Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000380 | sp|Q8RX71|BAG4_ARATH | 65.217 | 69 | 24 | 0 | 5 | 73 | 137 | 205 | 4.63e-20 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000380 | Msa0068680 | 0.801270 | 9.744136e-49 | -8.615850e-47 |
| Msa0000380 | Msa0170570 | 0.836912 | 7.085350e-57 | -8.615850e-47 |
| Msa0000380 | Msa0426900 | 0.802671 | 5.022785e-49 | -8.615850e-47 |
| Msa0000380 | Msa0477080 | 0.815471 | 9.090429e-52 | -8.615850e-47 |
| Msa0000380 | Msa0479970 | 0.803501 | 3.383395e-49 | -8.615850e-47 |
| Msa0000380 | Msa0564130 | 0.805306 | 1.422392e-49 | -8.615850e-47 |
| Msa0000380 | Msa0613090 | 0.809693 | 1.667615e-50 | -8.615850e-47 |
| Msa0000380 | Msa0740510 | 0.802661 | 5.045440e-49 | -8.615850e-47 |
| Msa0000380 | Msa0802010 | 0.800710 | 1.268593e-48 | -8.615850e-47 |
| Msa0000380 | Msa0820770 | 0.801899 | 7.243056e-49 | -8.615850e-47 |
| Msa0000380 | Msa0922450 | 0.837465 | 5.117020e-57 | -8.615850e-47 |
| Msa0000380 | Msa0933230 | 0.807379 | 5.203133e-50 | -8.615850e-47 |
| Msa0000380 | Msa0933310 | 0.821083 | 4.875700e-53 | -8.615850e-47 |
| Msa0000380 | Msa0971090 | 0.834937 | 2.244854e-56 | -8.615850e-47 |
| Msa0000380 | Msa1102790 | 0.804114 | 2.522856e-49 | -8.615850e-47 |
| Msa0000380 | Msa1206910 | 0.847871 | 8.788139e-60 | -8.615850e-47 |
| Msa0000380 | Msa1331320 | 0.800120 | 1.672795e-48 | -8.615850e-47 |
| Msa0000380 | Msa1374470 | 0.800663 | 1.296743e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000380 | MtrunA17_Chr7g0243051 | 91.549 | 71 | 6 | 0 | 3 | 73 | 132 | 202 | 8.93e-38 | 129 |
| Msa0000380 | MtrunA17_Chr4g0007601 | 60.563 | 71 | 28 | 0 | 3 | 73 | 116 | 186 | 1.23e-20 | 85.5 |
| Msa0000380 | MtrunA17_Chr4g0016051 | 94.286 | 35 | 2 | 0 | 144 | 178 | 1066 | 1100 | 1.35e-16 | 76.6 |
| Msa0000380 | MtrunA17_CPg0492461 | 94.286 | 35 | 2 | 0 | 144 | 178 | 1066 | 1100 | 1.35e-16 | 76.6 |
| Msa0000380 | MtrunA17_Chr1g0162751 | 62.500 | 48 | 17 | 1 | 71 | 117 | 78 | 125 | 8.10e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000380 | AT3G51780.1 | 65.217 | 69 | 24 | 0 | 5 | 73 | 137 | 205 | 4.71e-21 | 87.4 |
| Msa0000380 | ATCG00860.1 | 37.000 | 100 | 49 | 1 | 93 | 178 | 1437 | 1536 | 5.16e-13 | 67.0 |
| Msa0000380 | ATCG01280.1 | 37.000 | 100 | 49 | 1 | 93 | 178 | 1437 | 1536 | 5.16e-13 | 67.0 |
Find 66 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGGTGGACACAATGTTATT+TGG | 0.218175 | 1_1:-1490588 | Msa0000380:CDS |
| GATCTCAAAATAAGAAAATA+TGG | 0.234683 | 1_1:-1493012 | Msa0000380:five_prime_UTR |
| TGGTGGACACAATGTTATTT+GGG | 0.250228 | 1_1:-1490587 | Msa0000380:CDS |
| TCGAATGACTCCATATGATA+TGG | 0.267394 | 1_1:-1491368 | Msa0000380:CDS |
| CTCATTCTGATTCAAATTGC+AGG | 0.290883 | 1_1:-1489382 | Msa0000380:three_prime_UTR |
| GTTCAGTAGATCAAATTAAA+AGG | 0.312955 | 1_1:-1489631 | Msa0000380:exon |
| AATCCAAGCAAAAGACTCTT+AGG | 0.331299 | 1_1:+1490535 | None:intergenic |
| GCTGGAGCTGGATGGTATTA+AGG | 0.331947 | 1_1:-1492349 | Msa0000380:CDS |
| TCTTCCCAAACAGTATACTA+TGG | 0.363218 | 1_1:+1489758 | None:intergenic |
| ATGCTCCATAGTATACTGTT+TGG | 0.382079 | 1_1:-1489763 | Msa0000380:CDS |
| ATTAAAGAATGAAATCAAAA+TGG | 0.388020 | 1_1:+1489526 | None:intergenic |
| TTTCAAGCTGTTGCTGTAGT+AGG | 0.388247 | 1_1:-1492581 | Msa0000380:CDS |
| TGATAAAGAAAGGGAATTCA+TGG | 0.391197 | 1_1:-1489653 | Msa0000380:CDS |
| AGAAATCGGTGTGCTGCATT+AGG | 0.400898 | 1_1:+1489433 | None:intergenic |
| GCCTTGGATGTGGCTGTCAA+TGG | 0.409273 | 1_1:-1492432 | Msa0000380:CDS |
| GTTGCTTATGAGGAAATTGC+TGG | 0.415619 | 1_1:-1492367 | Msa0000380:CDS |
| TGCTCCATAGTATACTGTTT+GGG | 0.420968 | 1_1:-1489762 | Msa0000380:CDS |
