AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0945260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945260 MtrunA17_Chr4g0046371 95.892 706 21 3 1 703 1 701 0.0 1397
Msa0945260 MtrunA17_Chr2g0282961 76.957 447 88 4 2 436 1 444 0.0 687
Msa0945260 MtrunA17_Chr2g0282961 39.423 208 98 11 468 652 408 610 1.55e-23 105
Msa0945260 MtrunA17_Chr4g0029671 48.066 543 248 12 42 556 53 589 2.19e-148 451
Msa0945260 MtrunA17_Chr2g0326281 41.679 655 331 15 42 661 55 693 2.29e-145 444
Msa0945260 MtrunA17_Chr8g0385791 46.963 428 198 5 18 434 41 450 2.20e-124 390
Msa0945260 MtrunA17_Chr2g0276781 48.101 395 179 6 22 405 2 381 4.26e-117 366
Msa0945260 MtrunA17_Chr4g0009751 44.725 436 205 11 43 466 19 430 3.81e-113 354
Msa0945260 MtrunA17_Chr5g0433301 47.769 381 167 6 33 397 12 376 1.17e-108 348
Msa0945260 MtrunA17_Chr2g0285461 48.942 378 160 8 43 404 23 383 2.54e-108 349
Msa0945260 MtrunA17_Chr8g0346711 48.907 366 163 9 43 400 29 378 1.29e-107 342
Msa0945260 MtrunA17_Chr4g0070181 48.485 363 165 6 27 380 7 356 6.65e-106 347
Msa0945260 MtrunA17_Chr3g0109391 47.989 373 162 6 41 397 22 378 8.16e-106 341
Msa0945260 MtrunA17_Chr2g0301251 48.901 364 166 5 25 380 5 356 1.30e-105 347
Msa0945260 MtrunA17_Chr8g0376771 47.480 377 166 8 43 404 23 382 2.42e-105 342
Msa0945260 MtrunA17_Chr7g0239061 42.453 424 207 9 32 443 3 401 9.20e-104 332
Msa0945260 MtrunA17_Chr1g0156321 47.297 370 161 7 43 397 43 393 2.46e-103 335
Msa0945260 MtrunA17_Chr8g0389081 48.034 356 147 6 43 380 32 367 2.98e-101 334
Msa0945260 MtrunA17_Chr2g0326761 41.316 380 165 9 43 379 11 375 9.91e-84 279
Msa0945260 MtrunA17_Chr1g0199681 40.157 381 179 10 38 379 87 457 8.07e-79 266
Msa0945260 MtrunA17_Chr1g0181211 33.456 544 271 18 41 508 23 551 2.14e-75 256
Msa0945260 MtrunA17_Chr4g0028971 39.791 382 174 8 43 379 12 382 1.56e-74 254
Msa0945260 MtrunA17_Chr7g0264171 37.340 391 184 12 39 379 27 406 1.13e-70 241
Msa0945260 MtrunA17_Chr7g0264161 40.064 312 173 6 52 360 1 301 1.81e-66 221
Msa0945260 MtrunA17_Chr8g0356211 41.887 265 141 4 159 421 2 255 1.12e-64 217
Msa0945260 MtrunA17_Chr3g0115271 35.980 403 204 9 36 399 12 399 1.70e-62 219
Msa0945260 MtrunA17_Chr5g0417281 35.652 345 190 8 43 379 11 331 1.37e-61 215
Msa0945260 MtrunA17_Chr5g0424931 33.693 371 190 11 43 379 19 367 4.59e-58 205
Msa0945260 MtrunA17_Chr2g0289221 33.626 342 191 9 29 360 6 321 8.13e-51 181
Msa0945260 MtrunA17_Chr1g0178011 30.347 346 213 8 43 379 12 338 5.40e-48 176
Msa0945260 MtrunA17_Chr5g0417211 32.831 332 182 9 43 361 12 315 8.34e-48 174
Msa0945260 MtrunA17_Chr5g0436761 32.378 349 200 11 43 379 12 336 5.66e-46 170
Msa0945260 MtrunA17_Chr2g0277461 31.549 355 204 10 38 379 8 336 4.75e-42 159
Msa0945260 MtrunA17_Chr5g0424801 29.201 363 218 12 43 389 12 351 7.88e-38 145
Msa0945260 MtrunA17_Chr5g0424741 29.333 375 227 12 43 385 12 380 7.94e-37 145
Msa0945260 MtrunA17_Chr5g0425261 29.268 369 210 13 43 389 12 351 3.20e-35 137
Msa0945260 MtrunA17_Chr5g0425661 33.628 226 124 5 31 247 25 233 7.42e-34 129
Msa0945260 MtrunA17_Chr2g0277531 30.976 297 164 11 43 324 20 290 5.46e-32 126
Msa0945260 MtrunA17_Chr5g0424791 29.487 156 90 5 90 245 14 149 2.08e-12 65.5
Msa0945260 MtrunA17_Chr7g0276471 40.217 92 54 1 149 240 116 206 2.60e-12 69.7
Msa0945260 MtrunA17_Chr8g0345771 40.206 97 56 2 149 245 170 264 4.38e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945260 AT2G33860.1 56.840 519 180 7 1 507 1 487 0.0 577
Msa0945260 AT5G60450.2 41.354 694 320 17 5 664 3 643 1.15e-146 446
Msa0945260 AT5G60450.1 42.378 656 291 17 43 664 65 667 3.40e-143 438
Msa0945260 AT2G33860.2 57.660 359 122 2 150 507 1 330 8.82e-141 420
Msa0945260 AT5G62000.2 43.363 452 228 5 3 440 21 458 3.90e-122 385
Msa0945260 AT5G62000.5 43.363 452 228 5 3 440 21 458 3.90e-122 385
Msa0945260 AT5G62000.3 43.363 452 228 5 3 440 21 458 3.90e-122 385
Msa0945260 AT5G62000.1 43.363 452 228 5 3 440 21 458 3.90e-122 385
Msa0945260 AT5G62000.4 43.363 452 228 5 3 440 21 458 5.49e-122 384
Msa0945260 AT1G59750.1 47.520 383 167 6 20 389 2 363 1.07e-112 355
Msa0945260 AT1G59750.3 47.520 383 167 6 20 389 2 363 1.07e-112 355
Msa0945260 AT1G59750.2 47.520 383 167 6 20 389 2 363 1.14e-112 355
Msa0945260 AT1G59750.4 47.520 383 167 6 20 389 2 363 1.27e-112 354
Msa0945260 AT2G46530.3 46.791 374 161 9 31 387 27 379 3.84e-106 336
Msa0945260 AT4G23980.1 46.875 352 165 5 37 380 6 343 4.87e-106 337
Msa0945260 AT2G46530.1 47.354 359 154 8 43 387 21 358 5.01e-106 335
Msa0945260 AT4G23980.2 46.875 352 165 5 37 380 6 343 5.14e-106 336
Msa0945260 AT1G19220.1 49.176 364 165 5 25 380 5 356 7.32e-106 347
Msa0945260 AT3G61830.1 45.026 382 178 7 43 410 25 388 5.97e-105 333
Msa0945260 AT5G37020.2 45.802 393 174 8 22 397 4 374 9.18e-105 337
Msa0945260 AT1G30330.3 48.276 377 164 6 43 404 25 385 2.58e-104 340
Msa0945260 AT1G30330.2 48.276 377 164 6 43 404 25 385 2.58e-104 340
Msa0945260 AT5G37020.1 47.059 374 164 7 41 397 18 374 3.36e-104 337
Msa0945260 AT1G30330.1 48.276 377 164 6 43 404 23 383 3.61e-104 339
Msa0945260 AT1G19850.2 49.008 353 146 8 43 379 43 377 4.65e-102 333
Msa0945260 AT1G19850.1 49.008 353 146 8 43 379 54 388 6.28e-102 333
Msa0945260 AT5G20730.2 48.305 354 163 5 35 380 16 357 1.16e-100 334
Msa0945260 AT5G20730.3 48.169 355 163 6 35 380 16 358 4.39e-99 330
Msa0945260 AT5G20730.1 48.169 355 163 6 35 380 16 358 4.64e-99 330
Msa0945260 AT3G61830.2 46.386 332 159 5 83 410 21 337 8.97e-93 299
Msa0945260 AT1G35540.1 42.234 367 169 8 29 379 13 352 2.74e-90 294
Msa0945260 AT1G35240.1 42.936 361 175 8 29 379 13 352 9.61e-90 292
Msa0945260 AT1G34170.1 41.192 369 187 7 43 402 25 372 4.45e-89 288
Msa0945260 AT1G34410.1 35.385 520 273 16 29 526 13 491 1.51e-88 290
Msa0945260 AT1G34390.1 42.659 361 174 9 29 379 13 350 1.82e-88 289
Msa0945260 AT1G34310.1 41.828 361 179 8 29 379 13 352 5.15e-86 283
Msa0945260 AT1G35520.1 42.373 354 173 8 36 379 20 352 1.47e-85 281
Msa0945260 AT2G46530.2 54.202 238 105 3 151 387 37 271 9.16e-83 271
Msa0945260 AT5G37020.3 53.414 249 114 2 151 397 31 279 1.92e-81 273
Msa0945260 AT2G28350.1 38.200 411 200 10 43 410 10 409 7.65e-81 271
Msa0945260 AT2G28350.2 38.200 411 200 10 43 410 10 409 8.96e-81 270
Msa0945260 AT4G30080.1 40.054 372 181 7 43 379 19 383 3.94e-78 263
Msa0945260 AT1G34170.2 38.211 369 172 7 43 402 25 346 8.93e-77 254
Msa0945260 AT1G34170.3 38.211 369 172 7 43 402 25 346 5.84e-76 254
Msa0945260 AT1G77850.2 33.251 403 213 8 44 412 20 400 2.25e-62 219
Msa0945260 AT1G77850.1 33.251 403 213 8 44 412 20 400 2.29e-62 219
Msa0945260 AT1G43950.1 43.421 228 105 6 29 250 13 222 7.85e-52 179
Msa0945260 AT2G46870.1 33.835 133 82 2 136 263 20 151 1.03e-13 73.2
Msa0945260 AT1G01030.2 40.217 92 54 1 149 240 54 144 4.53e-13 71.6
Msa0945260 AT1G01030.1 40.217 92 54 1 149 240 54 144 6.21e-13 71.2
Msa0945260 AT4G01500.1 39.130 92 53 1 149 240 34 122 7.89e-13 70.9
Msa0945260 AT3G25730.1 26.132 287 166 10 2 249 4 283 6.77e-12 67.8
Msa0945260 AT1G68840.2 34.127 126 78 3 128 249 163 287 7.51e-11 64.7
Msa0945260 AT1G68840.1 34.127 126 78 3 128 249 163 287 7.51e-11 64.7

