergenic
CCAGACTTTGGTGGAAACAA+AGG 0.545773 1_2:+68524383 None:intergenic
TCCAAAAGCTTGCTTTCTCG+TGG 0.546204 1_2:+68523863 None:intergenic
CATCAACATGTGAGAAACTA+GGG 0.549198 1_2:+68524645 None:intergenic
AGTATAAGCAGCTATGAGAC+CGG 0.561394 1_2:-68524449 Msa0087550:CDS
ATTATACCTGTGATATGTCA+AGG 0.573360 1_2:-68524277 Msa0087550:CDS
GAGTGAAACCATAACTAGCT+TGG 0.574998 1_2:-68524621 Msa0087550:CDS
TGACAAAATGATGAGTCCAC+TGG 0.586915 1_2:+68524740 None:intergenic
TGAAGAGAAAGTACTACCCT+AGG 0.596271 1_2:-68523797 Msa0087550:CDS
CATCTCCGACGAAGCTGGAG+AGG 0.596381 1_2:+68524478 None:intergenic
TGGAGTTTGCTGTAGTGGCA+TGG 0.598354 1_2:+68524502 None:intergenic
CAAATGAAAGGAATTGAAGG+TGG 0.607064 1_2:+68524800 None:intergenic
GAACAAATGGGATCCACCAA+AGG 0.609336 1_2:-68524183 Msa0087550:intron
ACATGTGAGAAACTAGGGAG+GGG 0.616121 1_2:+68524650 None:intergenic
TATAAAAGATTGGAAGCCAG+TGG 0.619766 1_2:-68524756 Msa0087550:CDS
AACATGTGAGAAACTAGGGA+GGG 0.639709 1_2:+68524649 None:intergenic
CAAGCAGCAGTATCATTGAA+GGG 0.643098 1_2:-68523824 Msa0087550:CDS
TAAGCAGCTATGAGACCGGA+AGG 0.643457 1_2:-68524445 Msa0087550:CDS
CAACATGTGAGAAACTAGGG+AGG 0.699559 1_2:+68524648 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATCAAAACTAAATGATTCT+AGG + chr1_2:68524024-68524043 None:intergenic 20.0%
!! AACGTTTATTGACATAAAAA+TGG + chr1_2:68524470-68524489 None:intergenic 20.0%
!! ATTCAAATTAGCATCTAAAT+TGG - chr1_2:68524629-68524648 Msa0087550:CDS 20.0%
!!! AATTGGTTACTTTTTAAGTA+TGG - chr1_2:68524646-68524665 Msa0087550:CDS 20.0%
!! TATCAAAACTAAATGATTCT+AGG + chr1_2:68524024-68524043 None:intergenic 20.0%
!! AACGTTTATTGACATAAAAA+TGG + chr1_2:68524470-68524489 None:intergenic 20.0%
!! ATTCAAATTAGCATCTAAAT+TGG - chr1_2:68524629-68524648 Msa0087550:CDS 20.0%
!!! AATTGGTTACTTTTTAAGTA+TGG - chr1_2:68524646-68524665 Msa0087550:CDS 20.0%
! AAGAAAGGAAGAAACATATT+AGG - chr1_2:68523792-68523811 Msa0087550:CDS 25.0%
! AGAAAGGAAGAAACATATTA+GGG - chr1_2:68523793-68523812 Msa0087550:CDS 25.0%
!!! ATTTGTTTTAGTGGAGTTTT+TGG + chr1_2:68523908-68523927 None:intergenic 25.0%
! AACTGAGTTAAATGATTCAT+TGG + chr1_2:68524047-68524066 None:intergenic 25.0%
!! TGAAAAGTTAAGTTCAAGTT+TGG - chr1_2:68524285-68524304 Msa0087550:CDS 25.0%
! TATGTCAATAAACGTTTCTT+TGG - chr1_2:68524474-68524493 Msa0087550:CDS 25.0%
! CTAAAACGTTGAATTAAGAT+CGG - chr1_2:68524528-68524547 Msa0087550:CDS 25.0%
! ATAATCTCATCGAGAAAAAT+TGG + chr1_2:68524611-68524630 None:intergenic 25.0%