| ACTTCAAATCATAAAGAAAT+CGG | 0.437226 | 1_1:+1489419 | None:intergenic |
| AAAATAAACAAAGCCAAAAC+AGG | 0.438918 | 1_1:+1489563 | None:intergenic |
| TGACTACAGAGTTGCTTATG+AGG | 0.441095 | 1_1:-1492377 | Msa0000380:CDS |
| ATTTCATTGCTGATAAAGAA+AGG | 0.445698 | 1_1:-1489663 | Msa0000380:CDS |
| GAAATTACTGTTCAAGATCC+AGG | 0.454111 | 1_1:+1489681 | None:intergenic |
| ATTTAAATTGTTTCTGCAAG+TGG | 0.457730 | 1_1:-1489319 | Msa0000380:three_prime_UTR |
| GCAGGTGTTGGCCTTGGATG+TGG | 0.469671 | 1_1:-1492442 | Msa0000380:intron |
| CAAGAACTGTAAGAATGATC+TGG | 0.474307 | 1_1:+1489245 | None:intergenic |
| AGCATATGCAGGTTGCCATC+AGG | 0.476906 | 1_1:+1489781 | None:intergenic |
| CGAATGACTCCATATGATAT+GGG | 0.478606 | 1_1:-1491367 | Msa0000380:CDS |
| TCTGCAAGTGGAGCCTAGGC+TGG | 0.491643 | 1_1:-1489307 | Msa0000380:three_prime_UTR |
| TATGAGGAAATTGCTGGAGC+TGG | 0.493825 | 1_1:-1492361 | Msa0000380:CDS |
| TTGGATGTGGCTGTCAATGG+AGG | 0.496098 | 1_1:-1492429 | Msa0000380:CDS |
| TTTCATTGCTGATAAAGAAA+GGG | 0.511017 | 1_1:-1489662 | Msa0000380:CDS |
| TGTTTCTGCAAGTGGAGCCT+AGG | 0.513444 | 1_1:-1489311 | Msa0000380:three_prime_UTR |
| AGGTGGACAAGCTTTGTGAC+AGG | 0.514120 | 1_1:-1492553 | Msa0000380:CDS |
| GAATCAGAATGAGTGTGAAA+AGG | 0.516413 | 1_1:+1489392 | None:intergenic |
| TTCTGATTCAAATTGCAGGT+TGG | 0.523285 | 1_1:-1489378 | Msa0000380:three_prime_UTR |
| TTGATGATAAAATAGAATCC+TGG | 0.527986 | 1_1:-1489699 | Msa0000380:CDS |
| AATATAAATGCTACCAGCCT+AGG | 0.534326 | 1_1:+1489294 | None:intergenic |
| GCCTGCTCCTTCTGTAGAGG+AGG | 0.535099 | 1_1:-1492943 | Msa0000380:intron |
| ACCTCCTCTACAGAAGGAGC+AGG | 0.535547 | 1_1:+1492942 | None:intergenic |
| AAGAATGATCTGGTTGGTAT+TGG | 0.537584 | 1_1:+1489255 | None:intergenic |
| GTATACTATGGAGCATATGC+AGG | 0.541768 | 1_1:+1489770 | None:intergenic |
| CTGGCCTGCTCCTTCTGTAG+AGG | 0.555619 | 1_1:-1492946 | Msa0000380:five_prime_UTR |
| AACAGCTAATGAAAAGACTC+TGG | 0.561222 | 1_1:-1492965 | Msa0000380:five_prime_UTR |
| GTAGCATTTATATTATGTCA+AGG | 0.562076 | 1_1:-1489285 | Msa0000380:three_prime_UTR |
| TAGCATTTATATTATGTCAA+GGG | 0.565431 | 1_1:-1489284 | Msa0000380:three_prime_UTR |
| CAAATAACATTGTGTCCACC+AGG | 0.577263 | 1_1:+1490589 | None:intergenic |
| TTGTGAATCTTGTGAGCAGA+GGG | 0.580456 | 1_1:+1490559 | None:intergenic |
| GGTGGACACAATGTTATTTG+GGG | 0.591154 | 1_1:-1490586 | Msa0000380:CDS |
| GATATTACCTCCTCTACAGA+AGG | 0.596493 | 1_1:+1492936 | None:intergenic |
| AACTGTAAGAATGATCTGGT+TGG | 0.596770 | 1_1:+1489249 | None:intergenic |
| TTAAGGCTGAAGGTGAAGCT+AGG | 0.598267 | 1_1:-1492332 | Msa0000380:CDS |
| CAATATGTAACACTTGCAAG+TGG | 0.598595 | 1_1:-1489485 | Msa0000380:three_prime_UTR |
| GGTGGACAAGCTTTGTGACA+GGG | 0.600958 | 1_1:-1492552 | Msa0000380:intron |
| TGGATGTGGCTGTCAATGGA+GGG | 0.601202 | 1_1:-1492428 | Msa0000380:CDS |
| CTGGATGGTATTAAGGCTGA+AGG | 0.605506 | 1_1:-1492342 | Msa0000380:CDS |
| AGGAAATTGCTGGAGCTGGA+TGG | 0.613422 | 1_1:-1492357 | Msa0000380:CDS |
| TGCTGTAGTAGGATCAGAGG+TGG | 0.625789 | 1_1:-1492570 | Msa0000380:CDS |
| AAATTCTTTGTCAGAAACCG+TGG | 0.626027 | 1_1:+1492404 | None:intergenic |
| GGCTGTCAATGGAGGGACCA+CGG | 0.626800 | 1_1:-1492421 | Msa0000380:CDS |
| TCCATTGACAGCCACATCCA+AGG | 0.628433 | 1_1:+1492431 | None:intergenic |
| TGTTGCTGTAGTAGGATCAG+AGG | 0.643755 | 1_1:-1492573 | Msa0000380:CDS |
| TAGGTTGCAGAGAAAAGCTG+AGG | 0.646000 | 1_1:-1492313 | Msa0000380:intron |
| ATTGTGAATCTTGTGAGCAG+AGG | 0.647355 | 1_1:+1490558 | None:intergenic |
| AATTAAAAGGAAGATGACAA+TGG | 0.667253 | 1_1:-1489618 | Msa0000380:three_prime_UTR |
| TTGTCAAAGAGAAAACCTGA+TGG | 0.669312 | 1_1:-1489796 | Msa0000380:CDS |