Find 209 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTTGTATGCACTGTTTA+TGG 0.086360 6_3:-24005890 Msa0945260:three_prime_UTR
AAGCATTAACTATGTCTTTA+AGG 0.125975 6_3:+24009021 None:intergenic
CCTCTCACTGAATGGGCTTT+TGG 0.148653 6_3:+24011206 None:intergenic
CTTGACCTTGCAAGACCTTC+TGG 0.208058 6_3:+24007182 None:intergenic
ACAAGTCTCACCTCACTTTC+AGG 0.212334 6_3:+24010177 None:intergenic
CTTGACCTTGCAAGACCTTC+TGG 0.215232 6_3:+24006975 None:intergenic
TTCATCAAAGCTAGAGTTTC+CGG 0.216516 6_3:-24007347 Msa0945260:CDS
GGTGCTGTTGGTTCTGGTTC+TGG 0.228992 6_3:-24010799 Msa0945260:CDS
AAAGAAACAAAAGGAAAATT+TGG 0.230989 6_3:-24011153 Msa0945260:five_prime_UTR
ACAACAACACTTCCTTTCTT+TGG 0.242841 6_3:+24010721 None:intergenic
TTCTGGTTCTTCTGTTTGTT+TGG 0.296671 6_3:-24010782 Msa0945260:CDS
ATTCCTCTAACAGGTAGAAT+TGG 0.305603 6_3:-24007235 Msa0945260:intron
CTGCCTCAACGCCAACTAAT+AGG 0.307928 6_3:-24006682 Msa0945260:CDS
AGTGTTGGTGCTGTTGGTTC+TGG 0.317923 6_3:-24010805 Msa0945260:CDS
ACATTTAACTTAAGGCAAAT+TGG 0.319681 6_3:-24005940 Msa0945260:three_prime_UTR
GACCATCCATTTGTGGATCT+TGG 0.321293 6_3:+24006857 None:intergenic
CTTCTGTTTGTTTGGAGCTA+TGG 0.324256 6_3:-24010774 Msa0945260:CDS
TGAGCTGGCCCGCGGAAAAT+AGG 0.324659 6_3:+24006659 None:intergenic
AGATTCACAGGACTAATTAT+TGG 0.332947 6_3:-24008644 Msa0945260:CDS
GAATTGGGACATCAGACTTT+GGG 0.338470 6_3:-24007219 Msa0945260:CDS
GATGTTTCCTGCAATGGCTT+TGG 0.342344 6_3:-24007013 Msa0945260:CDS
GGCTACCAAGATTCAATTGC+TGG 0.343727 6_3:+24009042 None:intergenic
AATCCATGGTTGACGCTTGC+TGG 0.351834 6_3:+24006786 None:intergenic
ACTCAGTTGGAATGAGGTTC+AGG 0.363746 6_3:-24008778 Msa0945260:CDS
AACAAGAAGAAACTTGTATC+TGG 0.365188 6_3:-24009251 Msa0945260:CDS
TTTGATCCAGGCCATCTAAC+AGG 0.365768 6_3:+24008605 None:intergenic
TTAAGTTAAATGTCTAAATT+CGG 0.369293 6_3:+24005950 None:intergenic
ACCTCTGTAATTCAGATAAC+TGG 0.374442 6_3:+24007107 None:intergenic
TGGTACACATTCACGCGATT+TGG 0.374841 6_3:-24006618 Msa0945260:CDS
CAAGGCTCTTTAAGAATTTG+TGG 0.377814 6_3:+24008810 None:intergenic
CAAGATTCTCTTCACTATGA+TGG 0.382293 6_3:-24010902 Msa0945260:exon
TTAGATGGCCTGGATCAAAA+TGG 0.391526 6_3:-24008601 Msa0945260:CDS
TGGAAGCTTCAAGGCTCAAC+AGG 0.392327 6_3:-24007462 Msa0945260:CDS
AGAAGATGGCGAATTGAGAT+TGG 0.400560 6_3:-24009120 Msa0945260:CDS
GAAGATGAAACACCTTCTTC+TGG 0.400643 6_3:-24010853 Msa0945260:CDS
AAAAGTAGCTGCAGAGTGTT+TGG 0.401467 6_3:-24006554 Msa0945260:CDS
ACAGAAAAGGCTTGTCCATA+TGG 0.405325 6_3:+24006935 None:intergenic
GAATTTAGACATTTAACTTA+AGG 0.405601 6_3:-24005948 Msa0945260:three_prime_UTR
GTCAACGAGGCTTGTAGAAA+TGG 0.411503 6_3:-24006914 Msa0945260:CDS
GCTTGTAGAAATGGTCGCTT+TGG 0.413112 6_3:-24006905 Msa0945260:CDS
CGAAGATTGCTTTCCTCCCC+TGG 0.414436 6_3:-24009652 Msa0945260:intron
ATTCTTTCTTGTAATAACTT+AGG 0.416838 6_3:-24006011 Msa0945260:three_prime_UTR
AGGGAGGTCCAGGATTTATC+TGG 0.416845 6_3:+24006468 None:intergenic
TTCTTTGGCAAAGAGATCAT+AGG 0.418004 6_3:+24010736 None:intergenic
TTCCACCACCAATAGCTTGA+TGG 0.422972 6_3:-24007404 Msa0945260:CDS
TTCTGCATCTTTATTTGCAA+TGG 0.425772 6_3:+24006508 None:intergenic
TTTGGCCAGCAATTGAATCT+TGG 0.426004 6_3:-24009047 Msa0945260:CDS
TAGTGATTTCATAATAATGA+TGG 0.428563 6_3:+24010972 None:intergenic
ACTAGTTGCCATCAAGCTAT+TGG 0.429653 6_3:+24007396 None:intergenic
GTTTCCTGTTGAAGCGATCC+CGG 0.430395 6_3:+24007063 None:intergenic
GAGCTATGGCATGCTTGTGC+TGG 0.433793 6_3:-24010760 Msa0945260:CDS
TCTGCATCTTTATTTGCAAT+GGG 0.433846 6_3:+24006509 None:intergenic
GTGGATCCTGTTAGATGGCC+TGG 0.434675 6_3:-24008611 Msa0945260:CDS
CTTGTGAAGGAGGGAGGTCC+AGG 0.435662 6_3:+24006458 None:intergenic
CATAGAACGAACCTCTTTGA+AGG 0.445028 6_3:+24006729 None:intergenic
TTGAGGGAAGGGGTAATTGA+TGG 0.447627 6_3:-24009804 Msa0945260:CDS
CTTGCAAGACCTTCTGGAAT+CGG 0.448674 6_3:+24006981 None:intergenic
GCAGAGAGCGTGAAGAACTT+TGG 0.455795 6_3:+24011028 None:intergenic
AATTCTGATGTTTCCTGCAA+TGG 0.460396 6_3:-24007019 Msa0945260:CDS
AGATTCACCAAAGCCATTGC+AGG 0.460830 6_3:+24007006 None:intergenic
CAGAGAAGACCATCCATTTG+TGG 0.461406 6_3:+24006850 None:intergenic
GGTGTATTGTCAGGTGTTGT+TGG 0.462932 6_3:-24010202 Msa0945260:CDS
ACGGCCAGGAATGGAAGTTT+CGG 0.465467 6_3:-24009432 Msa0945260:CDS
AGAATTGGGACATCAGACTT+TGG 0.468381 6_3:-24007220 Msa0945260:CDS
GTCGTAAGCAAATGCCTTCG+TGG 0.468733 6_3:+24009293 None:intergenic
CTTGATTATTCTTACTCAGT+TGG 0.470525 6_3:-24008791 Msa0945260:CDS
AAACATCAGAATTCATTTGT+GGG 0.471506 6_3:+24007029 None:intergenic
CATGAAGACATGAACTCGTT+TGG 0.472406 6_3:-24006638 Msa0945260:CDS
TATGCCGAAACTTCCATTCC+TGG 0.474904 6_3:+24009428 None:intergenic
TATCCCGGGATCGCTTCAAC+AGG 0.477815 6_3:-24007067 Msa0945260:CDS
TCATCTTCAAGTACAAGTAT+AGG 0.478694 6_3:-24010829 Msa0945260:CDS
ATGATCTCTTTGCCAAAGAA+AGG 0.480251 6_3:-24010733 Msa0945260:CDS
TTCCTCTAACAGGTAGAATT+GGG 0.480587 6_3:-24007234 Msa0945260:intron
CTGATGTGGATCCTGTTAGA+TGG 0.481986 6_3:-24008616 Msa0945260:CDS
TTTCCTGTTGAAGCGATCCC+GGG 0.482214 6_3:+24007064 None:intergenic
AAGATTCTCTTCACTATGAT+GGG 0.485635 6_3:-24010901 Msa0945260:exon
AGTTTGAAGAGGACCAAGAC+TGG 0.486097 6_3:-24007376 Msa0945260:CDS
ACAAGCCTCGTTGACAGAAA+AGG 0.486107 6_3:+24006922 None:intergenic
AATTGAGACATACTGGGAAC+CGG 0.486594 6_3:+24007328 None:intergenic
GAAACATCAGAATTCATTTG+TGG 0.487206 6_3:+24007028 None:intergenic
AAAATGCTGCTAATGAAAGC+TGG 0.489196 6_3:-24011242 Msa0945260:five_prime_UTR
TTACTTCCCTCAAGGACACT+TGG 0.489214 6_3:-24010698 Msa0945260:CDS
GGCAAAGGACCTGCACGGCC+AGG 0.491321 6_3:-24009446 Msa0945260:CDS
GATATTGAGGTGCATCATAT+AGG 0.493772 6_3:+24005866 None:intergenic
ATACTTCCTAGCCAACCATA+TGG 0.494849 6_3:-24006950 Msa0945260:CDS
CGAAGGCATTTGCTTACGAC+TGG 0.494928 6_3:-24009290 Msa0945260:CDS
CTCATCATTTCAGGTAAGGT+GGG 0.495255 6_3:-24007491 Msa0945260:intron
GATCCCGGGATAGGTTGAAC+CGG 0.495352 6_3:+24007078 None:intergenic
TTATAATAACAAAATTAATC+CGG 0.498479 6_3:-24006765 Msa0945260:CDS
GTCACTTGCCAGATAAATCC+TGG 0.499622 6_3:-24006476 Msa0945260:CDS
TGTTGAAGCGATCCCGGGAT+AGG 0.500591 6_3:+24007069 None:intergenic
GGGATGACATGGAAGCTTCA+AGG 0.501986 6_3:-24007471 Msa0945260:CDS
TGATGAAGGCAATCCAGTCT+TGG 0.502883 6_3:+24007363 None:intergenic
ACAATTGACAGAGGAGAAGA+TGG 0.503689 6_3:-24009134 Msa0945260:intron
ATTTGCAATGGGAGCACCCT+CGG 0.505296 6_3:+24006520 None:intergenic
ACTTCCATTCCTGGCCGTGC+AGG 0.506870 6_3:+24009437 None:intergenic
TTGCTCCGAAGTGAATGCCT+TGG 0.507472 6_3:+24006413 None:intergenic
CCATGGGAGATTGAGCCCTC+AGG 0.508458 6_3:-24007433 Msa0945260:CDS
GAGAAAGAGAAAGAGAAAGA+AGG 0.509354 6_3:-24011094 Msa0945260:five_prime_UTR
CAACTGAGTAAGAATAATCA+AGG 0.509968 6_3:+24008792 None:intergenic
CCAAAAGCCCATTCAGTGAG+AGG 0.511282 6_3:-24011206 Msa0945260:five_prime_UTR
TGAAGGACGTTATCCTCCAC+CGG 0.511378 6_3:+24006746 None:intergenic
ATAGGTAGTGTTGGTGCTGT+TGG 0.511774 6_3:-24010811 Msa0945260:CDS
GAAGATGGCGAATTGAGATT+GGG 0.515498 6_3:-24009119 Msa0945260:CDS
ATTCTTACTCAGTTGGAATG+AGG 0.516705 6_3:-24008784 Msa0945260:CDS
TGCCATCAAGCTATTGGTGG+TGG 0.517515 6_3:+24007402 None:intergenic
GAACGATGAGGTGTATTGTC+AGG 0.518104 6_3:-24010211 Msa0945260:CDS