! AAGAAAGGAAGAAACATATT+AGG - chr1_2:68523792-68523811 Msa0087550:CDS 25.0%
! AGAAAGGAAGAAACATATTA+GGG - chr1_2:68523793-68523812 Msa0087550:CDS 25.0%
!!! ATTTGTTTTAGTGGAGTTTT+TGG + chr1_2:68523908-68523927 None:intergenic 25.0%
! AACTGAGTTAAATGATTCAT+TGG + chr1_2:68524047-68524066 None:intergenic 25.0%
!! TGAAAAGTTAAGTTCAAGTT+TGG - chr1_2:68524285-68524304 Msa0087550:CDS 25.0%
! TATGTCAATAAACGTTTCTT+TGG - chr1_2:68524474-68524493 Msa0087550:CDS 25.0%
! CTAAAACGTTGAATTAAGAT+CGG - chr1_2:68524528-68524547 Msa0087550:CDS 25.0%
! ATAATCTCATCGAGAAAAAT+TGG + chr1_2:68524611-68524630 None:intergenic 25.0%
ACCTTCAATTCCTTTCATTT+GGG - chr1_2:68523820-68523839 Msa0087550:CDS 30.0%
!!! ATTGAGGCAATTTGTTTTAG+TGG + chr1_2:68523917-68523936 None:intergenic 30.0%
!!! TTTAACTGGTTCTGCTTTTT+TGG - chr1_2:68524201-68524220 Msa0087550:CDS 30.0%
!!! AAAGTCTGGTTTTCTTGAAA+GGG - chr1_2:68524249-68524268 Msa0087550:CDS 30.0%
! AAAGTTAAGTTCAAGTTTGG+TGG - chr1_2:68524288-68524307 Msa0087550:CDS 30.0%
ATTATACCTGTGATATGTCA+AGG - chr1_2:68524341-68524360 Msa0087550:CDS 30.0%
ATAATTAACTCTCCAAGTGT+TGG + chr1_2:68524373-68524392 None:intergenic 30.0%
AAGCAACTCAAATGAACAAA+TGG - chr1_2:68524422-68524441 Msa0087550:CDS 30.0%
AGCAACTCAAATGAACAAAT+GGG - chr1_2:68524423-68524442 Msa0087550:CDS 30.0%
AAAATGGAACAAGTTACCTT+TGG + chr1_2:68524454-68524473 None:intergenic 30.0%
! GACTTTGTATTTGGAATACT+TGG + chr1_2:68524578-68524597 None:intergenic 30.0%
ACCTTCAATTCCTTTCATTT+GGG - chr1_2:68523820-68523839 Msa0087550:CDS 30.0%
!!! ATTGAGGCAATTTGTTTTAG+TGG + chr1_2:68523917-68523936 None:intergenic 30.0%
!!! TTTAACTGGTTCTGCTTTTT+TGG - chr1_2:68524201-68524220 Msa0087550:CDS 30.0%
!!! AAAGTCTGGTTTTCTTGAAA+GGG - chr1_2:68524249-68524268 Msa0087550:CDS 30.0%
! AAAGTTAAGTTCAAGTTTGG+TGG - chr1_2:68524288-68524307 Msa0087550:CDS 30.0%
ATTATACCTGTGATATGTCA+AGG - chr1_2:68524341-68524360 Msa0087550:CDS 30.0%
ATAATTAACTCTCCAAGTGT+TGG + chr1_2:68524373-68524392 None:intergenic 30.0%
AAGCAACTCAAATGAACAAA+TGG - chr1_2:68524422-68524441 Msa0087550:CDS 30.0%
AGCAACTCAAATGAACAAAT+GGG - chr1_2:68524423-68524442 Msa0087550:CDS 30.0%
AAAATGGAACAAGTTACCTT+TGG + chr1_2:68524454-68524473 None:intergenic 30.0%
! GACTTTGTATTTGGAATACT+TGG + chr1_2:68524578-68524597 None:intergenic 30.0%
CAAATGAAAGGAATTGAAGG+TGG + chr1_2:68523821-68523840 None:intergenic 35.0%
CACCTTCAATTCCTTTCATT+TGG - chr1_2:68523819-68523838 Msa0087550:CDS 35.0%
TCCCAAATGAAAGGAATTGA+AGG + chr1_2:68523824-68523843 None:intergenic 35.0%