| ACAATTGATAGAGATAAACA+AGG | 0.713388 | 1_1:-1489355 | Msa0000380:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATGATAATGTTTTATTTA+GGG | - | chr1_1:1489740-1489759 | Msa0000380:CDS | 10.0% |
| !!! | CATAGTTTTTTTTAAAATAA+CGG | + | chr1_1:1492084-1492103 | None:intergenic | 10.0% |
| !!! | TTTAGTTGATAAAAAATTTA+TGG | - | chr1_1:1492294-1492313 | Msa0000380:intron | 10.0% |
| !!! | GTAATGATAATGTTTTATTT+AGG | - | chr1_1:1489739-1489758 | Msa0000380:CDS | 15.0% |
| !!! | CGTTATTTTAAAAAAAACTA+TGG | - | chr1_1:1492082-1492101 | Msa0000380:intron | 15.0% |
| !!! | TTTAAAAAAAACTATGGTTT+TGG | - | chr1_1:1492088-1492107 | Msa0000380:intron | 15.0% |
| !!! | TAAAATATCGTTCAAATTTT+CGG | + | chr1_1:1492270-1492289 | None:intergenic | 15.0% |
| !!! | ATTATATGTATCATGAATTT+TGG | + | chr1_1:1492413-1492432 | None:intergenic | 15.0% |
| !! | ATTAAAGAATGAAATCAAAA+TGG | + | chr1_1:1492845-1492864 | None:intergenic | 15.0% |
| !! | GATCTCAAAATAAGAAAATA+TGG | - | chr1_1:1489356-1489375 | Msa0000380:three_prime_UTR | 20.0% |
| !!! | ATATCAATAATCATCTGTTT+TGG | - | chr1_1:1489450-1489469 | Msa0000380:three_prime_UTR | 20.0% |
| !!! | TATCAATAATCATCTGTTTT+GGG | - | chr1_1:1489451-1489470 | Msa0000380:three_prime_UTR | 20.0% |
| !!! | AAAATCTTTTAACAAAACCA+TGG | + | chr1_1:1489770-1489789 | None:intergenic | 20.0% |
| !! | TAATAATAATATGGGAAACA+TGG | + | chr1_1:1489846-1489865 | None:intergenic | 20.0% |
| !!! | TTTAATACCATGATTTTGTT+TGG | + | chr1_1:1490176-1490195 | None:intergenic | 20.0% |
| !!! | TTTCGAACTTTTTAAGTTTT+TGG | - | chr1_1:1490209-1490228 | Msa0000380:intron | 20.0% |
| !!! | TTTTTAAGTTTTTGGAATCT+GGG | - | chr1_1:1490217-1490236 | Msa0000380:intron | 20.0% |
| !! | GGGTTGTTAAAAATTAAAAA+TGG | - | chr1_1:1490237-1490256 | Msa0000380:intron | 20.0% |
| !! | AAAAATTAAAAATGGAGTGT+TGG | - | chr1_1:1490245-1490264 | Msa0000380:intron | 20.0% |
| !! | TAACTACTACTCAAAATATA+TGG | - | chr1_1:1490388-1490407 | Msa0000380:intron | 20.0% |
| !! | ATACTTAAATGAAAATACGA+CGG | - | chr1_1:1491183-1491202 | Msa0000380:intron | 20.0% |
| !! | AATAGATAAACTAACCTAAT+AGG | + | chr1_1:1491635-1491654 | None:intergenic | 20.0% |
| !!! | TACATAGTTCTTTAAAAACA+TGG | + | chr1_1:1491993-1492012 | None:intergenic | 20.0% |
| !!! | ATTTTTATGTTATCAACCAA+AGG | + | chr1_1:1492342-1492361 | None:intergenic | 20.0% |
| !!! | GTTGATAACATAAAAATTGA+AGG | - | chr1_1:1492345-1492364 | Msa0000380:CDS | 20.0% |
| !!! | CTCATAAATTTTATGTATCA+TGG | + | chr1_1:1492436-1492455 | None:intergenic | 20.0% |
| !! | CATGATACATAAAATTTATG+AGG | - | chr1_1:1492434-1492453 | Msa0000380:CDS | 20.0% |
| !!! | ATTGTTGTATTTCTATATAG+TGG | - | chr1_1:1492475-1492494 | Msa0000380:intron | 20.0% |
| !! | ACTTCAAATCATAAAGAAAT+CGG | + | chr1_1:1492952-1492971 | None:intergenic | 20.0% |
| !! | TAGCATTTATATTATGTCAA+GGG | - | chr1_1:1493084-1493103 | Msa0000380:five_prime_UTR | 20.0% |
| ! | TTTCTTCTCATGTGTTTATT+TGG | + | chr1_1:1489597-1489616 | None:intergenic | 25.0% |
| !!! | CAAAATGATTTTCTGAAAGT+TGG | - | chr1_1:1489641-1489660 | Msa0000380:exon | 25.0% |
| !!! | ATTACTGATTGTAATTTTGC+AGG | - | chr1_1:1489908-1489927 | Msa0000380:intron | 25.0% |
| !!! | CTTTTTAAGTTTTTGGAATC+TGG | - | chr1_1:1490216-1490235 | Msa0000380:intron | 25.0% |
| !!! | GTTTTGAATTTCTTTGACTT+TGG | - | chr1_1:1490436-1490455 | Msa0000380:intron | 25.0% |
| ! | ACAACAAATCATTAACACAA+GGG | + | chr1_1:1490483-1490502 | None:intergenic | 25.0% |
| ! | TACAACAAATCATTAACACA+AGG | + | chr1_1:1490484-1490503 | None:intergenic | 25.0% |
| ! | TTGTTGTAATATGTTTCCAA+TGG | - | chr1_1:1490496-1490515 | Msa0000380:intron | 25.0% |