AGTGAAAGCAGTGAGTGAGT+GGG 0.520072 6_3:-24011125 Msa0945260:five_prime_UTR
TTCACAAGAGCTTGTGGCAA+AGG 0.520697 6_3:-24009461 Msa0945260:CDS
TATGCTTCTGAAATGAAAGA+TGG 0.522167 6_3:-24006710 Msa0945260:CDS
AGGACCTGCACGGCCAGGAA+TGG 0.523330 6_3:-24009441 Msa0945260:CDS
GAGTGAAAGCAGTGAGTGAG+TGG 0.524756 6_3:-24011126 Msa0945260:five_prime_UTR
CAGGGGAGGAAAGCAATCTT+CGG 0.526886 6_3:+24009653 None:intergenic
GCAAGTGCAACAAAAGTTGA+GGG 0.527829 6_3:-24009820 Msa0945260:CDS
TCTCATCATTTCAGGTAAGG+TGG 0.529211 6_3:-24007492 Msa0945260:intron
CATTTGTGGATCTTGGCACC+TGG 0.529771 6_3:+24006864 None:intergenic
ATAACTTAGGATCAATACTT+AGG 0.533361 6_3:-24005998 Msa0945260:three_prime_UTR
TGCTGGTACATCAACACTGA+TGG 0.534225 6_3:+24006803 None:intergenic
TATCCCGGTTCAACCTATCC+CGG 0.534428 6_3:-24007082 Msa0945260:CDS
GCTTGTCCATATGGTTGGCT+AGG 0.536411 6_3:+24006944 None:intergenic
GGCATTTGCTTACGACTGGA+TGG 0.537671 6_3:-24009286 Msa0945260:CDS
ATGCATGCTAAGACTGATGC+TGG 0.538290 6_3:-24006080 Msa0945260:three_prime_UTR
GAGATGCTGTTCTGTTCCTC+CGG 0.539610 6_3:-24009229 Msa0945260:intron
AATTGAGATTGGGAATCCGC+AGG 0.541630 6_3:-24009109 Msa0945260:CDS
GAGTTCATGTCTTCATGAGC+TGG 0.542082 6_3:+24006644 None:intergenic
GATGTTCCAAGTGTCCTTGA+GGG 0.542111 6_3:+24010692 None:intergenic
CGATTCCAGAAGGTCTTGCA+AGG 0.542383 6_3:-24006980 Msa0945260:CDS
AGCAAGTGCAACAAAAGTTG+AGG 0.542657 6_3:-24009821 Msa0945260:CDS
TTCAACATGTCTTGTGAAGG+AGG 0.544875 6_3:+24006448 None:intergenic
AGCGTGAAGAACTTTGGCAT+TGG 0.545139 6_3:+24011034 None:intergenic
GCTCAACAGGGTTTCACCAT+GGG 0.545772 6_3:-24007449 Msa0945260:CDS
GAATTACAGAGGTGCTATCC+CGG 0.550009 6_3:-24007097 Msa0945260:CDS
GCTTCTGATACTAGCACTCA+TGG 0.551937 6_3:-24009702 Msa0945260:CDS
AAAAGGCTTGTCCATATGGT+TGG 0.552881 6_3:+24006939 None:intergenic
CGGAAAATAGGCCTATTAGT+TGG 0.553897 6_3:+24006671 None:intergenic
ACAGAGAAGCGGTCAAGAGT+TGG 0.561254 6_3:-24006588 Msa0945260:CDS
CTCTTTAAGAATTTGTGGAT+AGG 0.561415 6_3:+24008815 None:intergenic
TGCAACAAAAGTTGAGGGAA+GGG 0.561765 6_3:-24009815 Msa0945260:CDS
TAAACGCAGGGCAGCCACGA+AGG 0.562505 6_3:-24009307 Msa0945260:intron
TCAATCCAAGGCATTCACTT+CGG 0.563879 6_3:-24006418 Msa0945260:CDS
CTTGAAGATGAACCAGAAGA+AGG 0.564461 6_3:+24010841 None:intergenic
ATCTGGCAAGTGACTGCAGA+GGG 0.565131 6_3:+24006485 None:intergenic
ATCCCGGTTCAACCTATCCC+GGG 0.568291 6_3:-24007081 Msa0945260:CDS
TTGAAGATGATTTCAATCCA+AGG 0.568841 6_3:-24006430 Msa0945260:CDS
TTTGCCACAAGCTCTTGTGA+AGG 0.570311 6_3:+24009463 None:intergenic
AGTACAAGTATAGGTAGTGT+TGG 0.571181 6_3:-24010820 Msa0945260:CDS
TCAGGTAAGGTGGGATGACA+TGG 0.571901 6_3:-24007482 Msa0945260:intron
CTGAAGATGCTGCAGAGCGA+AGG 0.573424 6_3:-24008742 Msa0945260:intron
CAGGTGCCAAGATCCACAAA+TGG 0.574271 6_3:-24006863 Msa0945260:CDS
ATCTTCAACATGTCTTGTGA+AGG 0.575530 6_3:+24006445 None:intergenic
GTTGTTGTTTACTTCCCTCA+AGG 0.575589 6_3:-24010706 Msa0945260:CDS
GGAAACTCTAGCTTTGATGA+AGG 0.575774 6_3:+24007349 None:intergenic
TAACAAAATTAATCCGGTGG+AGG 0.578416 6_3:-24006759 Msa0945260:CDS
AAGGCATTCACTTCGGAGCA+AGG 0.579813 6_3:-24006411 Msa0945260:CDS
GTAATTGATGGTGATGGTGA+TGG 0.584113 6_3:-24009792 Msa0945260:CDS
GACTGACATGCATGATATTG+AGG 0.585893 6_3:+24005853 None:intergenic
CCTGAGGGCTCAATCTCCCA+TGG 0.586174 6_3:+24007433 None:intergenic
TGGATTGTAGTGTATGCTAA+AGG 0.587455 6_3:+24008983 None:intergenic
GTGCAACAAAAGTTGAGGGA+AGG 0.588950 6_3:-24009816 Msa0945260:CDS
GCAACAAAAGTTGAGGGAAG+GGG 0.589038 6_3:-24009814 Msa0945260:CDS
GGAATCACTGCGGTTCCAGA+AGG 0.590895 6_3:-24007197 Msa0945260:CDS
GGCTCAACAGGGTTTCACCA+TGG 0.590908 6_3:-24007450 Msa0945260:CDS
GATGGTGATGGTGATGGTGA+AGG 0.594977 6_3:-24009786 Msa0945260:CDS
AGTTGCCATCAAGCTATTGG+TGG 0.596259 6_3:+24007399 None:intergenic
TAATAACAAAATTAATCCGG+TGG 0.596313 6_3:-24006762 Msa0945260:CDS
AATTATTGGAATTACTGATG+TGG 0.597448 6_3:-24008630 Msa0945260:CDS
TGAATCTTTCCGATTCCAGA+AGG 0.600033 6_3:-24006990 Msa0945260:CDS
CAATCTTCGGCTGCTCGACG+AGG 0.600698 6_3:+24009666 None:intergenic
TTAGCATACACTACAATCCA+AGG 0.602455 6_3:-24008980 Msa0945260:intron
CAAAAGCCCATTCAGTGAGA+GGG 0.603222 6_3:-24011205 Msa0945260:five_prime_UTR
AGATGTTCCAAGTGTCCTTG+AGG 0.604919 6_3:+24010691 None:intergenic
ACACGACAGAACACATGAGA+AGG 0.606315 6_3:+24010634 None:intergenic
GTATTTGTGCAGGCTGAGGA+AGG 0.606600 6_3:-24010234 Msa0945260:intron
TGATGGCAACTAGTTTGAAG+AGG 0.608820 6_3:-24007387 Msa0945260:CDS
TGCCAAGATCCACAAATGGA+TGG 0.610246 6_3:-24006859 Msa0945260:CDS
ATCCCGGGATAGGTTGAACC+GGG 0.611784 6_3:+24007079 None:intergenic
CGGTTCCAGAAGGTCTTGCA+AGG 0.612560 6_3:-24007187 Msa0945260:CDS
AGGCCTATTAGTTGGCGTTG+AGG 0.614103 6_3:+24006679 None:intergenic
AATTGGGACATCAGACTTTG+GGG 0.617990 6_3:-24007218 Msa0945260:CDS
AAGACCTTCACAAGAGCTTG+TGG 0.618685 6_3:-24009467 Msa0945260:CDS
ATTGAGATTGGGAATCCGCA+GGG 0.619618 6_3:-24009108 Msa0945260:CDS
ACATGTCTTGTGAAGGAGGG+AGG 0.622871 6_3:+24006452 None:intergenic
TCAACATGTCTTGTGAAGGA+GGG 0.630253 6_3:+24006449 None:intergenic
TGTCTTCATGAGCTGGCCCG+CGG 0.635316 6_3:+24006651 None:intergenic
TTGTGGATCTTGGCACCTGG+TGG 0.639384 6_3:+24006867 None:intergenic
GGAAGCTTCAAGGCTCAACA+GGG 0.640992 6_3:-24007461 Msa0945260:CDS
CTAAGACTGATGCTGGCTTG+AGG 0.646313 6_3:-24006073 Msa0945260:three_prime_UTR
TTGGTTGCACTACAGAGAAG+CGG 0.648720 6_3:-24006599 Msa0945260:CDS
TCTGTAATTCAGATAACTGG+TGG 0.650832 6_3:+24007110 None:intergenic
AAGTTTCGGCATATATACAG+AGG 0.654829 6_3:-24009418 Msa0945260:intron
GAAGGGGTAATTGATGGTGA+TGG 0.656136 6_3:-24009798 Msa0945260:CDS
AGAGTCTTGCAGAACATGTG+AGG 0.659565 6_3:+24009729 None:intergenic
GTTGTTGGTTCCTGAAAGTG+AGG 0.660598 6_3:-24010187 Msa0945260:intron
ATCAAAATGGAAATGCCTAG+TGG 0.661824 6_3:-24008588 Msa0945260:intron
GTACCAGCAAGCGTCAACCA+TGG 0.662349 6_3:-24006789 Msa0945260:CDS
TGATGGTGATGGTGAAGGAG+AGG 0.663407 6_3:-24009781 Msa0945260:CDS
GATTGATCTCAACACTACTG+AGG 0.665345 6_3:-24010875 Msa0945260:CDS
GAGGATAACGTCCTTCAAAG+AGG 0.666492 6_3:-24006740 Msa0945260:CDS
CTCAAGGTAAGTACCAGGGG+AGG 0.666901 6_3:+24009639 None:intergenic
GGTGGTGGAAGATGAGCCTG+AGG 0.683472 6_3:+24007417 None:intergenic
TATTTGTGCAGGCTGAGGAA+GGG 0.684256 6_3:-24010233 Msa0945260:intron
TATCTGGCAAGTGACTGCAG+AGG 0.699849 6_3:+24006484 None:intergenic
ACCAGTTATCTGAATTACAG+AGG 0.702085 6_3:-24007108 Msa0945260:CDS
CTTGTGGCAAAGGACCTGCA+CGG 0.708055 6_3:-24009451 Msa0945260:CDS
GGCTGAGGAAGGGAACGATG+AGG 0.721717 6_3:-24010223 Msa0945260:CDS
CAGACTTTGGGGAATCACTG+CGG 0.730858 6_3:-24007207 Msa0945260:CDS
TCTGATACTAGCACTCATGG+TGG 0.734262 6_3:-24009699 Msa0945260:CDS
GTGGTGGAAGATGAGCCTGA+GGG 0.740646 6_3:+24007418 None:intergenic
GCATTCACTTCGGAGCAAGG+CGG 0.745305 6_3:-24006408 Msa0945260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTCAATTTATTTATTTTTT+TGG - chr6_3:24009801-24009820 Msa0945260:CDS 10.0%
!! TTATAATAACAAAATTAATC+CGG - chr6_3:24010349-24010368 Msa0945260:intron 10.0%
!!! AATTAGTTACAATAAATTTT+TGG + chr6_3:24011143-24011162 None:intergenic 10.0%
!! TTTATTGAAAATAGAATATC+AGG + chr6_3:24008745-24008764 None:intergenic 15.0%
!! TCTACTAATTAATCTATAAA+AGG - chr6_3:24009464-24009483 Msa0945260:CDS 15.0%