!!! GGTTTTGTTTCCCAAATGAA+AGG + chr1_2:68523833-68523852 None:intergenic 35.0%
TTCATTTGGGAAACAAAACC+AGG - chr1_2:68523833-68523852 Msa0087550:CDS 35.0%
! CAATCTTTTATAGGAATGCC+TGG + chr1_2:68523854-68523873 None:intergenic 35.0%
CAGGCATTCCTATAAAAGAT+TGG - chr1_2:68523852-68523871 Msa0087550:CDS 35.0%
!! ACTGGCTTCCAATCTTTTAT+AGG + chr1_2:68523863-68523882 None:intergenic 35.0%
TATAAAAGATTGGAAGCCAG+TGG - chr1_2:68523862-68523881 Msa0087550:CDS 35.0%
! GGTTTTTCTTCCCAAACAAA+GGG + chr1_2:68523941-68523960 None:intergenic 35.0%
! AGGTTTTTCTTCCCAAACAA+AGG + chr1_2:68523942-68523961 None:intergenic 35.0%
TTTGTTTGGGAAGAAAAACC+TGG - chr1_2:68523941-68523960 Msa0087550:intron 35.0%
CATCAACATGTGAGAAACTA+GGG + chr1_2:68523976-68523995 None:intergenic 35.0%
TCATCAACATGTGAGAAACT+AGG + chr1_2:68523977-68523996 None:intergenic 35.0%
AGAGAGTTTGCAAGTAAAGA+AGG + chr1_2:68524070-68524089 None:intergenic 35.0%
CTTTCAAGAAAACCAGACTT+TGG + chr1_2:68524250-68524269 None:intergenic 35.0%
!!! CAAAGTCTGGTTTTCTTGAA+AGG - chr1_2:68524248-68524267 Msa0087550:CDS 35.0%
! GGTTTTCTTGAAAGGGATAT+TGG - chr1_2:68524256-68524275 Msa0087550:CDS 35.0%
! TTCAAGTTTGGTGGAACTAA+AGG - chr1_2:68524297-68524316 Msa0087550:CDS 35.0%
! TCAAGTTTGGTGGAACTAAA+GGG - chr1_2:68524298-68524317 Msa0087550:CDS 35.0%
TCGTAGTCTGACTTTGTATT+TGG + chr1_2:68524587-68524606 None:intergenic 35.0%
TGAAGCAGAAGAGTAAATGT+TGG + chr1_2:68524723-68524742 None:intergenic 35.0%
CAAATGAAAGGAATTGAAGG+TGG + chr1_2:68523821-68523840 None:intergenic 35.0%
CACCTTCAATTCCTTTCATT+TGG - chr1_2:68523819-68523838 Msa0087550:CDS 35.0%
TCCCAAATGAAAGGAATTGA+AGG + chr1_2:68523824-68523843 None:intergenic 35.0%
!!! GGTTTTGTTTCCCAAATGAA+AGG + chr1_2:68523833-68523852 None:intergenic 35.0%
TTCATTTGGGAAACAAAACC+AGG - chr1_2:68523833-68523852 Msa0087550:CDS 35.0%
! CAATCTTTTATAGGAATGCC+TGG + chr1_2:68523854-68523873 None:intergenic 35.0%
CAGGCATTCCTATAAAAGAT+TGG - chr1_2:68523852-68523871 Msa0087550:CDS 35.0%
!! ACTGGCTTCCAATCTTTTAT+AGG + chr1_2:68523863-68523882 None:intergenic 35.0%
TATAAAAGATTGGAAGCCAG+TGG - chr1_2:68523862-68523881 Msa0087550:CDS 35.0%
! GGTTTTTCTTCCCAAACAAA+GGG + chr1_2:68523941-68523960 None:intergenic 35.0%
! AGGTTTTTCTTCCCAAACAA+AGG + chr1_2:68523942-68523961 None:intergenic 35.0%
TTTGTTTGGGAAGAAAAACC+TGG - chr1_2:68523941-68523960 Msa0087550:intron 35.0%
CATCAACATGTGAGAAACTA+GGG + chr1_2:68523976-68523995 None:intergenic 35.0%