| !!! | AACGAAAATATTTTGACCAT+TGG | + | chr1_1:1490515-1490534 | None:intergenic | 25.0% |
| ! | AAGTAGGAAAACACATAAAT+AGG | + | chr1_1:1490656-1490675 | None:intergenic | 25.0% |
| ! | TACACTTGAAACTTAAAAGA+AGG | - | chr1_1:1490759-1490778 | Msa0000380:intron | 25.0% |
| !!! | TTCATTATCGTTGATTCTAA+CGG | - | chr1_1:1490854-1490873 | Msa0000380:intron | 25.0% |
| !! | ATTTATTGAATGCATTTTGC+AGG | - | chr1_1:1490970-1490989 | Msa0000380:intron | 25.0% |
| ! | ATAAGTCTAATTTCTGACTA+CGG | - | chr1_1:1491118-1491137 | Msa0000380:intron | 25.0% |
| !!! | GTTAAGTTTTTTACTGCTAT+GGG | - | chr1_1:1491320-1491339 | Msa0000380:intron | 25.0% |
| ! | GGTTAAACCTAAAATGATAA+TGG | - | chr1_1:1491386-1491405 | Msa0000380:intron | 25.0% |
| !!! | ACTTATGTCTCTAAAACTAT+AGG | - | chr1_1:1491548-1491567 | Msa0000380:intron | 25.0% |
| !!! | CTTATGTCTCTAAAACTATA+GGG | - | chr1_1:1491549-1491568 | Msa0000380:intron | 25.0% |
| !!! | TAAAACTATAGGGTTTGTTT+TGG | - | chr1_1:1491559-1491578 | Msa0000380:intron | 25.0% |
| !!! | TTTTTTTTAAGACAATCTCC+TGG | - | chr1_1:1491761-1491780 | Msa0000380:intron | 25.0% |
| !!! | CTTTAAAAACATGGCAATTT+TGG | + | chr1_1:1491984-1492003 | None:intergenic | 25.0% |
| ! | TTTAAAGAACTATGTATGCT+TGG | - | chr1_1:1491997-1492016 | Msa0000380:intron | 25.0% |
| !!! | AATAACGGTAATTTTAGTCT+TGG | + | chr1_1:1492069-1492088 | None:intergenic | 25.0% |
| !!! | AATGACTTTTTTTAGTGTAC+AGG | - | chr1_1:1492227-1492246 | Msa0000380:intron | 25.0% |
| !! | TTTATGGCAAGAATTCTTTT+TGG | - | chr1_1:1492310-1492329 | Msa0000380:intron | 25.0% |
| !! | TTATGGCAAGAATTCTTTTT+GGG | - | chr1_1:1492311-1492330 | Msa0000380:intron | 25.0% |
| ! | GAAAAAATGTGAATAGTGAT+TGG | - | chr1_1:1492645-1492664 | Msa0000380:intron | 25.0% |
| !! | TTGATGATAAAATAGAATCC+TGG | - | chr1_1:1492669-1492688 | Msa0000380:intron | 25.0% |
| ! | ATTTCATTGCTGATAAAGAA+AGG | - | chr1_1:1492705-1492724 | Msa0000380:intron | 25.0% |
| ! | TTTCATTGCTGATAAAGAAA+GGG | - | chr1_1:1492706-1492725 | Msa0000380:intron | 25.0% |
| ! | GTTCAGTAGATCAAATTAAA+AGG | - | chr1_1:1492737-1492756 | Msa0000380:intron | 25.0% |
| ! | AATTAAAAGGAAGATGACAA+TGG | - | chr1_1:1492750-1492769 | Msa0000380:intron | 25.0% |
| !! | ACAGTTAATTTTACCTGTTT+TGG | - | chr1_1:1492792-1492811 | Msa0000380:intron | 25.0% |
| ! | AAAATAAACAAAGCCAAAAC+AGG | + | chr1_1:1492808-1492827 | None:intergenic | 25.0% |
| ! | ACAATTGATAGAGATAAACA+AGG | - | chr1_1:1493013-1493032 | Msa0000380:five_prime_UTR | 25.0% |
| !!! | ATTTAAATTGTTTCTGCAAG+TGG | - | chr1_1:1493049-1493068 | Msa0000380:five_prime_UTR | 25.0% |
| ! | GTAGCATTTATATTATGTCA+AGG | - | chr1_1:1493083-1493102 | Msa0000380:five_prime_UTR | 25.0% |
| ! | AGCAAGTTATTAGCTTAAGA+AGG | + | chr1_1:1489678-1489697 | None:intergenic | 30.0% |
| AAAAGCTGAGGTAATGTTTA+TGG | - | chr1_1:1490067-1490086 | Msa0000380:intron | 30.0% | |
| !! | GATTTTGTTTGGCACATATA+TGG | + | chr1_1:1490165-1490184 | None:intergenic | 30.0% |
| ATATGTGCCAAACAAAATCA+TGG | - | chr1_1:1490166-1490185 | Msa0000380:intron | 30.0% | |
| !! | TTTGATGGTGTTGAAATTCA+TGG | - | chr1_1:1490330-1490349 | Msa0000380:intron | 30.0% |
| TCGCTGTAATTTATGAATTG+AGG | - | chr1_1:1490414-1490433 | Msa0000380:intron | 30.0% | |
| ! | TTTTGATAAGAAAGCGATTC+TGG | - | chr1_1:1490533-1490552 | Msa0000380:CDS | 30.0% |
| ! | CACAACTTATTGATGGTATT+TGG | - | chr1_1:1490831-1490850 | Msa0000380:intron | 30.0% |
| AATATGAAGAGCAGGAAATA+AGG | + | chr1_1:1491282-1491301 | None:intergenic | 30.0% | |
| GTAAAAAACTTAACCATCAC+AGG | + | chr1_1:1491314-1491333 | None:intergenic | 30.0% | |
| !!! | GGTTAAGTTTTTTACTGCTA+TGG | - | chr1_1:1491319-1491338 | Msa0000380:intron | 30.0% |