!!! AATTTTGTTATTATAATCCA+TGG + chr6_3:24010345-24010364 None:intergenic 15.0%
!!! TTGACTAATTCTTTTTATTT+GGG - chr6_3:24010948-24010967 Msa0945260:five_prime_UTR 15.0%
!! TTAAGTTAAATGTCTAAATT+CGG + chr6_3:24011167-24011186 None:intergenic 15.0%
!!! TTTCCTTTTGTTTCTTTTTT+GGG + chr6_3:24005958-24005977 None:intergenic 20.0%
!!! TTTTCCTTTTGTTTCTTTTT+TGG + chr6_3:24005959-24005978 None:intergenic 20.0%
!! AAAGAAACAAAAGGAAAATT+TGG - chr6_3:24005961-24005980 Msa0945260:three_prime_UTR 20.0%
!! TAGTGATTTCATAATAATGA+TGG + chr6_3:24006145-24006164 None:intergenic 20.0%
!! ATATTATCCGAAAAAGATAA+CGG + chr6_3:24006459-24006478 None:intergenic 20.0%
!!! ACTTTTTTCCTTCTAAAATT+TGG - chr6_3:24006624-24006643 Msa0945260:CDS 20.0%
!!! AAAAGAAACCAAATTTTAGA+AGG + chr6_3:24006635-24006654 None:intergenic 20.0%
!!! TCTAAAATTTGGTTTCTTTT+TGG - chr6_3:24006635-24006654 Msa0945260:CDS 20.0%
!!! CTAAAATTTGGTTTCTTTTT+GGG - chr6_3:24006636-24006655 Msa0945260:CDS 20.0%
!! TTCATTATAATCATCTCAAA+TGG + chr6_3:24007086-24007105 None:intergenic 20.0%
!! AAACTTTCAAAATTGAACAA+GGG + chr6_3:24007523-24007542 None:intergenic 20.0%
!! AAAACTTTCAAAATTGAACA+AGG + chr6_3:24007524-24007543 None:intergenic 20.0%
!!! ACTTGTTTCTCATTTTTATA+AGG - chr6_3:24007725-24007744 Msa0945260:intron 20.0%
!!! TAAATGTTTTGATAGAATGT+AGG + chr6_3:24007919-24007938 None:intergenic 20.0%
!! GATTAAGATTCTCTTAAATA+AGG + chr6_3:24008432-24008451 None:intergenic 20.0%
!! ATCATTTATATGCTTGAAAT+TGG - chr6_3:24008588-24008607 Msa0945260:intron 20.0%
!! TCATTTATATGCTTGAAATT+GGG - chr6_3:24008589-24008608 Msa0945260:CDS 20.0%
!!! ATTTTTTTTTGTCAATGTTG+TGG - chr6_3:24008680-24008699 Msa0945260:intron 20.0%
!!! TTTCAATAAAATTTTGCAGA+CGG - chr6_3:24008755-24008774 Msa0945260:CDS 20.0%
!! AAATAATTCCATTATTGAAC+TGG - chr6_3:24008957-24008976 Msa0945260:intron 20.0%
!!! AAACTTACCTTATTTACTAT+TGG + chr6_3:24009195-24009214 None:intergenic 20.0%
!! ACTTAACATAGGAAAAAATT+TGG - chr6_3:24009311-24009330 Msa0945260:intron 20.0%
!! AAACAATATGAAGTGAAATA+TGG + chr6_3:24009352-24009371 None:intergenic 20.0%
!! TAAATAAATTGAGACATACT+GGG + chr6_3:24009795-24009814 None:intergenic 20.0%
!! ATAAATAAATTGAGACATAC+TGG + chr6_3:24009796-24009815 None:intergenic 20.0%
!!! GTTGACTAATTCTTTTTATT+TGG - chr6_3:24010947-24010966 Msa0945260:five_prime_UTR 20.0%
!!! TGACTAATTCTTTTTATTTG+GGG - chr6_3:24010949-24010968 Msa0945260:five_prime_UTR 20.0%
!! ATTCTTTCTTGTAATAACTT+AGG - chr6_3:24011103-24011122 Msa0945260:five_prime_UTR 20.0%
!!! GAATTTAGACATTTAACTTA+AGG - chr6_3:24011166-24011185 Msa0945260:five_prime_UTR 20.0%
!! TGATTTTCCGTTATCTTTTT+CGG - chr6_3:24006449-24006468 Msa0945260:CDS 25.0%
!! AATCGAATGTTGTCTTTTAT+TGG - chr6_3:24006557-24006576 Msa0945260:CDS 25.0%
!!! TTTTTGAGTGAAACTTGTTA+TGG - chr6_3:24006816-24006835 Msa0945260:CDS 25.0%
!!! AACTGATTTTTGAATGAACT+TGG - chr6_3:24007259-24007278 Msa0945260:intron 25.0%
! TAGAATACCAATTGATTGTT+GGG - chr6_3:24007764-24007783 Msa0945260:intron 25.0%
! AACATTTACATAGAGTAACA+AGG - chr6_3:24007931-24007950 Msa0945260:intron 25.0%
!! AGTAACTTTTCATCTATCTT+TGG - chr6_3:24008049-24008068 Msa0945260:intron 25.0%
! AAGCATTAACTATGTCTTTA+AGG + chr6_3:24008096-24008115 None:intergenic 25.0%
!!! TACAATCCAAGGTATTTTTA+TGG - chr6_3:24008145-24008164 Msa0945260:intron 25.0%
!!! TTTTTTAGTAGTTCGTGAAA+GGG - chr6_3:24008183-24008202 Msa0945260:intron 25.0%
!!! TGCTTTTACTATTTCTTTGT+AGG - chr6_3:24008252-24008271 Msa0945260:intron 25.0%
!! TTACTATTTCTTTGTAGGAT+TGG - chr6_3:24008257-24008276 Msa0945260:intron 25.0%
! AATTATTGGAATTACTGATG+TGG - chr6_3:24008484-24008503 Msa0945260:intron 25.0%
! CTTATATATGATAAATCCAC+AGG + chr6_3:24008655-24008674 None:intergenic 25.0%
! CACTAATATGTATAGTTAGA+TGG + chr6_3:24008861-24008880 None:intergenic 25.0%
! CATCTAACTATACATATTAG+TGG - chr6_3:24008859-24008878 Msa0945260:intron 25.0%
! GAAAATTGTAGAAACTTACA+TGG - chr6_3:24008993-24009012 Msa0945260:CDS 25.0%
!!! AAGTGACACTTATTTTGAAA+CGG + chr6_3:24009053-24009072 None:intergenic 25.0%
!! AATTAATTAGAGGGTACAAT+TGG + chr6_3:24009144-24009163 None:intergenic 25.0%
! TGTACACTCAATTAATTAGA+GGG + chr6_3:24009153-24009172 None:intergenic 25.0%
!! TTACTATTGGTGTAATGTTT+TGG + chr6_3:24009182-24009201 None:intergenic 25.0%
! CATTACACCAATAGTAAATA+AGG - chr6_3:24009185-24009204 Msa0945260:intron 25.0%
! CAGATTGATAAATGTAATGA+TGG + chr6_3:24009243-24009262 None:intergenic 25.0%
! TATGAAGTGAAATATGGTAT+TGG + chr6_3:24009346-24009365 None:intergenic 25.0%
! AAACATCAGAATTCATTTGT+GGG + chr6_3:24010088-24010107 None:intergenic 25.0%
! TAATAACAAAATTAATCCGG+TGG - chr6_3:24010352-24010371 Msa0945260:intron 25.0%
!!! TTTTTGATGTGTTCTAAACT+AGG - chr6_3:24010876-24010895 Msa0945260:CDS 25.0%
!!! TTTTGATGTGTTCTAAACTA+GGG - chr6_3:24010877-24010896 Msa0945260:CDS 25.0%
!!! ACTAGGGAATTTTTTTGAAA+TGG - chr6_3:24010893-24010912 Msa0945260:exon 25.0%
!!! GACTAATTCTTTTTATTTGG+GGG - chr6_3:24010950-24010969 Msa0945260:five_prime_UTR 25.0%
!!! ACTAATTCTTTTTATTTGGG+GGG - chr6_3:24010951-24010970 Msa0945260:five_prime_UTR 25.0%
! ATAACTTAGGATCAATACTT+AGG - chr6_3:24011116-24011135 Msa0945260:five_prime_UTR 25.0%
!! ACATTTAACTTAAGGCAAAT+TGG - chr6_3:24011174-24011193 Msa0945260:five_prime_UTR 25.0%
AGAGGGAAAAAGAAAGTAAA+AGG - chr6_3:24005926-24005945 Msa0945260:three_prime_UTR 30.0%
GAACCCAAAAAAGAAACAAA+AGG - chr6_3:24005952-24005971 Msa0945260:three_prime_UTR 30.0%
! AAAGAAGGTCTCTTTCTTTT+TGG - chr6_3:24006035-24006054 Msa0945260:three_prime_UTR 30.0%
!! TCTCTTTCTTTTTGGTGTAT+TGG - chr6_3:24006043-24006062 Msa0945260:three_prime_UTR 30.0%
!! CTCTTTCTTTTTGGTGTATT+GGG - chr6_3:24006044-24006063 Msa0945260:three_prime_UTR 30.0%
AAGATTCTCTTCACTATGAT+GGG - chr6_3:24006213-24006232 Msa0945260:intron 30.0%
TCATCTTCAAGTACAAGTAT+AGG - chr6_3:24006285-24006304 Msa0945260:intron 30.0%
! GAATGTTGTCTTTTATTGGT+CGG - chr6_3:24006561-24006580 Msa0945260:CDS 30.0%
! AATGTTGTCTTTTATTGGTC+GGG - chr6_3:24006562-24006581 Msa0945260:CDS 30.0%
!!! TCTTTTTGGGTTTTTACATG+TGG - chr6_3:24006649-24006668 Msa0945260:CDS 30.0%
!!! CTTTTTGGGTTTTTACATGT+GGG - chr6_3:24006650-24006669 Msa0945260:CDS 30.0%
ATCTATGTTAGTGTCAAGTT+TGG - chr6_3:24006709-24006728 Msa0945260:CDS 30.0%
!!! TTTTTGGTTCAGTTCTGTTT+TGG - chr6_3:24006978-24006997 Msa0945260:CDS 30.0%
GTTAAGTGTCATATTACCAA+AGG - chr6_3:24007124-24007143 Msa0945260:CDS 30.0%
ATTTAATCCACTTCCTCTTT+AGG - chr6_3:24007611-24007630 Msa0945260:intron 30.0%
TATAAGGACAAGAACATTTC+AGG - chr6_3:24007741-24007760 Msa0945260:intron 30.0%
GTAGAATACCAATTGATTGT+TGG - chr6_3:24007763-24007782 Msa0945260:intron 30.0%
ATACAAACCCAACAATCAAT+TGG + chr6_3:24007774-24007793 None:intergenic 30.0%
! GATTGTTGGGTTTGTATTTT+CGG - chr6_3:24007777-24007796 Msa0945260:intron 30.0%
AACAAGAAGAAACTTGTATC+TGG - chr6_3:24007863-24007882 Msa0945260:intron 30.0%
TGTCGCGAAATATAAAATGT+CGG + chr6_3:24007963-24007982 None:intergenic 30.0%
GAATAGCCATAAAAATACCT+TGG + chr6_3:24008154-24008173 None:intergenic 30.0%
!!! GTTTTTTAGTAGTTCGTGAA+AGG - chr6_3:24008182-24008201 Msa0945260:intron 30.0%