TCATCAACATGTGAGAAACT+AGG + chr1_2:68523977-68523996 None:intergenic 35.0%
AGAGAGTTTGCAAGTAAAGA+AGG + chr1_2:68524070-68524089 None:intergenic 35.0%
CTTTCAAGAAAACCAGACTT+TGG + chr1_2:68524250-68524269 None:intergenic 35.0%
!!! CAAAGTCTGGTTTTCTTGAA+AGG - chr1_2:68524248-68524267 Msa0087550:CDS 35.0%
! GGTTTTCTTGAAAGGGATAT+TGG - chr1_2:68524256-68524275 Msa0087550:CDS 35.0%
! TTCAAGTTTGGTGGAACTAA+AGG - chr1_2:68524297-68524316 Msa0087550:CDS 35.0%
! TCAAGTTTGGTGGAACTAAA+GGG - chr1_2:68524298-68524317 Msa0087550:CDS 35.0%
TCGTAGTCTGACTTTGTATT+TGG + chr1_2:68524587-68524606 None:intergenic 35.0%
TGAAGCAGAAGAGTAAATGT+TGG + chr1_2:68524723-68524742 None:intergenic 35.0%
TGACAAAATGATGAGTCCAC+TGG + chr1_2:68523881-68523900 None:intergenic 40.0%
TTGCCTCAATTCCCTTTGTT+TGG - chr1_2:68523927-68523946 Msa0087550:intron 40.0%
! TGCCTCAATTCCCTTTGTTT+GGG - chr1_2:68523928-68523947 Msa0087550:intron 40.0%
TTCCCAAACAAAGGGAATTG+AGG + chr1_2:68523933-68523952 None:intergenic 40.0%
AACATGTGAGAAACTAGGGA+GGG + chr1_2:68523972-68523991 None:intergenic 40.0%
GAGTGAAACCATAACTAGCT+TGG - chr1_2:68523997-68524016 Msa0087550:intron 40.0%
TTCTAGGTCCAAGCTAGTTA+TGG + chr1_2:68524008-68524027 None:intergenic 40.0%
AGTATAAGCAGCTATGAGAC+CGG - chr1_2:68524169-68524188 Msa0087550:intron 40.0%
ACCAGTTAAACTTGACCTTC+CGG + chr1_2:68524191-68524210 None:intergenic 40.0%
TCAAGAAAACCAGACTTTGG+TGG + chr1_2:68524247-68524266 None:intergenic 40.0%
TTGCTTCCTTGACATATCAC+AGG + chr1_2:68524350-68524369 None:intergenic 40.0%
ATGGAACAAGTTACCTTTGG+TGG + chr1_2:68524451-68524470 None:intergenic 40.0%
ACAAGCAGCAGTATCATTGA+AGG - chr1_2:68524793-68524812 Msa0087550:CDS 40.0%
CAAGCAGCAGTATCATTGAA+GGG - chr1_2:68524794-68524813 Msa0087550:CDS 40.0%
!! TGAAGAGAAAGTACTACCCT+AGG - chr1_2:68524821-68524840 Msa0087550:CDS 40.0%
TGACAAAATGATGAGTCCAC+TGG + chr1_2:68523881-68523900 None:intergenic 40.0%
TTGCCTCAATTCCCTTTGTT+TGG - chr1_2:68523927-68523946 Msa0087550:intron 40.0%
! TGCCTCAATTCCCTTTGTTT+GGG - chr1_2:68523928-68523947 Msa0087550:intron 40.0%
TTCCCAAACAAAGGGAATTG+AGG + chr1_2:68523933-68523952 None:intergenic 40.0%
AACATGTGAGAAACTAGGGA+GGG + chr1_2:68523972-68523991 None:intergenic 40.0%
GAGTGAAACCATAACTAGCT+TGG - chr1_2:68523997-68524016 Msa0087550:intron 40.0%
TTCTAGGTCCAAGCTAGTTA+TGG + chr1_2:68524008-68524027 None:intergenic 40.0%
AGTATAAGCAGCTATGAGAC+CGG - chr1_2:68524169-68524188 Msa0087550:intron 40.0%
ACCAGTTAAACTTGACCTTC+CGG + chr1_2:68524191-68524210 None:intergenic 40.0%