| CATACTAATTTCCCTAGATT+GGG | - | chr1_1:1491352-1491371 | Msa0000380:CDS | 30.0% | |
| TTTCATAATCACCCAATCTA+GGG | + | chr1_1:1491366-1491385 | None:intergenic | 30.0% | |
| !! | AACCTAAAATGATAATGGCA+AGG | - | chr1_1:1491391-1491410 | Msa0000380:intron | 30.0% |
| TTGAAGCAAATCAATGTATC+AGG | + | chr1_1:1491418-1491437 | None:intergenic | 30.0% | |
| AAGGACATGATGATATCTAT+TGG | - | chr1_1:1491454-1491473 | Msa0000380:intron | 30.0% | |
| GATAAACTAACCTAATAGGA+GGG | + | chr1_1:1491631-1491650 | None:intergenic | 30.0% | |
| AGATAAACTAACCTAATAGG+AGG | + | chr1_1:1491632-1491651 | None:intergenic | 30.0% | |
| !!! | AAAAAAACTATGGTTTTGGC+TGG | - | chr1_1:1492092-1492111 | Msa0000380:intron | 30.0% |
| TTCAAAAGTAACTGCATGTT+AGG | + | chr1_1:1492208-1492227 | None:intergenic | 30.0% | |
| AACTATATTAGACAACACTG+AGG | + | chr1_1:1492519-1492538 | None:intergenic | 30.0% | |
| TTATGTGTAAACTGTTTCAG+TGG | - | chr1_1:1492541-1492560 | Msa0000380:intron | 30.0% | |
| TGATAAAGAAAGGGAATTCA+TGG | - | chr1_1:1492715-1492734 | Msa0000380:intron | 30.0% | |
| CATTAGGACAAAAAAACTGT+GGG | + | chr1_1:1492922-1492941 | None:intergenic | 30.0% | |
| AACAGCTAATGAAAAGACTC+TGG | - | chr1_1:1489403-1489422 | Msa0000380:three_prime_UTR | 35.0% | |
| ! | GATTGTAATTTTGCAGGTGT+TGG | - | chr1_1:1489914-1489933 | Msa0000380:intron | 35.0% |
| AAATTCTTTGTCAGAAACCG+TGG | + | chr1_1:1489967-1489986 | None:intergenic | 35.0% | |
| !! | ATGCAAATTGCAGGTTTTGA+TGG | - | chr1_1:1490315-1490334 | Msa0000380:intron | 35.0% |
| ! | TGGTTACACAATCTCTGTTT+TGG | - | chr1_1:1490359-1490378 | Msa0000380:intron | 35.0% |
| CCAAAAACATGCAGAAAAGA+GGG | + | chr1_1:1490612-1490631 | None:intergenic | 35.0% | |
| ACCAAAAACATGCAGAAAAG+AGG | + | chr1_1:1490613-1490632 | None:intergenic | 35.0% | |
| GATAACTCATGTGCGATATT+TGG | - | chr1_1:1490678-1490697 | Msa0000380:intron | 35.0% | |
| TCACTTGCACAACTTATTGA+TGG | - | chr1_1:1490824-1490843 | Msa0000380:intron | 35.0% | |
| TCGAATGACTCCATATGATA+TGG | - | chr1_1:1491000-1491019 | Msa0000380:intron | 35.0% | |
| CGAATGACTCCATATGATAT+GGG | - | chr1_1:1491001-1491020 | Msa0000380:intron | 35.0% | |
| !!! | GTCATTGGAGGTTTTGAATA+TGG | - | chr1_1:1491081-1491100 | Msa0000380:intron | 35.0% |
| TTCCTGCTCTTCATATTGAT+TGG | - | chr1_1:1491285-1491304 | Msa0000380:intron | 35.0% | |
| GCATACTAATTTCCCTAGAT+TGG | - | chr1_1:1491351-1491370 | Msa0000380:intron | 35.0% | |
| CTTTCATAATCACCCAATCT+AGG | + | chr1_1:1491367-1491386 | None:intergenic | 35.0% | |
| CTAGATTGGGTGATTATGAA+AGG | - | chr1_1:1491365-1491384 | Msa0000380:CDS | 35.0% | |
| ! | GACCTTGCCATTATCATTTT+AGG | + | chr1_1:1491396-1491415 | None:intergenic | 35.0% |
| CAATCCTTATGTCGATCTTA+AGG | - | chr1_1:1491435-1491454 | Msa0000380:intron | 35.0% | |
| ATGTCCTTAAGATCGACATA+AGG | + | chr1_1:1491442-1491461 | None:intergenic | 35.0% | |
| !!! | TTTTTAAGACAATCTCCTGG+TGG | - | chr1_1:1491764-1491783 | Msa0000380:intron | 35.0% |
| ! | TGGTGGACACAATGTTATTT+GGG | - | chr1_1:1491781-1491800 | Msa0000380:intron | 35.0% |
| ! | AATCCTAAGAGTCTTTTGCT+TGG | - | chr1_1:1491830-1491849 | Msa0000380:intron | 35.0% |
| AATCCAAGCAAAAGACTCTT+AGG | + | chr1_1:1491836-1491855 | None:intergenic | 35.0% | |
| ! | AGTCTTTTGCTTGGATTTCT+TGG | - | chr1_1:1491839-1491858 | Msa0000380:intron | 35.0% |
| AGAACTATGTATGCTTGGAT+TGG | - | chr1_1:1492002-1492021 | Msa0000380:intron | 35.0% | |
| TGGAACGCGAGAAAATTAAT+TGG | + | chr1_1:1492049-1492068 | None:intergenic | 35.0% | |
| TAACTGCATGTTAGGAATCA+CGG | + | chr1_1:1492200-1492219 | None:intergenic | 35.0% | |
| !!! | CTTTTTTTAGTGTACAGGTG+CGG | - | chr1_1:1492232-1492251 | Msa0000380:intron | 35.0% |