! CTCTTTAAGAATTTGTGGAT+AGG + chr6_3:24008302-24008321 None:intergenic 30.0%
CAACTGAGTAAGAATAATCA+AGG + chr6_3:24008325-24008344 None:intergenic 30.0%
CTTGATTATTCTTACTCAGT+TGG - chr6_3:24008323-24008342 Msa0945260:intron 30.0%
CTGTGAATCTGCATAATAAA+AGG + chr6_3:24008460-24008479 None:intergenic 30.0%
! CTTTTATTATGCAGATTCAC+AGG - chr6_3:24008458-24008477 Msa0945260:intron 30.0%
AGATTCACAGGACTAATTAT+TGG - chr6_3:24008470-24008489 Msa0945260:intron 30.0%
CCTAATAAACGAAGTTAGAA+AGG + chr6_3:24008565-24008584 None:intergenic 30.0%
CCTTTCTAACTTCGTTTATT+AGG - chr6_3:24008562-24008581 Msa0945260:intron 30.0%
CAGGCTATATAATAAAACGA+CGG + chr6_3:24008799-24008818 None:intergenic 30.0%
TTATTATATAGCCTGCACTT+AGG - chr6_3:24008804-24008823 Msa0945260:CDS 30.0%
!! TGTATTCCTTTAGAATGAGA+AGG - chr6_3:24008920-24008939 Msa0945260:intron 30.0%
AATAGTCCTTCTCATTCTAA+AGG + chr6_3:24008929-24008948 None:intergenic 30.0%
GTGTACACTCAATTAATTAG+AGG + chr6_3:24009154-24009173 None:intergenic 30.0%
!! TTCAAAATGAGTGTCGTTTA+AGG + chr6_3:24009276-24009295 None:intergenic 30.0%
!!! ACACTCATTTTGAAACAGAA+GGG - chr6_3:24009282-24009301 Msa0945260:CDS 30.0%
!! AAGGGAGTATTACTTAACAT+AGG - chr6_3:24009300-24009319 Msa0945260:CDS 30.0%
! CTTGAAGTAACTCAAGTTTT+TGG - chr6_3:24009399-24009418 Msa0945260:intron 30.0%
CAAGTAGTAATGAGGTTAAT+AGG + chr6_3:24009551-24009570 None:intergenic 30.0%
ATTGACTGATTGCAATCAAA+TGG - chr6_3:24009595-24009614 Msa0945260:intron 30.0%
! ATTTCTCATCATTTCAGGTA+AGG - chr6_3:24009619-24009638 Msa0945260:intron 30.0%
! TTGCAAGGTCAAGAAATTTT+AGG - chr6_3:24009942-24009961 Msa0945260:intron 30.0%
GAAACATCAGAATTCATTTG+TGG + chr6_3:24010089-24010108 None:intergenic 30.0%
!! TATGCTTCTGAAATGAAAGA+TGG - chr6_3:24010404-24010423 Msa0945260:intron 30.0%
!!! TTTGGTTTTTCATTAACCGA+GGG - chr6_3:24010578-24010597 Msa0945260:intron 30.0%
! TCTGCATCTTTATTTGCAAT+GGG + chr6_3:24010608-24010627 None:intergenic 30.0%
! TTCTGCATCTTTATTTGCAA+TGG + chr6_3:24010609-24010628 None:intergenic 30.0%
TTGAAGATGATTTCAATCCA+AGG - chr6_3:24010684-24010703 Msa0945260:CDS 30.0%
AGGATGAATATTGCTTACTT+TGG + chr6_3:24010747-24010766 None:intergenic 30.0%
! CTAGCGTACTTTTCTTTAAA+TGG - chr6_3:24010796-24010815 Msa0945260:CDS 30.0%
TGTAACTTAATATTGTCTGC+AGG - chr6_3:24010981-24011000 Msa0945260:five_prime_UTR 30.0%
GTAACTTAATATTGTCTGCA+GGG - chr6_3:24010982-24011001 Msa0945260:five_prime_UTR 30.0%
AATCTTGTATGCACTGTTTA+TGG - chr6_3:24011224-24011243 Msa0945260:five_prime_UTR 30.0%
AAAATGCTGCTAATGAAAGC+TGG - chr6_3:24005872-24005891 Msa0945260:three_prime_UTR 35.0%
GAGAAAGAGAAAGAGAAAGA+AGG - chr6_3:24006014-24006033 Msa0945260:three_prime_UTR 35.0%
CAAGATTCTCTTCACTATGA+TGG - chr6_3:24006212-24006231 Msa0945260:intron 35.0%
AGTACAAGTATAGGTAGTGT+TGG - chr6_3:24006294-24006313 Msa0945260:intron 35.0%
!! TTCTGGTTCTTCTGTTTGTT+TGG - chr6_3:24006332-24006351 Msa0945260:intron 35.0%
TTCTTTGGCAAAGAGATCAT+AGG + chr6_3:24006381-24006400 None:intergenic 35.0%
ATGATCTCTTTGCCAAAGAA+AGG - chr6_3:24006381-24006400 Msa0945260:intron 35.0%
ACAACAACACTTCCTTTCTT+TGG + chr6_3:24006396-24006415 None:intergenic 35.0%
GATTTGTACGCTGAAAAGAA+GGG + chr6_3:24006541-24006560 None:intergenic 35.0%
TTGCTCAATGAGGAAATTGA+TGG - chr6_3:24006679-24006698 Msa0945260:CDS 35.0%
TGCTCAATGAGGAAATTGAT+GGG - chr6_3:24006680-24006699 Msa0945260:CDS 35.0%
!! GAGTGAAACTTGTTATGGTT+TGG - chr6_3:24006821-24006840 Msa0945260:CDS 35.0%
CATAGAATGTGTATTTGTGC+AGG - chr6_3:24006870-24006889 Msa0945260:CDS 35.0%
TTACTCAGTGTCTAAGTCTT+AGG - chr6_3:24007048-24007067 Msa0945260:CDS 35.0%
TACTCAGTGTCTAAGTCTTA+GGG - chr6_3:24007049-24007068 Msa0945260:CDS 35.0%
CCTATAGCTACTTAGTACTA+TGG + chr6_3:24007159-24007178 None:intergenic 35.0%
CCATAGTACTAAGTAGCTAT+AGG - chr6_3:24007156-24007175 Msa0945260:CDS 35.0%
!! GTTGCACTTGCTATAAAAAG+TGG + chr6_3:24007285-24007304 None:intergenic 35.0%
ATTTCAAAGTAGCACACTCA+AGG + chr6_3:24007494-24007513 None:intergenic 35.0%
TGTTGAGAGTAATCCTAAAG+AGG + chr6_3:24007627-24007646 None:intergenic 35.0%
AAGTTTCGGCATATATACAG+AGG - chr6_3:24007696-24007715 Msa0945260:intron 35.0%
TTTCGGTTTCTAATAAACGC+AGG - chr6_3:24007794-24007813 Msa0945260:intron 35.0%
TTCGGTTTCTAATAAACGCA+GGG - chr6_3:24007795-24007814 Msa0945260:intron 35.0%
TAGAATGTAGGTCATCTTAC+CGG + chr6_3:24007907-24007926 None:intergenic 35.0%
TGGATTGTAGTGTATGCTAA+AGG + chr6_3:24008134-24008153 None:intergenic 35.0%
TTAGCATACACTACAATCCA+AGG - chr6_3:24008134-24008153 Msa0945260:intron 35.0%
! CAAGGCTCTTTAAGAATTTG+TGG + chr6_3:24008307-24008326 None:intergenic 35.0%
ATTCTTACTCAGTTGGAATG+AGG - chr6_3:24008330-24008349 Msa0945260:intron 35.0%
ATCAAAATGGAAATGCCTAG+TGG - chr6_3:24008526-24008545 Msa0945260:intron 35.0%
TATGCTTGAAATTGGGTGTT+AGG - chr6_3:24008596-24008615 Msa0945260:CDS 35.0%
TATAGTTAGATGGAAGACAG+AGG + chr6_3:24008851-24008870 None:intergenic 35.0%
CCATAAAGCCAGTTCAATAA+TGG + chr6_3:24008968-24008987 None:intergenic 35.0%
!! CCATTATTGAACTGGCTTTA+TGG - chr6_3:24008965-24008984 Msa0945260:intron 35.0%
!!! GACACTTATTTTGAAACGGA+GGG + chr6_3:24009049-24009068 None:intergenic 35.0%
!!! TGACACTTATTTTGAAACGG+AGG + chr6_3:24009050-24009069 None:intergenic 35.0%
!!! GACACTCATTTTGAAACAGA+AGG - chr6_3:24009281-24009300 Msa0945260:CDS 35.0%
CGTAAAGTATAGACAATGTC+AGG + chr6_3:24009377-24009396 None:intergenic 35.0%
!! TTGATTGCATTTGCTGTTCA+TGG - chr6_3:24009510-24009529 Msa0945260:intron 35.0%
ACCTCATTACTACTTGTTTG+TGG - chr6_3:24009555-24009574 Msa0945260:intron 35.0%
ACCACAAACAAGTAGTAATG+AGG + chr6_3:24009559-24009578 None:intergenic 35.0%
ATGGCATTTCTCATCATTTC+AGG - chr6_3:24009614-24009633 Msa0945260:intron 35.0%
TTCATCAAAGCTAGAGTTTC+CGG - chr6_3:24009767-24009786 Msa0945260:CDS 35.0%
AATTCTACCTGTTAGAGGAA+TGG + chr6_3:24009880-24009899 None:intergenic 35.0%
ATTCCTCTAACAGGTAGAAT+TGG - chr6_3:24009879-24009898 Msa0945260:intron 35.0%
TTCCTCTAACAGGTAGAATT+GGG - chr6_3:24009880-24009899 Msa0945260:intron 35.0%
TCTGTAATTCAGATAACTGG+TGG + chr6_3:24010007-24010026 None:intergenic 35.0%
ACCAGTTATCTGAATTACAG+AGG - chr6_3:24010006-24010025 Msa0945260:intron 35.0%
ACCTCTGTAATTCAGATAAC+TGG + chr6_3:24010010-24010029 None:intergenic 35.0%
AATTCTGATGTTTCCTGCAA+TGG - chr6_3:24010095-24010114 Msa0945260:intron 35.0%
TAACAAAATTAATCCGGTGG+AGG - chr6_3:24010355-24010374 Msa0945260:intron 35.0%
!!! GTTTGGTTTTTCATTAACCG+AGG - chr6_3:24010577-24010596 Msa0945260:intron 35.0%
ATCTTCAACATGTCTTGTGA+AGG + chr6_3:24010672-24010691 None:intergenic 35.0%
AATGGCTGTGATATGTGTAA+TGG - chr6_3:24010911-24010930 Msa0945260:five_prime_UTR 35.0%
GATATTGAGGTGCATCATAT+AGG + chr6_3:24011251-24011270 None:intergenic 35.0%
! CTTTTTCCCTCTCACTGAAT+GGG + chr6_3:24005918-24005937 None:intergenic 40.0%
! TCTTTTTCCCTCTCACTGAA+TGG + chr6_3:24005919-24005938 None:intergenic 40.0%
!! TCTTTTTGGTGTATTGGGTC+AGG - chr6_3:24006049-24006068 Msa0945260:three_prime_UTR 40.0%
GATTGATCTCAACACTACTG+AGG - chr6_3:24006239-24006258 Msa0945260:intron 40.0%
GAAGATGAAACACCTTCTTC+TGG - chr6_3:24006261-24006280 Msa0945260:intron 40.0%
CTTGAAGATGAACCAGAAGA+AGG + chr6_3:24006276-24006295 None:intergenic 40.0%