TCAAGAAAACCAGACTTTGG+TGG + chr1_2:68524247-68524266 None:intergenic 40.0%
TTGCTTCCTTGACATATCAC+AGG + chr1_2:68524350-68524369 None:intergenic 40.0%
ATGGAACAAGTTACCTTTGG+TGG + chr1_2:68524451-68524470 None:intergenic 40.0%
ACAAGCAGCAGTATCATTGA+AGG - chr1_2:68524793-68524812 Msa0087550:CDS 40.0%
CAAGCAGCAGTATCATTGAA+GGG - chr1_2:68524794-68524813 Msa0087550:CDS 40.0%
!! TGAAGAGAAAGTACTACCCT+AGG - chr1_2:68524821-68524840 Msa0087550:CDS 40.0%
ACATGTGAGAAACTAGGGAG+GGG + chr1_2:68523971-68523990 None:intergenic 45.0%
CAACATGTGAGAAACTAGGG+AGG + chr1_2:68523973-68523992 None:intergenic 45.0%
ACCGGAAGGTCAAGTTTAAC+TGG - chr1_2:68524187-68524206 Msa0087550:CDS 45.0%
CCAGACTTTGGTGGAAACAA+AGG + chr1_2:68524238-68524257 None:intergenic 45.0%
! CCTTTGTTTCCACCAAAGTC+TGG - chr1_2:68524235-68524254 Msa0087550:CDS 45.0%
TCAAGGAAGCAACCAACACT+TGG - chr1_2:68524358-68524377 Msa0087550:CDS 45.0%
GAACAAATGGGATCCACCAA+AGG - chr1_2:68524435-68524454 Msa0087550:CDS 45.0%
! ACCACGAGAAAGCAAGCTTT+TGG - chr1_2:68524754-68524773 Msa0087550:CDS 45.0%
! TCCAAAAGCTTGCTTTCTCG+TGG + chr1_2:68524758-68524777 None:intergenic 45.0%
ACATGTGAGAAACTAGGGAG+GGG + chr1_2:68523971-68523990 None:intergenic 45.0%
CAACATGTGAGAAACTAGGG+AGG + chr1_2:68523973-68523992 None:intergenic 45.0%
ACCGGAAGGTCAAGTTTAAC+TGG - chr1_2:68524187-68524206 Msa0087550:CDS 45.0%
CCAGACTTTGGTGGAAACAA+AGG + chr1_2:68524238-68524257 None:intergenic 45.0%
! CCTTTGTTTCCACCAAAGTC+TGG - chr1_2:68524235-68524254 Msa0087550:CDS 45.0%
TCAAGGAAGCAACCAACACT+TGG - chr1_2:68524358-68524377 Msa0087550:CDS 45.0%
GAACAAATGGGATCCACCAA+AGG - chr1_2:68524435-68524454 Msa0087550:CDS 45.0%
! ACCACGAGAAAGCAAGCTTT+TGG - chr1_2:68524754-68524773 Msa0087550:CDS 45.0%
! TCCAAAAGCTTGCTTTCTCG+TGG + chr1_2:68524758-68524777 None:intergenic 45.0%
!! AAACTAGGGAGGGGTATTCC+AGG + chr1_2:68523962-68523981 None:intergenic 50.0%
!! TGGAGTTTGCTGTAGTGGCA+TGG + chr1_2:68524119-68524138 None:intergenic 50.0%
!! GAGGATGGAGTTTGCTGTAG+TGG + chr1_2:68524124-68524143 None:intergenic 50.0%
TAAGCAGCTATGAGACCGGA+AGG - chr1_2:68524173-68524192 Msa0087550:intron 50.0%
!! AAACTAGGGAGGGGTATTCC+AGG + chr1_2:68523962-68523981 None:intergenic 50.0%
!! TGGAGTTTGCTGTAGTGGCA+TGG + chr1_2:68524119-68524138 None:intergenic 50.0%
!! GAGGATGGAGTTTGCTGTAG+TGG + chr1_2:68524124-68524143 None:intergenic 50.0%
TAAGCAGCTATGAGACCGGA+AGG - chr1_2:68524173-68524192 Msa0087550:intron 50.0%