| !!! | TTTTTTTAGTGTACAGGTGC+GGG | - | chr1_1:1492233-1492252 | Msa0000380:intron | 35.0% |
| !!! | TTCTTTTTGGGTAAAGCCTT+TGG | - | chr1_1:1492323-1492342 | Msa0000380:CDS | 35.0% |
| TTGTCAAAGAGAAAACCTGA+TGG | - | chr1_1:1492572-1492591 | Msa0000380:CDS | 35.0% | |
| ATGCTCCATAGTATACTGTT+TGG | - | chr1_1:1492605-1492624 | Msa0000380:exon | 35.0% | |
| TGCTCCATAGTATACTGTTT+GGG | - | chr1_1:1492606-1492625 | Msa0000380:exon | 35.0% | |
| TCTTCCCAAACAGTATACTA+TGG | + | chr1_1:1492613-1492632 | None:intergenic | 35.0% | |
| GAAATTACTGTTCAAGATCC+AGG | + | chr1_1:1492690-1492709 | None:intergenic | 35.0% | |
| CAATATGTAACACTTGCAAG+TGG | - | chr1_1:1492883-1492902 | Msa0000380:intron | 35.0% | |
| !!! | ACTTGCAAGTGGTTTTGTTT+TGG | - | chr1_1:1492894-1492913 | Msa0000380:intron | 35.0% |
| GCATTAGGACAAAAAAACTG+TGG | + | chr1_1:1492923-1492942 | None:intergenic | 35.0% | |
| GAATCAGAATGAGTGTGAAA+AGG | + | chr1_1:1492979-1492998 | None:intergenic | 35.0% | |
| CTCATTCTGATTCAAATTGC+AGG | - | chr1_1:1492986-1493005 | Msa0000380:five_prime_UTR | 35.0% | |
| TTCTGATTCAAATTGCAGGT+TGG | - | chr1_1:1492990-1493009 | Msa0000380:five_prime_UTR | 35.0% | |
| AATATAAATGCTACCAGCCT+AGG | + | chr1_1:1493077-1493096 | None:intergenic | 35.0% | |
| ! | AAGAATGATCTGGTTGGTAT+TGG | + | chr1_1:1493116-1493135 | None:intergenic | 35.0% |
| AACTGTAAGAATGATCTGGT+TGG | + | chr1_1:1493122-1493141 | None:intergenic | 35.0% | |
| CAAGAACTGTAAGAATGATC+TGG | + | chr1_1:1493126-1493145 | None:intergenic | 35.0% | |
| GATATTACCTCCTCTACAGA+AGG | + | chr1_1:1489435-1489454 | None:intergenic | 40.0% | |
| !!! | GTTTTATTTAGGGTGAGCCA+TGG | - | chr1_1:1489750-1489769 | Msa0000380:CDS | 40.0% |
| TTTCAAGCTGTTGCTGTAGT+AGG | - | chr1_1:1489787-1489806 | Msa0000380:CDS | 40.0% | |
| TGACTACAGAGTTGCTTATG+AGG | - | chr1_1:1489991-1490010 | Msa0000380:intron | 40.0% | |
| GTTGCTTATGAGGAAATTGC+TGG | - | chr1_1:1490001-1490020 | Msa0000380:intron | 40.0% | |
| !! | ATGGAGTGTTGGAATAGTGT+TGG | - | chr1_1:1490256-1490275 | Msa0000380:intron | 40.0% |
| CTCAATGTGATGCAAATTGC+AGG | - | chr1_1:1490306-1490325 | Msa0000380:intron | 40.0% | |
| GTTGAAATTCATGGAGCTCA+TGG | - | chr1_1:1490339-1490358 | Msa0000380:intron | 40.0% | |
| TAAGAAAGCGATTCTGGTGA+AGG | - | chr1_1:1490539-1490558 | Msa0000380:CDS | 40.0% | |
| ! | CCCTCTTTTCTGCATGTTTT+TGG | - | chr1_1:1490609-1490628 | Msa0000380:intron | 40.0% |
| ! | GCACATGAGTTATCTGAAGT+AGG | + | chr1_1:1490672-1490691 | None:intergenic | 40.0% |
| !! | TCATGTGCGATATTTGGTGT+GGG | - | chr1_1:1490684-1490703 | Msa0000380:intron | 40.0% |
| ! | GAGGCTTTTCCCATATCATA+TGG | + | chr1_1:1491013-1491032 | None:intergenic | 40.0% |
| ! | CCATTTTCAACACAGACAAG+AGG | + | chr1_1:1491032-1491051 | None:intergenic | 40.0% |
| CCTCTTGTCTGTGTTGAAAA+TGG | - | chr1_1:1491029-1491048 | Msa0000380:intron | 40.0% | |
| CTTGTCTGTGTTGAAAATGG+CGG | - | chr1_1:1491032-1491051 | Msa0000380:intron | 40.0% | |
| AATGAAAATACGACGGCTCA+TGG | - | chr1_1:1491190-1491209 | Msa0000380:intron | 40.0% | |
| CACCAATCAATATGAAGAGC+AGG | + | chr1_1:1491290-1491309 | None:intergenic | 40.0% | |
| ! | TATTGATTGGTGACCTGTGA+TGG | - | chr1_1:1491298-1491317 | Msa0000380:intron | 40.0% |
| !! | GGTGATTCATGTTTGTTGTC+TGG | - | chr1_1:1491580-1491599 | Msa0000380:intron | 40.0% |
| TAACTGAACTCCCTCCTATT+AGG | - | chr1_1:1491618-1491637 | Msa0000380:intron | 40.0% | |
| !! | CTCACAAGTTTGTTGTCACA+TGG | - | chr1_1:1491725-1491744 | Msa0000380:intron | 40.0% |
| !! | CAAGTTTGTTGTCACATGGT+TGG | - | chr1_1:1491729-1491748 | Msa0000380:intron | 40.0% |
| CAAATAACATTGTGTCCACC+AGG | + | chr1_1:1491782-1491801 | None:intergenic | 40.0% | |