! CTTCTGTTTGTTTGGAGCTA+TGG - chr6_3:24006340-24006359 Msa0945260:intron 40.0%
!! GTTGTTGTTTACTTCCCTCA+AGG - chr6_3:24006408-24006427 Msa0945260:CDS 40.0%
CGATTTGTACGCTGAAAAGA+AGG + chr6_3:24006542-24006561 None:intergenic 40.0%
!!! TGGGTTTTGTTTGCTCAATG+AGG - chr6_3:24006669-24006688 Msa0945260:CDS 40.0%
GTTAGTGTCAAGTTTGGCAT+AGG - chr6_3:24006715-24006734 Msa0945260:CDS 40.0%
!! TTTGGAGAGAGTGCTGAAAA+TGG - chr6_3:24006996-24007015 Msa0945260:CDS 40.0%
ACTCAGTGTCTAAGTCTTAG+GGG - chr6_3:24007050-24007069 Msa0945260:CDS 40.0%
ACTATGGTCTATGACTCCTT+TGG + chr6_3:24007143-24007162 None:intergenic 40.0%
GTAGCACTCTAGTGTTCAAA+AGG + chr6_3:24007212-24007231 None:intergenic 40.0%
AGCAAGTGCAACAAAAGTTG+AGG - chr6_3:24007293-24007312 Msa0945260:intron 40.0%
GCAAGTGCAACAAAAGTTGA+GGG - chr6_3:24007294-24007313 Msa0945260:intron 40.0%
TGCAACAAAAGTTGAGGGAA+GGG - chr6_3:24007299-24007318 Msa0945260:intron 40.0%
!! GTAATTGATGGTGATGGTGA+TGG - chr6_3:24007322-24007341 Msa0945260:intron 40.0%
GAGTAATCCTAAAGAGGAAG+TGG + chr6_3:24007621-24007640 None:intergenic 40.0%
TATTTCGCGACAATTGACAG+AGG - chr6_3:24007971-24007990 Msa0945260:intron 40.0%
ACAATTGACAGAGGAGAAGA+TGG - chr6_3:24007980-24007999 Msa0945260:intron 40.0%
AGAAGATGGCGAATTGAGAT+TGG - chr6_3:24007994-24008013 Msa0945260:intron 40.0%
GAAGATGGCGAATTGAGATT+GGG - chr6_3:24007995-24008014 Msa0945260:intron 40.0%
!! TTTTTAATTGAGCTGCCCTG+CGG + chr6_3:24008024-24008043 None:intergenic 40.0%
TTTGGCCAGCAATTGAATCT+TGG - chr6_3:24008067-24008086 Msa0945260:intron 40.0%
TTAGATGGCCTGGATCAAAA+TGG - chr6_3:24008513-24008532 Msa0945260:intron 40.0%
!! AGGCATTTCCATTTTGATCC+AGG + chr6_3:24008524-24008543 None:intergenic 40.0%
! AATGCCTAGTGGTATTTTGC+TGG - chr6_3:24008537-24008556 Msa0945260:intron 40.0%
! ATGCCTAGTGGTATTTTGCT+GGG - chr6_3:24008538-24008557 Msa0945260:intron 40.0%
TGAAATTGGGTGTTAGGAGA+TGG - chr6_3:24008602-24008621 Msa0945260:CDS 40.0%
ACAGTAGTACAGAACTCCTA+CGG + chr6_3:24008898-24008917 None:intergenic 40.0%
! AGTAGCTTAAGAAGTACGCT+CGG - chr6_3:24009431-24009450 Msa0945260:CDS 40.0%
TCTTCAAACATGCACACGAA+TGG + chr6_3:24009490-24009509 None:intergenic 40.0%
! TCTCATCATTTCAGGTAAGG+TGG - chr6_3:24009622-24009641 Msa0945260:intron 40.0%
! CTCATCATTTCAGGTAAGGT+GGG - chr6_3:24009623-24009642 Msa0945260:intron 40.0%
ACTAGTTGCCATCAAGCTAT+TGG + chr6_3:24009721-24009740 None:intergenic 40.0%
! TGATGGCAACTAGTTTGAAG+AGG - chr6_3:24009727-24009746 Msa0945260:CDS 40.0%
!! GGAAACTCTAGCTTTGATGA+AGG + chr6_3:24009768-24009787 None:intergenic 40.0%
AATTGAGACATACTGGGAAC+CGG + chr6_3:24009789-24009808 None:intergenic 40.0%
CAATGACGTTTCATTGCATG+AGG + chr6_3:24009847-24009866 None:intergenic 40.0%
AATTGCTCCATTCCTCTAAC+AGG - chr6_3:24009870-24009889 Msa0945260:intron 40.0%
AGAATTGGGACATCAGACTT+TGG - chr6_3:24009894-24009913 Msa0945260:intron 40.0%
GAATTGGGACATCAGACTTT+GGG - chr6_3:24009895-24009914 Msa0945260:intron 40.0%
AATTGGGACATCAGACTTTG+GGG - chr6_3:24009896-24009915 Msa0945260:intron 40.0%
TGAATCTTTCCGATTCCAGA+AGG - chr6_3:24010124-24010143 Msa0945260:intron 40.0%
ATACTTCCTAGCCAACCATA+TGG - chr6_3:24010164-24010183 Msa0945260:intron 40.0%
AAAAGGCTTGTCCATATGGT+TGG + chr6_3:24010178-24010197 None:intergenic 40.0%
ACAGAAAAGGCTTGTCCATA+TGG + chr6_3:24010182-24010201 None:intergenic 40.0%
CATAGAACGAACCTCTTTGA+AGG + chr6_3:24010388-24010407 None:intergenic 40.0%
CGGAAAATAGGCCTATTAGT+TGG + chr6_3:24010446-24010465 None:intergenic 40.0%
! ACTAATAGGCCTATTTTCCG+CGG - chr6_3:24010446-24010465 Msa0945260:intron 40.0%
CATGAAGACATGAACTCGTT+TGG - chr6_3:24010476-24010495 Msa0945260:intron 40.0%
!!! TCTGCAGCTACTTTTACATG+TGG + chr6_3:24010555-24010574 None:intergenic 40.0%
! AAAAGTAGCTGCAGAGTGTT+TGG - chr6_3:24010560-24010579 Msa0945260:intron 40.0%
TCAACATGTCTTGTGAAGGA+GGG + chr6_3:24010668-24010687 None:intergenic 40.0%
TTCAACATGTCTTGTGAAGG+AGG + chr6_3:24010669-24010688 None:intergenic 40.0%
! TCAATCCAAGGCATTCACTT+CGG - chr6_3:24010696-24010715 Msa0945260:CDS 40.0%
TCGATAATCATGTCTCTCAC+AGG + chr6_3:24010767-24010786 None:intergenic 40.0%
! GAATCTGCAAGTTTTCGAAC+TGG - chr6_3:24010818-24010837 Msa0945260:CDS 40.0%
ACTGGAATTGTTGATGTACG+AGG - chr6_3:24010836-24010855 Msa0945260:CDS 40.0%
!! CTCTCACTGAATGGGCTTTT+GGG + chr6_3:24005910-24005929 None:intergenic 45.0%
CAAAAGCCCATTCAGTGAGA+GGG - chr6_3:24005909-24005928 Msa0945260:three_prime_UTR 45.0%
AGTGAAAGCAGTGAGTGAGT+GGG - chr6_3:24005989-24006008 Msa0945260:three_prime_UTR 45.0%
AGCGTGAAGAACTTTGGCAT+TGG + chr6_3:24006083-24006102 None:intergenic 45.0%
!! ATAGGTAGTGTTGGTGCTGT+TGG - chr6_3:24006303-24006322 Msa0945260:intron 45.0%
TTACTTCCCTCAAGGACACT+TGG - chr6_3:24006416-24006435 Msa0945260:CDS 45.0%
GATGTTCCAAGTGTCCTTGA+GGG + chr6_3:24006425-24006444 None:intergenic 45.0%
AGATGTTCCAAGTGTCCTTG+AGG + chr6_3:24006426-24006445 None:intergenic 45.0%
ACACGACAGAACACATGAGA+AGG + chr6_3:24006483-24006502 None:intergenic 45.0%
ATGTGTATTTGTGCAGGCTG+AGG - chr6_3:24006876-24006895 Msa0945260:CDS 45.0%
TATTTGTGCAGGCTGAGGAA+GGG - chr6_3:24006881-24006900 Msa0945260:CDS 45.0%
GAACGATGAGGTGTATTGTC+AGG - chr6_3:24006903-24006922 Msa0945260:CDS 45.0%
! GGTGTATTGTCAGGTGTTGT+TGG - chr6_3:24006912-24006931 Msa0945260:CDS 45.0%
!! GTTGTTGGTTCCTGAAAGTG+AGG - chr6_3:24006927-24006946 Msa0945260:CDS 45.0%
ACAAGTCTCACCTCACTTTC+AGG + chr6_3:24006940-24006959 None:intergenic 45.0%
GTGCAACAAAAGTTGAGGGA+AGG - chr6_3:24007298-24007317 Msa0945260:intron 45.0%
GCAACAAAAGTTGAGGGAAG+GGG - chr6_3:24007300-24007319 Msa0945260:intron 45.0%
TTGAGGGAAGGGGTAATTGA+TGG - chr6_3:24007310-24007329 Msa0945260:intron 45.0%
!! GAAGGGGTAATTGATGGTGA+TGG - chr6_3:24007316-24007335 Msa0945260:intron 45.0%
AGAGTCTTGCAGAACATGTG+AGG + chr6_3:24007388-24007407 None:intergenic 45.0%
GCTTCTGATACTAGCACTCA+TGG - chr6_3:24007412-24007431 Msa0945260:CDS 45.0%
TCTGATACTAGCACTCATGG+TGG - chr6_3:24007415-24007434 Msa0945260:CDS 45.0%
ACACTCAAGGTAAGTACCAG+GGG + chr6_3:24007481-24007500 None:intergenic 45.0%
CACACTCAAGGTAAGTACCA+GGG + chr6_3:24007482-24007501 None:intergenic 45.0%
AAGACCTTCACAAGAGCTTG+TGG - chr6_3:24007647-24007666 Msa0945260:intron 45.0%
TTTGCCACAAGCTCTTGTGA+AGG + chr6_3:24007654-24007673 None:intergenic 45.0%
TTCACAAGAGCTTGTGGCAA+AGG - chr6_3:24007653-24007672 Msa0945260:intron 45.0%
TATGCCGAAACTTCCATTCC+TGG + chr6_3:24007689-24007708 None:intergenic 45.0%
AATGTAGGTCATCTTACCGG+AGG + chr6_3:24007904-24007923 None:intergenic 45.0%
AATTGAGATTGGGAATCCGC+AGG - chr6_3:24008005-24008024 Msa0945260:intron 45.0%
ATTGAGATTGGGAATCCGCA+GGG - chr6_3:24008006-24008025 Msa0945260:intron 45.0%
GGCTACCAAGATTCAATTGC+TGG + chr6_3:24008075-24008094 None:intergenic 45.0%
ACTCAGTTGGAATGAGGTTC+AGG - chr6_3:24008336-24008355 Msa0945260:intron 45.0%
CTGATGTGGATCCTGTTAGA+TGG - chr6_3:24008498-24008517 Msa0945260:intron 45.0%
TTTGATCCAGGCCATCTAAC+AGG + chr6_3:24008512-24008531 None:intergenic 45.0%
CACAGGAGTTTCCTTAACTG+CGG + chr6_3:24008638-24008657 None:intergenic 45.0%
CCTGTGTCATCCTGTCATAT+GGG - chr6_3:24008712-24008731 Msa0945260:intron 45.0%