TCCATCCTCTCCAGCTTCGT+CGG - chr1_2:68524135-68524154 Msa0087550:intron 55.0%
CTATCCATCTCCGACGAAGC+TGG + chr1_2:68524148-68524167 None:intergenic 55.0%
TCCATCCTCTCCAGCTTCGT+CGG - chr1_2:68524135-68524154 Msa0087550:intron 55.0%
CTATCCATCTCCGACGAAGC+TGG + chr1_2:68524148-68524167 None:intergenic 55.0%
TCCGACGAAGCTGGAGAGGA+TGG + chr1_2:68524139-68524158 None:intergenic 60.0%
CATCTCCGACGAAGCTGGAG+AGG + chr1_2:68524143-68524162 None:intergenic 60.0%
CTCTCCAGCTTCGTCGGAGA+TGG - chr1_2:68524141-68524160 Msa0087550:intron 60.0%
TCCGACGAAGCTGGAGAGGA+TGG + chr1_2:68524139-68524158 None:intergenic 60.0%
CATCTCCGACGAAGCTGGAG+AGG + chr1_2:68524143-68524162 None:intergenic 60.0%
CTCTCCAGCTTCGTCGGAGA+TGG - chr1_2:68524141-68524160 Msa0087550:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 68523782 68524858 68523782 ID=Msa0087550;Name=Msa0087550
chr1_2 mRNA 68523782 68524858 68523782 ID=Msa0087550-mRNA-1;Parent=Msa0087550;Name=Msa0087550-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|260
chr1_2 exon 68524184 68524858 68524184 ID=Msa0087550-mRNA-1:exon:23410;Parent=Msa0087550-mRNA-1
chr1_2 exon 68523782 68523889 68523782 ID=Msa0087550-mRNA-1:exon:23409;Parent=Msa0087550-mRNA-1
chr1_2 CDS 68524184 68524858 68524184 ID=Msa0087550-mRNA-1:cds;Parent=Msa0087550-mRNA-1
chr1_2 CDS 68523782 68523889 68523782 ID=Msa0087550-mRNA-1:cds;Parent=Msa0087550-mRNA-1
Gene Sequence

>Msa0087550

ATGAATGAAAAAGAAAGGAAGAAACATATTAGGGAACCACCTTCAATTCCTTTCATTTGGGAAACAAAACCAGGCATTCCTATAAAAGATTGGAAGCCAGTGGACTCATCATTTTGTCAATTACCAAAAACTCCACTAAAACAAATTGCCTCAATTCCCTTTGTTTGGGAAGAAAAACCTGGAATACCCCTCCCTAGTTTCTCACATGTTGATGAGAGTGAAACCATAACTAGCTTGGACCTAGAATCATTTAGTTTTGATACCAATGAATCATTTAACTCAGTTCCTTCTTTACTTGCAAACTCTCTTGTATCATCAACTAAACTCTCTACAGCCATGCCACTACAGCAAACTCCATCCTCTCCAGCTTCGTCGGAGATGGATAGTAGTATAAGCAGCTATGAGACCGGAAGGTCAAGTTTAACTGGTTCTGCTTTTTTGGAATGTCTATTTCCTTTGTTTCCACCAAAGTCTGGTTTTCTTGAAAGGGATATTGGTTACAATGAAAAGTTAAGTTCAAGTTTGGTGGAACTAAAGGGAAATGATTTTGAGAATGAAGATTATACCTGTGATATGTCAAGGAAGCAACCAACACTTGGAGAGTTAATTATGATGAGCAGAAGAAGAAGCTGCATAAGAAAAGCAACTCAAATGAACAAATGGGATCCACCAAAGAAAACCACGAGAAAGCAAGCTTTTGGATGCTTCTCAGTTGTAACAAGCAGCAGTATCATTGAAGGGCTGTTGAAGAGAAAGTACTACCCTAGGCTGAAACTAGTCTAA

Protein sequence

>Msa0087550

MNEKERKKHIREPPSIPFIWETKPGIPIKDWKPVDSSFCQLPKTPLKQIASIPFVWEEKPGIPLPSFSHVDESETITSLDLESFSFDTNESFNSVPSLLANSLVSSTKLSTAMPLQQTPSSPASSEMDSSISSYETGRSSLTGSAFLECLFPLFPPKSGFLERDIGYNEKLSSSLVELKGNDFENEDYTCDMSRKQPTLGELIMMSRRRSCIRKATQMNKWDPPKKTTRKQAFGCFSVVTSSSIIEGLLKRKYYPRLKLV*