| ! | CTGGTGGACACAATGTTATT+TGG | - | chr1_1:1491780-1491799 | Msa0000380:intron | 40.0% |
| ! | GGTGGACACAATGTTATTTG+GGG | - | chr1_1:1491782-1491801 | Msa0000380:intron | 40.0% |
| TTGTGAATCTTGTGAGCAGA+GGG | + | chr1_1:1491812-1491831 | None:intergenic | 40.0% | |
| ATTGTGAATCTTGTGAGCAG+AGG | + | chr1_1:1491813-1491832 | None:intergenic | 40.0% | |
| ! | ACTATGTATGCTTGGATTGG+CGG | - | chr1_1:1492005-1492024 | Msa0000380:intron | 40.0% |
| !!! | AAAACTATGGTTTTGGCTGG+CGG | - | chr1_1:1492095-1492114 | Msa0000380:intron | 40.0% |
| ! | GCAGTGAACCATTGTGATTT+TGG | - | chr1_1:1492129-1492148 | Msa0000380:intron | 40.0% |
| GTATACTATGGAGCATATGC+AGG | + | chr1_1:1492601-1492620 | None:intergenic | 40.0% | |
| TGTTGCTGTAGTAGGATCAG+AGG | - | chr1_1:1489795-1489814 | Msa0000380:CDS | 45.0% | |
| !!! | AATTTTGCAGGTGTTGGCCT+TGG | - | chr1_1:1489920-1489939 | Msa0000380:intron | 45.0% |
| TATGAGGAAATTGCTGGAGC+TGG | - | chr1_1:1490007-1490026 | Msa0000380:intron | 45.0% | |
| CTGGATGGTATTAAGGCTGA+AGG | - | chr1_1:1490026-1490045 | Msa0000380:intron | 45.0% | |
| TTAAGGCTGAAGGTGAAGCT+AGG | - | chr1_1:1490036-1490055 | Msa0000380:intron | 45.0% | |
| TAGGTTGCAGAGAAAAGCTG+AGG | - | chr1_1:1490055-1490074 | Msa0000380:intron | 45.0% | |
| !! | GAGTGTTGGAATAGTGTTGG+TGG | - | chr1_1:1490259-1490278 | Msa0000380:intron | 45.0% |
| ! | CTCATGTGCGATATTTGGTG+TGG | - | chr1_1:1490683-1490702 | Msa0000380:intron | 45.0% |
| AAAATGGCGGTCATGCTTGA+AGG | - | chr1_1:1491045-1491064 | Msa0000380:intron | 45.0% | |
| AAATGGCGGTCATGCTTGAA+GGG | - | chr1_1:1491046-1491065 | Msa0000380:intron | 45.0% | |
| ! | AGCCTTTTGATGAAGCTCTC+TGG | - | chr1_1:1491141-1491160 | Msa0000380:intron | 45.0% |
| CTCCAGAGAGCTTCATCAAA+AGG | + | chr1_1:1491146-1491165 | None:intergenic | 45.0% | |
| ! | ATGGCGGAAAATGTGTCTCA+CGG | - | chr1_1:1491209-1491228 | Msa0000380:intron | 45.0% |
| TTACCGTCAAATCGCAACCT+TGG | + | chr1_1:1491235-1491254 | None:intergenic | 45.0% | |
| !! | AGCGTTGGCCAAAATCACAA+TGG | + | chr1_1:1492140-1492159 | None:intergenic | 45.0% |
| ! | TTTTGGCCAACGCTACACTT+TGG | - | chr1_1:1492146-1492165 | Msa0000380:intron | 45.0% |
| TAAGCTCCAAAGTGTAGCGT+TGG | + | chr1_1:1492155-1492174 | None:intergenic | 45.0% | |
| AGGAATCACGGTGAGTTTCA+CGG | + | chr1_1:1492188-1492207 | None:intergenic | 45.0% | |
| AGAAATCGGTGTGCTGCATT+AGG | + | chr1_1:1492938-1492957 | None:intergenic | 45.0% | |
| !! | ATAATGAATAATAATAATAT+GGG | + | chr1_1:1489854-1489873 | None:intergenic | 5.0% |
| !! | TATAATGAATAATAATAATA+TGG | + | chr1_1:1489855-1489874 | None:intergenic | 5.0% |
| TGCTGTAGTAGGATCAGAGG+TGG | - | chr1_1:1489798-1489817 | Msa0000380:CDS | 50.0% | |
| ! | AGGTGGACAAGCTTTGTGAC+AGG | - | chr1_1:1489815-1489834 | Msa0000380:intron | 50.0% |
| ! | GGTGGACAAGCTTTGTGACA+GGG | - | chr1_1:1489816-1489835 | Msa0000380:intron | 50.0% |
| TCCATTGACAGCCACATCCA+AGG | + | chr1_1:1489940-1489959 | None:intergenic | 50.0% | |
| TTGGATGTGGCTGTCAATGG+AGG | - | chr1_1:1489939-1489958 | Msa0000380:intron | 50.0% | |
| TGGATGTGGCTGTCAATGGA+GGG | - | chr1_1:1489940-1489959 | Msa0000380:intron | 50.0% | |
| AGGAAATTGCTGGAGCTGGA+TGG | - | chr1_1:1490011-1490030 | Msa0000380:intron | 50.0% | |
| GCTGGAGCTGGATGGTATTA+AGG | - | chr1_1:1490019-1490038 | Msa0000380:intron | 50.0% | |
| ! | AGCGATTCTGGTGAAGGTGT+CGG | - | chr1_1:1490545-1490564 | Msa0000380:CDS | 50.0% |
| CATGCAGAAAAGAGGGACGA+TGG | + | chr1_1:1490605-1490624 | None:intergenic | 50.0% | |
| TTGGCAGGCAATGTCATTGG+AGG | - | chr1_1:1491069-1491088 | Msa0000380:intron | 50.0% | |
| GAAAATACGACGGCTCATGG+CGG | - | chr1_1:1491193-1491212 | Msa0000380:intron | 50.0% | |