CTGTGTCATCCTGTCATATG+GGG - chr6_3:24008713-24008732 Msa0945260:intron 45.0%
TAACACAAGCACCTAAGTGC+AGG + chr6_3:24008818-24008837 None:intergenic 45.0%
TGGCACACTTTCAAAACCGT+AGG - chr6_3:24008879-24008898 Msa0945260:intron 45.0%
TTCCACCACCAATAGCTTGA+TGG - chr6_3:24009710-24009729 Msa0945260:CDS 45.0%
AGTTGCCATCAAGCTATTGG+TGG + chr6_3:24009718-24009737 None:intergenic 45.0%
AGTTTGAAGAGGACCAAGAC+TGG - chr6_3:24009738-24009757 Msa0945260:CDS 45.0%
TGATGAAGGCAATCCAGTCT+TGG + chr6_3:24009754-24009773 None:intergenic 45.0%
GTCCCAATTCTACCTGTTAG+AGG + chr6_3:24009885-24009904 None:intergenic 45.0%
!! GAATTACAGAGGTGCTATCC+CGG - chr6_3:24010017-24010036 Msa0945260:intron 45.0%
GATGTTTCCTGCAATGGCTT+TGG - chr6_3:24010101-24010120 Msa0945260:intron 45.0%
AGATTCACCAAAGCCATTGC+AGG + chr6_3:24010111-24010130 None:intergenic 45.0%
!! CTTGCAAGACCTTCTGGAAT+CGG + chr6_3:24010136-24010155 None:intergenic 45.0%
! ACAAGCCTTTTCTGTCAACG+AGG - chr6_3:24010187-24010206 Msa0945260:intron 45.0%
ACAAGCCTCGTTGACAGAAA+AGG + chr6_3:24010195-24010214 None:intergenic 45.0%
GTCAACGAGGCTTGTAGAAA+TGG - chr6_3:24010200-24010219 Msa0945260:CDS 45.0%
GCTTGTAGAAATGGTCGCTT+TGG - chr6_3:24010209-24010228 Msa0945260:CDS 45.0%
!! GGTCGCTTTGGACTTTTTGA+TGG - chr6_3:24010221-24010240 Msa0945260:CDS 45.0%
!! ACTTTTTGATGGTCACCACC+AGG - chr6_3:24010232-24010251 Msa0945260:intron 45.0%
TGCCAAGATCCACAAATGGA+TGG - chr6_3:24010255-24010274 Msa0945260:intron 45.0%
GACCATCCATTTGTGGATCT+TGG + chr6_3:24010260-24010279 None:intergenic 45.0%
CAGAGAAGACCATCCATTTG+TGG + chr6_3:24010267-24010286 None:intergenic 45.0%
TGCTGGTACATCAACACTGA+TGG + chr6_3:24010314-24010333 None:intergenic 45.0%
GAGGATAACGTCCTTCAAAG+AGG - chr6_3:24010374-24010393 Msa0945260:intron 45.0%
! CTAATAGGCCTATTTTCCGC+GGG - chr6_3:24010447-24010466 Msa0945260:intron 45.0%
GAGTTCATGTCTTCATGAGC+TGG + chr6_3:24010473-24010492 None:intergenic 45.0%
TGGTACACATTCACGCGATT+TGG - chr6_3:24010496-24010515 Msa0945260:intron 45.0%
TTGGTTGCACTACAGAGAAG+CGG - chr6_3:24010515-24010534 Msa0945260:intron 45.0%
GTCACTTGCCAGATAAATCC+TGG - chr6_3:24010638-24010657 Msa0945260:CDS 45.0%
ATGCATGCTAAGACTGATGC+TGG - chr6_3:24011034-24011053 Msa0945260:five_prime_UTR 45.0%
!!! ATGTTTTTTTTTTTTTTTTT+TGG - chr6_3:24006962-24006981 Msa0945260:CDS 5.0%
!! CACTGAATGGGCTTTTGGGT+AGG + chr6_3:24005906-24005925 None:intergenic 50.0%
!! CCTCTCACTGAATGGGCTTT+TGG + chr6_3:24005911-24005930 None:intergenic 50.0%
CCAAAAGCCCATTCAGTGAG+AGG - chr6_3:24005908-24005927 Msa0945260:three_prime_UTR 50.0%
GAGTGAAAGCAGTGAGTGAG+TGG - chr6_3:24005988-24006007 Msa0945260:three_prime_UTR 50.0%
! GCAGAGAGCGTGAAGAACTT+TGG + chr6_3:24006089-24006108 None:intergenic 50.0%
!! AGTGTTGGTGCTGTTGGTTC+TGG - chr6_3:24006309-24006328 Msa0945260:intron 50.0%
GTATTTGTGCAGGCTGAGGA+AGG - chr6_3:24006880-24006899 Msa0945260:CDS 50.0%
!! GATGGTGATGGTGATGGTGA+AGG - chr6_3:24007328-24007347 Msa0945260:intron 50.0%
!! TGATGGTGATGGTGAAGGAG+AGG - chr6_3:24007333-24007352 Msa0945260:intron 50.0%
CAGGGGAGGAAAGCAATCTT+CGG + chr6_3:24007464-24007483 None:intergenic 50.0%
GCACACTCAAGGTAAGTACC+AGG + chr6_3:24007483-24007502 None:intergenic 50.0%
ACGGCCAGGAATGGAAGTTT+CGG - chr6_3:24007682-24007701 Msa0945260:intron 50.0%
GTCGTAAGCAAATGCCTTCG+TGG + chr6_3:24007824-24007843 None:intergenic 50.0%
!! CGAAGGCATTTGCTTACGAC+TGG - chr6_3:24007824-24007843 Msa0945260:intron 50.0%
GGCATTTGCTTACGACTGGA+TGG - chr6_3:24007828-24007847 Msa0945260:intron 50.0%
GAGATGCTGTTCTGTTCCTC+CGG - chr6_3:24007885-24007904 Msa0945260:intron 50.0%
GGTCCCAGCAAAATACCACT+AGG + chr6_3:24008544-24008563 None:intergenic 50.0%
GCTTGTTCTGACCGCAGTTA+AGG - chr6_3:24008624-24008643 Msa0945260:CDS 50.0%
CGCAGTTAAGGAAACTCCTG+TGG - chr6_3:24008636-24008655 Msa0945260:CDS 50.0%
GCCTGTGTCATCCTGTCATA+TGG - chr6_3:24008711-24008730 Msa0945260:intron 50.0%
CCCATATGACAGGATGACAC+AGG + chr6_3:24008715-24008734 None:intergenic 50.0%
AGGCTTCAACCCCATATGAC+AGG + chr6_3:24008725-24008744 None:intergenic 50.0%
TCAGGTAAGGTGGGATGACA+TGG - chr6_3:24009632-24009651 Msa0945260:intron 50.0%
GGGATGACATGGAAGCTTCA+AGG - chr6_3:24009643-24009662 Msa0945260:intron 50.0%
TGGAAGCTTCAAGGCTCAAC+AGG - chr6_3:24009652-24009671 Msa0945260:intron 50.0%
GGAAGCTTCAAGGCTCAACA+GGG - chr6_3:24009653-24009672 Msa0945260:CDS 50.0%
GCTCAACAGGGTTTCACCAT+GGG - chr6_3:24009665-24009684 Msa0945260:CDS 50.0%
TGCCATCAAGCTATTGGTGG+TGG + chr6_3:24009715-24009734 None:intergenic 50.0%
! CAGACTTTGGGGAATCACTG+CGG - chr6_3:24009907-24009926 Msa0945260:intron 50.0%
CTTGACCTTGCAAGACCTTC+TGG + chr6_3:24009935-24009954 None:intergenic 50.0%
TATCCCGGTTCAACCTATCC+CGG - chr6_3:24010032-24010051 Msa0945260:intron 50.0%
TTTCCTGTTGAAGCGATCCC+GGG + chr6_3:24010053-24010072 None:intergenic 50.0%
GTTTCCTGTTGAAGCGATCC+CGG + chr6_3:24010054-24010073 None:intergenic 50.0%
CGATTCCAGAAGGTCTTGCA+AGG - chr6_3:24010134-24010153 Msa0945260:intron 50.0%
CTTGACCTTGCAAGACCTTC+TGG + chr6_3:24009935-24009954 None:intergenic 50.0%
! GCTTGTCCATATGGTTGGCT+AGG + chr6_3:24010173-24010192 None:intergenic 50.0%
CATTTGTGGATCTTGGCACC+TGG + chr6_3:24010253-24010272 None:intergenic 50.0%
CAGGTGCCAAGATCCACAAA+TGG - chr6_3:24010251-24010270 Msa0945260:intron 50.0%
AATCCATGGTTGACGCTTGC+TGG + chr6_3:24010331-24010350 None:intergenic 50.0%
TGAAGGACGTTATCCTCCAC+CGG + chr6_3:24010371-24010390 None:intergenic 50.0%
CTGCCTCAACGCCAACTAAT+AGG - chr6_3:24010432-24010451 Msa0945260:intron 50.0%
AGGCCTATTAGTTGGCGTTG+AGG + chr6_3:24010438-24010457 None:intergenic 50.0%
ACAGAGAAGCGGTCAAGAGT+TGG - chr6_3:24010526-24010545 Msa0945260:intron 50.0%
!! ATTTGCAATGGGAGCACCCT+CGG + chr6_3:24010597-24010616 None:intergenic 50.0%
ATCTGGCAAGTGACTGCAGA+GGG + chr6_3:24010632-24010651 None:intergenic 50.0%
TATCTGGCAAGTGACTGCAG+AGG + chr6_3:24010633-24010652 None:intergenic 50.0%
AGGGAGGTCCAGGATTTATC+TGG + chr6_3:24010649-24010668 None:intergenic 50.0%
ACATGTCTTGTGAAGGAGGG+AGG + chr6_3:24010665-24010684 None:intergenic 50.0%
TTGCTCCGAAGTGAATGCCT+TGG + chr6_3:24010704-24010723 None:intergenic 50.0%
! AAGGCATTCACTTCGGAGCA+AGG - chr6_3:24010703-24010722 Msa0945260:CDS 50.0%
!! CTAAGACTGATGCTGGCTTG+AGG - chr6_3:24011041-24011060 Msa0945260:five_prime_UTR 50.0%
!! GGTGCTGTTGGTTCTGGTTC+TGG - chr6_3:24006315-24006334 Msa0945260:intron 55.0%
GAGCTATGGCATGCTTGTGC+TGG - chr6_3:24006354-24006373 Msa0945260:intron 55.0%
CGAAGATTGCTTTCCTCCCC+TGG - chr6_3:24007462-24007481 Msa0945260:CDS 55.0%
CTCAAGGTAAGTACCAGGGG+AGG + chr6_3:24007478-24007497 None:intergenic 55.0%
CTTGTGGCAAAGGACCTGCA+CGG - chr6_3:24007663-24007682 Msa0945260:intron 55.0%
CTGAAGATGCTGCAGAGCGA+AGG - chr6_3:24008372-24008391 Msa0945260:intron 55.0%
GTGGATCCTGTTAGATGGCC+TGG - chr6_3:24008503-24008522 Msa0945260:intron 55.0%
GACAGGATGACACAGGCATG+AGG + chr6_3:24008708-24008727 None:intergenic 55.0%
GGCTCAACAGGGTTTCACCA+TGG - chr6_3:24009664-24009683 Msa0945260:CDS 55.0%
! GTGGTGGAAGATGAGCCTGA+GGG + chr6_3:24009699-24009718 None:intergenic 55.0%
GGAATCACTGCGGTTCCAGA+AGG - chr6_3:24009917-24009936 Msa0945260:intron 55.0%