| GAAAATGTGTCTCACGGCCA+AGG | - | chr1_1:1491215-1491234 | Msa0000380:intron | 50.0% | |
| AGCATATGCAGGTTGCCATC+AGG | + | chr1_1:1492590-1492609 | None:intergenic | 50.0% | |
| ! | TGTTTCTGCAAGTGGAGCCT+AGG | - | chr1_1:1493057-1493076 | Msa0000380:five_prime_UTR | 50.0% |
| ACCTCCTCTACAGAAGGAGC+AGG | + | chr1_1:1489429-1489448 | None:intergenic | 55.0% | |
| GCCTTGGATGTGGCTGTCAA+TGG | - | chr1_1:1489936-1489955 | Msa0000380:intron | 55.0% | |
| !! | GATTCTGGTGAAGGTGTCGG+CGG | - | chr1_1:1490548-1490567 | Msa0000380:CDS | 55.0% |
| ! | GTCGGCGGAGAGGAGTTTTA+CGG | - | chr1_1:1490563-1490582 | Msa0000380:CDS | 55.0% |
| ! | GTCATGCTTGAAGGGTTGGC+AGG | - | chr1_1:1491054-1491073 | Msa0000380:intron | 55.0% |
| ! | GGGTTGGCAGGCAATGTCAT+TGG | - | chr1_1:1491066-1491085 | Msa0000380:intron | 55.0% |
| CGGCCAAGGTTGCGATTTGA+CGG | - | chr1_1:1491229-1491248 | Msa0000380:intron | 55.0% | |
| !!! | ACTATGGTTTTGGCTGGCGG+TGG | - | chr1_1:1492098-1492117 | Msa0000380:intron | 55.0% |
| !!! | CTATGGTTTTGGCTGGCGGT+GGG | - | chr1_1:1492099-1492118 | Msa0000380:intron | 55.0% |
| CTGGCCTGCTCCTTCTGTAG+AGG | - | chr1_1:1489422-1489441 | Msa0000380:three_prime_UTR | 60.0% | |
| GCCTGCTCCTTCTGTAGAGG+AGG | - | chr1_1:1489425-1489444 | Msa0000380:three_prime_UTR | 60.0% | |
| !! | GCAGGTGTTGGCCTTGGATG+TGG | - | chr1_1:1489926-1489945 | Msa0000380:intron | 60.0% |
| GGCTGTCAATGGAGGGACCA+CGG | - | chr1_1:1489947-1489966 | Msa0000380:intron | 60.0% | |
| ! | GGCGGAGAGGAGTTTTACGG+TGG | - | chr1_1:1490566-1490585 | Msa0000380:CDS | 60.0% |
| GGCGGTCATGCTTGAAGGGT+TGG | - | chr1_1:1491050-1491069 | Msa0000380:intron | 60.0% | |
| TCTGCAAGTGGAGCCTAGGC+TGG | - | chr1_1:1493061-1493080 | Msa0000380:five_prime_UTR | 60.0% | |
| !! | TGGTGAAGGTGTCGGCGGAG+AGG | - | chr1_1:1490553-1490572 | Msa0000380:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 1489245 | 1493145 | 1489245 | ID=Msa0000380;Name=Msa0000380 |
| chr1_1 | mRNA | 1489245 | 1493145 | 1489245 | ID=Msa0000380-mRNA-1;Parent=Msa0000380;Name=Msa0000380-mRNA-1;_AED=0.14;_eAED=0.14;_QI=210|0.6|0.83|1|0.4|0.5|6|400|178 |
| chr1_1 | exon | 1489245 | 1489829 | 1489245 | ID=Msa0000380-mRNA-1:exon:219;Parent=Msa0000380-mRNA-1 |
| chr1_1 | exon | 1490530 | 1490618 | 1490530 | ID=Msa0000380-mRNA-1:exon:218;Parent=Msa0000380-mRNA-1 |
| chr1_1 | exon | 1491352 | 1491398 | 1491352 | ID=Msa0000380-mRNA-1:exon:217;Parent=Msa0000380-mRNA-1 |
| chr1_1 | exon | 1492314 | 1492460 | 1492314 | ID=Msa0000380-mRNA-1:exon:216;Parent=Msa0000380-mRNA-1 |
| chr1_1 | exon | 1492553 | 1492629 | 1492553 | ID=Msa0000380-mRNA-1:exon:215;Parent=Msa0000380-mRNA-1 |
| chr1_1 | exon | 1492944 | 1493145 | 1492944 | ID=Msa0000380-mRNA-1:exon:214;Parent=Msa0000380-mRNA-1 |
| chr1_1 | five_prime_UTR | 1492944 | 1493145 | 1492944 | ID=Msa0000380-mRNA-1:five_prime_utr;Parent=Msa0000380-mRNA-1 |
| chr1_1 | five_prime_UTR | 1492622 | 1492629 | 1492622 | ID=Msa0000380-mRNA-1:five_prime_utr;Parent=Msa0000380-mRNA-1 |
| chr1_1 | CDS | 1492553 | 1492621 | 1492553 | ID=Msa0000380-mRNA-1:cds;Parent=Msa0000380-mRNA-1 |
| chr1_1 | CDS | 1492314 | 1492460 | 1492314 | ID=Msa0000380-mRNA-1:cds;Parent=Msa0000380-mRNA-1 |
| chr1_1 | CDS | 1491352 | 1491398 | 1491352 | ID=Msa0000380-mRNA-1:cds;Parent=Msa0000380-mRNA-1 |
| chr1_1 | CDS | 1490530 | 1490618 | 1490530 | ID=Msa0000380-mRNA-1:cds;Parent=Msa0000380-mRNA-1 |
| chr1_1 | CDS | 1489645 | 1489829 | 1489645 | ID=Msa0000380-mRNA-1:cds;Parent=Msa0000380-mRNA-1 |
| chr1_1 | three_prime_UTR | 1489245 | 1489644 | 1489245 | ID=Msa0000380-mRNA-1:three_prime_utr;Parent=Msa0000380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