CGGTTCCAGAAGGTCTTGCA+AGG - chr6_3:24009927-24009946 Msa0945260:intron 55.0%
ATCCCGGTTCAACCTATCCC+GGG - chr6_3:24010033-24010052 Msa0945260:intron 55.0%
! ATCCCGGGATAGGTTGAACC+GGG + chr6_3:24010038-24010057 None:intergenic 55.0%
! GATCCCGGGATAGGTTGAAC+CGG + chr6_3:24010039-24010058 None:intergenic 55.0%
TGTTGAAGCGATCCCGGGAT+AGG + chr6_3:24010048-24010067 None:intergenic 55.0%
TATCCCGGGATCGCTTCAAC+AGG - chr6_3:24010047-24010066 Msa0945260:intron 55.0%
TTGTGGATCTTGGCACCTGG+TGG + chr6_3:24010250-24010269 None:intergenic 55.0%
GTACCAGCAAGCGTCAACCA+TGG - chr6_3:24010325-24010344 Msa0945260:intron 55.0%
GCATTCACTTCGGAGCAAGG+CGG - chr6_3:24010706-24010725 Msa0945260:CDS 55.0%
GGCTGAGGAAGGGAACGATG+AGG - chr6_3:24006891-24006910 Msa0945260:CDS 60.0%
CAATCTTCGGCTGCTCGACG+AGG + chr6_3:24007451-24007470 None:intergenic 60.0%
ACTTCCATTCCTGGCCGTGC+AGG + chr6_3:24007680-24007699 None:intergenic 60.0%
TAAACGCAGGGCAGCCACGA+AGG - chr6_3:24007807-24007826 Msa0945260:intron 60.0%
CCTGAGGGCTCAATCTCCCA+TGG + chr6_3:24009684-24009703 None:intergenic 60.0%
CCATGGGAGATTGAGCCCTC+AGG - chr6_3:24009681-24009700 Msa0945260:CDS 60.0%
!! GGTGGTGGAAGATGAGCCTG+AGG + chr6_3:24009700-24009719 None:intergenic 60.0%
TGAGCTGGCCCGCGGAAAAT+AGG + chr6_3:24010458-24010477 None:intergenic 60.0%
TGTCTTCATGAGCTGGCCCG+CGG + chr6_3:24010466-24010485 None:intergenic 60.0%
CTTGTGAAGGAGGGAGGTCC+AGG + chr6_3:24010659-24010678 None:intergenic 60.0%
AGGACCTGCACGGCCAGGAA+TGG - chr6_3:24007673-24007692 Msa0945260:intron 65.0%
GGCAAAGGACCTGCACGGCC+AGG - chr6_3:24007668-24007687 Msa0945260:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 24005865 24011271 24005865 ID=Msa0945260;Name=Msa0945260
chr6_3 mRNA 24005865 24011271 24005865 ID=Msa0945260-mRNA-1;Parent=Msa0945260;Name=Msa0945260-mRNA-1;_AED=0.09;_eAED=0.09;_QI=363|1|0.90|1|0.9|0.81|11|251|703
chr6_3 exon 24005865 24006133 24005865 ID=Msa0945260-mRNA-1:exon:6802;Parent=Msa0945260-mRNA-1
chr6_3 exon 24006388 24007244 24006388 ID=Msa0945260-mRNA-1:exon:6801;Parent=Msa0945260-mRNA-1
chr6_3 exon 24007341 24007500 24007341 ID=Msa0945260-mRNA-1:exon:6800;Parent=Msa0945260-mRNA-1
chr6_3 exon 24008589 24008664 24008589 ID=Msa0945260-mRNA-1:exon:6799;Parent=Msa0945260-mRNA-1
chr6_3 exon 24008743 24008862 24008743 ID=Msa0945260-mRNA-1:exon:6798;Parent=Msa0945260-mRNA-1
chr6_3 exon 24008981 24009145 24008981 ID=Msa0945260-mRNA-1:exon:6797;Parent=Msa0945260-mRNA-1
chr6_3 exon 24009230 24009320 24009230 ID=Msa0945260-mRNA-1:exon:6796;Parent=Msa0945260-mRNA-1
chr6_3 exon 24009419 24009503 24009419 ID=Msa0945260-mRNA-1:exon:6795;Parent=Msa0945260-mRNA-1
chr6_3 exon 24009653 24009841 24009653 ID=Msa0945260-mRNA-1:exon:6794;Parent=Msa0945260-mRNA-1
chr6_3 exon 24010188 24010244 24010188 ID=Msa0945260-mRNA-1:exon:6793;Parent=Msa0945260-mRNA-1
chr6_3 exon 24010615 24011271 24010615 ID=Msa0945260-mRNA-1:exon:6792;Parent=Msa0945260-mRNA-1
chr6_3 five_prime_UTR 24010909 24011271 24010909 ID=Msa0945260-mRNA-1:five_prime_utr;Parent=Msa0945260-mRNA-1
chr6_3 CDS 24010615 24010908 24010615 ID=Msa0945260-mRNA-1:cds;Parent=Msa0945260-mRNA-1
chr6_3 CDS 24010188 24010244 24010188 ID=Msa0945260-mRNA-1:cds;Parent=Msa0945260-mRNA-1
chr6_3 CDS 24009653 24009841 24009653 ID=Msa0945260-mRNA-1:cds;Parent=Msa0945260-mRNA-1
chr6_3 CDS 24009419 24009503 24009419 ID=Msa0945260-mRNA-1:cds;Parent=Msa0945260-mRNA-1
chr6_3 CDS 24009230 24009320 24009230 ID=Msa0945260-mRNA-1:cds;Parent=Msa0945260-mRNA-1
chr6_3 CDS 24008981 24009145 24008981 ID=Msa0945260-mRNA-1:cds;Parent=Msa0945260-mRNA-1
chr6_3 CDS 24008743 24008862 24008743 ID=Msa0945260-mRNA-1:cds;Parent=Msa0945260-mRNA-1
chr6_3 CDS 24008589 24008664 24008589 ID=Msa0945260-mRNA-1:cds;Parent=Msa0945260-mRNA-1
chr6_3 CDS 24007341 24007500 24007341 ID=Msa0945260-mRNA-1:cds;Parent=Msa0945260-mRNA-1
chr6_3 CDS 24006388 24007244 24006388 ID=Msa0945260-mRNA-1:cds;Parent=Msa0945260-mRNA-1
chr6_3 CDS 24006116 24006133 24006116 ID=Msa0945260-mRNA-1:cds;Parent=Msa0945260-mRNA-1
chr6_3 three_prime_UTR 24005865 24006115 24005865 ID=Msa0945260-mRNA-1:three_prime_utr;Parent=Msa0945260-mRNA-1
Gene Sequence

>Msa0945260

ATGATGGGTTTGATTGATCTCAACACTACTGAGGAAGATGAAACACCTTCTTCTGGTTCATCTTCAAGTACAAGTATAGGTAGTGTTGGTGCTGTTGGTTCTGGTTCTGGTTCTTCTGTTTGTTTGGAGCTATGGCATGCTTGTGCTGGTCCTATGATCTCTTTGCCAAAGAAAGGAAGTGTTGTTGTTTACTTCCCTCAAGGACACTTGGAACATCTTCATGATTTTCCGTTATCTTTTTCGGATAATATTCCTTCTCATGTGTTCTGTCGTGTTGTTGATGTCAAGCTTCATGCTGAGGAAGGGAACGATGAGGTGTATTGTCAGGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGCAACAAAAGTTGAGGGAAGGGGTAATTGATGGTGATGGTGATGGTGAAGGAGAGGATACTGATGCTGTTATGAAGTCAACGACACCTCACATGTTCTGCAAGACTCTTACTGCTTCTGATACTAGCACTCATGGTGGATTCTCTGTACCTCGTCGAGCAGCCGAAGATTGCTTTCCTCCCCTGGATTACTCTCAACAAAGACCTTCACAAGAGCTTGTGGCAAAGGACCTGCACGGCCAGGAATGGAAGTTTCGGCATATATACAGAGGGCAGCCACGAAGGCATTTGCTTACGACTGGATGGAGTGCATTTGTTAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTCCTCCGAGGAGAAGATGGCGAATTGAGATTGGGAATCCGCAGGGCAGCTCAATTAAAAAATTGCAGTAACTTTTCATCTATCTTTGGCCAGCAATTGAATCTTGGTAGCCTTAAAGACATAGTTAATGCTTTATCTACTAGATGTGCCTTTAGCATACACTACAATCCAAGGATTGGTTCATCTGAGTTCATCATACCTATCCACAAATTCTTAAAGAGCCTTGATTATTCTTACTCAGTTGGAATGAGGTTCAGGATGCGTTTTGAATCTGAAGATGCTGCAGAGCGAAGATTCACAGGACTAATTATTGGAATTACTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAAATGCCTAGTGGTAAGGTGGGATGACATGGAAGCTTCAAGGCTCAACAGGGTTTCACCATGGGAGATTGAGCCCTCAGGCTCATCTTCCACCACCAATAGCTTGATGGCAACTAGTTTGAAGAGGACCAAGACTGGATTGCCTTCATCAAAGCTAGAGTTTCCGGTTCCCAGTAGAATTGGGACATCAGACTTTGGGGAATCACTGCGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTAGGCATTGATACTACTTTCAATAGTATCAGTGCTCATAGTCACCACCAGTTATCTGAATTACAGAGGTGCTATCCCGGTTCAACCTATCCCGGGATCGCTTCAACAGGAAACAACATCAGAATCCCACAAATGAATTCTGATGTTTCCTGCAATGGCTTTGGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGACAAGCCTTTTCTGTCAACGAGGCTTGTAGAAATGGTCGCTTTGGACTTTTTGATGGTCACCACCAGGTGCCAAGATCCACAAATGGATGGTCTTCTCTGACGAGTAACAACTCACATTTTCATCCATCAGTGTTGATGTACCAGCAAGCGTCAACCATGGATTATAATAACAAAATTAATCCGGTGGAGGATAACGTCCTTCAAAGAGGTTCGTTCTATGCTTCTGAAATGAAAGATGGTACATCTGCCTCAACGCCAACTAATAGGCCTATTTTCCGCGGGCCAGCTCATGAAGACATGAACTCGTTTGGTACACATTCACGCGATTTGGTTGCACTACAGAGAAGCGGTCAAGAGTTGGTTTCCACATGTAAAAGTAGCTGCAGAGTGTTTGGTTTTTCATTAACCGAGGGTGCTCCCATTGCAAATAAAGATGCAGAACCCTCTGCAGTCACTTGCCAGATAAATCCTGGACCTCCCTCCTTCACAAGACATGTTGAAGATGATTTCAATCCAAGGCATTCACTTCGGAGCAAGGCGGTTGAAAATTACTATACCAAAGGTGTGCTGCAGTATTGA
Protein sequence

>Msa0945260

MMGLIDLNTTEEDETPSSGSSSSTSIGSVGAVGSGSGSSVCLELWHACAGPMISLPKKGSVVVYFPQGHLEHLHDFPLSFSDNIPSHVFCRVVDVKLHAEEGNDEVYCQVLLVPESEQVQQKLREGVIDGDGDGEGEDTDAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKNCSNFSSIFGQQLNLGSLKDIVNALSTRCAFSIHYNPRIGSSEFIIPIHKFLKSLDYSYSVGMRFRMRFESEDAAERRFTGLIIGITDVDPVRWPGSKWKCLVVRWDDMEASRLNRVSPWEIEPSGSSSTTNSLMATSLKRTKTGLPSSKLEFPVPSRIGTSDFGESLRFQKVLQGQEILGIDTTFNSISAHSHHQLSELQRCYPGSTYPGIASTGNNIRIPQMNSDVSCNGFGESFRFQKVLQGQEILPSQPYGQAFSVNEACRNGRFGLFDGHHQVPRSTNGWSSLTSNNSHFHPSVLMYQQASTMDYNNKINPVEDNVLQRGSFYASEMKDGTSASTPTNRPIFRGPAHEDMNSFGTHSRDLVALQRSGQELVSTCKSSCRVFGFSLTEGAPIANKDAEPSAVTCQINPGPPSFTRHVEDDFNPRHSLRSKAVENYYTKGVLQY*